AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0250650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0250650 MtrunA17_Chr2g0308861 99.576 472 2 0 1 472 1 472 0.0 972
Msa0250650 MtrunA17_Chr5g0443521 27.390 387 237 16 90 459 109 468 5.40e-28 116
Msa0250650 MtrunA17_Chr3g0097771 27.390 387 237 17 90 459 115 474 2.35e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0250650 AT2G44350.1 73.118 465 124 1 1 465 1 464 0.0 730
Msa0250650 AT2G44350.4 73.118 465 124 1 1 465 1 464 0.0 730
Msa0250650 AT2G44350.3 72.961 466 124 2 1 465 1 465 0.0 726
Msa0250650 AT2G44350.2 72.961 466 124 2 1 465 1 465 0.0 726
Msa0250650 AT3G60100.2 72.921 469 122 3 1 468 1 465 0.0 710
Msa0250650 AT3G60100.1 72.281 469 120 4 1 468 1 460 0.0 696
Msa0250650 AT3G60100.3 73.821 424 106 3 1 423 1 420 0.0 648
Msa0250650 AT3G58750.1 28.288 403 238 18 61 438 71 447 7.39e-29 119
Msa0250650 AT2G42790.1 27.907 387 235 17 90 459 105 464 2.26e-28 118
Msa0250650 AT3G58740.1 24.277 346 224 13 90 421 107 428 1.29e-19 91.7

Find 134 sgRNAs with CRISPR-Local

Find 506 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCCACTTGCTCTTTATT+TGG 0.159556 2_2:-39638459 None:intergenic
CCTCTGTATTCTTTCTAAAT+AGG 0.173245 2_2:+39644215 Msa0250650:three_prime_UTR
CATACCATTGGATGATTCTT+TGG 0.185625 2_2:+39640905 Msa0250650:CDS
CTCATAAACTCAAGCATTTC+CGG 0.200318 2_2:-39640969 None:intergenic
TTGAGAATATGTTGGTATTT+AGG 0.213582 2_2:+39644084 Msa0250650:three_prime_UTR
ATAAATGGTGCTTTAATTTC+AGG 0.227190 2_2:-39643925 None:intergenic
TTGGATGATTCTTTGGATTA+TGG 0.241055 2_2:+39640912 Msa0250650:CDS
GAATAAAGGCATTATTGTTT+TGG 0.242772 2_2:+39644185 Msa0250650:three_prime_UTR
GTTCTATTGATTCATCTAAA+TGG 0.244147 2_2:+39635629 Msa0250650:exon
TGTTGTTAACTTGAAAATTT+TGG 0.247238 2_2:+39643986 Msa0250650:three_prime_UTR
ATTGAAATATTTACCTCATC+TGG 0.266300 2_2:-39637973 None:intergenic
AATTGTTCTGTACTTATGTT+TGG 0.284939 2_2:-39641912 None:intergenic
TTGCAGGTTGTGCCTGGATA+TGG 0.296466 2_2:+39642778 Msa0250650:intron
AGAAATATAGTTAAGGAGTT+TGG 0.298747 2_2:+39641885 Msa0250650:CDS
CCTTTATTCTGATGCTCCCT+TGG 0.332132 2_2:-39644171 None:intergenic
GGAACTAGTTCCAGAGTATC+AGG 0.337703 2_2:+39637038 Msa0250650:CDS
GTCTCGCTAATTCAGTTAGA+TGG 0.341818 2_2:+39635836 Msa0250650:CDS
AGCTATTATACCGTTCTCTT+TGG 0.356864 2_2:+39643698 Msa0250650:intron
AGAGCATGGAAGTGTTGAAT+TGG 0.358355 2_2:+39637746 Msa0250650:CDS
GCTGTGTGGGTATAGGTATT+GGG 0.360592 2_2:+39640661 Msa0250650:intron
CTTAGCAATCAACAGATAAA+TGG 0.361994 2_2:-39643940 None:intergenic
AATTTAATTGCTCGTTTGCC+TGG 0.363065 2_2:+39640707 Msa0250650:CDS
GACTGTCAGAAAACACTTCC+AGG 0.363445 2_2:+39638162 Msa0250650:CDS
ACTGGAGAAACTTGAGAAAT+TGG 0.367503 2_2:+39643890 Msa0250650:CDS
CCTCCTATTCTGACCAAGTT+AGG 0.371594 2_2:+39643017 Msa0250650:CDS
GCAAACTATGCTCACATGTT+AGG 0.376742 2_2:+39640936 Msa0250650:CDS
TTTACCGGTTGGGTTGGGTT+GGG 0.377827 2_2:-39635405 None:intergenic
CCAAGGGAGCATCAGAATAA+AGG 0.385123 2_2:+39644171 Msa0250650:three_prime_UTR
CTTTATTCTGATGCTCCCTT+GGG 0.388216 2_2:-39644170 None:intergenic
GAGAAGAGCGTTTACCGGTT+GGG 0.397135 2_2:-39635415 None:intergenic
TCCCTCTGGCAAGTGTATCT+TGG 0.398610 2_2:-39642826 None:intergenic
ATGAGTTTACTTGAAGTTTG+TGG 0.399247 2_2:+39644278 Msa0250650:three_prime_UTR
TGTCAAAAGAAGCCACAATA+TGG 0.404498 2_2:-39638217 None:intergenic
GCATTTGCAGCTGCTCTGAA+TGG 0.405218 2_2:+39641443 Msa0250650:CDS
GTTTACCGGTTGGGTTGGGT+TGG 0.410945 2_2:-39635406 None:intergenic
TTGATATGGGACCGGGCTCT+TGG 0.411393 2_2:+39643837 Msa0250650:CDS
GAGATGTCATACAGTGTTAG+TGG 0.411690 2_2:-39635875 None:intergenic
ATATGTTGGTATTTAGGAAA+AGG 0.414102 2_2:+39644090 Msa0250650:three_prime_UTR
ACTGCATGGTTTAGCCAATC+AGG 0.415933 2_2:+39641478 Msa0250650:CDS
AGCTGGAAAAGTGGATCATT+AGG 0.420903 2_2:-39642868 None:intergenic
TGACATTACCTTGCCTAACT+TGG 0.421588 2_2:-39643030 None:intergenic
TGCAGACAAACCTGATACTC+TGG 0.421644 2_2:-39637048 None:intergenic
GGCTGTATGTTTCTATCCAC+AGG 0.423756 2_2:+39640991 Msa0250650:CDS
TACTGGTGTAATGGCCCTCC+AGG 0.424587 2_2:+39639142 Msa0250650:CDS
TATGTTGGTATTTAGGAAAA+GGG 0.428786 2_2:+39644091 Msa0250650:three_prime_UTR
GAGCGTTTACCGGTTGGGTT+GGG 0.430703 2_2:-39635410 None:intergenic
GTCATTGGATGAGCAGAAAC+AGG 0.436951 2_2:-39639110 None:intergenic
CGGAAATGCTTGAGTTTATG+AGG 0.437582 2_2:+39640970 Msa0250650:CDS
TTGGATTTGCAGGTTGTGCC+TGG 0.452455 2_2:+39642772 Msa0250650:intron
CACAATATGGCCTCAGGCAA+AGG 0.458721 2_2:-39638204 None:intergenic
GAGCATGGAAGTGTTGAATT+GGG 0.461632 2_2:+39637747 Msa0250650:CDS
TCAACCCAACCCAACCCAAC+CGG 0.466043 2_2:+39635401 Msa0250650:five_prime_UTR
ATTTGCAGAGTATGCTTACA+AGG 0.466451 2_2:+39639073 Msa0250650:intron
AAATAACAAAATAACCTGAT+TGG 0.471116 2_2:-39641492 None:intergenic
GATACACTCTGGTGATATGT+AGG 0.472026 2_2:+39643962 Msa0250650:three_prime_UTR
GCTTCAATGCAAACTCCCTC+TGG 0.472659 2_2:-39642840 None:intergenic
GCAAGTGGATTCATTAGCTC+AGG 0.473278 2_2:+39638470 Msa0250650:CDS
ACAATTCACTACTGGTGTAA+TGG 0.476175 2_2:+39639133 Msa0250650:CDS
TAAATGTAAGCAGCAATTCC+AGG 0.476938 2_2:-39640725 None:intergenic
CCACTGTGAGCATCAACATT+AGG 0.478544 2_2:-39643543 None:intergenic
CATGTTAGGATTTGATGATC+CGG 0.483789 2_2:+39640950 Msa0250650:CDS
CGAAGTCGTGCGAAAATCCC+AGG 0.483821 2_2:+39638498 Msa0250650:CDS
TCTGATTAAAAGGTACTTGG+TGG 0.484331 2_2:+39637904 Msa0250650:intron
TTTGGTGTCGCAAGGAGTAT+TGG 0.484554 2_2:+39643716 Msa0250650:CDS
AGAGCGTTTACCGGTTGGGT+TGG 0.493675 2_2:-39635411 None:intergenic
ATGGATCAGAAATATAGTTA+AGG 0.495096 2_2:+39641878 Msa0250650:CDS
TAAAACTCTGAACAGTGGCC+AGG 0.495286 2_2:+39641950 Msa0250650:CDS
GAGTATTGGAGTTGGCCCTC+AGG 0.499686 2_2:+39643730 Msa0250650:CDS
CCAGTAGTGAATTGTGTCAT+TGG 0.501524 2_2:-39639125 None:intergenic
TGGTGGGGAGCCTTTGCCTG+AGG 0.502216 2_2:+39638194 Msa0250650:CDS
GGCTAAACCATGCAGTGGGC+CGG 0.503287 2_2:-39641471 None:intergenic
AAGGTACTTGGTGGAATGAG+AGG 0.504202 2_2:+39637913 Msa0250650:intron
GGTTTAGCCGGCCCACTGCA+TGG 0.504218 2_2:+39641464 Msa0250650:CDS
TTCAAGCTATCCTCATAAGT+TGG 0.509007 2_2:-39640686 None:intergenic
TGGAAAGCGCAGAAACGCTT+CGG 0.509891 2_2:-39635659 None:intergenic
TTGCCTAACTTGGTCAGAAT+AGG 0.514733 2_2:-39643020 None:intergenic
TTGAAATATTTACCTCATCT+GGG 0.515259 2_2:-39637972 None:intergenic
TCAGGCAAAGGCTCCCCACC+AGG 0.518613 2_2:-39638192 None:intergenic
GGAGTACTACTGAACTACTA+TGG 0.523818 2_2:+39643564 Msa0250650:CDS
AGAAGCCACAATATGGCCTC+AGG 0.528313 2_2:-39638210 None:intergenic
GTATTGGGAGCCAACTTATG+AGG 0.532378 2_2:+39640676 Msa0250650:CDS
CCAATGACACAATTCACTAC+TGG 0.535441 2_2:+39639125 Msa0250650:CDS
CGAATTTACAAAGGCATACG+AGG 0.536029 2_2:+39640564 Msa0250650:CDS
CCGTTCTCTTTGGTGTCGCA+AGG 0.537309 2_2:+39643708 Msa0250650:CDS
CTCTTGGAATGCCACTTGAA+AGG 0.537697 2_2:+39643853 Msa0250650:CDS
GATACCAAATAAAGAGCAAG+TGG 0.542297 2_2:+39638455 Msa0250650:intron
CTTTGCCTGAGGCCATATTG+TGG 0.543494 2_2:+39638205 Msa0250650:CDS
AAAACTCCATGTCCATATCC+AGG 0.545465 2_2:-39642790 None:intergenic
CAAGTGGCATTCCAAGAGCC+CGG 0.548890 2_2:-39643848 None:intergenic
GTTGGTATTTAGGAAAAGGG+TGG 0.549900 2_2:+39644094 Msa0250650:three_prime_UTR
GCAGCTGCAAATGCAAGATA+AGG 0.554314 2_2:-39641434 None:intergenic
CCTAACTTGGTCAGAATAGG+AGG 0.560534 2_2:-39643017 None:intergenic
GCTGCTCTGAATGGTTTAGC+CGG 0.568292 2_2:+39641452 Msa0250650:CDS
ATACACTCTGGTGATATGTA+GGG 0.571478 2_2:+39643963 Msa0250650:three_prime_UTR
CTAACTGAATTAGCGAGACT+AGG 0.577132 2_2:-39635832 None:intergenic
TTGCTGCTTACATTTATCGA+CGG 0.581460 2_2:+39640732 Msa0250650:CDS
TACGACGCGAGATCGAAGCT+TGG 0.582971 2_2:-39635679 None:intergenic
TTTCAGGGAATTCGCTTTAG+GGG 0.586113 2_2:+39638126 Msa0250650:intron
ACAGCATAAATTAGGTCCCA+AGG 0.590628 2_2:+39644154 Msa0250650:three_prime_UTR
AAGAAGCTGAAGAAAGAGCA+TGG 0.593745 2_2:+39637732 Msa0250650:CDS
TTACAAAGGCATACGAGGGT+GGG 0.601148 2_2:+39640569 Msa0250650:CDS
TTTACAAAGGCATACGAGGG+TGG 0.602923 2_2:+39640568 Msa0250650:CDS
GTCGCAAGGAGTATTGGAGT+TGG 0.606634 2_2:+39643722 Msa0250650:CDS
TGAGCATCAACATTAGGCCA+TGG 0.610028 2_2:-39643537 None:intergenic
GAGAAACTTGAGAAATTGGT+CGG 0.612925 2_2:+39643894 Msa0250650:CDS
CTATTTAGAAAGAATACAGA+GGG 0.615356 2_2:-39644214 None:intergenic
TGTTCTGATTGAGAATATGT+TGG 0.615458 2_2:+39644076 Msa0250650:three_prime_UTR
TCCCCACCAGGAAAAGCACC+TGG 0.616236 2_2:-39638180 None:intergenic
TCCAAGATACACTTGCCAGA+GGG 0.616781 2_2:+39642825 Msa0250650:CDS
TAATCCAAAGAATCATCCAA+TGG 0.620771 2_2:-39640909 None:intergenic
TATTCTGACCAAGTTAGGCA+AGG 0.623130 2_2:+39643022 Msa0250650:CDS
CAGCATAAATTAGGTCCCAA+GGG 0.626145 2_2:+39644155 Msa0250650:three_prime_UTR
ATGACAGCTTTAGTGTGGCT+AGG 0.626895 2_2:+39637937 Msa0250650:CDS
GGTGGAGAGCGAATTTACAA+AGG 0.630867 2_2:+39640555 Msa0250650:intron
CTCAGCTGTTGACCCAGATG+AGG 0.633642 2_2:+39637960 Msa0250650:CDS
CCTTGCGACACCAAAGAGAA+CGG 0.640152 2_2:-39643708 None:intergenic
TGATTGGCTAAACCATGCAG+TGG 0.651254 2_2:-39641476 None:intergenic
AGGGTGGGATACATAAGTCA+AGG 0.654340 2_2:+39640584 Msa0250650:CDS
GATTGGCTAAACCATGCAGT+GGG 0.661247 2_2:-39641475 None:intergenic
ATATTCTCAATCAGAACATG+CGG 0.669211 2_2:-39644071 None:intergenic
GTTGTGCCTGGATATGGACA+TGG 0.672928 2_2:+39642784 Msa0250650:CDS
GAGGAATGACAGCTTTAGTG+TGG 0.675279 2_2:+39637932 Msa0250650:CDS
ATGTGCAGTGATCATGAAGG+CGG 0.675536 2_2:+39641141 Msa0250650:intron
ATCCAAGATACACTTGCCAG+AGG 0.678943 2_2:+39642824 Msa0250650:CDS
ATGTCATACAGTGTTAGTGG+AGG 0.680095 2_2:-39635872 None:intergenic
AATCTGTTACTCAACCTGGA+GGG 0.680688 2_2:-39639156 None:intergenic
ATTCATAAAACTCTGAACAG+TGG 0.683094 2_2:+39641945 Msa0250650:CDS
CCTATTTAGAAAGAATACAG+AGG 0.686044 2_2:-39644215 None:intergenic
TGTTACAGGAAGTTCTACGA+TGG 0.687651 2_2:+39641859 Msa0250650:intron
TTGATTGCTAAGATACACTC+TGG 0.692641 2_2:+39643951 Msa0250650:three_prime_UTR
TTCATGTGCAGTGATCATGA+AGG 0.695871 2_2:+39641138 Msa0250650:intron
GAACTACTATGGTCTAACTG+AGG 0.714548 2_2:+39643575 Msa0250650:CDS
GAATTTACAAAGGCATACGA+GGG 0.725539 2_2:+39640565 Msa0250650:CDS
CCTAATGTTGATGCTCACAG+TGG 0.737956 2_2:+39643543 Msa0250650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATATTATAAAATAT+AGG + chr2_2:39639643-39639662 Msa0250650:intron 0.0%
!! CAAAAACAATAAAAAAAAAA+AGG - chr2_2:39635748-39635767 None:intergenic 10.0%
!! ATTTATTTATATATAGATGT+TGG + chr2_2:39638261-39638280 Msa0250650:intron 10.0%
!! ATAATAAGTTTAATAATCAT+AGG + chr2_2:39638635-39638654 Msa0250650:intron 10.0%
!! AATATTATAAAATATAGGAT+TGG + chr2_2:39639648-39639667 Msa0250650:intron 10.0%
!!! ATTATTTAATATTTTTTGTG+GGG - chr2_2:39640248-39640267 None:intergenic 10.0%
!! AATTATATAATTATGAGTAT+TGG + chr2_2:39641733-39641752 Msa0250650:intron 10.0%
!! ATAAAATCTTCTTTAATAAA+AGG + chr2_2:39642220-39642239 Msa0250650:intron 10.0%
!!! TTTAATAAAAGGATTTTTTT+TGG + chr2_2:39642231-39642250 Msa0250650:intron 10.0%
!! TATTTAATGTTGTAAAATAA+TGG + chr2_2:39642619-39642638 Msa0250650:intron 10.0%
!! ATTTAATGTTGTAAAATAAT+GGG + chr2_2:39642620-39642639 Msa0250650:intron 10.0%
!!! TAATTTTCTCAAATTACTAT+CGG - chr2_2:39636657-39636676 None:intergenic 15.0%
!! AAAAGAAAAATTTATGCAAA+AGG - chr2_2:39639212-39639231 None:intergenic 15.0%
!! GTATAAAGATAAATATACAT+AGG - chr2_2:39639946-39639965 None:intergenic 15.0%
!! TAATTAATAATGTACATGTT+AGG - chr2_2:39640093-39640112 None:intergenic 15.0%
!!! ATCGCAATTTTTTTTTTTTT+TGG - chr2_2:39640460-39640479 None:intergenic 15.0%
!! CAATAAAAAAAATTCATTTC+AGG + chr2_2:39640534-39640553 Msa0250650:intron 15.0%
!!! GATTTCTTATCATATTTTAA+AGG + chr2_2:39640862-39640881 Msa0250650:intron 15.0%
!! ATTACAATAATAATAACAAC+CGG - chr2_2:39641365-39641384 None:intergenic 15.0%
!! AATCATATTATATATCTCAT+TGG - chr2_2:39641774-39641793 None:intergenic 15.0%
!! AAAGTAATAATATACAGATA+AGG - chr2_2:39641812-39641831 None:intergenic 15.0%
!! TAAATATTGTTGATATGTTA+TGG + chr2_2:39642065-39642084 Msa0250650:intron 15.0%
!!! TACAAAATGATTGTTTTAAA+AGG + chr2_2:39642673-39642692 Msa0250650:intron 15.0%
!! AAAAAATTGGAAAATTGAAC+TGG - chr2_2:39635356-39635375 None:intergenic 20.0%
!!! GTTCAATTTTCCAATTTTTT+TGG + chr2_2:39635356-39635375 Msa0250650:five_prime_UTR 20.0%
!! TAATTAGGGATTGAAAAAAT+AGG - chr2_2:39635547-39635566 None:intergenic 20.0%
!! AAAGGAAATATATTGAAAGA+AGG - chr2_2:39635730-39635749 None:intergenic 20.0%
!!! TTTATGATGATGATTTTTGA+TGG + chr2_2:39635797-39635816 Msa0250650:intron 20.0%
!!! TCATTTTCTCAAATTACTAT+CGG - chr2_2:39636561-39636580 None:intergenic 20.0%
!!! AATTTTCTCAAATTACTATC+GGG - chr2_2:39636656-39636675 None:intergenic 20.0%
!! TTATAAAATTCCAAACTACA+CGG - chr2_2:39636867-39636886 None:intergenic 20.0%
!!! TAATGTAGTTTAGATTTTGT+TGG + chr2_2:39636884-39636903 Msa0250650:intron 20.0%
!!! TGAAAATAATTTGTGAACAA+TGG + chr2_2:39637420-39637439 Msa0250650:intron 20.0%
!!! TTTTAATTATCTGGTTGTAA+TGG + chr2_2:39637538-39637557 Msa0250650:intron 20.0%
!! TTTAATTATCTGGTTGTAAT+GGG + chr2_2:39637539-39637558 Msa0250650:intron 20.0%
!! TTGTTGTGTAGTAAATTTAT+AGG + chr2_2:39638793-39638812 Msa0250650:intron 20.0%
!! TTTAGTCTGTTATAAGTTAT+TGG + chr2_2:39640184-39640203 Msa0250650:intron 20.0%
!! TAAAAAAAATTCATTTCAGG+TGG + chr2_2:39640537-39640556 Msa0250650:intron 20.0%
!! ATTAAACATTTAACATGCAT+TGG + chr2_2:39640782-39640801 Msa0250650:intron 20.0%
!! TTAAACATTTAACATGCATT+GGG + chr2_2:39640783-39640802 Msa0250650:intron 20.0%
!!! CATATTTTAAAGGATATACA+AGG + chr2_2:39640872-39640891 Msa0250650:intron 20.0%
!!! CTGTTTGATTTTTTATGTTT+TGG + chr2_2:39641109-39641128 Msa0250650:intron 20.0%
!! AAATAACAAAATAACCTGAT+TGG - chr2_2:39641495-39641514 None:intergenic 20.0%
!! CATATACTTAAAATTTCTCA+AGG - chr2_2:39642044-39642063 None:intergenic 20.0%
!!! GAAGATTTTATCATAACAAT+TGG - chr2_2:39642211-39642230 None:intergenic 20.0%
!!! AAAATCGAAATCCTTTTTAA+TGG - chr2_2:39642472-39642491 None:intergenic 20.0%
!!! ATTTTAGATTTTGTTTGCTT+TGG + chr2_2:39642904-39642923 Msa0250650:intron 20.0%
!!! ATTTTGTTGGAAAAGAAATA+AGG + chr2_2:39643191-39643210 Msa0250650:intron 20.0%
!! CATAAAAAAAGGTAAGAAAA+AGG - chr2_2:39643269-39643288 None:intergenic 20.0%
!!! CTTTTTCTTACCTTTTTTTA+TGG + chr2_2:39643267-39643286 Msa0250650:intron 20.0%
!! CAGGAATATATAAAAAAATG+TGG - chr2_2:39643440-39643459 None:intergenic 20.0%
!!! TTTTATAGGTTAAAAATCCA+TGG + chr2_2:39643520-39643539 Msa0250650:intron 20.0%
!!! TCAATTTGCTATTACTTTTT+AGG + chr2_2:39643644-39643663 Msa0250650:intron 20.0%
!!! CAATTTGCTATTACTTTTTA+GGG + chr2_2:39643645-39643664 Msa0250650:intron 20.0%
!! ATCAACTAAAATACAATGAA+AGG - chr2_2:39643822-39643841 None:intergenic 20.0%
!!! TCATTGTATTTTAGTTGATA+TGG + chr2_2:39643823-39643842 Msa0250650:intron 20.0%
!!! CATTGTATTTTAGTTGATAT+GGG + chr2_2:39643824-39643843 Msa0250650:intron 20.0%
!!! TGTTGTTAACTTGAAAATTT+TGG + chr2_2:39643986-39644005 Msa0250650:three_prime_UTR 20.0%
!! CAAAATAACCAGAAAAATAA+GGG - chr2_2:39644050-39644069 None:intergenic 20.0%
!! ACAAAATAACCAGAAAAATA+AGG - chr2_2:39644051-39644070 None:intergenic 20.0%
!!! AATAAAGGCATTATTGTTTT+GGG + chr2_2:39644186-39644205 Msa0250650:three_prime_UTR 20.0%
! TGATTACGATCCAAAAAAAT+TGG - chr2_2:39635369-39635388 None:intergenic 25.0%
!!! GTTCTATTGATTCATCTAAA+TGG + chr2_2:39635629-39635648 Msa0250650:exon 25.0%
! TGAAAGAAGGATTTAAAGAA+TGG - chr2_2:39635717-39635736 None:intergenic 25.0%
! TTTGTGCTTAAAAGAATTCA+CGG - chr2_2:39636413-39636432 None:intergenic 25.0%
!! CATTTTCTCAAATTACTATC+GGG - chr2_2:39636560-39636579 None:intergenic 25.0%
! ATACAAATTCAAGACAAACA+GGG - chr2_2:39636946-39636965 None:intergenic 25.0%
! AATACAAATTCAAGACAAAC+AGG - chr2_2:39636947-39636966 None:intergenic 25.0%
!!! TTGTCTGCATTTTTAAGTTT+TGG + chr2_2:39637062-39637081 Msa0250650:intron 25.0%
!!! TCTATGCTATGTTTTAATCT+TGG + chr2_2:39637682-39637701 Msa0250650:intron 25.0%
!!! CTTGCAATGTAACTTATTTT+TGG + chr2_2:39637871-39637890 Msa0250650:intron 25.0%
!! AACTGCATTTTCTGATTAAA+AGG + chr2_2:39637894-39637913 Msa0250650:intron 25.0%
!!! TTTTCTGATTAAAAGGTACT+TGG + chr2_2:39637901-39637920 Msa0250650:intron 25.0%
! TTGAAATATTTACCTCATCT+GGG - chr2_2:39637975-39637994 None:intergenic 25.0%
! ATTGAAATATTTACCTCATC+TGG - chr2_2:39637976-39637995 None:intergenic 25.0%
!! GTAAATATTTCAATTGACTC+AGG + chr2_2:39637982-39638001 Msa0250650:intron 25.0%
!!! AATAGCATGTTTTGTTTTTC+AGG + chr2_2:39638110-39638129 Msa0250650:intron 25.0%
!!! ATAGCATGTTTTGTTTTTCA+GGG + chr2_2:39638111-39638130 Msa0250650:intron 25.0%
! TTACAAAAGGAAATTAACCT+GGG - chr2_2:39638518-39638537 None:intergenic 25.0%
! ATTACAAAAGGAAATTAACC+TGG - chr2_2:39638519-39638538 None:intergenic 25.0%
! CTCTGCAAATAAAGAAAATA+AGG - chr2_2:39639063-39639082 None:intergenic 25.0%
!!! TATTGAACCACTGATTTTTA+AGG + chr2_2:39639182-39639201 Msa0250650:intron 25.0%
! GAAAAATTTATGCAAAAGGA+AGG - chr2_2:39639208-39639227 None:intergenic 25.0%
!! ACTATACTTTCTGAAGAAAA+AGG - chr2_2:39639296-39639315 None:intergenic 25.0%
! AAAATTAATCAAAGGGTGAT+AGG + chr2_2:39639397-39639416 Msa0250650:intron 25.0%
!!! CAAATTTTAGCTCAGAAAAT+TGG + chr2_2:39639428-39639447 Msa0250650:intron 25.0%
! GACTAAGAAAATACTTCAAT+AGG + chr2_2:39639462-39639481 Msa0250650:intron 25.0%
! GTTAATTCTCTTTCTTCATT+GGG - chr2_2:39639847-39639866 None:intergenic 25.0%
! AATGAAGAAAGAGAATTAAC+CGG + chr2_2:39639847-39639866 Msa0250650:intron 25.0%
! TTAACGTGTTGCAAAAATTA+AGG - chr2_2:39640037-39640056 None:intergenic 25.0%
! ATCTAAGTGTGTATAAATGT+GGG + chr2_2:39640141-39640160 Msa0250650:intron 25.0%
! AATATCACTAAGCAAAAACT+TGG - chr2_2:39640361-39640380 None:intergenic 25.0%
! AATCCATCCAAAATGTTAAA+AGG - chr2_2:39640846-39640865 None:intergenic 25.0%
!!! TTTTAAAGGATATACAAGGA+TGG + chr2_2:39640876-39640895 Msa0250650:intron 25.0%
! AAATCAAACAGCAAATACAA+CGG - chr2_2:39641100-39641119 None:intergenic 25.0%
! CTTGTTCTTAGTTTATTCAT+TGG + chr2_2:39641301-39641320 Msa0250650:intron 25.0%
! AAAAACAGAAAACATGGTTA+GGG - chr2_2:39641524-39641543 None:intergenic 25.0%
! TATCAGAAAAACAGAAAACA+TGG - chr2_2:39641530-39641549 None:intergenic 25.0%
! TTCAAACATGGTTTATGAAA+TGG - chr2_2:39641576-39641595 None:intergenic 25.0%
!!! GCTTCATTTTCAAGTAAAAA+TGG - chr2_2:39641622-39641641 None:intergenic 25.0%
! ATACAGATAAGGAACAATTT+GGG - chr2_2:39641801-39641820 None:intergenic 25.0%
! TATACAGATAAGGAACAATT+TGG - chr2_2:39641802-39641821 None:intergenic 25.0%
! ATGGATCAGAAATATAGTTA+AGG + chr2_2:39641878-39641897 Msa0250650:CDS 25.0%
! AGAAATATAGTTAAGGAGTT+TGG + chr2_2:39641885-39641904 Msa0250650:CDS 25.0%
! AATTGTTCTGTACTTATGTT+TGG - chr2_2:39641915-39641934 None:intergenic 25.0%
!!! TTTTCTATTTTTGGATTTGC+AGG + chr2_2:39642762-39642781 Msa0250650:intron 25.0%
!!! TTTAATTTTTGACACCTGAA+AGG - chr2_2:39642988-39643007 None:intergenic 25.0%
! TTCTTTGTGGAATTTCTAAT+GGG + chr2_2:39643115-39643134 Msa0250650:intron 25.0%
! AAAAACTACGCCATAAAAAA+AGG - chr2_2:39643280-39643299 None:intergenic 25.0%
! CTAAAATACAATGAAAGGAA+GGG - chr2_2:39643817-39643836 None:intergenic 25.0%
! ACTAAAATACAATGAAAGGA+AGG - chr2_2:39643818-39643837 None:intergenic 25.0%
!! ATAAATGGTGCTTTAATTTC+AGG - chr2_2:39643928-39643947 None:intergenic 25.0%
! TTGAGAATATGTTGGTATTT+AGG + chr2_2:39644084-39644103 Msa0250650:three_prime_UTR 25.0%
! ATATGTTGGTATTTAGGAAA+AGG + chr2_2:39644090-39644109 Msa0250650:three_prime_UTR 25.0%
! TATGTTGGTATTTAGGAAAA+GGG + chr2_2:39644091-39644110 Msa0250650:three_prime_UTR 25.0%
!!! GAATAAAGGCATTATTGTTT+TGG + chr2_2:39644185-39644204 Msa0250650:three_prime_UTR 25.0%
!!! ATAAAGGCATTATTGTTTTG+GGG + chr2_2:39644187-39644206 Msa0250650:three_prime_UTR 25.0%
! CTATTTAGAAAGAATACAGA+GGG - chr2_2:39644217-39644236 None:intergenic 25.0%
ATAGAGAATCAAAACGATGA+AGG - chr2_2:39635485-39635504 None:intergenic 30.0%
!! CTCTCATCATTCTAAAATTG+TGG + chr2_2:39636375-39636394 Msa0250650:intron 30.0%
! ATTCTTTTAAGCACAAACAC+CGG + chr2_2:39636416-39636435 Msa0250650:intron 30.0%
! ATTATGAATTTTGCTGACAG+AGG + chr2_2:39636973-39636992 Msa0250650:intron 30.0%
! TTATGAATTTTGCTGACAGA+GGG + chr2_2:39636974-39636993 Msa0250650:intron 30.0%
!!! GCATTTTTAAGTTTTGGCAT+TGG + chr2_2:39637068-39637087 Msa0250650:intron 30.0%
TACTCCTGATACATAAATGT+GGG + chr2_2:39637196-39637215 Msa0250650:intron 30.0%
ATAAGCTGTTTATCCAAACA+GGG - chr2_2:39637255-39637274 None:intergenic 30.0%
AATAAGCTGTTTATCCAAAC+AGG - chr2_2:39637256-39637275 None:intergenic 30.0%
! TAGATTTTGTGAGACAGTTT+GGG - chr2_2:39637469-39637488 None:intergenic 30.0%
! ATAGATTTTGTGAGACAGTT+TGG - chr2_2:39637470-39637489 None:intergenic 30.0%
!!! CTTGGAGTGTTTTAATTATC+TGG + chr2_2:39637529-39637548 Msa0250650:intron 30.0%
AACTACAACTAAATGCACAT+TGG - chr2_2:39637610-39637629 None:intergenic 30.0%
TTTAATCTTGGCATAAAACC+TGG + chr2_2:39637694-39637713 Msa0250650:intron 30.0%
TAAGTTACATTGCAAGCTTA+TGG - chr2_2:39637867-39637886 None:intergenic 30.0%
! TTCCTTTTGTAATCATGTCT+TGG + chr2_2:39638526-39638545 Msa0250650:intron 30.0%
TACCAAGACATGATTACAAA+AGG - chr2_2:39638531-39638550 None:intergenic 30.0%
TGGGTATATGATATGAACTA+GGG + chr2_2:39638736-39638755 Msa0250650:intron 30.0%
! TAGTAAATTTATAGGCATCG+CGG + chr2_2:39638801-39638820 Msa0250650:intron 30.0%
! TTGTTCTTTTGATGTGTATG+TGG + chr2_2:39638842-39638861 Msa0250650:intron 30.0%
TACATTGTTTATGATGCACA+TGG + chr2_2:39639021-39639040 Msa0250650:intron 30.0%
!!! ATTTTAGCTCAGAAAATTGG+AGG + chr2_2:39639431-39639450 Msa0250650:intron 30.0%
ATTAATTGAACTCTTGCATG+AGG - chr2_2:39639626-39639645 None:intergenic 30.0%
! TATCGATAATCGTAGCATTT+TGG + chr2_2:39639688-39639707 Msa0250650:intron 30.0%
! ATCGATAATCGTAGCATTTT+GGG + chr2_2:39639689-39639708 Msa0250650:intron 30.0%
GGTTAATTCTCTTTCTTCAT+TGG - chr2_2:39639848-39639867 None:intergenic 30.0%
ATGAAGAAAGAGAATTAACC+GGG + chr2_2:39639848-39639867 Msa0250650:intron 30.0%
ATATACATAGGAAAGAGAAC+AGG - chr2_2:39639934-39639953 None:intergenic 30.0%
AAACTTACTTTAGATGGACA+TGG - chr2_2:39639978-39639997 None:intergenic 30.0%
AGGAAGAAACTTACTTTAGA+TGG - chr2_2:39639984-39640003 None:intergenic 30.0%
!!! AGTTTCTTCCTTTTTTGAAG+AGG + chr2_2:39639993-39640012 Msa0250650:intron 30.0%
!!! GTTTCTTCCTTTTTTGAAGA+GGG + chr2_2:39639994-39640013 Msa0250650:intron 30.0%
GATCTAAGTGTGTATAAATG+TGG + chr2_2:39640140-39640159 Msa0250650:intron 30.0%
ATCCAGAAGTTTCAATTAGT+GGG - chr2_2:39640489-39640508 None:intergenic 30.0%
! CTCTCATCCTTTTAACATTT+TGG + chr2_2:39640836-39640855 Msa0250650:intron 30.0%
! CATCCTTTTAACATTTTGGA+TGG + chr2_2:39640840-39640859 Msa0250650:intron 30.0%
TAATCCAAAGAATCATCCAA+TGG - chr2_2:39640912-39640931 None:intergenic 30.0%
TTGGATGATTCTTTGGATTA+TGG + chr2_2:39640912-39640931 Msa0250650:CDS 30.0%
ATAATAACAACCGGAATCAA+AGG - chr2_2:39641356-39641375 None:intergenic 30.0%
TATTCTATTGTGTTCACTTC+AGG + chr2_2:39641391-39641410 Msa0250650:intron 30.0%
GAAAAACAGAAAACATGGTT+AGG - chr2_2:39641525-39641544 None:intergenic 30.0%
GTAAAAATGGCAAATATGAC+AGG - chr2_2:39641609-39641628 None:intergenic 30.0%
! CAAAACTTTTCAGCAATACA+AGG - chr2_2:39641713-39641732 None:intergenic 30.0%
ATTCATAAAACTCTGAACAG+TGG + chr2_2:39641945-39641964 Msa0250650:CDS 30.0%
TTCATATCAGTTACATTACC+TGG - chr2_2:39641971-39641990 None:intergenic 30.0%
AACAAAAGCTAAAAAGGAAG+AGG - chr2_2:39642020-39642039 None:intergenic 30.0%
CAAGGAAACAAAAGCTAAAA+AGG - chr2_2:39642026-39642045 None:intergenic 30.0%
!!! AAAGGATTTTTTTTGGCTGA+AGG + chr2_2:39642238-39642257 Msa0250650:intron 30.0%
!!! AAGGATTTTTTTTGGCTGAA+GGG + chr2_2:39642239-39642258 Msa0250650:intron 30.0%
!!! CTCCTTGTTTTACATGTATA+TGG + chr2_2:39642279-39642298 Msa0250650:intron 30.0%
GTCCATATACATGTAAAACA+AGG - chr2_2:39642284-39642303 None:intergenic 30.0%
TCTAATTATTGGATTGTCCT+CGG - chr2_2:39642415-39642434 None:intergenic 30.0%
TACAAGCCAAACCATTAAAA+AGG + chr2_2:39642458-39642477 Msa0250650:intron 30.0%
! CGAAATCCTTTTTAATGGTT+TGG - chr2_2:39642467-39642486 None:intergenic 30.0%
AAATTGAGAAAAATACCAGC+TGG - chr2_2:39642888-39642907 None:intergenic 30.0%
TCAGGTGTCAAAAATTAAAG+AGG + chr2_2:39642989-39643008 Msa0250650:intron 30.0%
! TTTAGTTCCCAATCTTGAAA+TGG + chr2_2:39643092-39643111 Msa0250650:intron 30.0%
CAAAGAACCATTTCAAGATT+GGG - chr2_2:39643102-39643121 None:intergenic 30.0%
ACAAAGAACCATTTCAAGAT+TGG - chr2_2:39643103-39643122 None:intergenic 30.0%
AATCTTGAAATGGTTCTTTG+TGG + chr2_2:39643102-39643121 Msa0250650:intron 30.0%
GTTCTTTGTGGAATTTCTAA+TGG + chr2_2:39643114-39643133 Msa0250650:intron 30.0%
! ATTCCTGCATCAAATTTTGA+TGG + chr2_2:39643453-39643472 Msa0250650:intron 30.0%
TATTCAGTACATCTGGTATA+AGG - chr2_2:39643480-39643499 None:intergenic 30.0%
!!! TGCTCACTTGCTATTTTTAT+AGG + chr2_2:39643506-39643525 Msa0250650:intron 30.0%
!!! TATTTTAGTTGATATGGGAC+CGG + chr2_2:39643829-39643848 Msa0250650:intron 30.0%
CTTAGCAATCAACAGATAAA+TGG - chr2_2:39643943-39643962 None:intergenic 30.0%
ATAACCAGAAAAATAAGGGA+GGG - chr2_2:39644046-39644065 None:intergenic 30.0%
AATAACCAGAAAAATAAGGG+AGG - chr2_2:39644047-39644066 None:intergenic 30.0%
ATATTCTCAATCAGAACATG+CGG - chr2_2:39644074-39644093 None:intergenic 30.0%
TGTTCTGATTGAGAATATGT+TGG + chr2_2:39644076-39644095 Msa0250650:three_prime_UTR 30.0%
! TTTTCTGCACAGCATAAATT+AGG + chr2_2:39644146-39644165 Msa0250650:three_prime_UTR 30.0%
CCTATTTAGAAAGAATACAG+AGG - chr2_2:39644218-39644237 None:intergenic 30.0%
CCTCTGTATTCTTTCTAAAT+AGG + chr2_2:39644215-39644234 Msa0250650:three_prime_UTR 30.0%
! ACTCGTATTTTTCGTCAAAA+GGG - chr2_2:39644247-39644266 None:intergenic 30.0%
! AACTCGTATTTTTCGTCAAA+AGG - chr2_2:39644248-39644267 None:intergenic 30.0%
ATGAGTTTACTTGAAGTTTG+TGG + chr2_2:39644278-39644297 Msa0250650:three_prime_UTR 30.0%
GATGAAAGATCGATCAATGA+TGG - chr2_2:39635516-39635535 None:intergenic 35.0%
GATGAATCAATAGAACAAGC+TGG - chr2_2:39635625-39635644 None:intergenic 35.0%
!! TGATGATGATTTTTGATGGC+AGG + chr2_2:39635801-39635820 Msa0250650:intron 35.0%
!! GATGATGATTTTTGATGGCA+GGG + chr2_2:39635802-39635821 Msa0250650:intron 35.0%
TTGAACGTAATCACATGTGT+TGG + chr2_2:39636682-39636701 Msa0250650:intron 35.0%
!! ACACTTTTGATCAGAAGTGT+CGG + chr2_2:39636805-39636824 Msa0250650:intron 35.0%
ACTGTTATTACCGTGTAGTT+TGG + chr2_2:39636854-39636873 Msa0250650:intron 35.0%
! TATGAATTTTGCTGACAGAG+GGG + chr2_2:39636975-39636994 Msa0250650:intron 35.0%
! GGTTATTTGTTCTGTTTTGC+AGG + chr2_2:39636996-39637015 Msa0250650:intron 35.0%
! GGATCTTTTTACTGAGATGA+AGG + chr2_2:39637017-39637036 Msa0250650:intron 35.0%
!!! GGCATTGGTACTTTTTTTGT+TGG + chr2_2:39637083-39637102 Msa0250650:intron 35.0%
!! TAATATATGCCGCTTTGTTG+TGG + chr2_2:39637119-39637138 Msa0250650:intron 35.0%
GTACTCCTGATACATAAATG+TGG + chr2_2:39637195-39637214 Msa0250650:intron 35.0%
!! GGGCTTCATAGTTTTACTAT+TGG + chr2_2:39637216-39637235 Msa0250650:intron 35.0%
!!! ACATAGTTTTAGACCCTGTT+TGG + chr2_2:39637239-39637258 Msa0250650:intron 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG + chr2_2:39637378-39637397 Msa0250650:intron 35.0%
TCAAAAAAGCCAATCCAATC+AGG + chr2_2:39637504-39637523 Msa0250650:intron 35.0%
CAAAAAAGCCAATCCAATCA+GGG + chr2_2:39637505-39637524 Msa0250650:intron 35.0%
! AATTATCTGGTTGTAATGGG+TGG + chr2_2:39637542-39637561 Msa0250650:intron 35.0%
TAAATGAAGTCCCACTTTCT+TGG + chr2_2:39637841-39637860 Msa0250650:intron 35.0%
!! TCTGATTAAAAGGTACTTGG+TGG + chr2_2:39637904-39637923 Msa0250650:intron 35.0%
!!! TTTTTCAGGGAATTCGCTTT+AGG + chr2_2:39638124-39638143 Msa0250650:intron 35.0%
!! TTTTCAGGGAATTCGCTTTA+GGG + chr2_2:39638125-39638144 Msa0250650:intron 35.0%
TGTCAAAAGAAGCCACAATA+TGG - chr2_2:39638220-39638239 None:intergenic 35.0%
! ATATTGTGGCTTCTTTTGAC+AGG + chr2_2:39638219-39638238 Msa0250650:CDS 35.0%
GTACCAAAACACTTTCATAC+AGG - chr2_2:39638321-39638340 None:intergenic 35.0%
GTACCAAAACACTTTCATAC+AGG - chr2_2:39638321-39638340 None:intergenic 35.0%
TATTTGGTATCTGTGACACA+AGG - chr2_2:39638446-39638465 None:intergenic 35.0%
GATACCAAATAAAGAGCAAG+TGG + chr2_2:39638455-39638474 Msa0250650:intron 35.0%
GAATCCACTTGCTCTTTATT+TGG - chr2_2:39638462-39638481 None:intergenic 35.0%
TGTAATCATGTCTTGGTATC+TGG + chr2_2:39638533-39638552 Msa0250650:intron 35.0%
CATAACCATGACATTCAACT+TGG - chr2_2:39638596-39638615 None:intergenic 35.0%
TCATAGGCACTATACTTAAG+AGG + chr2_2:39638651-39638670 Msa0250650:intron 35.0%
GACACAAAATAGACAATGCA+TGG + chr2_2:39638699-39638718 Msa0250650:intron 35.0%
CATGGCAATATGTTAAGACT+GGG + chr2_2:39638717-39638736 Msa0250650:intron 35.0%
CTGGGTATATGATATGAACT+AGG + chr2_2:39638735-39638754 Msa0250650:intron 35.0%
GGGTATATGATATGAACTAG+GGG + chr2_2:39638737-39638756 Msa0250650:intron 35.0%
ATTTGCAGAGTATGCTTACA+AGG + chr2_2:39639073-39639092 Msa0250650:intron 35.0%
ACAATTCACTACTGGTGTAA+TGG + chr2_2:39639133-39639152 Msa0250650:CDS 35.0%
AAAGAATCTGTTACTCAACC+TGG - chr2_2:39639163-39639182 None:intergenic 35.0%
CTGACTACCATAATCATTCA+TGG + chr2_2:39639246-39639265 Msa0250650:intron 35.0%
CGAGTTTCCATGAATGATTA+TGG - chr2_2:39639256-39639275 None:intergenic 35.0%
!!! TTCCTTTTTTGAAGAGGGAA+AGG + chr2_2:39639999-39640018 Msa0250650:intron 35.0%
CTTGTAATGACACACATGAA+CGG + chr2_2:39640118-39640137 Msa0250650:intron 35.0%
ACAGACTAAATAAGCTAGTG+TGG - chr2_2:39640174-39640193 None:intergenic 35.0%
!!! GGACAAGACTTCATTTTTTG+TGG - chr2_2:39640227-39640246 None:intergenic 35.0%
GATCCAGAAGTTTCAATTAG+TGG - chr2_2:39640490-39640509 None:intergenic 35.0%
! GAATTTACAAAGGCATACGA+GGG + chr2_2:39640565-39640584 Msa0250650:CDS 35.0%
AAACGCTACAGTAGCTTATA+AGG - chr2_2:39640639-39640658 None:intergenic 35.0%
TTCAAGCTATCCTCATAAGT+TGG - chr2_2:39640689-39640708 None:intergenic 35.0%
AATTTAATTGCTCGTTTGCC+TGG + chr2_2:39640707-39640726 Msa0250650:CDS 35.0%
TAAATGTAAGCAGCAATTCC+AGG - chr2_2:39640728-39640747 None:intergenic 35.0%
! TTGCTGCTTACATTTATCGA+CGG + chr2_2:39640732-39640751 Msa0250650:CDS 35.0%
GGATGGAAAAATCATACCAT+TGG + chr2_2:39640893-39640912 Msa0250650:CDS 35.0%
CATACCATTGGATGATTCTT+TGG + chr2_2:39640905-39640924 Msa0250650:CDS 35.0%
! CATGTTAGGATTTGATGATC+CGG + chr2_2:39640950-39640969 Msa0250650:CDS 35.0%
CTCATAAACTCAAGCATTTC+CGG - chr2_2:39640972-39640991 None:intergenic 35.0%
CAATCAAAATTGCAACTGGA+TGG - chr2_2:39641222-39641241 None:intergenic 35.0%
!! CATCCAGTTGCAATTTTGAT+TGG + chr2_2:39641220-39641239 Msa0250650:intron 35.0%
TCACCAATCAAAATTGCAAC+TGG - chr2_2:39641226-39641245 None:intergenic 35.0%
TGATTCCTGAGAGAATAGTA+TGG + chr2_2:39641327-39641346 Msa0250650:intron 35.0%
ATGAAATGGAAGAGGAAATG+TGG - chr2_2:39641562-39641581 None:intergenic 35.0%
CATGGTTTATGAAATGGAAG+AGG - chr2_2:39641570-39641589 None:intergenic 35.0%
ACAGCAAATACTAGTAATGC+AGG - chr2_2:39641648-39641667 None:intergenic 35.0%
AACTTCCTGTAACAACGTAT+TGG - chr2_2:39641853-39641872 None:intergenic 35.0%
AAAGCTAAAAAGGAAGAGGA+AGG - chr2_2:39642016-39642035 None:intergenic 35.0%
AATTCAGTAGTGTAGATCAG+AGG + chr2_2:39642129-39642148 Msa0250650:intron 35.0%
TTGGAAACTTTCTCTTGAGA+AGG - chr2_2:39642320-39642339 None:intergenic 35.0%
!! AATTATAAGTTAGAGTGCCG+AGG + chr2_2:39642395-39642414 Msa0250650:intron 35.0%
GAGGACAATCCAATAATTAG+AGG + chr2_2:39642414-39642433 Msa0250650:intron 35.0%
GACAATCCAATAATTAGAGG+TGG + chr2_2:39642417-39642436 Msa0250650:intron 35.0%
AATCCAATAATTAGAGGTGG+AGG + chr2_2:39642420-39642439 Msa0250650:intron 35.0%
ATCCAATAATTAGAGGTGGA+GGG + chr2_2:39642421-39642440 Msa0250650:intron 35.0%
! ACGTCAAAGCTTTGTATAGT+TGG + chr2_2:39642520-39642539 Msa0250650:intron 35.0%
ATTAGATAGAGCCAGTTACA+TGG - chr2_2:39642551-39642570 None:intergenic 35.0%
!! ATGTAACTGGCTCTATCTAA+TGG + chr2_2:39642550-39642569 Msa0250650:intron 35.0%
GGCTTCTCAATAGAAGAATT+TGG - chr2_2:39642717-39642736 None:intergenic 35.0%
! CAGCAGGGTTTTTCTATTTT+TGG + chr2_2:39642753-39642772 Msa0250650:intron 35.0%
AAAAATACCAGCTGGAAAAG+TGG - chr2_2:39642880-39642899 None:intergenic 35.0%
!! TTCTGTGTGGAGTATTTTGT+TGG + chr2_2:39643178-39643197 Msa0250650:intron 35.0%
ATTTGATGAAGACTCAAGAG+AGG + chr2_2:39643215-39643234 Msa0250650:intron 35.0%
!!! ATGGCGTAGTTTTTGTTTTG+AGG + chr2_2:39643286-39643305 Msa0250650:intron 35.0%
!!! CGTAGTTTTTGTTTTGAGGA+TGG + chr2_2:39643290-39643309 Msa0250650:intron 35.0%
TAGACTTTCACGTATTAGCT+TGG + chr2_2:39643356-39643375 Msa0250650:intron 35.0%
AAGTGAGTATTCAGTACATC+TGG - chr2_2:39643487-39643506 None:intergenic 35.0%
AGCTATTATACCGTTCTCTT+TGG + chr2_2:39643698-39643717 Msa0250650:intron 35.0%
ACCTTTGCAAGGAAATAACA+GGG - chr2_2:39643765-39643784 None:intergenic 35.0%
AACCTTTGCAAGGAAATAAC+AGG - chr2_2:39643766-39643785 None:intergenic 35.0%
CAAATAGAGTAACCTTTGCA+AGG - chr2_2:39643776-39643795 None:intergenic 35.0%
GCAAAGGTTACTCTATTTGT+TGG + chr2_2:39643777-39643796 Msa0250650:intron 35.0%
!!! ATTTTAGTTGATATGGGACC+GGG + chr2_2:39643830-39643849 Msa0250650:intron 35.0%
ACTGGAGAAACTTGAGAAAT+TGG + chr2_2:39643890-39643909 Msa0250650:CDS 35.0%
GAGAAACTTGAGAAATTGGT+CGG + chr2_2:39643894-39643913 Msa0250650:CDS 35.0%
TTGATTGCTAAGATACACTC+TGG + chr2_2:39643951-39643970 Msa0250650:three_prime_UTR 35.0%
ATACACTCTGGTGATATGTA+GGG + chr2_2:39643963-39643982 Msa0250650:three_prime_UTR 35.0%
TAACCAGAAAAATAAGGGAG+GGG - chr2_2:39644045-39644064 None:intergenic 35.0%
! CTCGTATTTTTCGTCAAAAG+GGG - chr2_2:39644246-39644265 None:intergenic 35.0%
!! AAAGAGAGAAGAGCGTTTAC+CGG - chr2_2:39635423-39635442 None:intergenic 40.0%
ATTGAGAAGTAGCTAGGGTT+TGG - chr2_2:39635458-39635477 None:intergenic 40.0%
GTGAGATTGAGAAGTAGCTA+GGG - chr2_2:39635463-39635482 None:intergenic 40.0%
CTAACTGAATTAGCGAGACT+AGG - chr2_2:39635835-39635854 None:intergenic 40.0%
GTCTCGCTAATTCAGTTAGA+TGG + chr2_2:39635836-39635855 Msa0250650:CDS 40.0%
ATGTCATACAGTGTTAGTGG+AGG - chr2_2:39635875-39635894 None:intergenic 40.0%
GAGATGTCATACAGTGTTAG+TGG - chr2_2:39635878-39635897 None:intergenic 40.0%
!! TGTCAATTAAGCACTGACAC+CGG + chr2_2:39636517-39636536 Msa0250650:intron 40.0%
ATGAACGTAAGCACATGTGT+CGG + chr2_2:39636586-39636605 Msa0250650:intron 40.0%
! CGTCTGATGAAAGGTGTATT+CGG - chr2_2:39636734-39636753 None:intergenic 40.0%
TCGCTTTAACCACAACAAAG+CGG - chr2_2:39637131-39637150 None:intergenic 40.0%
AACTCAGAGTATGCAGTTGA+AGG - chr2_2:39637170-39637189 None:intergenic 40.0%
TCAACTGCATACTCTGAGTT+AGG + chr2_2:39637170-39637189 Msa0250650:intron 40.0%
GAAGCCCACATTTATGTATC+AGG - chr2_2:39637203-39637222 None:intergenic 40.0%
TTGGCATAAAACCTGGTTGT+AGG + chr2_2:39637701-39637720 Msa0250650:intron 40.0%
AAGAAGCTGAAGAAAGAGCA+TGG + chr2_2:39637732-39637751 Msa0250650:CDS 40.0%
!! AGAGCATGGAAGTGTTGAAT+TGG + chr2_2:39637746-39637765 Msa0250650:CDS 40.0%
!! GAGCATGGAAGTGTTGAATT+GGG + chr2_2:39637747-39637766 Msa0250650:CDS 40.0%
GGGAAAAATCACTGCTGATA+TGG + chr2_2:39637767-39637786 Msa0250650:CDS 40.0%
AAGCTTATGGCCAAGAAAGT+GGG - chr2_2:39637854-39637873 None:intergenic 40.0%
TTTCAGGGAATTCGCTTTAG+GGG + chr2_2:39638126-39638145 Msa0250650:intron 40.0%
!!! CAGCCTGTATGAAAGTGTTT+TGG + chr2_2:39638315-39638334 Msa0250650:intron 40.0%
!!! CAGCCTGTATGAAAGTGTTT+TGG + chr2_2:39638315-39638334 Msa0250650:intron 40.0%
GCATGGCAATATGTTAAGAC+TGG + chr2_2:39638716-39638735 Msa0250650:intron 40.0%
!! GAAACGCTCACTGATTTCTA+AGG + chr2_2:39638877-39638896 Msa0250650:intron 40.0%
ACCAAGAGCAAGTAGAATGT+TGG - chr2_2:39638961-39638980 None:intergenic 40.0%
!! ATGCACATGGCTCTAAATTG+TGG + chr2_2:39639034-39639053 Msa0250650:intron 40.0%
CCAGTAGTGAATTGTGTCAT+TGG - chr2_2:39639128-39639147 None:intergenic 40.0%
CCAATGACACAATTCACTAC+TGG + chr2_2:39639125-39639144 Msa0250650:CDS 40.0%
AATCTGTTACTCAACCTGGA+GGG - chr2_2:39639159-39639178 None:intergenic 40.0%
AGGAAGGCCTTAAAAATCAG+TGG - chr2_2:39639192-39639211 None:intergenic 40.0%
AATCAAAGGGTGATAGGTAG+TGG + chr2_2:39639403-39639422 Msa0250650:intron 40.0%
TTTGCTGAGATTAGACAGAG+TGG - chr2_2:39639501-39639520 None:intergenic 40.0%
! TGTCAGGTGAGTTTTTGTGA+GGG - chr2_2:39639573-39639592 None:intergenic 40.0%
! ATGTCAGGTGAGTTTTTGTG+AGG - chr2_2:39639574-39639593 None:intergenic 40.0%
! TCCTTTGCATCTAGTTTCTG+TGG + chr2_2:39639716-39639735 Msa0250650:intron 40.0%
ACCACAGAAACTAGATGCAA+AGG - chr2_2:39639720-39639739 None:intergenic 40.0%
ATGTGCATTAGAGACGAAGT+AGG - chr2_2:39639817-39639836 None:intergenic 40.0%
TACATAGGAAAGAGAACAGG+AGG - chr2_2:39639931-39639950 None:intergenic 40.0%
CTCCTTTCCCTCTTCAAAAA+AGG - chr2_2:39640004-39640023 None:intergenic 40.0%
!!! CTTTTTTGAAGAGGGAAAGG+AGG + chr2_2:39640002-39640021 Msa0250650:intron 40.0%
CTCCCACTAATTGAAACTTC+TGG + chr2_2:39640484-39640503 Msa0250650:intron 40.0%
AATGAGTCTGTCATCAGGAA+CGG - chr2_2:39640512-39640531 None:intergenic 40.0%
TTGAGAATGAGTCTGTCATC+AGG - chr2_2:39640517-39640536 None:intergenic 40.0%
! CGAATTTACAAAGGCATACG+AGG + chr2_2:39640564-39640583 Msa0250650:CDS 40.0%
GCAAACTATGCTCACATGTT+AGG + chr2_2:39640936-39640955 Msa0250650:CDS 40.0%
CGGAAATGCTTGAGTTTATG+AGG + chr2_2:39640970-39640989 Msa0250650:CDS 40.0%
ATGAATGGAACACAAACCTG+TGG - chr2_2:39641010-39641029 None:intergenic 40.0%
CAGCTCATCATGATCATAAG+AGG - chr2_2:39641043-39641062 None:intergenic 40.0%
TTCATGTGCAGTGATCATGA+AGG + chr2_2:39641138-39641157 Msa0250650:intron 40.0%
AGTATGGTGTCCTTTGATTC+CGG + chr2_2:39641343-39641362 Msa0250650:intron 40.0%
GGTCAGAGACTATTCAAACA+TGG - chr2_2:39641588-39641607 None:intergenic 40.0%
CACATCCAATACGTTGTTAC+AGG + chr2_2:39641845-39641864 Msa0250650:intron 40.0%
TGTTACAGGAAGTTCTACGA+TGG + chr2_2:39641859-39641878 Msa0250650:intron 40.0%
! TACAAAGCTTTGACGTGCAT+TGG - chr2_2:39642516-39642535 None:intergenic 40.0%
AGTTGGTTGATCCATGTAAC+TGG + chr2_2:39642537-39642556 Msa0250650:intron 40.0%
! AGAATTTGGAACTGAGACAG+TGG - chr2_2:39642703-39642722 None:intergenic 40.0%
AAAACTCCATGTCCATATCC+AGG - chr2_2:39642793-39642812 None:intergenic 40.0%
AGCTGGAAAAGTGGATCATT+AGG - chr2_2:39642871-39642890 None:intergenic 40.0%
!! TAATGATCCACTTTTCCAGC+TGG + chr2_2:39642870-39642889 Msa0250650:CDS 40.0%
ATACTCTCGAAGTTCGTTTC+TGG + chr2_2:39642928-39642947 Msa0250650:intron 40.0%
TGTGACTTTGTGATCCTTTC+AGG + chr2_2:39642971-39642990 Msa0250650:intron 40.0%
TTGCCTAACTTGGTCAGAAT+AGG - chr2_2:39643023-39643042 None:intergenic 40.0%
TATTCTGACCAAGTTAGGCA+AGG + chr2_2:39643022-39643041 Msa0250650:CDS 40.0%
TGACATTACCTTGCCTAACT+TGG - chr2_2:39643033-39643052 None:intergenic 40.0%
ACAGAACTCACAATGATCAG+CGG - chr2_2:39643164-39643183 None:intergenic 40.0%
TGATCATTGTGAGTTCTGTG+TGG + chr2_2:39643165-39643184 Msa0250650:intron 40.0%
GGTCCATCAAAATTTGATGC+AGG - chr2_2:39643459-39643478 None:intergenic 40.0%
! GGAGTACTACTGAACTACTA+TGG + chr2_2:39643564-39643583 Msa0250650:CDS 40.0%
GAACTACTATGGTCTAACTG+AGG + chr2_2:39643575-39643594 Msa0250650:CDS 40.0%
!! ACACTTTTTGGCCTTTCAAG+TGG - chr2_2:39643867-39643886 None:intergenic 40.0%
! TTCTCCAGTGTGACACTTTT+TGG - chr2_2:39643879-39643898 None:intergenic 40.0%
GATACACTCTGGTGATATGT+AGG + chr2_2:39643962-39643981 Msa0250650:three_prime_UTR 40.0%
GTTGGTATTTAGGAAAAGGG+TGG + chr2_2:39644094-39644113 Msa0250650:three_prime_UTR 40.0%
ACAGCATAAATTAGGTCCCA+AGG + chr2_2:39644154-39644173 Msa0250650:three_prime_UTR 40.0%
CAGCATAAATTAGGTCCCAA+GGG + chr2_2:39644155-39644174 Msa0250650:three_prime_UTR 40.0%
CTTTATTCTGATGCTCCCTT+GGG - chr2_2:39644173-39644192 None:intergenic 40.0%
GGTGAGATTGAGAAGTAGCT+AGG - chr2_2:39635464-39635483 None:intergenic 45.0%
TACCAACATGTGTCAGACTC+CGG + chr2_2:39636616-39636635 Msa0250650:intron 45.0%
! TCGGAGACACTGACACATTT+TGG - chr2_2:39636715-39636734 None:intergenic 45.0%
! GCATTGACACGTCTGATGAA+AGG - chr2_2:39636743-39636762 None:intergenic 45.0%
! GGAACTAGTTCCAGAGTATC+AGG + chr2_2:39637038-39637057 Msa0250650:CDS 45.0%
TGCAGACAAACCTGATACTC+TGG - chr2_2:39637051-39637070 None:intergenic 45.0%
AAACACTCCAAGACCCTGAT+TGG - chr2_2:39637521-39637540 None:intergenic 45.0%
CTTAACACGTTCCTACAACC+AGG - chr2_2:39637715-39637734 None:intergenic 45.0%
CAAGCTTATGGCCAAGAAAG+TGG - chr2_2:39637855-39637874 None:intergenic 45.0%
! AAGGTACTTGGTGGAATGAG+AGG + chr2_2:39637913-39637932 Msa0250650:intron 45.0%
! GAGGAATGACAGCTTTAGTG+TGG + chr2_2:39637932-39637951 Msa0250650:CDS 45.0%
! ATGACAGCTTTAGTGTGGCT+AGG + chr2_2:39637937-39637956 Msa0250650:CDS 45.0%
!!! GGAAGTGTTTTCTGACAGTC+AGG - chr2_2:39638162-39638181 None:intergenic 45.0%
GACTGTCAGAAAACACTTCC+AGG + chr2_2:39638162-39638181 Msa0250650:CDS 45.0%
! GTGGCTTCTTTTGACAGGAA+AGG + chr2_2:39638224-39638243 Msa0250650:CDS 45.0%
!!! GTGTTTTGGTACATGCTCTG+TGG + chr2_2:39638329-39638348 Msa0250650:intron 45.0%
!!! GTGTTTTGGTACATGCTCTG+TGG + chr2_2:39638329-39638348 Msa0250650:intron 45.0%
GTGACACAAGGTATGAATCG+AGG - chr2_2:39638434-39638453 None:intergenic 45.0%
! GCAAGTGGATTCATTAGCTC+AGG + chr2_2:39638470-39638489 Msa0250650:CDS 45.0%
! AGCGTCCAAGTTGAATGTCA+TGG + chr2_2:39638588-39638607 Msa0250650:intron 45.0%
TATGAACTAGGGGTCTCTCA+TGG + chr2_2:39638747-39638766 Msa0250650:intron 45.0%
! GTGTATGTGGTCCTTGTTTG+AGG + chr2_2:39638855-39638874 Msa0250650:intron 45.0%
AGTGAGCGTTTCCTCAAACA+AGG - chr2_2:39638869-39638888 None:intergenic 45.0%
GCCAACATTCTACTTGCTCT+TGG + chr2_2:39638957-39638976 Msa0250650:intron 45.0%
GTCATTGGATGAGCAGAAAC+AGG - chr2_2:39639113-39639132 None:intergenic 45.0%
GAATCTGTTACTCAACCTGG+AGG - chr2_2:39639160-39639179 None:intergenic 45.0%
! TCAGGTGAGTTTTTGTGAGG+GGG - chr2_2:39639571-39639590 None:intergenic 45.0%
! GTCAGGTGAGTTTTTGTGAG+GGG - chr2_2:39639572-39639591 None:intergenic 45.0%
GCAGTCACGAAAAACATGTC+AGG - chr2_2:39639589-39639608 None:intergenic 45.0%
! GACATGTTTTTCGTGACTGC+TGG + chr2_2:39639589-39639608 Msa0250650:intron 45.0%
GGTGGAGAGCGAATTTACAA+AGG + chr2_2:39640555-39640574 Msa0250650:intron 45.0%
! TTTACAAAGGCATACGAGGG+TGG + chr2_2:39640568-39640587 Msa0250650:CDS 45.0%
! TTACAAAGGCATACGAGGGT+GGG + chr2_2:39640569-39640588 Msa0250650:CDS 45.0%
AGGGTGGGATACATAAGTCA+AGG + chr2_2:39640584-39640603 Msa0250650:CDS 45.0%
!! ACTGTAGCGTTTTTGCTGTG+TGG + chr2_2:39640647-39640666 Msa0250650:intron 45.0%
!! CTGTAGCGTTTTTGCTGTGT+GGG + chr2_2:39640648-39640667 Msa0250650:intron 45.0%
!! CGTTTTTGCTGTGTGGGTAT+AGG + chr2_2:39640654-39640673 Msa0250650:intron 45.0%
TGCTGTGTGGGTATAGGTAT+TGG + chr2_2:39640660-39640679 Msa0250650:intron 45.0%
GCTGTGTGGGTATAGGTATT+GGG + chr2_2:39640661-39640680 Msa0250650:intron 45.0%
GTATTGGGAGCCAACTTATG+AGG + chr2_2:39640676-39640695 Msa0250650:CDS 45.0%
! GGCTGTATGTTTCTATCCAC+AGG + chr2_2:39640991-39641010 Msa0250650:CDS 45.0%
AGAGGTGACGTCGTTATGAA+TGG - chr2_2:39641025-39641044 None:intergenic 45.0%
ATGTGCAGTGATCATGAAGG+CGG + chr2_2:39641141-39641160 Msa0250650:intron 45.0%
GGACACCATACTATTCTCTC+AGG - chr2_2:39641335-39641354 None:intergenic 45.0%
GCAGCTGCAAATGCAAGATA+AGG - chr2_2:39641437-39641456 None:intergenic 45.0%
! GATTGGCTAAACCATGCAGT+GGG - chr2_2:39641478-39641497 None:intergenic 45.0%
! TGATTGGCTAAACCATGCAG+TGG - chr2_2:39641479-39641498 None:intergenic 45.0%
ACTGCATGGTTTAGCCAATC+AGG + chr2_2:39641478-39641497 Msa0250650:CDS 45.0%
TAAAACTCTGAACAGTGGCC+AGG + chr2_2:39641950-39641969 Msa0250650:CDS 45.0%
CTAAAAAGGAAGAGGAAGGC+AGG - chr2_2:39642012-39642031 None:intergenic 45.0%
!!! TTTTTTGGCTGAAGGGCATC+AGG + chr2_2:39642246-39642265 Msa0250650:intron 45.0%
!!! TTTTTGGCTGAAGGGCATCA+GGG + chr2_2:39642247-39642266 Msa0250650:intron 45.0%
! TGCTGTCAAGTTGTCTACAG+GGG - chr2_2:39642738-39642757 None:intergenic 45.0%
! CTGCTGTCAAGTTGTCTACA+GGG - chr2_2:39642739-39642758 None:intergenic 45.0%
CTGTAGACAACTTGACAGCA+GGG + chr2_2:39642738-39642757 Msa0250650:intron 45.0%
ATCCAAGATACACTTGCCAG+AGG + chr2_2:39642824-39642843 Msa0250650:CDS 45.0%
TCCAAGATACACTTGCCAGA+GGG + chr2_2:39642825-39642844 Msa0250650:CDS 45.0%
CCTAACTTGGTCAGAATAGG+AGG - chr2_2:39643020-39643039 None:intergenic 45.0%
CCTCCTATTCTGACCAAGTT+AGG + chr2_2:39643017-39643036 Msa0250650:CDS 45.0%
AGAACTCACAATGATCAGCG+GGG - chr2_2:39643162-39643181 None:intergenic 45.0%
CAGAACTCACAATGATCAGC+GGG - chr2_2:39643163-39643182 None:intergenic 45.0%
TTGAGGATGGTCAGTCTACA+CGG + chr2_2:39643303-39643322 Msa0250650:intron 45.0%
TGAGCATCAACATTAGGCCA+TGG - chr2_2:39643540-39643559 None:intergenic 45.0%
CCACTGTGAGCATCAACATT+AGG - chr2_2:39643546-39643565 None:intergenic 45.0%
CCTAATGTTGATGCTCACAG+TGG + chr2_2:39643543-39643562 Msa0250650:CDS 45.0%
!! TTTGGTGTCGCAAGGAGTAT+TGG + chr2_2:39643716-39643735 Msa0250650:CDS 45.0%
!! GCCCTGTTATTTCCTTGCAA+AGG + chr2_2:39643761-39643780 Msa0250650:intron 45.0%
! CTCTTGGAATGCCACTTGAA+AGG + chr2_2:39643853-39643872 Msa0250650:CDS 45.0%
!! AAGGCCAAAAAGTGTCACAC+TGG + chr2_2:39643872-39643891 Msa0250650:CDS 45.0%
!!! AGACCCCTCCCTTATTTTTC+TGG + chr2_2:39644039-39644058 Msa0250650:three_prime_UTR 45.0%
CCTTTATTCTGATGCTCCCT+TGG - chr2_2:39644174-39644193 None:intergenic 45.0%
!! CCAAGGGAGCATCAGAATAA+AGG + chr2_2:39644171-39644190 Msa0250650:three_prime_UTR 45.0%
!! AAAATTAATAAGAATAATTA+GGG - chr2_2:39635561-39635580 None:intergenic 5.0%
!! AAAAATTAATAAGAATAATT+AGG - chr2_2:39635562-39635581 None:intergenic 5.0%
!!! TAAATTTTTCTTTTATAATT+CGG + chr2_2:39639218-39639237 Msa0250650:intron 5.0%
!! TAATATTATTATCAAATTAT+GGG - chr2_2:39639356-39639375 None:intergenic 5.0%
!! TTAATATTATTATCAAATTA+TGG - chr2_2:39639357-39639376 None:intergenic 5.0%
!! TTTATAATAAAATTAATCAA+AGG + chr2_2:39639389-39639408 Msa0250650:intron 5.0%
!! TTATAATAAAATTAATCAAA+GGG + chr2_2:39639390-39639409 Msa0250650:intron 5.0%
!!! AATTATTTAATATTTTTTGT+GGG - chr2_2:39640249-39640268 None:intergenic 5.0%
!!! AAATTATTTAATATTTTTTG+TGG - chr2_2:39640250-39640269 None:intergenic 5.0%
!!! AAAATATTAAATAATTGTTT+TGG + chr2_2:39640309-39640328 Msa0250650:intron 5.0%
!!! TAAATTTTATACATTAATTT+TGG - chr2_2:39642339-39642358 None:intergenic 5.0%
!! AAATTAATGTATAAAATTTA+TGG + chr2_2:39642339-39642358 Msa0250650:intron 5.0%
!! TTTACCGGTTGGGTTGGGTT+GGG - chr2_2:39635408-39635427 None:intergenic 50.0%
!! GAGAAGAGCGTTTACCGGTT+GGG - chr2_2:39635418-39635437 None:intergenic 50.0%
!! AGAGAAGAGCGTTTACCGGT+TGG - chr2_2:39635419-39635438 None:intergenic 50.0%
! TGGAAAGCGCAGAAACGCTT+CGG - chr2_2:39635662-39635681 None:intergenic 50.0%
GGTGTCAGTGTCATGATGTC+CGG - chr2_2:39636539-39636558 None:intergenic 50.0%
TCGGGTATCAATGTCGTGTC+CGG - chr2_2:39636638-39636657 None:intergenic 50.0%
ACAGACGTCAGTGTCAGTGT+CGG + chr2_2:39636764-39636783 Msa0250650:intron 50.0%
AGCCAATCCAATCAGGGTCT+TGG + chr2_2:39637511-39637530 Msa0250650:intron 50.0%
CTCCAAGACCCTGATTGGAT+TGG - chr2_2:39637516-39637535 None:intergenic 50.0%
! ACACTTCCAGGTGCTTTTCC+TGG + chr2_2:39638174-39638193 Msa0250650:CDS 50.0%
! TTCCAGGTGCTTTTCCTGGT+GGG + chr2_2:39638178-39638197 Msa0250650:CDS 50.0%
CACAATATGGCCTCAGGCAA+AGG - chr2_2:39638207-39638226 None:intergenic 50.0%
CTTTGCCTGAGGCCATATTG+TGG + chr2_2:39638205-39638224 Msa0250650:CDS 50.0%
AGAAGCCACAATATGGCCTC+AGG - chr2_2:39638213-39638232 None:intergenic 50.0%
! GATTTTTGACCTCTGCGACC+CGG - chr2_2:39639869-39639888 None:intergenic 50.0%
! GCATTTGCAGCTGCTCTGAA+TGG + chr2_2:39641443-39641462 Msa0250650:CDS 50.0%
! GCTGCTCTGAATGGTTTAGC+CGG + chr2_2:39641452-39641471 Msa0250650:CDS 50.0%
CGCCCTCCACCTCTAATTAT+TGG - chr2_2:39642426-39642445 None:intergenic 50.0%
! CCTGCTGTCAAGTTGTCTAC+AGG - chr2_2:39642740-39642759 None:intergenic 50.0%
CCTGTAGACAACTTGACAGC+AGG + chr2_2:39642737-39642756 Msa0250650:intron 50.0%
TTGGATTTGCAGGTTGTGCC+TGG + chr2_2:39642772-39642791 Msa0250650:intron 50.0%
TTGCAGGTTGTGCCTGGATA+TGG + chr2_2:39642778-39642797 Msa0250650:intron 50.0%
GTTGTGCCTGGATATGGACA+TGG + chr2_2:39642784-39642803 Msa0250650:CDS 50.0%
TCCCTCTGGCAAGTGTATCT+TGG - chr2_2:39642829-39642848 None:intergenic 50.0%
GCTTCAATGCAAACTCCCTC+TGG - chr2_2:39642843-39642862 None:intergenic 50.0%
CCTTGCGACACCAAAGAGAA+CGG - chr2_2:39643711-39643730 None:intergenic 50.0%
!! GTCGCAAGGAGTATTGGAGT+TGG + chr2_2:39643722-39643741 Msa0250650:CDS 50.0%
ACAGGGCATGACAAACCTGA+GGG - chr2_2:39643748-39643767 None:intergenic 50.0%
AACAGGGCATGACAAACCTG+AGG - chr2_2:39643749-39643768 None:intergenic 50.0%
TCAACCCAACCCAACCCAAC+CGG + chr2_2:39635401-39635420 Msa0250650:five_prime_UTR 55.0%
!! GTTTACCGGTTGGGTTGGGT+TGG - chr2_2:39635409-39635428 None:intergenic 55.0%
! GAGCGTTTACCGGTTGGGTT+GGG - chr2_2:39635413-39635432 None:intergenic 55.0%
! AGAGCGTTTACCGGTTGGGT+TGG - chr2_2:39635414-39635433 None:intergenic 55.0%
TACGACGCGAGATCGAAGCT+TGG - chr2_2:39635682-39635701 None:intergenic 55.0%
GTCCGGAGTCTGACACATGT+TGG - chr2_2:39636621-39636640 None:intergenic 55.0%
CTCAGCTGTTGACCCAGATG+AGG + chr2_2:39637960-39637979 Msa0250650:CDS 55.0%
! CTTCCAGGTGCTTTTCCTGG+TGG + chr2_2:39638177-39638196 Msa0250650:CDS 55.0%
! TCCAGGTGCTTTTCCTGGTG+GGG + chr2_2:39638179-39638198 Msa0250650:CDS 55.0%
CGAAGTCGTGCGAAAATCCC+AGG + chr2_2:39638498-39638517 Msa0250650:CDS 55.0%
AACTAGGGGTCTCTCATGGC+AGG + chr2_2:39638751-39638770 Msa0250650:intron 55.0%
TACTGGTGTAATGGCCCTCC+AGG + chr2_2:39639142-39639161 Msa0250650:CDS 55.0%
GAGAATTAACCGGGTCGCAG+AGG + chr2_2:39639857-39639876 Msa0250650:intron 55.0%
!! CCGTTCTCTTTGGTGTCGCA+AGG + chr2_2:39643708-39643727 Msa0250650:CDS 55.0%
!! GAGTATTGGAGTTGGCCCTC+AGG + chr2_2:39643730-39643749 Msa0250650:CDS 55.0%
TTGATATGGGACCGGGCTCT+TGG + chr2_2:39643837-39643856 Msa0250650:CDS 55.0%
CAAGTGGCATTCCAAGAGCC+CGG - chr2_2:39643851-39643870 None:intergenic 55.0%
! TCAGCGTCGAGGGTTGTGTC+CGG - chr2_2:39636438-39636457 None:intergenic 60.0%
! AGTGTCGTCGTCAGCGTCGA+GGG - chr2_2:39636448-39636467 None:intergenic 60.0%
TAGTGTCGTCGTCAGCGTCG+AGG - chr2_2:39636449-39636468 None:intergenic 60.0%
!! TCCCCACCAGGAAAAGCACC+TGG - chr2_2:39638183-39638202 None:intergenic 60.0%
GGCTAAACCATGCAGTGGGC+CGG - chr2_2:39641474-39641493 None:intergenic 60.0%
TCAGGCAAAGGCTCCCCACC+AGG - chr2_2:39638195-39638214 None:intergenic 65.0%
TGGTGGGGAGCCTTTGCCTG+AGG + chr2_2:39638194-39638213 Msa0250650:CDS 65.0%
GGTTTAGCCGGCCCACTGCA+TGG + chr2_2:39641464-39641483 Msa0250650:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 39635284 39644307 39635284 ID=Msa0250650;Name=Msa0250650
chr2_2 mRNA 39635284 39644307 39635284 ID=Msa0250650-mRNA-1;Parent=Msa0250650;Name=Msa0250650-mRNA-1;_AED=0.08;_eAED=0.08;_QI=161|1|1|1|0.94|0.9|20|378|472
chr2_2 exon 39635284 39635422 39635284 ID=Msa0250650-mRNA-1:exon:12225;Parent=Msa0250650-mRNA-1
chr2_2 exon 39635626 39635698 39635626 ID=Msa0250650-mRNA-1:exon:12226;Parent=Msa0250650-mRNA-1
chr2_2 exon 39635823 39635885 39635823 ID=Msa0250650-mRNA-1:exon:12227;Parent=Msa0250650-mRNA-1
chr2_2 exon 39637018 39637059 39637018 ID=Msa0250650-mRNA-1:exon:12228;Parent=Msa0250650-mRNA-1
chr2_2 exon 39637723 39637788 39637723 ID=Msa0250650-mRNA-1:exon:12229;Parent=Msa0250650-mRNA-1
chr2_2 exon 39637916 39637981 39637916 ID=Msa0250650-mRNA-1:exon:12230;Parent=Msa0250650-mRNA-1
chr2_2 exon 39638132 39638245 39638132 ID=Msa0250650-mRNA-1:exon:12231;Parent=Msa0250650-mRNA-1
chr2_2 exon 39638456 39638519 39638456 ID=Msa0250650-mRNA-1:exon:12232;Parent=Msa0250650-mRNA-1
chr2_2 exon 39639081 39639163 39639081 ID=Msa0250650-mRNA-1:exon:12233;Parent=Msa0250650-mRNA-1
chr2_2 exon 39640556 39640605 39640556 ID=Msa0250650-mRNA-1:exon:12234;Parent=Msa0250650-mRNA-1
chr2_2 exon 39640676 39640753 39640676 ID=Msa0250650-mRNA-1:exon:12235;Parent=Msa0250650-mRNA-1
chr2_2 exon 39640884 39641012 39640884 ID=Msa0250650-mRNA-1:exon:12236;Parent=Msa0250650-mRNA-1
chr2_2 exon 39641149 39641191 39641149 ID=Msa0250650-mRNA-1:exon:12237;Parent=Msa0250650-mRNA-1
chr2_2 exon 39641413 39641499 39641413 ID=Msa0250650-mRNA-1:exon:12238;Parent=Msa0250650-mRNA-1
chr2_2 exon 39641867 39641971 39641867 ID=Msa0250650-mRNA-1:exon:12239;Parent=Msa0250650-mRNA-1
chr2_2 exon 39642784 39642891 39642784 ID=Msa0250650-mRNA-1:exon:12240;Parent=Msa0250650-mRNA-1
chr2_2 exon 39642993 39643043 39642993 ID=Msa0250650-mRNA-1:exon:12241;Parent=Msa0250650-mRNA-1
chr2_2 exon 39643528 39643601 39643528 ID=Msa0250650-mRNA-1:exon:12242;Parent=Msa0250650-mRNA-1
chr2_2 exon 39643700 39643751 39643700 ID=Msa0250650-mRNA-1:exon:12243;Parent=Msa0250650-mRNA-1
chr2_2 exon 39643837 39644307 39643837 ID=Msa0250650-mRNA-1:exon:12244;Parent=Msa0250650-mRNA-1
chr2_2 five_prime_UTR 39635284 39635422 39635284 ID=Msa0250650-mRNA-1:five_prime_utr;Parent=Msa0250650-mRNA-1
chr2_2 five_prime_UTR 39635626 39635647 39635626 ID=Msa0250650-mRNA-1:five_prime_utr;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39635648 39635698 39635648 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39635823 39635885 39635823 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39637018 39637059 39637018 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39637723 39637788 39637723 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39637916 39637981 39637916 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39638132 39638245 39638132 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39638456 39638519 39638456 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39639081 39639163 39639081 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39640556 39640605 39640556 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39640676 39640753 39640676 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39640884 39641012 39640884 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39641149 39641191 39641149 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39641413 39641499 39641413 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39641867 39641971 39641867 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39642784 39642891 39642784 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39642993 39643043 39642993 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39643528 39643601 39643528 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39643700 39643751 39643700 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 CDS 39643837 39643929 39643837 ID=Msa0250650-mRNA-1:cds;Parent=Msa0250650-mRNA-1
chr2_2 three_prime_UTR 39643930 39644307 39643930 ID=Msa0250650-mRNA-1:three_prime_utr;Parent=Msa0250650-mRNA-1
Gene Sequence

>Msa0250650

ATGGCGTTTTTCCGAAGCGTTTCTGCGCTTTCCAAGCTTCGATCTCGCGTCGGTCAGCAACCTAGTCTCGCTAATTCAGTTAGATGGCTTCAAATGCAGACCTCCACTAACACTGATCTTTTTACTGAGATGAAGGAACTAGTTCCAGAGTATCAGGAACGTGTTAAGAAGCTGAAGAAAGAGCATGGAAGTGTTGAATTGGGAAAAATCACTGCTGATATGGTACTTGGTGGAATGAGAGGAATGACAGCTTTAGTGTGGCTAGGCTCAGCTGTTGACCCAGATGAGGGAATTCGCTTTAGGGGCATGACAATTCCTGACTGTCAGAAAACACTTCCAGGTGCTTTTCCTGGTGGGGAGCCTTTGCCTGAGGCCATATTGTGGCTTCTTTTGACAGGAAAGATACCAAATAAAGAGCAAGTGGATTCATTAGCTCAGGAATTGCGAAGTCGTGCGAAAATCCCAGAGTATGCTTACAAGGCAATCGATGCACTGCCTGTTTCTGCTCATCCAATGACACAATTCACTACTGGTGTAATGGCCCTCCAGGTGGAGAGCGAATTTACAAAGGCATACGAGGGTGGGATACATAAGTCAAGGTATTGGGAGCCAACTTATGAGGATAGCTTGAATTTAATTGCTCGTTTGCCTGGAATTGCTGCTTACATTTATCGACGGATATACAAGGATGGAAAAATCATACCATTGGATGATTCTTTGGATTATGGTGCAAACTATGCTCACATGTTAGGATTTGATGATCCGGAAATGCTTGAGTTTATGAGGCTGTATGTTTCTATCCACAGTGATCATGAAGGCGGCAACGTTAGTTCTCACACAGCTCATCTAGTTGCTAGTTCACTATCAGATCCTTATCTTGCATTTGCAGCTGCTCTGAATGGTTTAGCCGGCCCACTGCATGGTTTAGCCAATCAGGAAGTTCTACGATGGATCAGAAATATAGTTAAGGAGTTTGGAACTCCAAACATAAGTACAGAACAATTGAGCGACTACATTCATAAAACTCTGAACAGTGGCCAGGTTGTGCCTGGATATGGACATGGAGTTTTGCGCAATACTGATCCAAGATACACTTGCCAGAGGGAGTTTGCATTGAAGCATTTACCTAATGATCCACTTTTCCAGCTGGTGTCAAAAATTAAAGAGGTTGTGCCTCCTATTCTGACCAAGTTAGGCAAGGTTAAAAATCCATGGCCTAATGTTGATGCTCACAGTGGAGTACTACTGAACTACTATGGTCTAACTGAGGAAAACTATTATACCGTTCTCTTTGGTGTCGCAAGGAGTATTGGAGTTGGCCCTCAGTTGATATGGGACCGGGCTCTTGGAATGCCACTTGAAAGGCCAAAAAGTGTCACACTGGAGAAACTTGAGAAATTGGTCGGCGCTTCATCCTGA

Protein sequence

>Msa0250650

MAFFRSVSALSKLRSRVGQQPSLANSVRWLQMQTSTNTDLFTEMKELVPEYQERVKKLKKEHGSVELGKITADMVLGGMRGMTALVWLGSAVDPDEGIRFRGMTIPDCQKTLPGAFPGGEPLPEAILWLLLTGKIPNKEQVDSLAQELRSRAKIPEYAYKAIDALPVSAHPMTQFTTGVMALQVESEFTKAYEGGIHKSRYWEPTYEDSLNLIARLPGIAAYIYRRIYKDGKIIPLDDSLDYGANYAHMLGFDDPEMLEFMRLYVSIHSDHEGGNVSSHTAHLVASSLSDPYLAFAAALNGLAGPLHGLANQEVLRWIRNIVKEFGTPNISTEQLSDYIHKTLNSGQVVPGYGHGVLRNTDPRYTCQREFALKHLPNDPLFQLVSKIKEVVPPILTKLGKVKNPWPNVDAHSGVLLNYYGLTEENYYTVLFGVARSIGVGPQLIWDRALGMPLERPKSVTLEKLEKLVGASS*