Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511700 | XP_013461050.1 | 97.614 | 503 | 12 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1006 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511700 | sp|Q8VWZ1|AADH1_PEA | 92.247 | 503 | 39 | 0 | 1 | 503 | 1 | 503 | 0.0 | 933 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511700 | A0A072UZ53 | 97.614 | 503 | 12 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1006 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013970 | Msa0511700 | 0.805264 | 1.451489e-49 | -8.615850e-47 |
| Msa0371400 | Msa0511700 | 0.870042 | 1.967587e-66 | -8.615850e-47 |
| Msa0419570 | Msa0511700 | 0.802061 | 6.708298e-49 | -8.615850e-47 |
| Msa0419600 | Msa0511700 | 0.867744 | 1.091573e-65 | -8.615850e-47 |
| Msa0465700 | Msa0511700 | 0.974672 | 1.431669e-138 | -8.615850e-47 |
| Msa0250650 | Msa0511700 | 0.803430 | 3.498884e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511700 | MtrunA17_Chr3g0118121 | 97.614 | 503 | 12 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1006 |
| Msa0511700 | MtrunA17_Chr3g0118081 | 92.445 | 503 | 38 | 0 | 1 | 503 | 31 | 533 | 0.0 | 937 |
| Msa0511700 | MtrunA17_Chr4g0059521 | 83.698 | 503 | 82 | 0 | 1 | 503 | 1 | 503 | 0.0 | 847 |
| Msa0511700 | MtrunA17_Chr8g0390631 | 41.176 | 493 | 279 | 5 | 4 | 494 | 10 | 493 | 1.44e-124 | 373 |
| Msa0511700 | MtrunA17_Chr6g0485301 | 41.785 | 493 | 276 | 5 | 4 | 494 | 18 | 501 | 8.16e-122 | 366 |
| Msa0511700 | MtrunA17_Chr6g0485311 | 40.771 | 493 | 281 | 5 | 4 | 494 | 16 | 499 | 7.75e-121 | 363 |
| Msa0511700 | MtrunA17_Chr8g0365221 | 38.945 | 493 | 288 | 6 | 5 | 494 | 58 | 540 | 5.93e-118 | 357 |
| Msa0511700 | MtrunA17_Chr8g0390651 | 39.271 | 494 | 287 | 6 | 4 | 494 | 19 | 502 | 3.08e-116 | 352 |
| Msa0511700 | MtrunA17_Chr2g0310091 | 39.832 | 477 | 277 | 3 | 9 | 485 | 63 | 529 | 7.61e-115 | 349 |
| Msa0511700 | MtrunA17_Chr4g0059221 | 39.468 | 489 | 283 | 6 | 9 | 494 | 65 | 543 | 2.81e-113 | 345 |
| Msa0511700 | MtrunA17_Chr3g0117861 | 38.604 | 487 | 286 | 6 | 11 | 494 | 65 | 541 | 5.82e-112 | 342 |
| Msa0511700 | MtrunA17_Chr4g0074171 | 34.110 | 472 | 282 | 11 | 9 | 470 | 17 | 469 | 3.92e-66 | 221 |
| Msa0511700 | MtrunA17_Chr1g0149961 | 33.404 | 470 | 284 | 11 | 11 | 470 | 19 | 469 | 1.56e-64 | 217 |
| Msa0511700 | MtrunA17_Chr2g0294411 | 28.747 | 487 | 325 | 8 | 23 | 499 | 64 | 538 | 2.70e-60 | 208 |
| Msa0511700 | MtrunA17_Chr2g0300801 | 29.400 | 483 | 308 | 12 | 11 | 480 | 25 | 487 | 9.30e-56 | 194 |
| Msa0511700 | MtrunA17_Chr2g0279751 | 29.979 | 477 | 301 | 10 | 25 | 487 | 32 | 489 | 1.03e-51 | 183 |
| Msa0511700 | MtrunA17_Chr4g0049641 | 28.184 | 479 | 323 | 9 | 25 | 495 | 59 | 524 | 1.07e-50 | 181 |
| Msa0511700 | MtrunA17_Chr3g0124811 | 31.856 | 361 | 231 | 7 | 130 | 485 | 97 | 447 | 4.54e-43 | 159 |
| Msa0511700 | MtrunA17_Chr8g0372381 | 30.734 | 436 | 278 | 13 | 60 | 485 | 17 | 438 | 9.89e-42 | 155 |
| Msa0511700 | MtrunA17_Chr8g0384741 | 29.742 | 427 | 278 | 10 | 68 | 485 | 85 | 498 | 9.31e-40 | 151 |
| Msa0511700 | MtrunA17_Chr1g0159811 | 30.473 | 338 | 220 | 7 | 130 | 462 | 95 | 422 | 2.56e-37 | 143 |
| Msa0511700 | MtrunA17_Chr2g0328781 | 27.083 | 480 | 300 | 16 | 46 | 500 | 12 | 466 | 1.97e-35 | 138 |
| Msa0511700 | MtrunA17_Chr4g0032441 | 28.000 | 450 | 304 | 10 | 60 | 500 | 13 | 451 | 1.01e-28 | 119 |
| Msa0511700 | MtrunA17_Chr4g0060261 | 26.230 | 305 | 191 | 11 | 144 | 429 | 187 | 476 | 2.77e-14 | 75.5 |
| Msa0511700 | MtrunA17_Chr3g0129271 | 30.108 | 186 | 121 | 5 | 233 | 414 | 43 | 223 | 2.85e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511700 | AT1G74920.1 | 77.246 | 501 | 114 | 0 | 1 | 501 | 1 | 501 | 0.0 | 843 |
| Msa0511700 | AT1G74920.2 | 76.248 | 501 | 114 | 1 | 1 | 501 | 1 | 496 | 0.0 | 827 |
| Msa0511700 | AT3G48170.1 | 75.547 | 503 | 123 | 0 | 1 | 503 | 1 | 503 | 0.0 | 821 |
| Msa0511700 | AT3G24503.1 | 43.238 | 488 | 267 | 5 | 9 | 494 | 21 | 500 | 1.45e-135 | 401 |
| Msa0511700 | AT3G48000.1 | 40.726 | 496 | 281 | 6 | 2 | 494 | 52 | 537 | 5.11e-122 | 368 |
| Msa0511700 | AT1G23800.1 | 38.742 | 493 | 289 | 6 | 5 | 494 | 51 | 533 | 5.29e-113 | 345 |
| Msa0511700 | AT1G79440.1 | 38.574 | 477 | 283 | 3 | 9 | 485 | 54 | 520 | 2.48e-105 | 325 |
| Msa0511700 | AT1G23800.2 | 38.690 | 336 | 195 | 5 | 5 | 337 | 51 | 378 | 3.87e-68 | 224 |
| Msa0511700 | AT3G66658.1 | 31.070 | 486 | 307 | 12 | 22 | 494 | 63 | 533 | 7.44e-65 | 220 |
| Msa0511700 | AT3G66658.2 | 31.070 | 486 | 307 | 12 | 22 | 494 | 63 | 533 | 2.17e-64 | 219 |
| Msa0511700 | AT2G24270.3 | 32.484 | 471 | 291 | 10 | 9 | 470 | 17 | 469 | 1.38e-63 | 215 |
| Msa0511700 | AT2G24270.1 | 32.484 | 471 | 291 | 10 | 9 | 470 | 17 | 469 | 1.38e-63 | 215 |
| Msa0511700 | AT2G24270.4 | 32.484 | 471 | 291 | 10 | 9 | 470 | 17 | 469 | 2.13e-63 | 214 |
| Msa0511700 | AT2G24270.2 | 32.484 | 471 | 291 | 10 | 9 | 470 | 57 | 509 | 3.53e-63 | 215 |
| Msa0511700 | AT1G54100.2 | 28.862 | 492 | 323 | 11 | 11 | 492 | 24 | 498 | 1.07e-55 | 194 |
| Msa0511700 | AT1G54100.1 | 28.862 | 492 | 323 | 11 | 11 | 492 | 24 | 498 | 1.07e-55 | 194 |
| Msa0511700 | AT2G14170.2 | 29.289 | 478 | 312 | 10 | 25 | 494 | 22 | 481 | 4.25e-53 | 187 |
| Msa0511700 | AT2G14170.1 | 29.289 | 478 | 312 | 10 | 25 | 494 | 131 | 590 | 1.71e-52 | 187 |
| Msa0511700 | AT2G14170.3 | 29.167 | 456 | 305 | 8 | 25 | 475 | 131 | 573 | 1.78e-50 | 182 |
| Msa0511700 | AT1G44170.3 | 30.748 | 361 | 235 | 7 | 130 | 485 | 28 | 378 | 4.84e-44 | 160 |
| Msa0511700 | AT1G44170.1 | 30.748 | 361 | 235 | 7 | 130 | 485 | 91 | 441 | 1.30e-43 | 161 |
| Msa0511700 | AT1G44170.2 | 30.748 | 361 | 235 | 7 | 130 | 485 | 91 | 441 | 1.30e-43 | 161 |
| Msa0511700 | AT4G36250.1 | 26.638 | 458 | 302 | 12 | 42 | 485 | 3 | 440 | 5.34e-34 | 134 |
| Msa0511700 | AT4G34240.4 | 29.002 | 431 | 287 | 10 | 61 | 485 | 72 | 489 | 2.75e-31 | 127 |
| Msa0511700 | AT4G34240.1 | 29.002 | 431 | 287 | 10 | 61 | 485 | 87 | 504 | 3.29e-31 | 127 |
| Msa0511700 | AT4G34240.3 | 30.532 | 357 | 231 | 9 | 136 | 485 | 16 | 362 | 1.48e-30 | 123 |
| Msa0511700 | AT4G34240.2 | 30.547 | 311 | 202 | 8 | 61 | 367 | 87 | 387 | 3.13e-19 | 90.1 |
Find 125 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCTCTACCTTTGTTTC+TGG | 0.123105 | 3_4:-61324632 | None:intergenic |
| GGCATTAAACGTAGCGGTTT+TGG | 0.201802 | 3_4:+61327899 | Msa0511700:CDS |
| TTTAATATTGTTACCGGATT+AGG | 0.224280 | 3_4:+61325728 | Msa0511700:CDS |
| AGAGATTGGTCCACTGCTTC+TGG | 0.281087 | 3_4:+61324646 | Msa0511700:CDS |
| TCAGTGGAGGGATTGATTAT+TGG | 0.289338 | 3_4:-61324426 | None:intergenic |
| CTGAAGTCTGGCATCGAATA+AGG | 0.289540 | 3_4:+61328184 | Msa0511700:three_prime_UTR |
| ATCATATAGGATGATGTTAT+TGG | 0.292168 | 3_4:+61325222 | Msa0511700:intron |
| TAGGAACTATCCTCTCTTAA+TGG | 0.308920 | 3_4:+61325495 | Msa0511700:intron |
| GGCTGAAAATATCAAAATTT+CGG | 0.313683 | 3_4:+61326642 | Msa0511700:CDS |
| TCTACCTTTGTTTCTGGAAA+TGG | 0.315025 | 3_4:-61324626 | None:intergenic |
| TGACTACCTCGATGCAAATT+TGG | 0.321570 | 3_4:+61327475 | Msa0511700:CDS |
| GTATTTCACAGCTATGGCTT+GGG | 0.324222 | 3_4:+61327661 | Msa0511700:intron |
| GTTGCTGAATGGACCATCTT+TGG | 0.343607 | 3_4:+61326301 | Msa0511700:intron |
| GCACAACCAGCAGCTAGAGC+TGG | 0.348346 | 3_4:-61325535 | None:intergenic |
| GCGTGACAGAGAGGAGAAAA+TGG | 0.351488 | 3_4:+61324332 | Msa0511700:exon |
| TAAATTTGATTTCTGAAGTC+TGG | 0.364661 | 3_4:+61328172 | Msa0511700:three_prime_UTR |
| TTGTGAATAAACTTGTGAAA+TGG | 0.372426 | 3_4:+61326620 | Msa0511700:CDS |
| ACCTGTGCTTCACTGACAAT+AGG | 0.380793 | 3_4:-61326694 | None:intergenic |
| AAGATGTGAGCGCGTATCTA+AGG | 0.388834 | 3_4:+61327711 | Msa0511700:CDS |
| TTTGCCGGTAGCTCTGCAAC+TGG | 0.391028 | 3_4:+61325954 | Msa0511700:CDS |
| AATATTGAAGCCGTCTGAAT+TGG | 0.395523 | 3_4:+61325561 | Msa0511700:CDS |
| CCACCAAGCTCTAGTGAAAC+AGG | 0.398736 | 3_4:-61326097 | None:intergenic |
| TTAAACTTACATGCACAATA+AGG | 0.400421 | 3_4:-61326366 | None:intergenic |
| GGATATACCAGCTGCTACTA+AGG | 0.400740 | 3_4:+61324567 | Msa0511700:CDS |
| GGTATTTCACAGCTATGGCT+TGG | 0.402032 | 3_4:+61327660 | Msa0511700:intron |
| TTTAGGACCTGTTTGGAGTT+GGG | 0.403452 | 3_4:+61325668 | Msa0511700:intron |
| ATCCATTGGAAGAAGGTTGC+AGG | 0.404314 | 3_4:+61326665 | Msa0511700:CDS |
| TGAGGATGTTGACCTTGATA+AGG | 0.409876 | 3_4:+61326141 | Msa0511700:CDS |
| ATTAATGCAACAACACCAAT+AGG | 0.410007 | 3_4:-61325348 | None:intergenic |
| AGTAGACAATTATTCATAGA+TGG | 0.413804 | 3_4:+61324369 | Msa0511700:CDS |
| ATCCCATCCCGATGTTGATA+AGG | 0.425124 | 3_4:+61325775 | Msa0511700:CDS |
| ATTCGATAGATTTCCTTTGC+CGG | 0.430436 | 3_4:+61325939 | Msa0511700:intron |
| CCAGAAACAAAGGTAGAGAT+TGG | 0.430993 | 3_4:+61324632 | Msa0511700:CDS |
| CAGCCTGTTTCACTAGAGCT+TGG | 0.432951 | 3_4:+61326094 | Msa0511700:intron |
| GGATGAAGCACTAGCGGATC+TGG | 0.434432 | 3_4:+61325116 | Msa0511700:CDS |
| TTCAATGCAGCATTTAAAGA+AGG | 0.434642 | 3_4:+61327419 | Msa0511700:intron |
| TATCAAAATTTCGGATCCAT+TGG | 0.441214 | 3_4:+61326651 | Msa0511700:CDS |
| TGTGAATAAACTTGTGAAAT+GGG | 0.447654 | 3_4:+61326621 | Msa0511700:CDS |
| CTCTTCAAGCTGGAATTGTA+TGG | 0.448311 | 3_4:+61327834 | Msa0511700:CDS |
| GTTATTAAACAGTTGCTGAA+TGG | 0.450207 | 3_4:+61326290 | Msa0511700:intron |
| GGCTCCTGTATCCCTTCCTA+TGG | 0.450658 | 3_4:+61325296 | Msa0511700:CDS |
| TGCTGGGCTTGCTGAAGGGT+TGG | 0.452991 | 3_4:+61325260 | Msa0511700:CDS |
| TTATTGTTATCTTAAGTTGT+TGG | 0.457855 | 3_4:+61328228 | Msa0511700:three_prime_UTR |
| GTTAACTATCACAGCTTTGA+AGG | 0.463549 | 3_4:-61328134 | None:intergenic |
| AAATTTATCATCACTTTACA+TGG | 0.464511 | 3_4:-61328156 | None:intergenic |
| TTGGAAGAAGGTTGCAGGCT+AGG | 0.469097 | 3_4:+61326670 | Msa0511700:CDS |
| GAGGATGTTGACCTTGATAA+GGG | 0.470972 | 3_4:+61326142 | Msa0511700:CDS |
| AAGTTTATTCACAAATTCTA+CGG | 0.471124 | 3_4:-61326611 | None:intergenic |
| ACCAGCTTCATGGCCTAATC+CGG | 0.472397 | 3_4:-61325741 | None:intergenic |
| ATTTCGGATCCATTGGAAGA+AGG | 0.477666 | 3_4:+61326658 | Msa0511700:CDS |
| TACTATGCTGGGCTTGCTGA+AGG | 0.480607 | 3_4:+61325255 | Msa0511700:CDS |
| CCCTATTGTCAGTGAAGCAC+AGG | 0.482906 | 3_4:+61326693 | Msa0511700:CDS |
| ATTCTGCAGGCTCTTCAAGC+TGG | 0.483750 | 3_4:+61327824 | Msa0511700:intron |
| CCTGTGCTTCACTGACAATA+GGG | 0.485460 | 3_4:-61326693 | None:intergenic |
| GTTCAAACCTTATCAACATC+GGG | 0.486154 | 3_4:-61325782 | None:intergenic |
| CCCTCCACTGAAAATATCAT+AGG | 0.488751 | 3_4:+61324438 | Msa0511700:CDS |
| GTATCCATAGGAAGGGATAC+AGG | 0.493292 | 3_4:-61325300 | None:intergenic |
| TATTTCGCCCAACTCCAAAC+AGG | 0.497837 | 3_4:-61325675 | None:intergenic |
| CATGTTCTGAAGGAGCCTAT+TGG | 0.499786 | 3_4:+61325333 | Msa0511700:CDS |
| CGTAAAGAAGCAGCCAAAGA+TGG | 0.503081 | 3_4:-61326314 | None:intergenic |
| GTCACATCGGTTACGATGGT+TGG | 0.503397 | 3_4:-61327456 | None:intergenic |
| CAAGCTTCATTCAAGCTCCA+TGG | 0.506934 | 3_4:+61327873 | Msa0511700:CDS |
| GCTTCTGGTTCTGTTCGTGC+TGG | 0.509086 | 3_4:+61324661 | Msa0511700:CDS |
| AAAGAAGTTGGCCTTCCTCC+TGG | 0.512329 | 3_4:+61325701 | Msa0511700:CDS |
| AAGCTCCTATACTCAACAAA+AGG | 0.512483 | 3_4:+61324400 | Msa0511700:CDS |
| CCTGTTTCACTAGAGCTTGG+TGG | 0.513971 | 3_4:+61326097 | Msa0511700:CDS |
| TTTGGCTGCTTCTTTACGAA+TGG | 0.514086 | 3_4:+61326319 | Msa0511700:CDS |
| AAGCTTCATTCAAGCTCCAT+GGG | 0.519280 | 3_4:+61327874 | Msa0511700:CDS |
| AACCTTATCAACATCGGGAT+GGG | 0.520697 | 3_4:-61325777 | None:intergenic |
| ACATCTTCCTTAGTAGCAGC+TGG | 0.522852 | 3_4:-61324574 | None:intergenic |
| ATACATATCTGATGAGCAGT+GGG | 0.523721 | 3_4:+61328097 | Msa0511700:CDS |
| ATCGCTCCAGCTCTAGCTGC+TGG | 0.524125 | 3_4:+61325529 | Msa0511700:CDS |
| AGGGTTGGATGCAAAGCAAA+AGG | 0.525153 | 3_4:+61325275 | Msa0511700:CDS |
| TTGGTCGCGAATTAGGAGAA+TGG | 0.527821 | 3_4:+61327918 | Msa0511700:CDS |
| TCTTCGAGCAATTGCTGCAA+AGG | 0.528718 | 3_4:+61324687 | Msa0511700:CDS |
| ATCCTCTCTTAATGGCGACT+TGG | 0.533379 | 3_4:+61325503 | Msa0511700:CDS |
| TATTTCACAGCTATGGCTTG+GGG | 0.535756 | 3_4:+61327662 | Msa0511700:intron |
| AATAGATTGTGGAAAGCCAC+TGG | 0.537548 | 3_4:+61325095 | Msa0511700:CDS |
| TATCTGATGAGCAGTGGGGC+TGG | 0.538103 | 3_4:+61328102 | Msa0511700:CDS |
| AACTTAAGATAACAATAACT+TGG | 0.542633 | 3_4:-61328223 | None:intergenic |
| TTGTTGCATTAATTACTCCA+TGG | 0.543900 | 3_4:+61325358 | Msa0511700:CDS |
| GGCGAAATATGCAAAGAAGT+TGG | 0.547648 | 3_4:+61325689 | Msa0511700:CDS |
| AGTTGCAGAGCTACCGGCAA+AGG | 0.549529 | 3_4:-61325952 | None:intergenic |
| TCAATGCAGCATTTAAAGAA+GGG | 0.549849 | 3_4:+61327420 | Msa0511700:intron |
| CTTCAAAAGCCATGTTCTGA+AGG | 0.554689 | 3_4:+61325323 | Msa0511700:CDS |
| AGGCACACCAACCCTTATCA+AGG | 0.555964 | 3_4:-61326153 | None:intergenic |
| AGCCTGCAACCTTCTTCCAA+TGG | 0.556310 | 3_4:-61326667 | None:intergenic |
| TTAACTATCACAGCTTTGAA+GGG | 0.557676 | 3_4:-61328133 | None:intergenic |
| GCTCCCAGTTGCAGAGCTAC+CGG | 0.560969 | 3_4:-61325958 | None:intergenic |
| TAGATCGATTGCTTCTTCCT+CGG | 0.561075 | 3_4:-61327544 | None:intergenic |
| ATCTCAACGGCTAAGAGTGA+AGG | 0.561409 | 3_4:+61327285 | Msa0511700:CDS |
| AGCTGCGGCACAGCTAATCA+AGG | 0.562042 | 3_4:+61325992 | Msa0511700:CDS |
| TTGCCGGTAGCTCTGCAACT+GGG | 0.565287 | 3_4:+61325955 | Msa0511700:CDS |
| ACCGGATTAGGCCATGAAGC+TGG | 0.566934 | 3_4:+61325740 | Msa0511700:CDS |
| CATGGAGCTTGAATGAAGCT+TGG | 0.568220 | 3_4:-61327872 | None:intergenic |
| ATAATATTATCATTATAGCA+TGG | 0.568490 | 3_4:+61324246 | Msa0511700:five_prime_UTR |
| CAATAGGCTCCTTCAGAACA+TGG | 0.568769 | 3_4:-61325332 | None:intergenic |
| TCCGCTAGTGCTTCATCCAG+TGG | 0.569359 | 3_4:-61325111 | None:intergenic |
| ACTATGCTGGGCTTGCTGAA+GGG | 0.576322 | 3_4:+61325256 | Msa0511700:CDS |
| AGTTCAAACCTTATCAACAT+CGG | 0.576734 | 3_4:-61325783 | None:intergenic |
| GACTGGTGGGCGTCGCCCAG+AGG | 0.577345 | 3_4:+61327320 | Msa0511700:CDS |
| AAGCTTGAATCAATAGATTG+TGG | 0.586574 | 3_4:+61325084 | Msa0511700:CDS |
| AAACCTTATCAACATCGGGA+TGG | 0.586805 | 3_4:-61325778 | None:intergenic |
| TTCCAAGTCGCCATTAAGAG+AGG | 0.587691 | 3_4:-61325505 | None:intergenic |
| TAACTATCACAGCTTTGAAG+GGG | 0.590762 | 3_4:-61328132 | None:intergenic |
| TTTGAAGGTATCCATAGGAA+GGG | 0.604376 | 3_4:-61325307 | None:intergenic |
| TTCATTCAAGCTCCATGGGG+AGG | 0.608597 | 3_4:+61327878 | Msa0511700:CDS |
| CTACGTTTAATGCCTCCCCA+TGG | 0.609880 | 3_4:-61327890 | None:intergenic |
| AATTATTCATAGATGGAGAG+TGG | 0.612529 | 3_4:+61324376 | Msa0511700:CDS |
| TACACAGATGCCAATTCAGA+CGG | 0.614415 | 3_4:-61325571 | None:intergenic |
| AGAGCCATTTCCAGAAACAA+AGG | 0.615015 | 3_4:+61324622 | Msa0511700:CDS |
| GCCACTGGATGAAGCACTAG+CGG | 0.621235 | 3_4:+61325110 | Msa0511700:CDS |
| GCTAAGAGTGCGTGACAGAG+AGG | 0.621700 | 3_4:+61324323 | Msa0511700:five_prime_UTR |
| GATACATATCTGATGAGCAG+TGG | 0.625206 | 3_4:+61328096 | Msa0511700:CDS |
| GGTAGTCACATCGGTTACGA+TGG | 0.633466 | 3_4:-61327460 | None:intergenic |
| TTGCATCGAGGTAGTCACAT+CGG | 0.634094 | 3_4:-61327469 | None:intergenic |
| TTCTCTCCAAATTTGCATCG+AGG | 0.647218 | 3_4:-61327481 | None:intergenic |
| ACGAACAGAACCAGAAGCAG+TGG | 0.650272 | 3_4:-61324656 | None:intergenic |
| GAGCAAGATTATGACAGCTG+CGG | 0.668052 | 3_4:+61325977 | Msa0511700:CDS |
| TGGGGAGGCATTAAACGTAG+CGG | 0.693952 | 3_4:+61327893 | Msa0511700:CDS |
| AAGAAAGAAACGTATACACA+AGG | 0.695848 | 3_4:+61324295 | Msa0511700:five_prime_UTR |
| TAACATCAATGAAAGCAACA+TGG | 0.708034 | 3_4:-61328309 | None:intergenic |
| AGCTTCATTCAAGCTCCATG+GGG | 0.709625 | 3_4:+61327875 | Msa0511700:CDS |
| GCATCGAATAAGGTGCGATG+TGG | 0.714161 | 3_4:+61328194 | Msa0511700:three_prime_UTR |
| TACATATCTGATGAGCAGTG+GGG | 0.771154 | 3_4:+61328098 | Msa0511700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTGATTTTATTATATATT+AGG | + | chr3_4:61325476-61325495 | Msa0511700:intron | 10.0% |
| !! | ACAAATTAATAAACTATAAA+CGG | - | chr3_4:61326265-61326284 | None:intergenic | 10.0% |
| !!! | AATTTTCTTATTGTATAAAT+CGG | + | chr3_4:61326458-61326477 | Msa0511700:intron | 10.0% |
| !! | ATAATATTATCATTATAGCA+TGG | + | chr3_4:61324246-61324265 | Msa0511700:five_prime_UTR | 15.0% |
| !!! | ACAATTCAATATCTAAAATT+TGG | + | chr3_4:61327227-61327246 | Msa0511700:intron | 15.0% |
| !!! | CAATTCAATATCTAAAATTT+GGG | + | chr3_4:61327228-61327247 | Msa0511700:intron | 15.0% |
| !!! | TTGATTTTTTTTCTAACTAA+TGG | + | chr3_4:61327781-61327800 | Msa0511700:intron | 15.0% |
| !!! | TTCTTTCTTTTTTCAAAGAT+TGG | - | chr3_4:61324284-61324303 | None:intergenic | 20.0% |
| !! | AAAAAAAACCTGAAACATTA+AGG | - | chr3_4:61324470-61324489 | None:intergenic | 20.0% |
| !!! | TTCAATTTCATGGATTATTT+TGG | - | chr3_4:61324893-61324912 | None:intergenic | 20.0% |
| !! | AAACAAAAAAGAAAGAAGTA+CGG | - | chr3_4:61325172-61325191 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTTGCTTACT+TGG | + | chr3_4:61325183-61325202 | Msa0511700:intron | 20.0% |
| !!! | CAAATGATTTTGTTCATTAA+TGG | + | chr3_4:61325815-61325834 | Msa0511700:intron | 20.0% |
| !! | ACATGTATTATTGATGAAAT+GGG | - | chr3_4:61326409-61326428 | None:intergenic | 20.0% |
| !! | AACATGTATTATTGATGAAA+TGG | - | chr3_4:61326410-61326429 | None:intergenic | 20.0% |
| !! | AAGTTTATTCACAAATTCTA+CGG | - | chr3_4:61326614-61326633 | None:intergenic | 20.0% |
| !! | AAAAATCTTATGAGAGTAAA+TGG | - | chr3_4:61326865-61326884 | None:intergenic | 20.0% |
| !!! | ATTTACTCTCATAAGATTTT+TGG | + | chr3_4:61326864-61326883 | Msa0511700:intron | 20.0% |
| !!! | ACTACTATATGTTTTCATTT+TGG | - | chr3_4:61327063-61327082 | None:intergenic | 20.0% |
| !!! | CTTAATGTTTTTAAATTGCA+CGG | - | chr3_4:61327174-61327193 | None:intergenic | 20.0% |
| !!! | TTTTAGATATTGAATTGTCT+TGG | - | chr3_4:61327225-61327244 | None:intergenic | 20.0% |
| !!! | AGTATTGAATTTTATCTCAA+CGG | + | chr3_4:61327272-61327291 | Msa0511700:CDS | 20.0% |
| !! | TCACATTTGAAAATATTAGA+GGG | - | chr3_4:61327990-61328009 | None:intergenic | 20.0% |
| !! | TTCACATTTGAAAATATTAG+AGG | - | chr3_4:61327991-61328010 | None:intergenic | 20.0% |
| !! | AAATTTATCATCACTTTACA+TGG | - | chr3_4:61328159-61328178 | None:intergenic | 20.0% |
| !! | AACTTAAGATAACAATAACT+TGG | - | chr3_4:61328226-61328245 | None:intergenic | 20.0% |
| !!! | TTATTGTTATCTTAAGTTGT+TGG | + | chr3_4:61328228-61328247 | Msa0511700:three_prime_UTR | 20.0% |
| ! | AGTAGACAATTATTCATAGA+TGG | + | chr3_4:61324369-61324388 | Msa0511700:CDS | 25.0% |
| !!! | TTCTATTTTTGCTCTTGATA+TGG | + | chr3_4:61324722-61324741 | Msa0511700:intron | 25.0% |
| !! | ATCTACGATTTTCAATTTCA+TGG | - | chr3_4:61324903-61324922 | None:intergenic | 25.0% |
| ! | ATTTCAGTAACTAAAACTGT+TGG | + | chr3_4:61324944-61324963 | Msa0511700:intron | 25.0% |
| ! | TTTCAGTAACTAAAACTGTT+GGG | + | chr3_4:61324945-61324964 | Msa0511700:intron | 25.0% |
| ! | ATCATATAGGATGATGTTAT+TGG | + | chr3_4:61325222-61325241 | Msa0511700:intron | 25.0% |
| !! | GTCTTATCGTTTACAATTTT+AGG | + | chr3_4:61325651-61325670 | Msa0511700:intron | 25.0% |
| ! | GTAACAATATTAAAAACACC+AGG | - | chr3_4:61325722-61325741 | None:intergenic | 25.0% |
| !!! | GGTGTTTTTAATATTGTTAC+CGG | + | chr3_4:61325722-61325741 | Msa0511700:CDS | 25.0% |
| ! | TTTAATATTGTTACCGGATT+AGG | + | chr3_4:61325728-61325747 | Msa0511700:CDS | 25.0% |
| ! | CAAATTAGACATATTTGAGA+AGG | - | chr3_4:61326176-61326195 | None:intergenic | 25.0% |
| ! | TCTCAAATATGTCTAATTTG+TGG | + | chr3_4:61326176-61326195 | Msa0511700:intron | 25.0% |
| !! | ATTTTATGATGTGTAACCTA+TGG | + | chr3_4:61326205-61326224 | Msa0511700:intron | 25.0% |
| ! | ATTCAGCAACTGTTTAATAA+CGG | - | chr3_4:61326291-61326310 | None:intergenic | 25.0% |
| ! | TTAAACTTACATGCACAATA+AGG | - | chr3_4:61326369-61326388 | None:intergenic | 25.0% |
| ! | CATGTATTATTGATGAAATG+GGG | - | chr3_4:61326408-61326427 | None:intergenic | 25.0% |
| ! | TTTCTTATTGTATAAATCGG+AGG | + | chr3_4:61326461-61326480 | Msa0511700:intron | 25.0% |
| ! | TTCTTATTGTATAAATCGGA+GGG | + | chr3_4:61326462-61326481 | Msa0511700:intron | 25.0% |
| ! | TAAAACACTTATACTGTTTC+AGG | + | chr3_4:61326579-61326598 | Msa0511700:intron | 25.0% |
| ! | TTGTGAATAAACTTGTGAAA+TGG | + | chr3_4:61326620-61326639 | Msa0511700:CDS | 25.0% |
| ! | TGTGAATAAACTTGTGAAAT+GGG | + | chr3_4:61326621-61326640 | Msa0511700:CDS | 25.0% |
| ! | GGCTGAAAATATCAAAATTT+CGG | + | chr3_4:61326642-61326661 | Msa0511700:CDS | 25.0% |
| ! | TAAAGTCATGCATTAGTTAT+TGG | + | chr3_4:61326779-61326798 | Msa0511700:intron | 25.0% |
| ! | TTATCGTATCTATATGCAAA+AGG | + | chr3_4:61326909-61326928 | Msa0511700:intron | 25.0% |
| !! | AAAAGGAGGTTTTTAATCAA+TGG | + | chr3_4:61326926-61326945 | Msa0511700:intron | 25.0% |
| !!! | TTTAATCAATGGCTTTAGTT+TGG | + | chr3_4:61326937-61326956 | Msa0511700:intron | 25.0% |
| !! | TCTTTTATGATAGTATATCC+TGG | - | chr3_4:61327747-61327766 | None:intergenic | 25.0% |
| !! | ACTTATATTGATTATTCTGC+AGG | + | chr3_4:61327811-61327830 | Msa0511700:intron | 25.0% |
| !!! | GAGATTTTAAGAAACAAGAT+TGG | - | chr3_4:61327949-61327968 | None:intergenic | 25.0% |
| ! | AATATTAGAGGGAGAATTAA+AGG | - | chr3_4:61327979-61327998 | None:intergenic | 25.0% |
| !!! | TAAATTTGATTTCTGAAGTC+TGG | + | chr3_4:61328172-61328191 | Msa0511700:three_prime_UTR | 25.0% |
| AAGAAAGAAACGTATACACA+AGG | + | chr3_4:61324295-61324314 | Msa0511700:five_prime_UTR | 30.0% | |
| AATTATTCATAGATGGAGAG+TGG | + | chr3_4:61324376-61324395 | Msa0511700:CDS | 30.0% | |
| ! | TTGCTCTTGATATGGATTAA+AGG | + | chr3_4:61324730-61324749 | Msa0511700:intron | 30.0% |
| ! | TGCTCTTGATATGGATTAAA+GGG | + | chr3_4:61324731-61324750 | Msa0511700:intron | 30.0% |
| ACTGAGAAAAAGAATGAACT+AGG | + | chr3_4:61325060-61325079 | Msa0511700:CDS | 30.0% | |
| AAGCTTGAATCAATAGATTG+TGG | + | chr3_4:61325084-61325103 | Msa0511700:CDS | 30.0% | |
| TCTGGTAATTATTATTCGAC+TGG | + | chr3_4:61325134-61325153 | Msa0511700:intron | 30.0% | |
| ATTAATGCAACAACACCAAT+AGG | - | chr3_4:61325351-61325370 | None:intergenic | 30.0% | |
| TTGTTGCATTAATTACTCCA+TGG | + | chr3_4:61325358-61325377 | Msa0511700:CDS | 30.0% | |
| !!! | TTACAATTTTAGGACCTGTT+TGG | + | chr3_4:61325661-61325680 | Msa0511700:intron | 30.0% |
| ACAATATTAAAAACACCAGG+AGG | - | chr3_4:61325719-61325738 | None:intergenic | 30.0% | |
| AGTTCAAACCTTATCAACAT+CGG | - | chr3_4:61325786-61325805 | None:intergenic | 30.0% | |
| AACTATAAGAAGCTAGATCT+TGG | + | chr3_4:61325843-61325862 | Msa0511700:intron | 30.0% | |
| ACATCCTCAAAAACAACTAT+CGG | - | chr3_4:61326130-61326149 | None:intergenic | 30.0% | |
| GTTATTAAACAGTTGCTGAA+TGG | + | chr3_4:61326290-61326309 | Msa0511700:intron | 30.0% | |
| ! | CCAATAATAGACTTGGTAAA+AGG | - | chr3_4:61326531-61326550 | None:intergenic | 30.0% |
| ! | CCTTTTACCAAGTCTATTAT+TGG | + | chr3_4:61326528-61326547 | Msa0511700:intron | 30.0% |
| ATCAAAGCCAATAATAGACT+TGG | - | chr3_4:61326538-61326557 | None:intergenic | 30.0% | |
| TATCAAAATTTCGGATCCAT+TGG | + | chr3_4:61326651-61326670 | Msa0511700:CDS | 30.0% | |
| TATGAGAGTAAATGGAACAA+AGG | - | chr3_4:61326857-61326876 | None:intergenic | 30.0% | |
| TATTGAATTGTCTTGGTTCA+AGG | - | chr3_4:61327218-61327237 | None:intergenic | 30.0% | |
| TTCAATGCAGCATTTAAAGA+AGG | + | chr3_4:61327419-61327438 | Msa0511700:intron | 30.0% | |
| TCAATGCAGCATTTAAAGAA+GGG | + | chr3_4:61327420-61327439 | Msa0511700:intron | 30.0% | |
| ! | ATTTGGAGAGAAGAAGTTTT+TGG | + | chr3_4:61327492-61327511 | Msa0511700:CDS | 30.0% |
| !! | AATGTTTTTACAGAGAGTAC+AGG | - | chr3_4:61327519-61327538 | None:intergenic | 30.0% |
| AATTTGGTATTTCACAGCTA+TGG | + | chr3_4:61327655-61327674 | Msa0511700:intron | 30.0% | |
| !!! | AGGGAGAATTAAAGGTATTT+TGG | - | chr3_4:61327971-61327990 | None:intergenic | 30.0% |
| !!! | TTGTTGTTGTTTTGTCATTC+AGG | + | chr3_4:61328036-61328055 | Msa0511700:intron | 30.0% |
| !!! | TGTTGTTGTTTTGTCATTCA+GGG | + | chr3_4:61328037-61328056 | Msa0511700:intron | 30.0% |
| !! | TTAACTATCACAGCTTTGAA+GGG | - | chr3_4:61328136-61328155 | None:intergenic | 30.0% |
| TAACATCAATGAAAGCAACA+TGG | - | chr3_4:61328312-61328331 | None:intergenic | 30.0% | |
| AAGCTCCTATACTCAACAAA+AGG | + | chr3_4:61324400-61324419 | Msa0511700:CDS | 35.0% | |
| ! | GGAATCCTTTTGTTGAGTAT+AGG | - | chr3_4:61324408-61324427 | None:intergenic | 35.0% |
| ! | CCTATGATATTTTCAGTGGA+GGG | - | chr3_4:61324441-61324460 | None:intergenic | 35.0% |
| ! | ACCTATGATATTTTCAGTGG+AGG | - | chr3_4:61324442-61324461 | None:intergenic | 35.0% |
| ! | CGTACCTATGATATTTTCAG+TGG | - | chr3_4:61324445-61324464 | None:intergenic | 35.0% |
| TTATAACGACTTCCAAGTTG+TGG | + | chr3_4:61324514-61324533 | Msa0511700:intron | 35.0% | |
| ATTCACATAATGCCACAACT+TGG | - | chr3_4:61324529-61324548 | None:intergenic | 35.0% | |
| AAGTTGTGGCATTATGTGAA+TGG | + | chr3_4:61324528-61324547 | Msa0511700:intron | 35.0% | |
| !! | TCTACCTTTGTTTCTGGAAA+TGG | - | chr3_4:61324629-61324648 | None:intergenic | 35.0% |
| ! | GAAATGAGTGTTGCACAATT+TGG | + | chr3_4:61324849-61324868 | Msa0511700:intron | 35.0% |
| GTTACTGAAATTGTCTCGAA+TGG | - | chr3_4:61324935-61324954 | None:intergenic | 35.0% | |
| GTGAGAATTGGAAAGGAAAA+AGG | - | chr3_4:61325035-61325054 | None:intergenic | 35.0% | |
| GTTATCTGTGAGAATTGGAA+AGG | - | chr3_4:61325042-61325061 | None:intergenic | 35.0% | |
| TCTCAGTTATCTGTGAGAAT+TGG | - | chr3_4:61325047-61325066 | None:intergenic | 35.0% | |
| TATATGATCAAACCACAGCA+GGG | - | chr3_4:61325210-61325229 | None:intergenic | 35.0% | |
| !!! | GTTGTTTTGAGTACTATGCT+GGG | + | chr3_4:61325244-61325263 | Msa0511700:CDS | 35.0% |
| !! | TTTGAAGGTATCCATAGGAA+GGG | - | chr3_4:61325310-61325329 | None:intergenic | 35.0% |
| !!! | TTTTGAAGGTATCCATAGGA+AGG | - | chr3_4:61325311-61325330 | None:intergenic | 35.0% |
| GAAGAAAAAAGCAGATACCA+TGG | - | chr3_4:61325378-61325397 | None:intergenic | 35.0% | |
| ATCTGCTTTGATGAGCTATT+TGG | + | chr3_4:61325434-61325453 | Msa0511700:intron | 35.0% | |
| TAGGAACTATCCTCTCTTAA+TGG | + | chr3_4:61325495-61325514 | Msa0511700:intron | 35.0% | |
| AATATTGAAGCCGTCTGAAT+TGG | + | chr3_4:61325561-61325580 | Msa0511700:CDS | 35.0% | |
| TATTAAAAACACCAGGAGGA+AGG | - | chr3_4:61325715-61325734 | None:intergenic | 35.0% | |
| GTTCAAACCTTATCAACATC+GGG | - | chr3_4:61325785-61325804 | None:intergenic | 35.0% | |
| ATTCGATAGATTTCCTTTGC+CGG | + | chr3_4:61325939-61325958 | Msa0511700:intron | 35.0% | |
| CATCCTCAAAAACAACTATC+GGG | - | chr3_4:61326129-61326148 | None:intergenic | 35.0% | |
| !! | CTTCTATTTCTACCAGTCTA+AGG | - | chr3_4:61326497-61326516 | None:intergenic | 35.0% |
| TGGTAAGTTAAGCACATATC+TGG | - | chr3_4:61326751-61326770 | None:intergenic | 35.0% | |
| TGCATGACTTTAACAACAAG+TGG | - | chr3_4:61326771-61326790 | None:intergenic | 35.0% | |
| AGTCATGCATTAGTTATTGG+TGG | + | chr3_4:61326782-61326801 | Msa0511700:intron | 35.0% | |
| ! | TTGGTTTAAGACGTTGTTTG+AGG | + | chr3_4:61326883-61326902 | Msa0511700:intron | 35.0% |
| TCGTATCTATATGCAAAAGG+AGG | + | chr3_4:61326912-61326931 | Msa0511700:intron | 35.0% | |
| ! | CATGCTAGCAGTAGATTTTT+CGG | - | chr3_4:61326988-61327007 | None:intergenic | 35.0% |
| ! | TTGGATAACAGAGAAAGCAT+TGG | - | chr3_4:61327044-61327063 | None:intergenic | 35.0% |
| TTTGCGTAGTTACCATGATT+TGG | + | chr3_4:61327136-61327155 | Msa0511700:intron | 35.0% | |
| TGTAAAAACATTTAGCACCG+AGG | + | chr3_4:61327527-61327546 | Msa0511700:CDS | 35.0% | |
| !!! | ACCACTTTTTTCTTCACTTG+TGG | + | chr3_4:61327614-61327633 | Msa0511700:intron | 35.0% |
| TCCACAAGTGAAGAAAAAAG+TGG | - | chr3_4:61327618-61327637 | None:intergenic | 35.0% | |
| TGATGTCAAAGCCACAAATT+TGG | + | chr3_4:61327639-61327658 | Msa0511700:intron | 35.0% | |
| GCTGTGAAATACCAAATTTG+TGG | - | chr3_4:61327653-61327672 | None:intergenic | 35.0% | |
| !!! | GTTGTTGTTTTGTCATTCAG+GGG | + | chr3_4:61328038-61328057 | Msa0511700:intron | 35.0% |
| ATACATATCTGATGAGCAGT+GGG | + | chr3_4:61328097-61328116 | Msa0511700:CDS | 35.0% | |
| !! | TAACTATCACAGCTTTGAAG+GGG | - | chr3_4:61328135-61328154 | None:intergenic | 35.0% |
| ! | GTTAACTATCACAGCTTTGA+AGG | - | chr3_4:61328137-61328156 | None:intergenic | 35.0% |
| TCAGTGGAGGGATTGATTAT+TGG | - | chr3_4:61324429-61324448 | None:intergenic | 40.0% | |
| CCCTCCACTGAAAATATCAT+AGG | + | chr3_4:61324438-61324457 | Msa0511700:CDS | 40.0% | |
| GGTACGTACCTTAATGTTTC+AGG | + | chr3_4:61324459-61324478 | Msa0511700:intron | 40.0% | |
| TGAATGGTTGACACAAATGC+AGG | + | chr3_4:61324544-61324563 | Msa0511700:intron | 40.0% | |
| GAATGGTTGACACAAATGCA+GGG | + | chr3_4:61324545-61324564 | Msa0511700:intron | 40.0% | |
| AATGGTTGACACAAATGCAG+GGG | + | chr3_4:61324546-61324565 | Msa0511700:intron | 40.0% | |
| ! | TTTTAGCAGCATCAACAGCA+AGG | - | chr3_4:61324603-61324622 | None:intergenic | 40.0% |
| AGAGCCATTTCCAGAAACAA+AGG | + | chr3_4:61324622-61324641 | Msa0511700:CDS | 40.0% | |
| ! | CCAATCTCTACCTTTGTTTC+TGG | - | chr3_4:61324635-61324654 | None:intergenic | 40.0% |
| CCAGAAACAAAGGTAGAGAT+TGG | + | chr3_4:61324632-61324651 | Msa0511700:CDS | 40.0% | |
| TGTATGTCTTGAGACCTGAT+TGG | + | chr3_4:61325006-61325025 | Msa0511700:intron | 40.0% | |
| AATAGATTGTGGAAAGCCAC+TGG | + | chr3_4:61325095-61325114 | Msa0511700:CDS | 40.0% | |
| CTATATGATCAAACCACAGC+AGG | - | chr3_4:61325211-61325230 | None:intergenic | 40.0% | |
| CTGCTGTGGTTTGATCATAT+AGG | + | chr3_4:61325209-61325228 | Msa0511700:intron | 40.0% | |
| !!! | GGTTGTTTTGAGTACTATGC+TGG | + | chr3_4:61325243-61325262 | Msa0511700:CDS | 40.0% |
| !!! | TGGCTTTTGAAGGTATCCAT+AGG | - | chr3_4:61325315-61325334 | None:intergenic | 40.0% |
| ! | CTTCAGAACATGGCTTTTGA+AGG | - | chr3_4:61325325-61325344 | None:intergenic | 40.0% |
| CTTCAAAAGCCATGTTCTGA+AGG | + | chr3_4:61325323-61325342 | Msa0511700:CDS | 40.0% | |
| TGCTTTGATGAGCTATTTGG+TGG | + | chr3_4:61325437-61325456 | Msa0511700:intron | 40.0% | |
| TACACAGATGCCAATTCAGA+CGG | - | chr3_4:61325574-61325593 | None:intergenic | 40.0% | |
| !!! | TTTTAGGACCTGTTTGGAGT+TGG | + | chr3_4:61325667-61325686 | Msa0511700:intron | 40.0% |
| ! | TTTAGGACCTGTTTGGAGTT+GGG | + | chr3_4:61325668-61325687 | Msa0511700:intron | 40.0% |
| GGCGAAATATGCAAAGAAGT+TGG | + | chr3_4:61325689-61325708 | Msa0511700:CDS | 40.0% | |
| AACCTTATCAACATCGGGAT+GGG | - | chr3_4:61325780-61325799 | None:intergenic | 40.0% | |
| AAACCTTATCAACATCGGGA+TGG | - | chr3_4:61325781-61325800 | None:intergenic | 40.0% | |
| CTATCGAATAATGCGCACAA+TGG | - | chr3_4:61325928-61325947 | None:intergenic | 40.0% | |
| TGAGGATGTTGACCTTGATA+AGG | + | chr3_4:61326141-61326160 | Msa0511700:CDS | 40.0% | |
| GAGGATGTTGACCTTGATAA+GGG | + | chr3_4:61326142-61326161 | Msa0511700:CDS | 40.0% | |
| ATGTTGACCTTGATAAGGGT+TGG | + | chr3_4:61326146-61326165 | Msa0511700:intron | 40.0% | |
| ATGTGTAACCTATGGCGTAA+TGG | + | chr3_4:61326213-61326232 | Msa0511700:intron | 40.0% | |
| ! | CGGCATATGAGCAAATGTTT+TGG | - | chr3_4:61326245-61326264 | None:intergenic | 40.0% |
| TTTGGCTGCTTCTTTACGAA+TGG | + | chr3_4:61326319-61326338 | Msa0511700:CDS | 40.0% | |
| TCTACCAGTCTAAGGAAATC+TGG | - | chr3_4:61326489-61326508 | None:intergenic | 40.0% | |
| ATTTCGGATCCATTGGAAGA+AGG | + | chr3_4:61326658-61326677 | Msa0511700:CDS | 40.0% | |
| ATTGGTGGAGAGATTGAAAG+CGG | + | chr3_4:61326797-61326816 | Msa0511700:intron | 40.0% | |
| CGAAAAATCTACTGCTAGCA+TGG | + | chr3_4:61326986-61327005 | Msa0511700:intron | 40.0% | |
| TCAGAAAGACAGCCAAATCA+TGG | - | chr3_4:61327151-61327170 | None:intergenic | 40.0% | |
| !! | GAAGGTGCAACAATTTTGAC+TGG | + | chr3_4:61327303-61327322 | Msa0511700:CDS | 40.0% |
| !!! | GTGCAACAATTTTGACTGGT+GGG | + | chr3_4:61327307-61327326 | Msa0511700:CDS | 40.0% |
| ! | GAGGGTATAATCATACCTCT+GGG | - | chr3_4:61327338-61327357 | None:intergenic | 40.0% |
| TGACTACCTCGATGCAAATT+TGG | + | chr3_4:61327475-61327494 | Msa0511700:CDS | 40.0% | |
| TTCTCTCCAAATTTGCATCG+AGG | - | chr3_4:61327484-61327503 | None:intergenic | 40.0% | |
| TAGATCGATTGCTTCTTCCT+CGG | - | chr3_4:61327547-61327566 | None:intergenic | 40.0% | |
| GTATTTCACAGCTATGGCTT+GGG | + | chr3_4:61327661-61327680 | Msa0511700:intron | 40.0% | |
| TATTTCACAGCTATGGCTTG+GGG | + | chr3_4:61327662-61327681 | Msa0511700:intron | 40.0% | |
| ! | ATCTAAGGTGAGAATAGTCC+AGG | + | chr3_4:61327726-61327745 | Msa0511700:intron | 40.0% |
| CTCTTCAAGCTGGAATTGTA+TGG | + | chr3_4:61327834-61327853 | Msa0511700:CDS | 40.0% | |
| AAGCTTCATTCAAGCTCCAT+GGG | + | chr3_4:61327874-61327893 | Msa0511700:CDS | 40.0% | |
| GATACATATCTGATGAGCAG+TGG | + | chr3_4:61328096-61328115 | Msa0511700:CDS | 40.0% | |
| TACATATCTGATGAGCAGTG+GGG | + | chr3_4:61328098-61328117 | Msa0511700:CDS | 40.0% | |
| GGATATACCAGCTGCTACTA+AGG | + | chr3_4:61324567-61324586 | Msa0511700:CDS | 45.0% | |
| ACATCTTCCTTAGTAGCAGC+TGG | - | chr3_4:61324577-61324596 | None:intergenic | 45.0% | |
| TCTTCGAGCAATTGCTGCAA+AGG | + | chr3_4:61324687-61324706 | Msa0511700:CDS | 45.0% | |
| AAGGAAAAAGGCAGCCAATC+AGG | - | chr3_4:61325023-61325042 | None:intergenic | 45.0% | |
| AGGGTTGGATGCAAAGCAAA+AGG | + | chr3_4:61325275-61325294 | Msa0511700:CDS | 45.0% | |
| GTATCCATAGGAAGGGATAC+AGG | - | chr3_4:61325303-61325322 | None:intergenic | 45.0% | |
| CAATAGGCTCCTTCAGAACA+TGG | - | chr3_4:61325335-61325354 | None:intergenic | 45.0% | |
| !! | CATGTTCTGAAGGAGCCTAT+TGG | + | chr3_4:61325333-61325352 | Msa0511700:CDS | 45.0% |
| ATCCTCTCTTAATGGCGACT+TGG | + | chr3_4:61325503-61325522 | Msa0511700:CDS | 45.0% | |
| TTCCAAGTCGCCATTAAGAG+AGG | - | chr3_4:61325508-61325527 | None:intergenic | 45.0% | |
| TATTTCGCCCAACTCCAAAC+AGG | - | chr3_4:61325678-61325697 | None:intergenic | 45.0% | |
| !! | CCAAAAAAGCACCAGCTTCA+TGG | - | chr3_4:61325754-61325773 | None:intergenic | 45.0% |
| !!! | CCATGAAGCTGGTGCTTTTT+TGG | + | chr3_4:61325751-61325770 | Msa0511700:CDS | 45.0% |
| ATCCCATCCCGATGTTGATA+AGG | + | chr3_4:61325775-61325794 | Msa0511700:CDS | 45.0% | |
| GAGCAAGATTATGACAGCTG+CGG | + | chr3_4:61325977-61325996 | Msa0511700:CDS | 45.0% | |
| !!! | GAGCCCGATAGTTGTTTTTG+AGG | + | chr3_4:61326123-61326142 | Msa0511700:CDS | 45.0% |
| GTTGCTGAATGGACCATCTT+TGG | + | chr3_4:61326301-61326320 | Msa0511700:intron | 45.0% | |
| CGTAAAGAAGCAGCCAAAGA+TGG | - | chr3_4:61326317-61326336 | None:intergenic | 45.0% | |
| ATCCATTGGAAGAAGGTTGC+AGG | + | chr3_4:61326665-61326684 | Msa0511700:CDS | 45.0% | |
| CCTGTGCTTCACTGACAATA+GGG | - | chr3_4:61326696-61326715 | None:intergenic | 45.0% | |
| ACCTGTGCTTCACTGACAAT+AGG | - | chr3_4:61326697-61326716 | None:intergenic | 45.0% | |
| ACTACACACTGCATGCAACT+TGG | - | chr3_4:61327106-61327125 | None:intergenic | 45.0% | |
| ATCTCAACGGCTAAGAGTGA+AGG | + | chr3_4:61327285-61327304 | Msa0511700:CDS | 45.0% | |
| !!! | GGTGCAACAATTTTGACTGG+TGG | + | chr3_4:61327306-61327325 | Msa0511700:CDS | 45.0% |
| ! | CGAGGGTATAATCATACCTC+TGG | - | chr3_4:61327339-61327358 | None:intergenic | 45.0% |
| TTGCATCGAGGTAGTCACAT+CGG | - | chr3_4:61327472-61327491 | None:intergenic | 45.0% | |
| GGTATTTCACAGCTATGGCT+TGG | + | chr3_4:61327660-61327679 | Msa0511700:intron | 45.0% | |
| AAGATGTGAGCGCGTATCTA+AGG | + | chr3_4:61327711-61327730 | Msa0511700:CDS | 45.0% | |
| CATGGAGCTTGAATGAAGCT+TGG | - | chr3_4:61327875-61327894 | None:intergenic | 45.0% | |
| CAAGCTTCATTCAAGCTCCA+TGG | + | chr3_4:61327873-61327892 | Msa0511700:CDS | 45.0% | |
| AGCTTCATTCAAGCTCCATG+GGG | + | chr3_4:61327875-61327894 | Msa0511700:CDS | 45.0% | |
| ! | GGCATTAAACGTAGCGGTTT+TGG | + | chr3_4:61327899-61327918 | Msa0511700:CDS | 45.0% |
| TTGGTCGCGAATTAGGAGAA+TGG | + | chr3_4:61327918-61327937 | Msa0511700:CDS | 45.0% | |
| ! | CTGAAGTCTGGCATCGAATA+AGG | + | chr3_4:61328184-61328203 | Msa0511700:three_prime_UTR | 45.0% |
| GCGTGACAGAGAGGAGAAAA+TGG | + | chr3_4:61324332-61324351 | Msa0511700:exon | 50.0% | |
| ! | AGAGATTGGTCCACTGCTTC+TGG | + | chr3_4:61324646-61324665 | Msa0511700:CDS | 50.0% |
| ACGAACAGAACCAGAAGCAG+TGG | - | chr3_4:61324659-61324678 | None:intergenic | 50.0% | |
| !! | TACTATGCTGGGCTTGCTGA+AGG | + | chr3_4:61325255-61325274 | Msa0511700:CDS | 50.0% |
| !! | ACTATGCTGGGCTTGCTGAA+GGG | + | chr3_4:61325256-61325275 | Msa0511700:CDS | 50.0% |
| !! | AAAGAAGTTGGCCTTCCTCC+TGG | + | chr3_4:61325701-61325720 | Msa0511700:CDS | 50.0% |
| ACCAGCTTCATGGCCTAATC+CGG | - | chr3_4:61325744-61325763 | None:intergenic | 50.0% | |
| CAGCCTGTTTCACTAGAGCT+TGG | + | chr3_4:61326094-61326113 | Msa0511700:intron | 50.0% | |
| ! | CCACCAAGCTCTAGTGAAAC+AGG | - | chr3_4:61326100-61326119 | None:intergenic | 50.0% |
| CCTGTTTCACTAGAGCTTGG+TGG | + | chr3_4:61326097-61326116 | Msa0511700:CDS | 50.0% | |
| AGGCACACCAACCCTTATCA+AGG | - | chr3_4:61326156-61326175 | None:intergenic | 50.0% | |
| GGATCACACCATTACGCCAT+AGG | - | chr3_4:61326224-61326243 | None:intergenic | 50.0% | |
| GGGTCCAGATTTCCTTAGAC+TGG | + | chr3_4:61326482-61326501 | Msa0511700:intron | 50.0% | |
| AGCCTGCAACCTTCTTCCAA+TGG | - | chr3_4:61326670-61326689 | None:intergenic | 50.0% | |
| TTGGAAGAAGGTTGCAGGCT+AGG | + | chr3_4:61326670-61326689 | Msa0511700:CDS | 50.0% | |
| CCCTATTGTCAGTGAAGCAC+AGG | + | chr3_4:61326693-61326712 | Msa0511700:CDS | 50.0% | |
| TACCCTCGAATACGTGTGCT+CGG | + | chr3_4:61327351-61327370 | Msa0511700:intron | 50.0% | |
| AACCGAGCACACGTATTCGA+GGG | - | chr3_4:61327356-61327375 | None:intergenic | 50.0% | |
| ! | GTCACATCGGTTACGATGGT+TGG | - | chr3_4:61327459-61327478 | None:intergenic | 50.0% |
| ! | GGTAGTCACATCGGTTACGA+TGG | - | chr3_4:61327463-61327482 | None:intergenic | 50.0% |
| ATTCTGCAGGCTCTTCAAGC+TGG | + | chr3_4:61327824-61327843 | Msa0511700:intron | 50.0% | |
| TTCATTCAAGCTCCATGGGG+AGG | + | chr3_4:61327878-61327897 | Msa0511700:CDS | 50.0% | |
| CTACGTTTAATGCCTCCCCA+TGG | - | chr3_4:61327893-61327912 | None:intergenic | 50.0% | |
| !! | TGGGGAGGCATTAAACGTAG+CGG | + | chr3_4:61327893-61327912 | Msa0511700:CDS | 50.0% |
| !! | AGCGGTTTTGGTCGCGAATT+AGG | + | chr3_4:61327911-61327930 | Msa0511700:CDS | 50.0% |
| GCATCGAATAAGGTGCGATG+TGG | + | chr3_4:61328194-61328213 | Msa0511700:three_prime_UTR | 50.0% | |
| ! | GCTAAGAGTGCGTGACAGAG+AGG | + | chr3_4:61324323-61324342 | Msa0511700:five_prime_UTR | 55.0% |
| !! | GCTTCTGGTTCTGTTCGTGC+TGG | + | chr3_4:61324661-61324680 | Msa0511700:CDS | 55.0% |
| ! | GCCACTGGATGAAGCACTAG+CGG | + | chr3_4:61325110-61325129 | Msa0511700:CDS | 55.0% |
| TCCGCTAGTGCTTCATCCAG+TGG | - | chr3_4:61325114-61325133 | None:intergenic | 55.0% | |
| ! | GGATGAAGCACTAGCGGATC+TGG | + | chr3_4:61325116-61325135 | Msa0511700:CDS | 55.0% |
| TGCTTACTTGGACCCTGCTG+TGG | + | chr3_4:61325195-61325214 | Msa0511700:intron | 55.0% | |
| GGCTCCTGTATCCCTTCCTA+TGG | + | chr3_4:61325296-61325315 | Msa0511700:CDS | 55.0% | |
| ! | ACCGGATTAGGCCATGAAGC+TGG | + | chr3_4:61325740-61325759 | Msa0511700:CDS | 55.0% |
| AGTTGCAGAGCTACCGGCAA+AGG | - | chr3_4:61325955-61325974 | None:intergenic | 55.0% | |
| ! | TTTGCCGGTAGCTCTGCAAC+TGG | + | chr3_4:61325954-61325973 | Msa0511700:CDS | 55.0% |
| ! | TTGCCGGTAGCTCTGCAACT+GGG | + | chr3_4:61325955-61325974 | Msa0511700:CDS | 55.0% |
| AGCTGCGGCACAGCTAATCA+AGG | + | chr3_4:61325992-61326011 | Msa0511700:CDS | 55.0% | |
| GAACCGAGCACACGTATTCG+AGG | - | chr3_4:61327357-61327376 | None:intergenic | 55.0% | |
| TATCTGATGAGCAGTGGGGC+TGG | + | chr3_4:61328102-61328121 | Msa0511700:CDS | 55.0% | |
| !! | TGCTGGGCTTGCTGAAGGGT+TGG | + | chr3_4:61325260-61325279 | Msa0511700:CDS | 60.0% |
| ! | ATCGCTCCAGCTCTAGCTGC+TGG | + | chr3_4:61325529-61325548 | Msa0511700:CDS | 60.0% |
| GCACAACCAGCAGCTAGAGC+TGG | - | chr3_4:61325538-61325557 | None:intergenic | 60.0% | |
| GCTCCCAGTTGCAGAGCTAC+CGG | - | chr3_4:61325961-61325980 | None:intergenic | 60.0% | |
| ! | GACTGGTGGGCGTCGCCCAG+AGG | + | chr3_4:61327320-61327339 | Msa0511700:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 61324208 | 61328347 | 61324208 | ID=Msa0511700;Name=Msa0511700 |
| chr3_4 | mRNA | 61324208 | 61328347 | 61324208 | ID=Msa0511700-mRNA-1;Parent=Msa0511700;Name=Msa0511700-mRNA-1;_AED=0.12;_eAED=0.12;_QI=143|1|1|1|1|1|15|199|503 |
| chr3_4 | exon | 61324208 | 61324459 | 61324208 | ID=Msa0511700-mRNA-1:exon:14911;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61324566 | 61324708 | 61324566 | ID=Msa0511700-mRNA-1:exon:14912;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61325057 | 61325137 | 61325057 | ID=Msa0511700-mRNA-1:exon:14913;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61325231 | 61325379 | 61325231 | ID=Msa0511700-mRNA-1:exon:14914;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61325498 | 61325590 | 61325498 | ID=Msa0511700-mRNA-1:exon:14915;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61325673 | 61325796 | 61325673 | ID=Msa0511700-mRNA-1:exon:14916;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61325948 | 61326013 | 61325948 | ID=Msa0511700-mRNA-1:exon:14917;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61326097 | 61326163 | 61326097 | ID=Msa0511700-mRNA-1:exon:14918;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61326302 | 61326378 | 61326302 | ID=Msa0511700-mRNA-1:exon:14919;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61326601 | 61326714 | 61326601 | ID=Msa0511700-mRNA-1:exon:14920;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61327264 | 61327341 | 61327264 | ID=Msa0511700-mRNA-1:exon:14921;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61327429 | 61327580 | 61327429 | ID=Msa0511700-mRNA-1:exon:14922;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61327672 | 61327732 | 61327672 | ID=Msa0511700-mRNA-1:exon:14923;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61327833 | 61327939 | 61327833 | ID=Msa0511700-mRNA-1:exon:14924;Parent=Msa0511700-mRNA-1 |
| chr3_4 | exon | 61328058 | 61328347 | 61328058 | ID=Msa0511700-mRNA-1:exon:14925;Parent=Msa0511700-mRNA-1 |
| chr3_4 | five_prime_UTR | 61324208 | 61324350 | 61324208 | ID=Msa0511700-mRNA-1:five_prime_utr;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61324351 | 61324459 | 61324351 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61324566 | 61324708 | 61324566 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61325057 | 61325137 | 61325057 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61325231 | 61325379 | 61325231 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61325498 | 61325590 | 61325498 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61325673 | 61325796 | 61325673 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61325948 | 61326013 | 61325948 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61326097 | 61326163 | 61326097 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61326302 | 61326378 | 61326302 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61326601 | 61326714 | 61326601 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61327264 | 61327341 | 61327264 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61327429 | 61327580 | 61327429 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61327672 | 61327732 | 61327672 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61327833 | 61327939 | 61327833 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | CDS | 61328058 | 61328148 | 61328058 | ID=Msa0511700-mRNA-1:cds;Parent=Msa0511700-mRNA-1 |
| chr3_4 | three_prime_UTR | 61328149 | 61328347 | 61328149 | ID=Msa0511700-mRNA-1:three_prime_utr;Parent=Msa0511700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
