AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1268020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1268020 MtrunA17_Chr2g0286021 100.000 27 0 0 1 27 1 27 6.22e-13 63.2
Msa1268020 MtrunA17_Chr7g0218571 72.973 37 10 0 65 101 75 111 3.17e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 118 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCATAAGTTTAGGCTTT+AGG 0.170885 8_3:-559002 Msa1268020:three_prime_UTR
TCTTTCCAGCCAACAAATTT+AGG 0.187535 8_3:-557082 Msa1268020:intron
AACCATAAGTTTAGGCTTTA+GGG 0.213110 8_3:-559001 Msa1268020:three_prime_UTR
AAGCTATATTGTAGGGTATA+TGG 0.229586 8_3:-558911 Msa1268020:three_prime_UTR
GACTTGTTTGGTGTAAATTA+AGG 0.241182 8_3:-558662 Msa1268020:three_prime_UTR
TTCAAATAAGTTAATCTAAA+AGG 0.250881 8_3:-558797 Msa1268020:three_prime_UTR
GCTTTAGTTCAAATTGCTTT+TGG 0.254423 8_3:-560276 Msa1268020:intron
GGAGAAAATTGAGTACCTTT+TGG 0.281512 8_3:-558641 Msa1268020:three_prime_UTR
GGAGTACTCCTTCAGGCTTA+TGG 0.286052 8_3:-558565 Msa1268020:three_prime_UTR
ACTGCTATTATTATCATGTT+TGG 0.291212 8_3:-559935 Msa1268020:three_prime_UTR
ATCCCTAAAGCCTAAACTTA+TGG 0.300096 8_3:+558999 None:intergenic
GGAAGAAAGTTGGAGAGTTT+TGG 0.300993 8_3:-559643 Msa1268020:three_prime_UTR
TCGCCCTCGTTCTTTCTTCA+AGG 0.310085 8_3:-561444 Msa1268020:CDS
CTTGCTGATCCTAAATTTGT+TGG 0.321349 8_3:+557073 None:intergenic
AGCTATCGTCTTGAGGATTA+TGG 0.321477 8_3:-557023 Msa1268020:three_prime_UTR
CTGCATGTATTGCAGCTCTA+TGG 0.327181 8_3:+557336 None:intergenic
TACGCCACTATCTAAATTGC+AGG 0.347216 8_3:-560027 Msa1268020:three_prime_UTR
CAGTTAGGACCGAGGCTTCT+TGG 0.352101 8_3:-560503 Msa1268020:CDS
AGCGGCTGGTGTGTCGGTTT+TGG 0.352405 8_3:-560639 Msa1268020:CDS
TTCTATTGCATGGCTAAGTA+TGG 0.352654 8_3:-559576 Msa1268020:three_prime_UTR
ACCACGAAGTCCGATCCTTC+AGG 0.362970 8_3:+557416 None:intergenic
AACATACACATAAAATTTGC+AGG 0.374225 8_3:+559700 None:intergenic
TTCCAAAACCAAAACACTAT+TGG 0.388360 8_3:+556941 None:intergenic
ACGCACCCACTAACTTTCAT+TGG 0.393917 8_3:+560059 None:intergenic
AAAGCCATGTTTATGCAGTT+AGG 0.403852 8_3:-560518 Msa1268020:CDS
CCTCGTTCTTTCTTCAAGGT+TGG 0.406404 8_3:-561440 Msa1268020:intron
TTACGAGAACTTATAGAAAC+AGG 0.407103 8_3:+558853 None:intergenic
CAGCATTGGAGTACTCCTTC+AGG 0.411265 8_3:-558572 Msa1268020:three_prime_UTR
AGTGGAGTTGTTAGTGGACT+TGG 0.412473 8_3:-558613 Msa1268020:three_prime_UTR
GAAGTCCACAGTTGCCGATC+AGG 0.414976 8_3:-559361 Msa1268020:three_prime_UTR
TAGGACCGAGGCTTCTTGGC+AGG 0.415660 8_3:-560499 Msa1268020:CDS
GAGACAAGTGGAGTTGTTAG+TGG 0.419382 8_3:-558619 Msa1268020:three_prime_UTR
ATGGTTCCACCATTTGTGTT+GGG 0.424035 8_3:+557355 None:intergenic
TTGGCAGGGTTGACGATTCA+AGG 0.427680 8_3:-560484 Msa1268020:CDS
GCAGCTGAAGAGGACTTGTT+TGG 0.442244 8_3:-558674 Msa1268020:three_prime_UTR
CACTCTCCAAGCTATATTGT+AGG 0.446308 8_3:-558919 Msa1268020:three_prime_UTR
TGCTGTTCTGTTATGACAGC+AGG 0.447721 8_3:+560691 None:intergenic
TATGGTTCCACCATTTGTGT+TGG 0.455098 8_3:+557354 None:intergenic
GGAGTTACTGCTAGCAGCAT+TGG 0.459197 8_3:-558586 Msa1268020:three_prime_UTR
TGATATGCTGTAGCAGTTGT+TGG 0.463306 8_3:-559028 Msa1268020:three_prime_UTR
AGCTATATTGTAGGGTATAT+GGG 0.463513 8_3:-558910 Msa1268020:three_prime_UTR
GAAAGAACGAGGGCGAAACT+TGG 0.463754 8_3:+561451 None:intergenic
ATTCATAATGAAGTGAATAC+CGG 0.464662 8_3:-560345 Msa1268020:CDS
TCTGTAGGCTGTGCAGCGGC+TGG 0.469312 8_3:-560653 Msa1268020:CDS
GGCTGAGCTCTATAAATAAG+AGG 0.470532 8_3:+560080 None:intergenic
TAGTATCTTTGCACCGGTAG+TGG 0.471506 8_3:-560300 Msa1268020:three_prime_UTR
CAGTGGCTTCACTCATGCTC+AGG 0.473741 8_3:-558475 Msa1268020:intron
CAACTCCACTTGTCTCCAAA+AGG 0.476312 8_3:+558626 None:intergenic
GACGATAGCTAGAGACTCAT+AGG 0.476917 8_3:+557036 None:intergenic
GCTGTTGGTGCTGTTTCTGT+AGG 0.479485 8_3:-560668 Msa1268020:CDS
TCCTGAAGGATCGGACTTCG+TGG 0.492081 8_3:-557417 Msa1268020:three_prime_UTR
AAAGTGATAAATGAATAAGA+TGG 0.492984 8_3:-559227 Msa1268020:three_prime_UTR
ATAACCTGCAATTTAGATAG+TGG 0.495770 8_3:+560023 None:intergenic
TGCGGAAATGGGAAGAAAGT+TGG 0.502707 8_3:-559653 Msa1268020:three_prime_UTR
TTGGTTACAACCATAAGTTT+AGG 0.503324 8_3:-559009 Msa1268020:three_prime_UTR
ATTGTCCTTCCCAACACAAA+TGG 0.508396 8_3:-557364 Msa1268020:three_prime_UTR
GCATTAGAATCTGACACTGC+AGG 0.515006 8_3:+559469 None:intergenic
GCTCAGCCAATGAAAGTTAG+TGG 0.517412 8_3:-560065 Msa1268020:three_prime_UTR
AAACTTTCGCGAAAGGCACT+CGG 0.518788 8_3:+559411 None:intergenic
GAGAACTCAAATGAAAGATA+AGG 0.519927 8_3:+559981 None:intergenic
AAGTGATAAATGAATAAGAT+GGG 0.522280 8_3:-559226 Msa1268020:three_prime_UTR
GTTGTTAGTGGACTTGGGAA+AGG 0.528717 8_3:-558607 Msa1268020:three_prime_UTR
TGCGTTTCGATCTTGTTCCC+CGG 0.532113 8_3:+560326 None:intergenic
AAGACTATATTGTCAAAAGA+AGG 0.532861 8_3:+559824 None:intergenic
AGGACCGAGGCTTCTTGGCA+GGG 0.533687 8_3:-560498 Msa1268020:CDS
CTGTGCAGCGGCTGGTGTGT+CGG 0.534067 8_3:-560645 Msa1268020:CDS
ATATACCCTACAATATAGCT+TGG 0.536716 8_3:+558913 None:intergenic
TTCCACCATTTGTGTTGGGA+AGG 0.538380 8_3:+557359 None:intergenic
TTCGTGGTATCGTGATAGCC+AGG 0.540887 8_3:-557401 Msa1268020:three_prime_UTR
ATAAACTAACTTCTATTGCA+TGG 0.542096 8_3:-559586 Msa1268020:three_prime_UTR
TCTGGAGTAGGGCAGAGACT+TGG 0.544052 8_3:+561496 None:intergenic
ACAACTGCTACAGCATATCA+TGG 0.544123 8_3:+559031 None:intergenic
TTCATAATGAAGTGAATACC+GGG 0.553640 8_3:-560344 Msa1268020:CDS
ATGAACCTGATCGGCAACTG+TGG 0.556047 8_3:+559356 None:intergenic
TAATGACTATAAATGCACTC+TGG 0.559994 8_3:-559757 Msa1268020:three_prime_UTR
CAATTTAGATAGTGGCGTAA+AGG 0.562740 8_3:+560031 None:intergenic
GAGAGTTAAACTTTCGCGAA+AGG 0.563012 8_3:+559404 None:intergenic
ACTCTCCAAGCTATATTGTA+GGG 0.569220 8_3:-558918 Msa1268020:three_prime_UTR
TGGCAGGGTTGACGATTCAA+GGG 0.571112 8_3:-560483 Msa1268020:intron
CAAACTGGCAGCACCTATCA+CGG 0.572986 8_3:+560616 None:intergenic
TTGAACTAAAGCACCACTAC+CGG 0.574563 8_3:+560287 None:intergenic
TCAACCCTGCCAAGAAGCCT+CGG 0.575981 8_3:+560494 None:intergenic
GTATCGTGATAGCCAGGCTG+TGG 0.577136 8_3:-557395 Msa1268020:three_prime_UTR
ATCGAAATCCATAAGCCTGA+AGG 0.582144 8_3:+558557 None:intergenic
CATAGGATAAGCAGCTGAAG+AGG 0.583093 8_3:-558684 Msa1268020:three_prime_UTR
CAGGCGAAAACCGAAACCAC+AGG 0.584676 8_3:+560710 None:intergenic
CGGTCCTAACTGCATAAACA+TGG 0.587699 8_3:+560514 None:intergenic
GTGGAGTTGTTAGTGGACTT+GGG 0.588312 8_3:-558612 Msa1268020:three_prime_UTR
GTCCTTCCCAACACAAATGG+TGG 0.593510 8_3:-557361 Msa1268020:three_prime_UTR
CATTAGAATCTGACACTGCA+GGG 0.594106 8_3:+559470 None:intergenic
CATAGAGCTGCAATACATGC+AGG 0.594541 8_3:-557335 Msa1268020:intron
AAGTTAATCTAAAAGGAATG+AGG 0.596998 8_3:-558790 Msa1268020:three_prime_UTR
AAAAGTGAAATGAACCTGAT+CGG 0.598666 8_3:+559347 None:intergenic
CATGGCTAAGTATGGCAAAG+TGG 0.599899 8_3:-559568 Msa1268020:three_prime_UTR
AGTCTCTAGCTATCGTCTTG+AGG 0.600364 8_3:-557030 Msa1268020:three_prime_UTR
TTGCAGATATCCTGAAGGAT+CGG 0.600491 8_3:-557426 Msa1268020:three_prime_UTR
GCAACTTAGTATCTTTGCAC+CGG 0.601933 8_3:-560306 Msa1268020:exon
CTCAGCCAATGAAAGTTAGT+GGG 0.605897 8_3:-560064 Msa1268020:three_prime_UTR
CATAACAGAACAGCAGCTGT+TGG 0.608552 8_3:-560683 Msa1268020:CDS
ATATGAAAGACTATACAACT+TGG 0.609818 8_3:+559859 None:intergenic
TTATGGAGCATCTTCACCAA+GGG 0.620476 8_3:-557006 Msa1268020:three_prime_UTR
CAATCATTATATCCACAGCC+TGG 0.623559 8_3:+557383 None:intergenic
ACTTTCTTCCCATTTCCGCA+TGG 0.626299 8_3:+559656 None:intergenic
ACAGGTTGCAGATATCCTGA+AGG 0.627860 8_3:-557431 Msa1268020:intron
AATGAAAGTTAGTGGGTGCG+TGG 0.628150 8_3:-560057 Msa1268020:three_prime_UTR
GTTCAGCATTCAATCTACTG+TGG 0.633099 8_3:+559731 None:intergenic
AATTTAGGATCAGCAAGAGA+TGG 0.634057 8_3:-557067 Msa1268020:three_prime_UTR
GATGAGATCAGTGTCTACAA+TGG 0.634391 8_3:-558519 Msa1268020:three_prime_UTR
TGTTTATGCAGTTAGGACCG+AGG 0.648761 8_3:-560511 Msa1268020:CDS
ATTATGGAGCATCTTCACCA+AGG 0.653602 8_3:-557007 Msa1268020:three_prime_UTR
ATGGCTAAGTATGGCAAAGT+GGG 0.656929 8_3:-559567 Msa1268020:three_prime_UTR
GAAAGTTAGTGGGTGCGTGG+AGG 0.661324 8_3:-560054 Msa1268020:three_prime_UTR
CTAATTGTGATTCTAGACCT+CGG 0.667604 8_3:+559539 None:intergenic
CCAACCTTGAAGAAAGAACG+AGG 0.679370 8_3:+561440 None:intergenic
CAACCTTGAAGAAAGAACGA+GGG 0.685781 8_3:+561441 None:intergenic
TGTTTCTGTAGGCTGTGCAG+CGG 0.701103 8_3:-560657 Msa1268020:CDS
TGGCAAAGTGGGCTGCACCG+AGG 0.735778 8_3:-559556 Msa1268020:three_prime_UTR
TCATAATGAAGTGAATACCG+GGG 0.737007 8_3:-560343 Msa1268020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATCAATAAAAAAAAAAAAA+AGG + chr8_3:559370-559389 None:intergenic 10.0%
!! AAACATTGAATTAATAAATG+AGG + chr8_3:557148-557167 None:intergenic 15.0%
!!! AATTCAATGTTTTTAGTTTT+TGG - chr8_3:557156-557175 Msa1268020:intron 15.0%
!!! ATTCAATGTTTTTAGTTTTT+GGG - chr8_3:557157-557176 Msa1268020:intron 15.0%
!! AAAACAAAAAATCAATTTGA+AGG + chr8_3:558547-558566 None:intergenic 15.0%
!!! GATTTTTTGTTTTTTTGTTT+TGG - chr8_3:558554-558573 Msa1268020:three_prime_UTR 15.0%
!! TTCAAATAAGTTAATCTAAA+AGG - chr8_3:559639-559658 Msa1268020:three_prime_UTR 15.0%
!! AAAATAAAAACAAAGTTCTA+AGG - chr8_3:560508-560527 Msa1268020:CDS 15.0%
!!! TAGAACTTTGTTTTTATTTT+AGG + chr8_3:560508-560527 None:intergenic 15.0%
!! AAAATAAAAACAAAGTTCTA+AGG - chr8_3:560508-560527 Msa1268020:CDS 15.0%
!! CTATAATAAGAGAATTGAAT+AGG + chr8_3:557029-557048 None:intergenic 20.0%
!! AAGAAAGAAAGTGATAAAAT+CGG + chr8_3:557519-557538 None:intergenic 20.0%
!! AGAATGTATTTAATACAAGA+CGG + chr8_3:557615-557634 None:intergenic 20.0%
!! ACCATTAATGTAAAAATTAG+GGG + chr8_3:558040-558059 None:intergenic 20.0%
!! CACCATTAATGTAAAAATTA+GGG + chr8_3:558041-558060 None:intergenic 20.0%
!!! TATTTTATTTGTGTGACTAA+TGG - chr8_3:558208-558227 Msa1268020:intron 20.0%
!! TTTAATATAAAACAAGCTAC+TGG + chr8_3:558276-558295 None:intergenic 20.0%
!! AAAGTGATAAATGAATAAGA+TGG - chr8_3:559209-559228 Msa1268020:intron 20.0%
!! AAGTGATAAATGAATAAGAT+GGG - chr8_3:559210-559229 Msa1268020:intron 20.0%
!!! TCAATTTTGTTTGTTTGTTT+TGG - chr8_3:559460-559479 Msa1268020:three_prime_UTR 20.0%
!!! CAATTTTGTTTGTTTGTTTT+GGG - chr8_3:559461-559480 Msa1268020:three_prime_UTR 20.0%
!!! AATTTTGTTTGTTTGTTTTG+GGG - chr8_3:559462-559481 Msa1268020:three_prime_UTR 20.0%
!! CTACTATCATTAATTCATTA+TGG + chr8_3:560131-560150 None:intergenic 20.0%
!!! AAATATATGAATGCATTTTC+TGG - chr8_3:560467-560486 Msa1268020:intron 20.0%
!!! TTGATAAATATTTTTGACAG+TGG + chr8_3:560611-560630 None:intergenic 20.0%
! ATAAGAGAATTGAATAGGAA+AGG + chr8_3:557024-557043 None:intergenic 25.0%
!!! TTTTGTTTTTCTGTTTTTCG+TGG - chr8_3:557062-557081 Msa1268020:three_prime_UTR 25.0%
!!! TTTGTTGTTGTTAGAATTGT+AGG - chr8_3:557093-557112 Msa1268020:intron 25.0%
! TTCGGCTTAATTAGTAATAT+TGG - chr8_3:557369-557388 Msa1268020:three_prime_UTR 25.0%
! TCGGCTTAATTAGTAATATT+GGG - chr8_3:557370-557389 Msa1268020:three_prime_UTR 25.0%
!!! ATACATTCTGTTTTAGTTGT+TGG - chr8_3:557626-557645 Msa1268020:intron 25.0%
!! ACCCCTAATTTTTACATTAA+TGG - chr8_3:558036-558055 Msa1268020:intron 25.0%
! GCACCATTAATGTAAAAATT+AGG + chr8_3:558042-558061 None:intergenic 25.0%
! ATTCATAATGAAGTGAATAC+CGG - chr8_3:558091-558110 Msa1268020:intron 25.0%
! ACTGCTATTATTATCATGTT+TGG - chr8_3:558501-558520 Msa1268020:three_prime_UTR 25.0%
! ATATGAAAGACTATACAACT+TGG + chr8_3:558580-558599 None:intergenic 25.0%
! AAGACTATATTGTCAAAAGA+AGG + chr8_3:558615-558634 None:intergenic 25.0%
! AACATACACATAAAATTTGC+AGG + chr8_3:558739-558758 None:intergenic 25.0%
!!! TGCTAATTTTTTTTTCCATG+CGG - chr8_3:558765-558784 Msa1268020:three_prime_UTR 25.0%
! ATAAACTAACTTCTATTGCA+TGG - chr8_3:558850-558869 Msa1268020:three_prime_UTR 25.0%
!! CAACTATTGTTGGAATTTTA+TGG - chr8_3:559115-559134 Msa1268020:intron 25.0%
! AAGTTAATCTAAAAGGAATG+AGG - chr8_3:559646-559665 Msa1268020:three_prime_UTR 25.0%
!! CTTATGGATTTCGATTTTAT+AGG - chr8_3:559887-559906 Msa1268020:three_prime_UTR 25.0%
!! TTTCGATTTTATAGGTCATT+TGG - chr8_3:559895-559914 Msa1268020:three_prime_UTR 25.0%
! CTATCATTAATTCATTATGG+AGG + chr8_3:560128-560147 None:intergenic 25.0%
! GCTTTAATTAGACAAAACAA+AGG - chr8_3:560419-560438 Msa1268020:intron 25.0%
!!! GTTCTAAAACAATGATTTGT+TGG + chr8_3:561306-561325 None:intergenic 25.0%
! AAAAATATCTAGTTATCCCT+TGG + chr8_3:561449-561468 None:intergenic 25.0%
!!! GGGATAACTAGATATTTTTA+TGG - chr8_3:561450-561469 Msa1268020:CDS 25.0%
!!! ATTTTTAGCCAATAGTGTTT+TGG - chr8_3:561487-561506 Msa1268020:CDS 25.0%
AAATATTCCAGAACATAGCA+AGG + chr8_3:557229-557248 None:intergenic 30.0%
TTAGTCATGCATACAATTGA+GGG + chr8_3:557304-557323 None:intergenic 30.0%
CAAATACTAATTTATCGAGC+TGG + chr8_3:557477-557496 None:intergenic 30.0%
! TGACATGTTGTATTAGTTTG+AGG - chr8_3:557562-557581 Msa1268020:intron 30.0%
! GAGGTGTGATTTCTTTTATT+TGG - chr8_3:557581-557600 Msa1268020:intron 30.0%
TTCATAATGAAGTGAATACC+GGG - chr8_3:558092-558111 Msa1268020:intron 30.0%
!! GCTTTAGTTCAAATTGCTTT+TGG - chr8_3:558160-558179 Msa1268020:intron 30.0%
CTGGTGAATTATCATATAAG+TGG + chr8_3:558331-558350 None:intergenic 30.0%
CTTATATGATAATTCACCAG+TGG - chr8_3:558331-558350 Msa1268020:intron 30.0%
ATAACCTGCAATTTAGATAG+TGG + chr8_3:558416-558435 None:intergenic 30.0%
GAGAACTCAAATGAAAGATA+AGG + chr8_3:558458-558477 None:intergenic 30.0%
TAATGACTATAAATGCACTC+TGG - chr8_3:558679-558698 Msa1268020:three_prime_UTR 30.0%
!!! TTTTTTTTTCCATGCGGAAA+TGG - chr8_3:558771-558790 Msa1268020:three_prime_UTR 30.0%
!!! TTTTTTTTCCATGCGGAAAT+GGG - chr8_3:558772-558791 Msa1268020:three_prime_UTR 30.0%
AAAAGTGAAATGAACCTGAT+CGG + chr8_3:559092-559111 None:intergenic 30.0%
! CACTTTTATGCAACTATTGT+TGG - chr8_3:559105-559124 Msa1268020:intron 30.0%
AAAAAAAAAAAAGGGCAACC+CGG + chr8_3:559361-559380 None:intergenic 30.0%
TTGGTTACAACCATAAGTTT+AGG - chr8_3:559427-559446 Msa1268020:three_prime_UTR 30.0%
AACCATAAGTTTAGGCTTTA+GGG - chr8_3:559435-559454 Msa1268020:three_prime_UTR 30.0%
ATATACCCTACAATATAGCT+TGG + chr8_3:559526-559545 None:intergenic 30.0%
AAGCTATATTGTAGGGTATA+TGG - chr8_3:559525-559544 Msa1268020:three_prime_UTR 30.0%
AGCTATATTGTAGGGTATAT+GGG - chr8_3:559526-559545 Msa1268020:three_prime_UTR 30.0%
TTACGAGAACTTATAGAAAC+AGG + chr8_3:559586-559605 None:intergenic 30.0%
!! TTGTTTTGTGCATTTTGCAT+AGG - chr8_3:559735-559754 Msa1268020:three_prime_UTR 30.0%
!! GACTTGTTTGGTGTAAATTA+AGG - chr8_3:559774-559793 Msa1268020:three_prime_UTR 30.0%
GAAATGTACAGCTTATGTAT+AGG - chr8_3:560168-560187 Msa1268020:intron 30.0%
TGTCACATTTGCATATTTGT+TGG - chr8_3:560205-560224 Msa1268020:intron 30.0%
CTACAAAACTAGAGAATCAT+TGG + chr8_3:560290-560309 None:intergenic 30.0%
!!! TGATTCTCTAGTTTTGTAGA+TGG - chr8_3:560291-560310 Msa1268020:three_prime_UTR 30.0%
!!! GATTCTCTAGTTTTGTAGAT+GGG - chr8_3:560292-560311 Msa1268020:three_prime_UTR 30.0%
TAAAAGACCAAATGTTAGCA+GGG + chr8_3:560328-560347 None:intergenic 30.0%
ATAAAAGACCAAATGTTAGC+AGG + chr8_3:560329-560348 None:intergenic 30.0%
!! CTAACATTTGGTCTTTTATG+TGG - chr8_3:560330-560349 Msa1268020:CDS 30.0%
!!! TTTTGTGTTGTTTGCACATA+CGG - chr8_3:560376-560395 Msa1268020:intron 30.0%
TAGACAAAACAAAGGCTTAA+TGG - chr8_3:560427-560446 Msa1268020:intron 30.0%
! AAACAAAGGCTTAATGGTTT+TGG - chr8_3:560433-560452 Msa1268020:intron 30.0%
!!! ATGAATGCATTTTCTGGTTT+AGG - chr8_3:560473-560492 Msa1268020:intron 30.0%
!! TTTCTGGTTTAGGTGTATAT+AGG - chr8_3:560483-560502 Msa1268020:intron 30.0%
! TATTTCTAACGTACTTGATG+CGG + chr8_3:560664-560683 None:intergenic 30.0%
ATACTTTCTTGACTGAAAGA+TGG + chr8_3:561185-561204 None:intergenic 30.0%
!! TAAAACAATGATTTGTTGGC+TGG + chr8_3:561302-561321 None:intergenic 30.0%
TTCCAAAACCAAAACACTAT+TGG + chr8_3:561498-561517 None:intergenic 30.0%
!!! TCAACATCTTTTCTGGAGTA+GGG + chr8_3:556954-556973 None:intergenic 35.0%
! ATCGTAGTCAACATCTTTTC+TGG + chr8_3:556961-556980 None:intergenic 35.0%
GCTAAGAAATTGTGACAGTA+GGG + chr8_3:557196-557215 None:intergenic 35.0%
AGCTAAGAAATTGTGACAGT+AGG + chr8_3:557197-557216 None:intergenic 35.0%
! ATTAGTTCCTTGCTATGTTC+TGG - chr8_3:557219-557238 Msa1268020:intron 35.0%
GTTAGTCATGCATACAATTG+AGG + chr8_3:557305-557324 None:intergenic 35.0%
TGAGATGAGATGAGGTAATA+AGG - chr8_3:557340-557359 Msa1268020:three_prime_UTR 35.0%
GAGATGAGATGAGGTAATAA+GGG - chr8_3:557341-557360 Msa1268020:three_prime_UTR 35.0%
TTAGTTGTTGGATGACGTAA+CGG - chr8_3:557638-557657 Msa1268020:intron 35.0%
! TTCGCTATGGGTTTGAATTT+TGG - chr8_3:557878-557897 Msa1268020:intron 35.0%
AAAGCCATGTTTATGCAGTT+AGG - chr8_3:557918-557937 Msa1268020:intron 35.0%
TCATAATGAAGTGAATACCG+GGG - chr8_3:558093-558112 Msa1268020:intron 35.0%
CTATAAATAAGAGGATCCAC+TGG + chr8_3:558350-558369 None:intergenic 35.0%
! CAATTTAGATAGTGGCGTAA+AGG + chr8_3:558408-558427 None:intergenic 35.0%
AGCAGTCAAACAAAAATGCA+TGG + chr8_3:558487-558506 None:intergenic 35.0%
!!! TGGAGAGTTTTGGCTTTATT+TGG - chr8_3:558803-558822 Msa1268020:three_prime_UTR 35.0%
TTCTATTGCATGGCTAAGTA+TGG - chr8_3:558860-558879 Msa1268020:three_prime_UTR 35.0%
CTAATTGTGATTCTAGACCT+CGG + chr8_3:558900-558919 None:intergenic 35.0%
!!! TGATGATGTTGTTTTTGTCC+TGG - chr8_3:559237-559256 Msa1268020:three_prime_UTR 35.0%
CAACCATAAGTTTAGGCTTT+AGG - chr8_3:559434-559453 Msa1268020:three_prime_UTR 35.0%
ATCCCTAAAGCCTAAACTTA+TGG + chr8_3:559440-559459 None:intergenic 35.0%
ACTCTCCAAGCTATATTGTA+GGG - chr8_3:559518-559537 Msa1268020:three_prime_UTR 35.0%
! GGAGAAAATTGAGTACCTTT+TGG - chr8_3:559795-559814 Msa1268020:three_prime_UTR 35.0%
TGCGTATATAGTCAAGTGTA+TGG - chr8_3:560801-560820 Msa1268020:intron 35.0%
!! CTGCTTTTCGAGAAGTTTAT+TGG - chr8_3:560834-560853 Msa1268020:intron 35.0%
TTATATAGTATGCCCTACTG+TGG - chr8_3:560859-560878 Msa1268020:intron 35.0%
AAACCAAGCATACTCTTTAC+AGG - chr8_3:560987-561006 Msa1268020:intron 35.0%
TATTGACAATACTGATGCGA+AGG + chr8_3:561234-561253 None:intergenic 35.0%
TCTTTCCAGCCAACAAATTT+AGG - chr8_3:561354-561373 Msa1268020:intron 35.0%
CTTGCTGATCCTAAATTTGT+TGG + chr8_3:561366-561385 None:intergenic 35.0%
! AATTTAGGATCAGCAAGAGA+TGG - chr8_3:561369-561388 Msa1268020:intron 35.0%
!!! AGCCAATAGTGTTTTGGTTT+TGG - chr8_3:561493-561512 Msa1268020:CDS 35.0%
!!! GTCAACATCTTTTCTGGAGT+AGG + chr8_3:556955-556974 None:intergenic 40.0%
CAACCTTGAAGAAAGAACGA+GGG + chr8_3:556998-557017 None:intergenic 40.0%
TGTTGTGATGAGATGAGATG+AGG - chr8_3:557332-557351 Msa1268020:intron 40.0%
GAGGTAATAAGGGTCTCTTT+CGG - chr8_3:557351-557370 Msa1268020:three_prime_UTR 40.0%
GGGTTTAAATTCCGTGTCTT+AGG - chr8_3:557390-557409 Msa1268020:three_prime_UTR 40.0%
ACCGGCGTTAAAAGTCTTTA+GGG - chr8_3:557418-557437 Msa1268020:three_prime_UTR 40.0%
! ACCCTAAAGACTTTTAACGC+CGG + chr8_3:557422-557441 None:intergenic 40.0%
CTAATTTATCGAGCTGGAAC+TGG + chr8_3:557471-557490 None:intergenic 40.0%
TTAGTATTTGTAGCTGCGTG+TGG - chr8_3:557487-557506 Msa1268020:intron 40.0%
TAGTATTTGTAGCTGCGTGT+GGG - chr8_3:557488-557507 Msa1268020:intron 40.0%
! CAACTTAACTAGTAGCCTTG+TGG - chr8_3:557675-557694 Msa1268020:intron 40.0%
GCAACTTAGTATCTTTGCAC+CGG - chr8_3:558130-558149 Msa1268020:intron 40.0%
! TTGAACTAAAGCACCACTAC+CGG + chr8_3:558152-558171 None:intergenic 40.0%
GGCTGAGCTCTATAAATAAG+AGG + chr8_3:558359-558378 None:intergenic 40.0%
CTCAGCCAATGAAAGTTAGT+GGG - chr8_3:558372-558391 Msa1268020:intron 40.0%
TACGCCACTATCTAAATTGC+AGG - chr8_3:558409-558428 Msa1268020:intron 40.0%
GTTCAGCATTCAATCTACTG+TGG + chr8_3:558708-558727 None:intergenic 40.0%
! GGAAGAAAGTTGGAGAGTTT+TGG - chr8_3:558793-558812 Msa1268020:three_prime_UTR 40.0%
ATGGCTAAGTATGGCAAAGT+GGG - chr8_3:558869-558888 Msa1268020:three_prime_UTR 40.0%
CATTAGAATCTGACACTGCA+GGG + chr8_3:558969-558988 None:intergenic 40.0%
GAGAGTTAAACTTTCGCGAA+AGG + chr8_3:559035-559054 None:intergenic 40.0%
!!! TTACCCTGTTTTTACACAGG+AGG + chr8_3:559269-559288 None:intergenic 40.0%
TCCTGTGTAAAAACAGGGTA+AGG - chr8_3:559268-559287 Msa1268020:three_prime_UTR 40.0%
CGTACAATACACCAAATGGT+GGG - chr8_3:559294-559313 Msa1268020:three_prime_UTR 40.0%
ACAACTGCTACAGCATATCA+TGG + chr8_3:559408-559427 None:intergenic 40.0%
TGATATGCTGTAGCAGTTGT+TGG - chr8_3:559408-559427 Msa1268020:three_prime_UTR 40.0%
CACTCTCCAAGCTATATTGT+AGG - chr8_3:559517-559536 Msa1268020:three_prime_UTR 40.0%
ATCGAAATCCATAAGCCTGA+AGG + chr8_3:559882-559901 None:intergenic 40.0%
GATGAGATCAGTGTCTACAA+TGG - chr8_3:559917-559936 Msa1268020:three_prime_UTR 40.0%
! TTCTACACTTTTGCTCTCAG+TGG - chr8_3:559944-559963 Msa1268020:three_prime_UTR 40.0%
! TTGTAGCTGATTCCACTTAG+TGG - chr8_3:560025-560044 Msa1268020:three_prime_UTR 40.0%
! TGTAGCTGATTCCACTTAGT+GGG - chr8_3:560026-560045 Msa1268020:three_prime_UTR 40.0%
TGATTCCACTTAGTGGGATA+AGG - chr8_3:560032-560051 Msa1268020:three_prime_UTR 40.0%
! AAAAGCCTTATCCCACTAAG+TGG + chr8_3:560040-560059 None:intergenic 40.0%
AGACACTGAAAGAAGAGAAG+AGG - chr8_3:560239-560258 Msa1268020:intron 40.0%
GACACTGAAAGAAGAGAAGA+GGG - chr8_3:560240-560259 Msa1268020:intron 40.0%
!!! CTCTAGTTTTGTAGATGGGA+TGG - chr8_3:560296-560315 Msa1268020:three_prime_UTR 40.0%
!!! CAAAGGCTTAATGGTTTTGG+TGG - chr8_3:560436-560455 Msa1268020:intron 40.0%
GTGTTTGATGCTGCATATTG+AGG - chr8_3:560534-560553 Msa1268020:intron 40.0%
! AACAGTTCAGCAAACTTGCT+TGG + chr8_3:560722-560741 None:intergenic 40.0%
TTGTAGGTTATAGACCCACT+AGG + chr8_3:560901-560920 None:intergenic 40.0%
! TAGTGGGTCTATAACCTACA+AGG - chr8_3:560900-560919 Msa1268020:intron 40.0%
! TTCAGAGCACTAATCCTTGT+AGG + chr8_3:560917-560936 None:intergenic 40.0%
! CTTTTGCCAATGTTCATCGA+TGG - chr8_3:560958-560977 Msa1268020:intron 40.0%
ATCATGCCATCGATGAACAT+TGG + chr8_3:560967-560986 None:intergenic 40.0%
! CAACCTGTAAAGAGTATGCT+TGG + chr8_3:560993-561012 None:intergenic 40.0%
TTGCAGATATCCTGAAGGAT+CGG - chr8_3:561010-561029 Msa1268020:intron 40.0%
CAATCATTATATCCACAGCC+TGG + chr8_3:561056-561075 None:intergenic 40.0%
ATTGTCCTTCCCAACACAAA+TGG - chr8_3:561072-561091 Msa1268020:intron 40.0%
ATGGTTCCACCATTTGTGTT+GGG + chr8_3:561084-561103 None:intergenic 40.0%
TATGGTTCCACCATTTGTGT+TGG + chr8_3:561085-561104 None:intergenic 40.0%
!! CTGATCCTAAATTTGTTGGC+TGG + chr8_3:561362-561381 None:intergenic 40.0%
AGCTATCGTCTTGAGGATTA+TGG - chr8_3:561413-561432 Msa1268020:intron 40.0%
! ATTATGGAGCATCTTCACCA+AGG - chr8_3:561429-561448 Msa1268020:intron 40.0%
! TTATGGAGCATCTTCACCAA+GGG - chr8_3:561430-561449 Msa1268020:intron 40.0%
CCAACCTTGAAGAAAGAACG+AGG + chr8_3:556999-557018 None:intergenic 45.0%
CCTCGTTCTTTCTTCAAGGT+TGG - chr8_3:556996-557015 Msa1268020:three_prime_UTR 45.0%
CACCGGCGTTAAAAGTCTTT+AGG - chr8_3:557417-557436 Msa1268020:three_prime_UTR 45.0%
AGTATTTGTAGCTGCGTGTG+GGG - chr8_3:557489-557508 Msa1268020:intron 45.0%
TGCTGTTCTGTTATGACAGC+AGG + chr8_3:557748-557767 None:intergenic 45.0%
CATAACAGAACAGCAGCTGT+TGG - chr8_3:557753-557772 Msa1268020:intron 45.0%
!!! CCAGTTTGGGGTTTTAGCTT+GGG - chr8_3:557835-557854 Msa1268020:intron 45.0%
!!! CAGTTTGGGGTTTTAGCTTG+GGG - chr8_3:557836-557855 Msa1268020:intron 45.0%
CGGTCCTAACTGCATAAACA+TGG + chr8_3:557925-557944 None:intergenic 45.0%
TGTTTATGCAGTTAGGACCG+AGG - chr8_3:557925-557944 Msa1268020:intron 45.0%
!! ATTAATGGTGCTGCAGAGAC+TGG - chr8_3:558051-558070 Msa1268020:intron 45.0%
! TAGTATCTTTGCACCGGTAG+TGG - chr8_3:558136-558155 Msa1268020:intron 45.0%
GCTCAGCCAATGAAAGTTAG+TGG - chr8_3:558371-558390 Msa1268020:intron 45.0%
ACGCACCCACTAACTTTCAT+TGG + chr8_3:558380-558399 None:intergenic 45.0%
! AATGAAAGTTAGTGGGTGCG+TGG - chr8_3:558379-558398 Msa1268020:intron 45.0%
ACTTTCTTCCCATTTCCGCA+TGG + chr8_3:558783-558802 None:intergenic 45.0%
TGCGGAAATGGGAAGAAAGT+TGG - chr8_3:558783-558802 Msa1268020:three_prime_UTR 45.0%
CATGGCTAAGTATGGCAAAG+TGG - chr8_3:558868-558887 Msa1268020:three_prime_UTR 45.0%
GCATTAGAATCTGACACTGC+AGG + chr8_3:558970-558989 None:intergenic 45.0%
!! AAACTTTCGCGAAAGGCACT+CGG + chr8_3:559028-559047 None:intergenic 45.0%
ACAGCCTCCTGTGTAAAAAC+AGG - chr8_3:559262-559281 Msa1268020:three_prime_UTR 45.0%
CAGCCTCCTGTGTAAAAACA+GGG - chr8_3:559263-559282 Msa1268020:three_prime_UTR 45.0%
!!! GCCTTACCCTGTTTTTACAC+AGG + chr8_3:559272-559291 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr8_3:559290-559309 Msa1268020:three_prime_UTR 45.0%
GCGTACAATACACCAAATGG+TGG - chr8_3:559293-559312 Msa1268020:three_prime_UTR 45.0%
CATAGGATAAGCAGCTGAAG+AGG - chr8_3:559752-559771 Msa1268020:three_prime_UTR 45.0%
!! GAGTACCTTTTGGAGACAAG+TGG - chr8_3:559805-559824 Msa1268020:three_prime_UTR 45.0%
CAACTCCACTTGTCTCCAAA+AGG + chr8_3:559813-559832 None:intergenic 45.0%
GAGACAAGTGGAGTTGTTAG+TGG - chr8_3:559817-559836 Msa1268020:three_prime_UTR 45.0%
!! AGTGGAGTTGTTAGTGGACT+TGG - chr8_3:559823-559842 Msa1268020:three_prime_UTR 45.0%
!! GTGGAGTTGTTAGTGGACTT+GGG - chr8_3:559824-559843 Msa1268020:three_prime_UTR 45.0%
!! GTTGTTAGTGGACTTGGGAA+AGG - chr8_3:559829-559848 Msa1268020:three_prime_UTR 45.0%
GAGATGTCCCTGCTAACATT+TGG - chr8_3:560318-560337 Msa1268020:exon 45.0%
!!! AGGCTTAATGGTTTTGGTGG+AGG - chr8_3:560439-560458 Msa1268020:intron 45.0%
TTCTAACGTACTTGATGCGG+AGG + chr8_3:560661-560680 None:intergenic 45.0%
ACAGGTTGCAGATATCCTGA+AGG - chr8_3:561005-561024 Msa1268020:intron 45.0%
TTCCACCATTTGTGTTGGGA+AGG + chr8_3:561080-561099 None:intergenic 45.0%
CTGCATGTATTGCAGCTCTA+TGG + chr8_3:561103-561122 None:intergenic 45.0%
CATAGAGCTGCAATACATGC+AGG - chr8_3:561101-561120 Msa1268020:intron 45.0%
AGGCGAGTACAAAATGACGA+TGG + chr8_3:561214-561233 None:intergenic 45.0%
GACGATAGCTAGAGACTCAT+AGG + chr8_3:561403-561422 None:intergenic 45.0%
AGTCTCTAGCTATCGTCTTG+AGG - chr8_3:561406-561425 Msa1268020:intron 45.0%
!!! TTTTATTTTATATCAATTAT+CGG - chr8_3:558012-558031 Msa1268020:intron 5.0%
!! ATCAATAAAAAAAAAAAAAA+GGG + chr8_3:559369-559388 None:intergenic 5.0%
GAAAGAACGAGGGCGAAACT+TGG + chr8_3:556988-557007 None:intergenic 50.0%
TCGCCCTCGTTCTTTCTTCA+AGG - chr8_3:556992-557011 Msa1268020:three_prime_UTR 50.0%
TCCGTGTCTTAGGAATGCAC+CGG - chr8_3:557400-557419 Msa1268020:three_prime_UTR 50.0%
TTATCGAGCTGGAACTGGAC+AGG + chr8_3:557466-557485 None:intergenic 50.0%
! AGCCTTGTGGTTGTTGTTCG+TGG - chr8_3:557688-557707 Msa1268020:intron 50.0%
AGCCACGAACAACAACCACA+AGG + chr8_3:557693-557712 None:intergenic 50.0%
! TTGTGGTTGTTGTTCGTGGC+TGG - chr8_3:557692-557711 Msa1268020:intron 50.0%
!! GCTGTTGGTGCTGTTTCTGT+AGG - chr8_3:557768-557787 Msa1268020:intron 50.0%
! TGTTTCTGTAGGCTGTGCAG+CGG - chr8_3:557779-557798 Msa1268020:intron 50.0%
CAAACTGGCAGCACCTATCA+CGG + chr8_3:557823-557842 None:intergenic 50.0%
! GTGATAGGTGCTGCCAGTTT+GGG - chr8_3:557822-557841 Msa1268020:intron 50.0%
! TGATAGGTGCTGCCAGTTTG+GGG - chr8_3:557823-557842 Msa1268020:intron 50.0%
!!! GCCAGTTTGGGGTTTTAGCT+TGG - chr8_3:557834-557853 Msa1268020:intron 50.0%
CCCAAGCTAAAACCCCAAAC+TGG + chr8_3:557838-557857 None:intergenic 50.0%
!! TTTAGCTTGGGGCTGTTCAG+CGG - chr8_3:557847-557866 Msa1268020:intron 50.0%
TTGGCAGGGTTGACGATTCA+AGG - chr8_3:557952-557971 Msa1268020:intron 50.0%
TGGCAGGGTTGACGATTCAA+GGG - chr8_3:557953-557972 Msa1268020:intron 50.0%
TGCGTTTCGATCTTGTTCCC+CGG + chr8_3:558113-558132 None:intergenic 50.0%
ATGAACCTGATCGGCAACTG+TGG + chr8_3:559083-559102 None:intergenic 50.0%
! TTACACAGGAGGCTGTTTCC+AGG + chr8_3:559258-559277 None:intergenic 50.0%
! TTAAAGCACCCGCATACGCA+GGG + chr8_3:559333-559352 None:intergenic 50.0%
! GCAGCTGAAGAGGACTTGTT+TGG - chr8_3:559762-559781 Msa1268020:three_prime_UTR 50.0%
GGAGTTACTGCTAGCAGCAT+TGG - chr8_3:559850-559869 Msa1268020:three_prime_UTR 50.0%
! CAGCATTGGAGTACTCCTTC+AGG - chr8_3:559864-559883 Msa1268020:three_prime_UTR 50.0%
! GGAGTACTCCTTCAGGCTTA+TGG - chr8_3:559871-559890 Msa1268020:three_prime_UTR 50.0%
CACTGTCGTGTCTGTGTCAA+TGG - chr8_3:560085-560104 Msa1268020:three_prime_UTR 50.0%
TTCGTGGTATCGTGATAGCC+AGG - chr8_3:561035-561054 Msa1268020:intron 50.0%
GTCCTTCCCAACACAAATGG+TGG - chr8_3:561075-561094 Msa1268020:intron 50.0%
! TCTGGAGTAGGGCAGAGACT+TGG + chr8_3:556943-556962 None:intergenic 55.0%
GCCGGTGCATTCCTAAGACA+CGG + chr8_3:557404-557423 None:intergenic 55.0%
! TGTTGTTCGTGGCTGGCTGT+AGG - chr8_3:557699-557718 Msa1268020:intron 55.0%
! GTTGTTCGTGGCTGGCTGTA+GGG - chr8_3:557700-557719 Msa1268020:intron 55.0%
! TTGTTCGTGGCTGGCTGTAG+GGG - chr8_3:557701-557720 Msa1268020:intron 55.0%
TGTAGGGGGTCCTGTGGTTT+CGG - chr8_3:557716-557735 Msa1268020:intron 55.0%
CAGGCGAAAACCGAAACCAC+AGG + chr8_3:557729-557748 None:intergenic 55.0%
!!! GTGTCGGTTTTGGCCGTGAT+AGG - chr8_3:557807-557826 Msa1268020:intron 55.0%
! CGTGATAGGTGCTGCCAGTT+TGG - chr8_3:557821-557840 Msa1268020:intron 55.0%
! TTAGCTTGGGGCTGTTCAGC+GGG - chr8_3:557848-557867 Msa1268020:intron 55.0%
! AGCGGGTAATGGCTTCGCTA+TGG - chr8_3:557865-557884 Msa1268020:intron 55.0%
! GCGGGTAATGGCTTCGCTAT+GGG - chr8_3:557866-557885 Msa1268020:intron 55.0%
CAGTTAGGACCGAGGCTTCT+TGG - chr8_3:557933-557952 Msa1268020:intron 55.0%
TCAACCCTGCCAAGAAGCCT+CGG + chr8_3:557945-557964 None:intergenic 55.0%
! GAAAGTTAGTGGGTGCGTGG+AGG - chr8_3:558382-558401 Msa1268020:intron 55.0%
GAAGTCCACAGTTGCCGATC+AGG - chr8_3:559075-559094 Msa1268020:intron 55.0%
! CTTAAAGCACCCGCATACGC+AGG + chr8_3:559334-559353 None:intergenic 55.0%
! TGCGGGTGCTTTAAGTGCAC+CGG - chr8_3:559339-559358 Msa1268020:three_prime_UTR 55.0%
CAGTGGCTTCACTCATGCTC+AGG - chr8_3:559961-559980 Msa1268020:three_prime_UTR 55.0%
! ATCCGCTTGCTGCCACAGTA+GGG + chr8_3:560874-560893 None:intergenic 55.0%
TCCTGAAGGATCGGACTTCG+TGG - chr8_3:561019-561038 Msa1268020:intron 55.0%
ACCACGAAGTCCGATCCTTC+AGG + chr8_3:561023-561042 None:intergenic 55.0%
GTATCGTGATAGCCAGGCTG+TGG - chr8_3:561041-561060 Msa1268020:intron 55.0%
! TGTTCGTGGCTGGCTGTAGG+GGG - chr8_3:557702-557721 Msa1268020:intron 60.0%
!!! AGCGGCTGGTGTGTCGGTTT+TGG - chr8_3:557797-557816 Msa1268020:intron 60.0%
TGGGGCTGTTCAGCGGGTAA+TGG - chr8_3:557854-557873 Msa1268020:intron 60.0%
TAGGACCGAGGCTTCTTGGC+AGG - chr8_3:557937-557956 Msa1268020:intron 60.0%
AGGACCGAGGCTTCTTGGCA+GGG - chr8_3:557938-557957 Msa1268020:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr8_3:559306-559325 Msa1268020:three_prime_UTR 60.0%
! GCGGGTGCTTTAAGTGCACC+GGG - chr8_3:559340-559359 Msa1268020:three_prime_UTR 60.0%
TGCCCTACTGTGGCAGCAAG+CGG - chr8_3:560869-560888 Msa1268020:intron 60.0%
! CATCCGCTTGCTGCCACAGT+AGG + chr8_3:560875-560894 None:intergenic 60.0%
ACTGTGGCAGCAAGCGGATG+TGG - chr8_3:560875-560894 Msa1268020:intron 60.0%
AGCAAGCGGATGTGGCCTAG+TGG - chr8_3:560883-560902 Msa1268020:intron 60.0%
GCAAGCGGATGTGGCCTAGT+GGG - chr8_3:560884-560903 Msa1268020:intron 60.0%
TCTGTAGGCTGTGCAGCGGC+TGG - chr8_3:557783-557802 Msa1268020:intron 65.0%
CTGTGCAGCGGCTGGTGTGT+CGG - chr8_3:557791-557810 Msa1268020:intron 65.0%
!! TGGCAAAGTGGGCTGCACCG+AGG - chr8_3:558880-558899 Msa1268020:three_prime_UTR 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr8_3:559308-559327 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr8_3:559321-559340 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr8_3:559322-559341 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr8_3:559321-559340 Msa1268020:three_prime_UTR 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr8_3:559322-559341 Msa1268020:three_prime_UTR 65.0%
GCTGGCTGTAGGGGGTCCTG+TGG - chr8_3:557710-557729 Msa1268020:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr8_3:559323-559342 None:intergenic 70.0%
CACCCGCATACGCAGGGTCC+GGG + chr8_3:559327-559346 None:intergenic 70.0%
GCACCCGCATACGCAGGGTC+CGG + chr8_3:559328-559347 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 556936 561522 556936 ID=Msa1268020;Name=Msa1268020
chr8_3 mRNA 556936 561522 556936 ID=Msa1268020-mRNA-1;Parent=Msa1268020;Name=Msa1268020-mRNA-1;_AED=0.16;_eAED=0.19;_QI=0|0.71|0.62|1|0.57|0.5|8|1801|107
chr8_3 exon 556936 557095 556936 ID=Msa1268020-mRNA-1:exon:92;Parent=Msa1268020-mRNA-1
chr8_3 exon 557336 557449 557336 ID=Msa1268020-mRNA-1:exon:91;Parent=Msa1268020-mRNA-1
chr8_3 exon 558476 559071 558476 ID=Msa1268020-mRNA-1:exon:90;Parent=Msa1268020-mRNA-1
chr8_3 exon 559220 560107 559220 ID=Msa1268020-mRNA-1:exon:89;Parent=Msa1268020-mRNA-1
chr8_3 exon 560277 560391 560277 ID=Msa1268020-mRNA-1:exon:88;Parent=Msa1268020-mRNA-1
chr8_3 exon 560484 560545 560484 ID=Msa1268020-mRNA-1:exon:87;Parent=Msa1268020-mRNA-1
chr8_3 exon 560630 560737 560630 ID=Msa1268020-mRNA-1:exon:86;Parent=Msa1268020-mRNA-1
chr8_3 exon 561441 561522 561441 ID=Msa1268020-mRNA-1:exon:85;Parent=Msa1268020-mRNA-1
chr8_3 CDS 561441 561522 561441 ID=Msa1268020-mRNA-1:cds;Parent=Msa1268020-mRNA-1
chr8_3 CDS 560630 560737 560630 ID=Msa1268020-mRNA-1:cds;Parent=Msa1268020-mRNA-1
chr8_3 CDS 560484 560545 560484 ID=Msa1268020-mRNA-1:cds;Parent=Msa1268020-mRNA-1
chr8_3 CDS 560320 560391 560320 ID=Msa1268020-mRNA-1:cds;Parent=Msa1268020-mRNA-1
chr8_3 three_prime_UTR 560277 560319 560277 ID=Msa1268020-mRNA-1:three_prime_utr;Parent=Msa1268020-mRNA-1
chr8_3 three_prime_UTR 559220 560107 559220 ID=Msa1268020-mRNA-1:three_prime_utr;Parent=Msa1268020-mRNA-1
chr8_3 three_prime_UTR 558476 559071 558476 ID=Msa1268020-mRNA-1:three_prime_utr;Parent=Msa1268020-mRNA-1
chr8_3 three_prime_UTR 557336 557449 557336 ID=Msa1268020-mRNA-1:three_prime_utr;Parent=Msa1268020-mRNA-1
chr8_3 three_prime_UTR 556936 557095 556936 ID=Msa1268020-mRNA-1:three_prime_utr;Parent=Msa1268020-mRNA-1
Gene Sequence

>Msa1268020

ATGTCCAAGTCTCTGCCCTACTCCAGAAAAGATGTTGACTACGATAACGCCAAGTTTCGCCCTCGTTCTTTCTTCAAGGTTGGGGGTCCTGTGGTTTCGGTTTTCGCCTGCTGTCATAACAGAACAGCAGCTGTTGGTGCTGTTTCTGTAGGCTGTGCAGCGGCTGGTGTGTCGGTTTTGGCCGTGATAGATTTCAAAGCCATGTTTATGCAGTTAGGACCGAGGCTTCTTGGCAGGGTTGACGATTCAAGGAGACTGGTTAGAGATTTTTATAAGATTCATAATGAAGTGAATACCGGGGAACAAGATCGAAACGCAACTTAG
Protein sequence

>Msa1268020

MSKSLPYSRKDVDYDNAKFRPRSFFKVGGPVVSVFACCHNRTAAVGAVSVGCAAAGVSVLAVIDFKAMFMQLGPRLLGRVDDSRRLVRDFYKIHNEVNTGEQDRNAT*