Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465700 | XP_013461050.1 | 97.614 | 503 | 12 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1008 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465700 | sp|Q8VWZ1|AADH1_PEA | 92.247 | 503 | 39 | 0 | 1 | 503 | 1 | 503 | 0.0 | 935 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465700 | A0A072UZ53 | 97.614 | 503 | 12 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1008 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013970 | Msa0465700 | 0.812735 | 3.651000e-51 | -8.615850e-47 |
| Msa0371400 | Msa0465700 | 0.869156 | 3.822944e-66 | -8.615850e-47 |
| Msa0419570 | Msa0465700 | 0.805744 | 1.151418e-49 | -8.615850e-47 |
| Msa0419600 | Msa0465700 | 0.868906 | 4.609692e-66 | -8.615850e-47 |
| Msa0465700 | Msa0511700 | 0.974672 | 1.431669e-138 | -8.615850e-47 |
| Msa0250650 | Msa0465700 | 0.806472 | 8.091739e-50 | -8.615850e-47 |
| Msa0327570 | Msa0465700 | 0.803576 | 3.263180e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465700 | MtrunA17_Chr3g0118121 | 97.614 | 503 | 12 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1008 |
| Msa0465700 | MtrunA17_Chr3g0118081 | 92.445 | 503 | 38 | 0 | 1 | 503 | 31 | 533 | 0.0 | 937 |
| Msa0465700 | MtrunA17_Chr4g0059521 | 83.698 | 503 | 82 | 0 | 1 | 503 | 1 | 503 | 0.0 | 848 |
| Msa0465700 | MtrunA17_Chr8g0390631 | 41.176 | 493 | 279 | 5 | 4 | 494 | 10 | 493 | 4.12e-125 | 374 |
| Msa0465700 | MtrunA17_Chr6g0485301 | 41.785 | 493 | 276 | 5 | 4 | 494 | 18 | 501 | 1.84e-122 | 367 |
| Msa0465700 | MtrunA17_Chr6g0485311 | 40.771 | 493 | 281 | 5 | 4 | 494 | 16 | 499 | 2.12e-121 | 365 |
| Msa0465700 | MtrunA17_Chr8g0365221 | 38.945 | 493 | 288 | 6 | 5 | 494 | 58 | 540 | 1.27e-118 | 359 |
| Msa0465700 | MtrunA17_Chr8g0390651 | 39.271 | 494 | 287 | 6 | 4 | 494 | 19 | 502 | 7.65e-117 | 353 |
| Msa0465700 | MtrunA17_Chr2g0310091 | 39.832 | 477 | 277 | 3 | 9 | 485 | 63 | 529 | 2.73e-115 | 350 |
| Msa0465700 | MtrunA17_Chr4g0059221 | 39.468 | 489 | 283 | 6 | 9 | 494 | 65 | 543 | 8.98e-114 | 347 |
| Msa0465700 | MtrunA17_Chr3g0117861 | 38.604 | 487 | 286 | 6 | 11 | 494 | 65 | 541 | 1.82e-112 | 343 |
| Msa0465700 | MtrunA17_Chr4g0074171 | 34.322 | 472 | 281 | 11 | 9 | 470 | 17 | 469 | 4.06e-67 | 224 |
| Msa0465700 | MtrunA17_Chr1g0149961 | 33.617 | 470 | 283 | 11 | 11 | 470 | 19 | 469 | 2.76e-65 | 219 |
| Msa0465700 | MtrunA17_Chr2g0294411 | 28.747 | 487 | 325 | 8 | 23 | 499 | 64 | 538 | 3.53e-60 | 208 |
| Msa0465700 | MtrunA17_Chr2g0300801 | 29.400 | 483 | 308 | 12 | 11 | 480 | 25 | 487 | 2.58e-56 | 196 |
| Msa0465700 | MtrunA17_Chr2g0279751 | 29.979 | 477 | 301 | 10 | 25 | 487 | 32 | 489 | 1.25e-51 | 183 |
| Msa0465700 | MtrunA17_Chr4g0049641 | 28.392 | 479 | 322 | 9 | 25 | 495 | 59 | 524 | 7.87e-51 | 181 |
| Msa0465700 | MtrunA17_Chr3g0124811 | 32.133 | 361 | 230 | 7 | 130 | 485 | 97 | 447 | 9.25e-44 | 161 |
| Msa0465700 | MtrunA17_Chr8g0372381 | 30.963 | 436 | 277 | 13 | 60 | 485 | 17 | 438 | 2.40e-42 | 157 |
| Msa0465700 | MtrunA17_Chr8g0384741 | 29.977 | 427 | 277 | 10 | 68 | 485 | 85 | 498 | 2.00e-40 | 153 |
| Msa0465700 | MtrunA17_Chr1g0159811 | 30.769 | 338 | 219 | 7 | 130 | 462 | 95 | 422 | 5.28e-38 | 145 |
| Msa0465700 | MtrunA17_Chr2g0328781 | 27.292 | 480 | 299 | 16 | 46 | 500 | 12 | 466 | 5.12e-36 | 140 |
| Msa0465700 | MtrunA17_Chr4g0032441 | 28.222 | 450 | 303 | 10 | 60 | 500 | 13 | 451 | 2.33e-29 | 120 |
| Msa0465700 | MtrunA17_Chr4g0060261 | 26.557 | 305 | 190 | 11 | 144 | 429 | 187 | 476 | 7.78e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465700 | AT1G74920.1 | 77.246 | 501 | 114 | 0 | 1 | 501 | 1 | 501 | 0.0 | 845 |
| Msa0465700 | AT1G74920.2 | 76.248 | 501 | 114 | 1 | 1 | 501 | 1 | 496 | 0.0 | 829 |
| Msa0465700 | AT3G48170.1 | 75.547 | 503 | 123 | 0 | 1 | 503 | 1 | 503 | 0.0 | 822 |
| Msa0465700 | AT3G24503.1 | 43.238 | 488 | 267 | 5 | 9 | 494 | 21 | 500 | 4.53e-136 | 403 |
| Msa0465700 | AT3G48000.1 | 40.726 | 496 | 281 | 6 | 2 | 494 | 52 | 537 | 1.66e-122 | 369 |
| Msa0465700 | AT1G23800.1 | 38.742 | 493 | 289 | 6 | 5 | 494 | 51 | 533 | 9.24e-114 | 347 |
| Msa0465700 | AT1G79440.1 | 38.574 | 477 | 283 | 3 | 9 | 485 | 54 | 520 | 6.89e-106 | 326 |
| Msa0465700 | AT1G23800.2 | 38.690 | 336 | 195 | 5 | 5 | 337 | 51 | 378 | 1.31e-68 | 226 |
| Msa0465700 | AT3G66658.1 | 31.070 | 486 | 307 | 12 | 22 | 494 | 63 | 533 | 9.17e-65 | 219 |
| Msa0465700 | AT3G66658.2 | 31.070 | 486 | 307 | 12 | 22 | 494 | 63 | 533 | 2.31e-64 | 219 |
| Msa0465700 | AT2G24270.3 | 32.696 | 471 | 290 | 10 | 9 | 470 | 17 | 469 | 2.59e-64 | 217 |
| Msa0465700 | AT2G24270.1 | 32.696 | 471 | 290 | 10 | 9 | 470 | 17 | 469 | 2.59e-64 | 217 |
| Msa0465700 | AT2G24270.4 | 32.696 | 471 | 290 | 10 | 9 | 470 | 17 | 469 | 3.79e-64 | 217 |
| Msa0465700 | AT2G24270.2 | 32.696 | 471 | 290 | 10 | 9 | 470 | 57 | 509 | 4.21e-64 | 217 |
| Msa0465700 | AT1G54100.2 | 28.862 | 492 | 323 | 11 | 11 | 492 | 24 | 498 | 4.71e-56 | 195 |
| Msa0465700 | AT1G54100.1 | 28.862 | 492 | 323 | 11 | 11 | 492 | 24 | 498 | 4.71e-56 | 195 |
| Msa0465700 | AT2G14170.2 | 29.498 | 478 | 311 | 10 | 25 | 494 | 22 | 481 | 2.04e-53 | 188 |
| Msa0465700 | AT2G14170.1 | 29.498 | 478 | 311 | 10 | 25 | 494 | 131 | 590 | 9.23e-53 | 188 |
| Msa0465700 | AT2G14170.3 | 29.386 | 456 | 304 | 8 | 25 | 475 | 131 | 573 | 1.25e-50 | 182 |
| Msa0465700 | AT1G44170.3 | 31.025 | 361 | 234 | 7 | 130 | 485 | 28 | 378 | 1.20e-44 | 162 |
| Msa0465700 | AT1G44170.1 | 31.025 | 361 | 234 | 7 | 130 | 485 | 91 | 441 | 2.48e-44 | 163 |
| Msa0465700 | AT1G44170.2 | 31.025 | 361 | 234 | 7 | 130 | 485 | 91 | 441 | 2.48e-44 | 163 |
| Msa0465700 | AT4G36250.1 | 26.856 | 458 | 301 | 12 | 42 | 485 | 3 | 440 | 1.37e-34 | 136 |
| Msa0465700 | AT4G34240.4 | 29.234 | 431 | 286 | 10 | 61 | 485 | 72 | 489 | 6.77e-32 | 129 |
| Msa0465700 | AT4G34240.1 | 28.704 | 432 | 285 | 10 | 60 | 485 | 90 | 504 | 9.31e-32 | 129 |
| Msa0465700 | AT4G34240.3 | 30.812 | 357 | 230 | 9 | 136 | 485 | 16 | 362 | 2.82e-31 | 125 |
| Msa0465700 | AT4G34240.2 | 30.868 | 311 | 201 | 8 | 61 | 367 | 87 | 387 | 7.98e-20 | 92.0 |
Find 125 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCTCTACCTTTGTTTC+TGG | 0.123105 | 3_3:+66148336 | None:intergenic |
| GGCATTAAACGTAGCGGTTT+TGG | 0.201802 | 3_3:-66145032 | Msa0465700:CDS |
| TTTAATATTGTTACCGGATT+AGG | 0.224280 | 3_3:-66147240 | Msa0465700:CDS |
| AGAGATTGGTCCACTGCTTC+TGG | 0.281087 | 3_3:-66148322 | Msa0465700:CDS |
| TCAGTGGAGGGATTGATTAT+TGG | 0.289338 | 3_3:+66148542 | None:intergenic |
| CTGAAGTCTGGCATCGAATA+AGG | 0.289540 | 3_3:-66144747 | Msa0465700:three_prime_UTR |
| ATCATATAGGATGATGTTAT+TGG | 0.292168 | 3_3:-66147746 | Msa0465700:intron |
| TAGGAACTATCCTCTCTTAA+TGG | 0.308920 | 3_3:-66147473 | Msa0465700:CDS |
| GGCTGAAAATATCAAAATTT+CGG | 0.313683 | 3_3:-66146289 | Msa0465700:CDS |
| TCTACCTTTGTTTCTGGAAA+TGG | 0.315025 | 3_3:+66148342 | None:intergenic |
| TGACTACCTCGATGCAAATT+TGG | 0.321570 | 3_3:-66145456 | Msa0465700:CDS |
| GTATTTCACAGCTATGGCTT+GGG | 0.324222 | 3_3:-66145270 | Msa0465700:intron |
| GTTGCTGAATGGACCATCTT+TGG | 0.343607 | 3_3:-66146630 | Msa0465700:CDS |
| GCACAACCAGCAGCTAGAGC+TGG | 0.348346 | 3_3:+66147433 | None:intergenic |
| GCGTGACAGAGAGGAGAAAA+TGG | 0.351488 | 3_3:-66148636 | Msa0465700:exon |
| TAAATTTGATTTCTGAAGTC+TGG | 0.364661 | 3_3:-66144759 | Msa0465700:three_prime_UTR |
| TTGTGAATAAACTTGTGAAA+TGG | 0.372426 | 3_3:-66146311 | Msa0465700:CDS |
| ACCTGTGCTTCACTGACAAT+AGG | 0.380793 | 3_3:+66146237 | None:intergenic |
| AAGATGTGAGCGCGTATCTA+AGG | 0.388834 | 3_3:-66145220 | Msa0465700:intron |
| AATATTGAAGCCGTCTGAAT+TGG | 0.395523 | 3_3:-66147407 | Msa0465700:CDS |
| CCACCAAGCTCTAGTGAAAC+AGG | 0.398736 | 3_3:+66146871 | None:intergenic |
| TTAAACTTACATGCACAATA+AGG | 0.400421 | 3_3:+66146565 | None:intergenic |
| GGATATACCAGCTGCTACTA+AGG | 0.400740 | 3_3:-66148401 | Msa0465700:CDS |
| GGTATTTCACAGCTATGGCT+TGG | 0.402032 | 3_3:-66145271 | Msa0465700:intron |
| TTTAGGACCTGTTTGGAGTT+GGG | 0.403452 | 3_3:-66147300 | Msa0465700:intron |
| ATCCATTGGAAGAAGGTTGC+AGG | 0.404314 | 3_3:-66146266 | Msa0465700:CDS |
| TTTACCGGTAGCTCTGCAAC+TGG | 0.405109 | 3_3:-66147014 | Msa0465700:CDS |
| TGAGGATGTTGACCTTGATA+AGG | 0.409876 | 3_3:-66146827 | Msa0465700:CDS |
| ATTAATGCAACAACACCAAT+AGG | 0.410007 | 3_3:+66147620 | None:intergenic |
| AGTAGACAATTATTCATAGA+TGG | 0.413804 | 3_3:-66148599 | Msa0465700:CDS |
| ATTCGATAGATTTCCTTTAC+CGG | 0.420727 | 3_3:-66147029 | Msa0465700:intron |
| ATCCCATCCCGATGTTGATA+AGG | 0.425124 | 3_3:-66147193 | Msa0465700:intron |
| CCAGAAACAAAGGTAGAGAT+TGG | 0.430993 | 3_3:-66148336 | Msa0465700:CDS |
| CAGCCTGTTTCACTAGAGCT+TGG | 0.432951 | 3_3:-66146874 | Msa0465700:CDS |
| GGATGAAGCACTAGCGGATC+TGG | 0.434432 | 3_3:-66147852 | Msa0465700:intron |
| TTCAATGCAGCATTTAAAGA+AGG | 0.434642 | 3_3:-66145512 | Msa0465700:intron |
| TATCAAAATTTCGGATCCAT+TGG | 0.441214 | 3_3:-66146280 | Msa0465700:CDS |
| TGTGAATAAACTTGTGAAAT+GGG | 0.447654 | 3_3:-66146310 | Msa0465700:CDS |
| CTCTTCAAGCTGGAATTGTA+TGG | 0.448311 | 3_3:-66145097 | Msa0465700:CDS |
| GTTATTAAACAGTTGCTGAA+TGG | 0.450207 | 3_3:-66146641 | Msa0465700:intron |
| GGCTCCTGTATCCCTTCCTA+TGG | 0.450658 | 3_3:-66147672 | Msa0465700:CDS |
| TGCTGGGCTTGCTGAAGGGT+TGG | 0.452991 | 3_3:-66147708 | Msa0465700:CDS |
| TTATTGTTATCTTAAGTTGT+TGG | 0.457855 | 3_3:-66144703 | Msa0465700:three_prime_UTR |
| GTTAACTATCACAGCTTTGA+AGG | 0.463549 | 3_3:+66144797 | None:intergenic |
| AAATTTATCATCACTTTACA+TGG | 0.464511 | 3_3:+66144775 | None:intergenic |
| TTGGAAGAAGGTTGCAGGCT+AGG | 0.469097 | 3_3:-66146261 | Msa0465700:CDS |
| GAGGATGTTGACCTTGATAA+GGG | 0.470972 | 3_3:-66146826 | Msa0465700:intron |
| AAGTTTATTCACAAATTCTA+CGG | 0.471124 | 3_3:+66146320 | None:intergenic |
| ACCAGCTTCATGGCCTAATC+CGG | 0.472397 | 3_3:+66147227 | None:intergenic |
| ATTTCGGATCCATTGGAAGA+AGG | 0.477666 | 3_3:-66146273 | Msa0465700:CDS |
| TACTATGCTGGGCTTGCTGA+AGG | 0.480607 | 3_3:-66147713 | Msa0465700:CDS |
| CCCTATTGTCAGTGAAGCAC+AGG | 0.482906 | 3_3:-66146238 | Msa0465700:intron |
| ATTCTGCAGGCTCTTCAAGC+TGG | 0.483750 | 3_3:-66145107 | Msa0465700:intron |
| CCTGTGCTTCACTGACAATA+GGG | 0.485460 | 3_3:+66146238 | None:intergenic |
| GTTCAAACCTTATCAACATC+GGG | 0.486154 | 3_3:+66147186 | None:intergenic |
| AGTTGCAGAGCTACCGGTAA+AGG | 0.487812 | 3_3:+66147016 | None:intergenic |
| GTATCCATAGGAAGGGATAC+AGG | 0.493292 | 3_3:+66147668 | None:intergenic |
| TATTTCGCCCAACTCCAAAC+AGG | 0.497837 | 3_3:+66147293 | None:intergenic |
| CATGTTCTGAAGGAGCCTAT+TGG | 0.499786 | 3_3:-66147635 | Msa0465700:CDS |
| CGTAAAGAAGCAGCCAAAGA+TGG | 0.503081 | 3_3:+66146617 | None:intergenic |
| GTCACATCGGTTACGATGGT+TGG | 0.503397 | 3_3:+66145475 | None:intergenic |
| CAAGCTTCATTCAAGCTCCA+TGG | 0.506934 | 3_3:-66145058 | Msa0465700:CDS |
| GCTTCTGGTTCTGTTCGTGC+TGG | 0.509086 | 3_3:-66148307 | Msa0465700:CDS |
| AAAGAAGTTGGCCTTCCTCC+TGG | 0.512329 | 3_3:-66147267 | Msa0465700:CDS |
| AAGCTCCTATACTCAACAAA+AGG | 0.512483 | 3_3:-66148568 | Msa0465700:CDS |
| CCTGTTTCACTAGAGCTTGG+TGG | 0.513971 | 3_3:-66146871 | Msa0465700:CDS |
| TTTGGCTGCTTCTTTACGAA+TGG | 0.514086 | 3_3:-66146612 | Msa0465700:CDS |
| AAGCTTCATTCAAGCTCCAT+GGG | 0.519280 | 3_3:-66145057 | Msa0465700:CDS |
| AACCTTATCAACATCGGGAT+GGG | 0.520697 | 3_3:+66147191 | None:intergenic |
| ACATCTTCCTTAGTAGCAGC+TGG | 0.522852 | 3_3:+66148394 | None:intergenic |
| ATACATATCTGATGAGCAGT+GGG | 0.523721 | 3_3:-66144834 | Msa0465700:CDS |
| ATCGCTCCAGCTCTAGCTGC+TGG | 0.524125 | 3_3:-66147439 | Msa0465700:CDS |
| AGGGTTGGATGCAAAGCAAA+AGG | 0.525153 | 3_3:-66147693 | Msa0465700:CDS |
| TTGGTCGCGAATTAGGAGAA+TGG | 0.527821 | 3_3:-66145013 | Msa0465700:intron |
| GCTCCCAGTTGCAGAGCTAC+CGG | 0.528239 | 3_3:+66147010 | None:intergenic |
| TCTTCGAGCAATTGCTGCAA+AGG | 0.528718 | 3_3:-66148281 | Msa0465700:intron |
| ATCCTCTCTTAATGGCGACT+TGG | 0.533379 | 3_3:-66147465 | Msa0465700:CDS |
| TATTTCACAGCTATGGCTTG+GGG | 0.535756 | 3_3:-66145269 | Msa0465700:intron |
| AATAGATTGTGGAAAGCCAC+TGG | 0.537548 | 3_3:-66147873 | Msa0465700:CDS |
| TATCTGATGAGCAGTGGGGC+TGG | 0.538103 | 3_3:-66144829 | Msa0465700:CDS |
| AACTTAAGATAACAATAACT+TGG | 0.542633 | 3_3:+66144708 | None:intergenic |
| TTGTTGCATTAATTACTCCA+TGG | 0.543900 | 3_3:-66147610 | Msa0465700:intron |
| GGCGAAATATGCAAAGAAGT+TGG | 0.547648 | 3_3:-66147279 | Msa0465700:CDS |
| TCAATGCAGCATTTAAAGAA+GGG | 0.549849 | 3_3:-66145511 | Msa0465700:intron |
| CTTCAAAAGCCATGTTCTGA+AGG | 0.554689 | 3_3:-66147645 | Msa0465700:CDS |
| AGGCACACCAACCCTTATCA+AGG | 0.555964 | 3_3:+66146815 | None:intergenic |
| AGCCTGCAACCTTCTTCCAA+TGG | 0.556310 | 3_3:+66146264 | None:intergenic |
| TTAACTATCACAGCTTTGAA+GGG | 0.557676 | 3_3:+66144798 | None:intergenic |
| TAGATCGATTGCTTCTTCCT+CGG | 0.561075 | 3_3:+66145387 | None:intergenic |
| ATCTCAACGGCTAAGAGTGA+AGG | 0.561409 | 3_3:-66145646 | Msa0465700:CDS |
| AGCTGCGGCACAGCTAATCA+AGG | 0.562042 | 3_3:-66146976 | Msa0465700:intron |
| ACCGGATTAGGCCATGAAGC+TGG | 0.566934 | 3_3:-66147228 | Msa0465700:CDS |
| CATGGAGCTTGAATGAAGCT+TGG | 0.568220 | 3_3:+66145059 | None:intergenic |
| ATAATATTATCATTATAGCA+TGG | 0.568490 | 3_3:-66148722 | Msa0465700:five_prime_UTR |
| CAATAGGCTCCTTCAGAACA+TGG | 0.568769 | 3_3:+66147636 | None:intergenic |
| TCCGCTAGTGCTTCATCCAG+TGG | 0.569359 | 3_3:+66147857 | None:intergenic |
| ACTATGCTGGGCTTGCTGAA+GGG | 0.576322 | 3_3:-66147712 | Msa0465700:CDS |
| AGTTCAAACCTTATCAACAT+CGG | 0.576734 | 3_3:+66147185 | None:intergenic |
| GACTGGTGGGCGTCGCCCAG+AGG | 0.577345 | 3_3:-66145611 | Msa0465700:intron |
| AAGCTTGAATCAATAGATTG+TGG | 0.586574 | 3_3:-66147884 | Msa0465700:CDS |
| AAACCTTATCAACATCGGGA+TGG | 0.586805 | 3_3:+66147190 | None:intergenic |
| TTCCAAGTCGCCATTAAGAG+AGG | 0.587691 | 3_3:+66147463 | None:intergenic |
| TAACTATCACAGCTTTGAAG+GGG | 0.590762 | 3_3:+66144799 | None:intergenic |
| TTTGAAGGTATCCATAGGAA+GGG | 0.604376 | 3_3:+66147661 | None:intergenic |
| TTCATTCAAGCTCCATGGGG+AGG | 0.608597 | 3_3:-66145053 | Msa0465700:CDS |
| CTACGTTTAATGCCTCCCCA+TGG | 0.609880 | 3_3:+66145041 | None:intergenic |
| AATTATTCATAGATGGAGAG+TGG | 0.612529 | 3_3:-66148592 | Msa0465700:CDS |
| TACACAGATGCCAATTCAGA+CGG | 0.614415 | 3_3:+66147397 | None:intergenic |
| AGAGCCATTTCCAGAAACAA+AGG | 0.615015 | 3_3:-66148346 | Msa0465700:CDS |
| GCCACTGGATGAAGCACTAG+CGG | 0.621235 | 3_3:-66147858 | Msa0465700:CDS |
| GCTAAGAGTGCGTGACAGAG+AGG | 0.621700 | 3_3:-66148645 | Msa0465700:five_prime_UTR |
| GATACATATCTGATGAGCAG+TGG | 0.625206 | 3_3:-66144835 | Msa0465700:CDS |
| TTACCGGTAGCTCTGCAACT+GGG | 0.626292 | 3_3:-66147013 | Msa0465700:CDS |
| GGTAGTCACATCGGTTACGA+TGG | 0.633466 | 3_3:+66145471 | None:intergenic |
| TTGCATCGAGGTAGTCACAT+CGG | 0.634094 | 3_3:+66145462 | None:intergenic |
| TTCTCTCCAAATTTGCATCG+AGG | 0.647218 | 3_3:+66145450 | None:intergenic |
| ACGAACAGAACCAGAAGCAG+TGG | 0.650272 | 3_3:+66148312 | None:intergenic |
| CCCTCCACTGAAAATATCGT+AGG | 0.659041 | 3_3:-66148530 | Msa0465700:intron |
| GAGCAAGATTATGACAGCTG+CGG | 0.668052 | 3_3:-66146991 | Msa0465700:CDS |
| TGGGGAGGCATTAAACGTAG+CGG | 0.693952 | 3_3:-66145038 | Msa0465700:CDS |
| AAGAAAGAAACGTATACACA+AGG | 0.695848 | 3_3:-66148673 | Msa0465700:five_prime_UTR |
| TAACATCAATGAAAGCAACA+TGG | 0.708034 | 3_3:+66144622 | None:intergenic |
| AGCTTCATTCAAGCTCCATG+GGG | 0.709625 | 3_3:-66145056 | Msa0465700:CDS |
| GCATCGAATAAGGTGCGATG+TGG | 0.714161 | 3_3:-66144737 | Msa0465700:three_prime_UTR |
| TACATATCTGATGAGCAGTG+GGG | 0.771154 | 3_3:-66144833 | Msa0465700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTGATTTTATTATATATT+AGG | - | chr3_3:66145874-66145893 | Msa0465700:intron | 10.0% |
| !! | ACAAATTAATAAACTATAAA+CGG | + | chr3_3:66146700-66146719 | None:intergenic | 10.0% |
| !!! | AATTTTCTTATTGTATAAAT+CGG | - | chr3_3:66146893-66146912 | Msa0465700:intron | 10.0% |
| !! | ATAATATTATCATTATAGCA+TGG | - | chr3_3:66144644-66144663 | Msa0465700:three_prime_UTR | 15.0% |
| !!! | ACAATTCAATATCTAAAATT+TGG | - | chr3_3:66147662-66147681 | Msa0465700:CDS | 15.0% |
| !!! | CAATTCAATATCTAAAATTT+GGG | - | chr3_3:66147663-66147682 | Msa0465700:CDS | 15.0% |
| !!! | TTGATTTTTTTTCTAACTAA+TGG | - | chr3_3:66148216-66148235 | Msa0465700:intron | 15.0% |
| !!! | TTCTTTCTTTTTTCAAAGAT+TGG | + | chr3_3:66144682-66144701 | None:intergenic | 20.0% |
| !! | AAAAAAAACCAGAAACATTA+AGG | + | chr3_3:66144868-66144887 | None:intergenic | 20.0% |
| !!! | TTCAATTTCATGGATTATTT+TGG | + | chr3_3:66145291-66145310 | None:intergenic | 20.0% |
| !! | AAACAAAAAAGAAAGAAGTA+CGG | + | chr3_3:66145570-66145589 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTTGCTTACT+TGG | - | chr3_3:66145581-66145600 | Msa0465700:intron | 20.0% |
| !!! | CAAATGATTTTGTTCATTAA+TGG | - | chr3_3:66146213-66146232 | Msa0465700:intron | 20.0% |
| !! | ACATGTATTATTGATGAAAT+GGG | + | chr3_3:66146844-66146863 | None:intergenic | 20.0% |
| !! | AACATGTATTATTGATGAAA+TGG | + | chr3_3:66146845-66146864 | None:intergenic | 20.0% |
| !! | AAGTTTATTCACAAATTCTA+CGG | + | chr3_3:66147049-66147068 | None:intergenic | 20.0% |
| !! | AAAAATCTTATGAGAGTAAA+TGG | + | chr3_3:66147300-66147319 | None:intergenic | 20.0% |
| !!! | ATTTACTCTCATAAGATTTT+TGG | - | chr3_3:66147299-66147318 | Msa0465700:intron | 20.0% |
| !!! | ACTACTATATGTTTTCATTT+TGG | + | chr3_3:66147498-66147517 | None:intergenic | 20.0% |
| !!! | CTTAATGTTTTTAAATTGCA+CGG | + | chr3_3:66147609-66147628 | None:intergenic | 20.0% |
| !!! | TTTTAGATATTGAATTGTCT+TGG | + | chr3_3:66147660-66147679 | None:intergenic | 20.0% |
| !!! | AGTATTGAATTTTATCTCAA+CGG | - | chr3_3:66147707-66147726 | Msa0465700:CDS | 20.0% |
| !! | TCACATTTGAAAATATTAGA+GGG | + | chr3_3:66148425-66148444 | None:intergenic | 20.0% |
| !! | TTCACATTTGAAAATATTAG+AGG | + | chr3_3:66148426-66148445 | None:intergenic | 20.0% |
| !! | AAATTTATCATCACTTTACA+TGG | + | chr3_3:66148594-66148613 | None:intergenic | 20.0% |
| !! | AACTTAAGATAACAATAACT+TGG | + | chr3_3:66148661-66148680 | None:intergenic | 20.0% |
| !!! | TTATTGTTATCTTAAGTTGT+TGG | - | chr3_3:66148663-66148682 | Msa0465700:five_prime_UTR | 20.0% |
| ! | AGTAGACAATTATTCATAGA+TGG | - | chr3_3:66144767-66144786 | Msa0465700:three_prime_UTR | 25.0% |
| !!! | TTCTATTTTTGCTCTTGATA+TGG | - | chr3_3:66145120-66145139 | Msa0465700:intron | 25.0% |
| !! | ATCTACGATTTTCAATTTCA+TGG | + | chr3_3:66145301-66145320 | None:intergenic | 25.0% |
| ! | ATTTCAGTAACTAAAACTGT+TGG | - | chr3_3:66145342-66145361 | Msa0465700:intron | 25.0% |
| ! | TTTCAGTAACTAAAACTGTT+GGG | - | chr3_3:66145343-66145362 | Msa0465700:intron | 25.0% |
| ! | ATCATATAGGATGATGTTAT+TGG | - | chr3_3:66145620-66145639 | Msa0465700:CDS | 25.0% |
| !! | GTCTTATCGTTTACAATTTT+AGG | - | chr3_3:66146049-66146068 | Msa0465700:intron | 25.0% |
| ! | GTAACAATATTAAAAACACC+AGG | + | chr3_3:66146120-66146139 | None:intergenic | 25.0% |
| !!! | GGTGTTTTTAATATTGTTAC+CGG | - | chr3_3:66146120-66146139 | Msa0465700:intron | 25.0% |
| ! | TTTAATATTGTTACCGGATT+AGG | - | chr3_3:66146126-66146145 | Msa0465700:intron | 25.0% |
| ! | CAAATTAGACATATTTGAGA+AGG | + | chr3_3:66146574-66146593 | None:intergenic | 25.0% |
| ! | TCTCAAATATGTCTAATTTG+TGG | - | chr3_3:66146574-66146593 | Msa0465700:intron | 25.0% |
| !! | TTTCTTGCAATGTCAATTTT+TGG | - | chr3_3:66146624-66146643 | Msa0465700:CDS | 25.0% |
| ! | ATTCAGCAACTGTTTAATAA+CGG | + | chr3_3:66146726-66146745 | None:intergenic | 25.0% |
| ! | TTAAACTTACATGCACAATA+AGG | + | chr3_3:66146804-66146823 | None:intergenic | 25.0% |
| ! | CATGTATTATTGATGAAATG+GGG | + | chr3_3:66146843-66146862 | None:intergenic | 25.0% |
| ! | TTTCTTATTGTATAAATCGG+AGG | - | chr3_3:66146896-66146915 | Msa0465700:intron | 25.0% |
| ! | TTCTTATTGTATAAATCGGA+GGG | - | chr3_3:66146897-66146916 | Msa0465700:intron | 25.0% |
| ! | TAAAACACTTATACTGTTTC+AGG | - | chr3_3:66147014-66147033 | Msa0465700:CDS | 25.0% |
| ! | TTGTGAATAAACTTGTGAAA+TGG | - | chr3_3:66147055-66147074 | Msa0465700:intron | 25.0% |
| ! | TGTGAATAAACTTGTGAAAT+GGG | - | chr3_3:66147056-66147075 | Msa0465700:intron | 25.0% |
| ! | GGCTGAAAATATCAAAATTT+CGG | - | chr3_3:66147077-66147096 | Msa0465700:intron | 25.0% |
| ! | TAAAGTCATGCATTAGTTAT+TGG | - | chr3_3:66147214-66147233 | Msa0465700:CDS | 25.0% |
| ! | TTATCGTATCTATATGCAAA+AGG | - | chr3_3:66147344-66147363 | Msa0465700:intron | 25.0% |
| !! | AAAAGGAGGTTTTTAATCAA+TGG | - | chr3_3:66147361-66147380 | Msa0465700:intron | 25.0% |
| !!! | TTTAATCAATGGCTTTAGTT+TGG | - | chr3_3:66147372-66147391 | Msa0465700:intron | 25.0% |
| !! | TCTTTTATGATAGTATATCC+TGG | + | chr3_3:66148182-66148201 | None:intergenic | 25.0% |
| !! | ACTTATATTGATTATTCTGC+AGG | - | chr3_3:66148246-66148265 | Msa0465700:intron | 25.0% |
| !!! | GAGATTTTAAGAAACAAGAT+TGG | + | chr3_3:66148384-66148403 | None:intergenic | 25.0% |
| ! | AATATTAGAGGGAGAATTAA+AGG | + | chr3_3:66148414-66148433 | None:intergenic | 25.0% |
| !!! | TAAATTTGATTTCTGAAGTC+TGG | - | chr3_3:66148607-66148626 | Msa0465700:CDS | 25.0% |
| AAGAAAGAAACGTATACACA+AGG | - | chr3_3:66144693-66144712 | Msa0465700:three_prime_UTR | 30.0% | |
| AATTATTCATAGATGGAGAG+TGG | - | chr3_3:66144774-66144793 | Msa0465700:three_prime_UTR | 30.0% | |
| ! | TTGCTCTTGATATGGATTAA+AGG | - | chr3_3:66145128-66145147 | Msa0465700:intron | 30.0% |
| ! | TGCTCTTGATATGGATTAAA+GGG | - | chr3_3:66145129-66145148 | Msa0465700:intron | 30.0% |
| ACTGAGAAAAAGAATGAACT+AGG | - | chr3_3:66145458-66145477 | Msa0465700:CDS | 30.0% | |
| AAGCTTGAATCAATAGATTG+TGG | - | chr3_3:66145482-66145501 | Msa0465700:CDS | 30.0% | |
| TCTGGTAATTATTATTCGAC+TGG | - | chr3_3:66145532-66145551 | Msa0465700:intron | 30.0% | |
| ATTAATGCAACAACACCAAT+AGG | + | chr3_3:66145749-66145768 | None:intergenic | 30.0% | |
| TTGTTGCATTAATTACTCCA+TGG | - | chr3_3:66145756-66145775 | Msa0465700:intron | 30.0% | |
| !!! | TTACAATTTTAGGACCTGTT+TGG | - | chr3_3:66146059-66146078 | Msa0465700:intron | 30.0% |
| ACAATATTAAAAACACCAGG+AGG | + | chr3_3:66146117-66146136 | None:intergenic | 30.0% | |
| AGTTCAAACCTTATCAACAT+CGG | + | chr3_3:66146184-66146203 | None:intergenic | 30.0% | |
| AACTATAAGAAGCTAGATCT+TGG | - | chr3_3:66146241-66146260 | Msa0465700:CDS | 30.0% | |
| ATTCGATAGATTTCCTTTAC+CGG | - | chr3_3:66146337-66146356 | Msa0465700:intron | 30.0% | |
| ACATCCTCAAAAACAACTAT+CGG | + | chr3_3:66146528-66146547 | None:intergenic | 30.0% | |
| GTTATTAAACAGTTGCTGAA+TGG | - | chr3_3:66146725-66146744 | Msa0465700:intron | 30.0% | |
| ! | CCAATAATAGACTTGGTAAA+AGG | + | chr3_3:66146966-66146985 | None:intergenic | 30.0% |
| ! | CCTTTTACCAAGTCTATTAT+TGG | - | chr3_3:66146963-66146982 | Msa0465700:intron | 30.0% |
| ATCAAAGCCAATAATAGACT+TGG | + | chr3_3:66146973-66146992 | None:intergenic | 30.0% | |
| TATCAAAATTTCGGATCCAT+TGG | - | chr3_3:66147086-66147105 | Msa0465700:intron | 30.0% | |
| TATGAGAGTAAATGGAACAA+AGG | + | chr3_3:66147292-66147311 | None:intergenic | 30.0% | |
| TATTGAATTGTCTTGGTTCA+AGG | + | chr3_3:66147653-66147672 | None:intergenic | 30.0% | |
| TTCAATGCAGCATTTAAAGA+AGG | - | chr3_3:66147854-66147873 | Msa0465700:CDS | 30.0% | |
| TCAATGCAGCATTTAAAGAA+GGG | - | chr3_3:66147855-66147874 | Msa0465700:CDS | 30.0% | |
| ! | ATTTGGAGAGAAGAAGTTTT+TGG | - | chr3_3:66147927-66147946 | Msa0465700:intron | 30.0% |
| !! | AATGTTTTTACAGAGAGTAC+AGG | + | chr3_3:66147954-66147973 | None:intergenic | 30.0% |
| AATTTGGTATTTCACAGCTA+TGG | - | chr3_3:66148090-66148109 | Msa0465700:intron | 30.0% | |
| !!! | AGGGAGAATTAAAGGTATTT+TGG | + | chr3_3:66148406-66148425 | None:intergenic | 30.0% |
| !!! | TTGTTGTTGTTTTGTCATTC+AGG | - | chr3_3:66148471-66148490 | Msa0465700:intron | 30.0% |
| !!! | TGTTGTTGTTTTGTCATTCA+GGG | - | chr3_3:66148472-66148491 | Msa0465700:intron | 30.0% |
| !! | TTAACTATCACAGCTTTGAA+GGG | + | chr3_3:66148571-66148590 | None:intergenic | 30.0% |
| TAACATCAATGAAAGCAACA+TGG | + | chr3_3:66148747-66148766 | None:intergenic | 30.0% | |
| AAGCTCCTATACTCAACAAA+AGG | - | chr3_3:66144798-66144817 | Msa0465700:exon | 35.0% | |
| ! | GGAATCCTTTTGTTGAGTAT+AGG | + | chr3_3:66144806-66144825 | None:intergenic | 35.0% |
| TTATAACGACTTCCAAGTTG+TGG | - | chr3_3:66144912-66144931 | Msa0465700:intron | 35.0% | |
| ATTCACATAATGCCACAACT+TGG | + | chr3_3:66144927-66144946 | None:intergenic | 35.0% | |
| AAGTTGTGGCATTATGTGAA+TGG | - | chr3_3:66144926-66144945 | Msa0465700:intron | 35.0% | |
| !! | TCTACCTTTGTTTCTGGAAA+TGG | + | chr3_3:66145027-66145046 | None:intergenic | 35.0% |
| ! | GAAATGAGTGTTGCACAATT+TGG | - | chr3_3:66145247-66145266 | Msa0465700:CDS | 35.0% |
| GTTACTGAAATTGTCTCGAA+TGG | + | chr3_3:66145333-66145352 | None:intergenic | 35.0% | |
| GTGAGAATTGGAAAGGAAAA+AGG | + | chr3_3:66145433-66145452 | None:intergenic | 35.0% | |
| GTTATCTGTGAGAATTGGAA+AGG | + | chr3_3:66145440-66145459 | None:intergenic | 35.0% | |
| TCTCAGTTATCTGTGAGAAT+TGG | + | chr3_3:66145445-66145464 | None:intergenic | 35.0% | |
| TATATGATCAAACCACAGCA+GGG | + | chr3_3:66145608-66145627 | None:intergenic | 35.0% | |
| !!! | GTTGTTTTGAGTACTATGCT+GGG | - | chr3_3:66145642-66145661 | Msa0465700:CDS | 35.0% |
| !! | TTTGAAGGTATCCATAGGAA+GGG | + | chr3_3:66145708-66145727 | None:intergenic | 35.0% |
| !!! | TTTTGAAGGTATCCATAGGA+AGG | + | chr3_3:66145709-66145728 | None:intergenic | 35.0% |
| GAAGAAAAAAGCAGATACCA+TGG | + | chr3_3:66145776-66145795 | None:intergenic | 35.0% | |
| ATCTGCTTTGATGAGCTATT+TGG | - | chr3_3:66145832-66145851 | Msa0465700:intron | 35.0% | |
| TAGGAACTATCCTCTCTTAA+TGG | - | chr3_3:66145893-66145912 | Msa0465700:intron | 35.0% | |
| AATATTGAAGCCGTCTGAAT+TGG | - | chr3_3:66145959-66145978 | Msa0465700:intron | 35.0% | |
| TATTAAAAACACCAGGAGGA+AGG | + | chr3_3:66146113-66146132 | None:intergenic | 35.0% | |
| GTTCAAACCTTATCAACATC+GGG | + | chr3_3:66146183-66146202 | None:intergenic | 35.0% | |
| CATCCTCAAAAACAACTATC+GGG | + | chr3_3:66146527-66146546 | None:intergenic | 35.0% | |
| !! | TTTTTGGTATCCGTAACCTA+TGG | - | chr3_3:66146640-66146659 | Msa0465700:intron | 35.0% |
| !! | CTTCTATTTCTACCAGTCTA+AGG | + | chr3_3:66146932-66146951 | None:intergenic | 35.0% |
| TGCATGACTTTAACAACAAG+TGG | + | chr3_3:66147206-66147225 | None:intergenic | 35.0% | |
| AGTCATGCATTAGTTATTGG+TGG | - | chr3_3:66147217-66147236 | Msa0465700:CDS | 35.0% | |
| ! | TTGGTTTAAGACGTTGTTTG+AGG | - | chr3_3:66147318-66147337 | Msa0465700:intron | 35.0% |
| TCGTATCTATATGCAAAAGG+AGG | - | chr3_3:66147347-66147366 | Msa0465700:intron | 35.0% | |
| ! | CATGCTAGCAGTAGATTTTT+CGG | + | chr3_3:66147423-66147442 | None:intergenic | 35.0% |
| ! | TTGGATAACAGAGAAAGCAT+TGG | + | chr3_3:66147479-66147498 | None:intergenic | 35.0% |
| TTTGCGTAGTTACCATGATT+TGG | - | chr3_3:66147571-66147590 | Msa0465700:intron | 35.0% | |
| TGTAAAAACATTTAGCACCG+AGG | - | chr3_3:66147962-66147981 | Msa0465700:intron | 35.0% | |
| !!! | ACCACTTTTTTCTTCACTTG+TGG | - | chr3_3:66148049-66148068 | Msa0465700:intron | 35.0% |
| TCCACAAGTGAAGAAAAAAG+TGG | + | chr3_3:66148053-66148072 | None:intergenic | 35.0% | |
| TGATGTCAAAGCCACAAATT+TGG | - | chr3_3:66148074-66148093 | Msa0465700:intron | 35.0% | |
| GCTGTGAAATACCAAATTTG+TGG | + | chr3_3:66148088-66148107 | None:intergenic | 35.0% | |
| !!! | GTTGTTGTTTTGTCATTCAG+GGG | - | chr3_3:66148473-66148492 | Msa0465700:intron | 35.0% |
| ATACATATCTGATGAGCAGT+GGG | - | chr3_3:66148532-66148551 | Msa0465700:CDS | 35.0% | |
| !! | TAACTATCACAGCTTTGAAG+GGG | + | chr3_3:66148570-66148589 | None:intergenic | 35.0% |
| ! | GTTAACTATCACAGCTTTGA+AGG | + | chr3_3:66148572-66148591 | None:intergenic | 35.0% |
| TCAGTGGAGGGATTGATTAT+TGG | + | chr3_3:66144827-66144846 | None:intergenic | 40.0% | |
| ! | CCTACGATATTTTCAGTGGA+GGG | + | chr3_3:66144839-66144858 | None:intergenic | 40.0% |
| ! | ACCTACGATATTTTCAGTGG+AGG | + | chr3_3:66144840-66144859 | None:intergenic | 40.0% |
| ! | CGTACCTACGATATTTTCAG+TGG | + | chr3_3:66144843-66144862 | None:intergenic | 40.0% |
| GGTACGTACCTTAATGTTTC+TGG | - | chr3_3:66144857-66144876 | Msa0465700:CDS | 40.0% | |
| TGAATGGTTGACACAAATGC+AGG | - | chr3_3:66144942-66144961 | Msa0465700:intron | 40.0% | |
| GAATGGTTGACACAAATGCA+GGG | - | chr3_3:66144943-66144962 | Msa0465700:intron | 40.0% | |
| AATGGTTGACACAAATGCAG+GGG | - | chr3_3:66144944-66144963 | Msa0465700:intron | 40.0% | |
| ! | TTTTAGCAGCATCAACAGCA+AGG | + | chr3_3:66145001-66145020 | None:intergenic | 40.0% |
| AGAGCCATTTCCAGAAACAA+AGG | - | chr3_3:66145020-66145039 | Msa0465700:CDS | 40.0% | |
| ! | CCAATCTCTACCTTTGTTTC+TGG | + | chr3_3:66145033-66145052 | None:intergenic | 40.0% |
| CCAGAAACAAAGGTAGAGAT+TGG | - | chr3_3:66145030-66145049 | Msa0465700:CDS | 40.0% | |
| TGTATGTCTTGAGACCTGAT+TGG | - | chr3_3:66145404-66145423 | Msa0465700:CDS | 40.0% | |
| AATAGATTGTGGAAAGCCAC+TGG | - | chr3_3:66145493-66145512 | Msa0465700:CDS | 40.0% | |
| CTATATGATCAAACCACAGC+AGG | + | chr3_3:66145609-66145628 | None:intergenic | 40.0% | |
| CTGCTGTGGTTTGATCATAT+AGG | - | chr3_3:66145607-66145626 | Msa0465700:intron | 40.0% | |
| !!! | GGTTGTTTTGAGTACTATGC+TGG | - | chr3_3:66145641-66145660 | Msa0465700:CDS | 40.0% |
| !!! | TGGCTTTTGAAGGTATCCAT+AGG | + | chr3_3:66145713-66145732 | None:intergenic | 40.0% |
| ! | CTTCAGAACATGGCTTTTGA+AGG | + | chr3_3:66145723-66145742 | None:intergenic | 40.0% |
| CTTCAAAAGCCATGTTCTGA+AGG | - | chr3_3:66145721-66145740 | Msa0465700:intron | 40.0% | |
| TGCTTTGATGAGCTATTTGG+TGG | - | chr3_3:66145835-66145854 | Msa0465700:intron | 40.0% | |
| TACACAGATGCCAATTCAGA+CGG | + | chr3_3:66145972-66145991 | None:intergenic | 40.0% | |
| !!! | TTTTAGGACCTGTTTGGAGT+TGG | - | chr3_3:66146065-66146084 | Msa0465700:intron | 40.0% |
| ! | TTTAGGACCTGTTTGGAGTT+GGG | - | chr3_3:66146066-66146085 | Msa0465700:intron | 40.0% |
| GGCGAAATATGCAAAGAAGT+TGG | - | chr3_3:66146087-66146106 | Msa0465700:intron | 40.0% | |
| AACCTTATCAACATCGGGAT+GGG | + | chr3_3:66146178-66146197 | None:intergenic | 40.0% | |
| AAACCTTATCAACATCGGGA+TGG | + | chr3_3:66146179-66146198 | None:intergenic | 40.0% | |
| CTATCGAATAATGCGCACAA+TGG | + | chr3_3:66146326-66146345 | None:intergenic | 40.0% | |
| TGAGGATGTTGACCTTGATA+AGG | - | chr3_3:66146539-66146558 | Msa0465700:intron | 40.0% | |
| GAGGATGTTGACCTTGATAA+GGG | - | chr3_3:66146540-66146559 | Msa0465700:intron | 40.0% | |
| ATGTTGACCTTGATAAGGGT+TGG | - | chr3_3:66146544-66146563 | Msa0465700:intron | 40.0% | |
| ! | CGGCATATGAGCAAATGTTT+TGG | + | chr3_3:66146680-66146699 | None:intergenic | 40.0% |
| TTTGGCTGCTTCTTTACGAA+TGG | - | chr3_3:66146754-66146773 | Msa0465700:intron | 40.0% | |
| TCTACCAGTCTAAGGAAATC+TGG | + | chr3_3:66146924-66146943 | None:intergenic | 40.0% | |
| ATTTCGGATCCATTGGAAGA+AGG | - | chr3_3:66147093-66147112 | Msa0465700:intron | 40.0% | |
| TGGTAAGTTAAGCACGTATC+TGG | + | chr3_3:66147186-66147205 | None:intergenic | 40.0% | |
| ATTGGTGGAGAGATTGAAAG+CGG | - | chr3_3:66147232-66147251 | Msa0465700:CDS | 40.0% | |
| CGAAAAATCTACTGCTAGCA+TGG | - | chr3_3:66147421-66147440 | Msa0465700:CDS | 40.0% | |
| TCAGAAAGACAGCCAAATCA+TGG | + | chr3_3:66147586-66147605 | None:intergenic | 40.0% | |
| !! | GAAGGTGCAACAATTTTGAC+TGG | - | chr3_3:66147738-66147757 | Msa0465700:CDS | 40.0% |
| !!! | GTGCAACAATTTTGACTGGT+GGG | - | chr3_3:66147742-66147761 | Msa0465700:intron | 40.0% |
| ! | GAGGGTATAATCATACCTCT+GGG | + | chr3_3:66147773-66147792 | None:intergenic | 40.0% |
| TGACTACCTCGATGCAAATT+TGG | - | chr3_3:66147910-66147929 | Msa0465700:CDS | 40.0% | |
| TTCTCTCCAAATTTGCATCG+AGG | + | chr3_3:66147919-66147938 | None:intergenic | 40.0% | |
| TAGATCGATTGCTTCTTCCT+CGG | + | chr3_3:66147982-66148001 | None:intergenic | 40.0% | |
| GTATTTCACAGCTATGGCTT+GGG | - | chr3_3:66148096-66148115 | Msa0465700:intron | 40.0% | |
| TATTTCACAGCTATGGCTTG+GGG | - | chr3_3:66148097-66148116 | Msa0465700:intron | 40.0% | |
| ! | ATCTAAGGTGAGAATAGTCC+AGG | - | chr3_3:66148161-66148180 | Msa0465700:intron | 40.0% |
| CTCTTCAAGCTGGAATTGTA+TGG | - | chr3_3:66148269-66148288 | Msa0465700:intron | 40.0% | |
| AAGCTTCATTCAAGCTCCAT+GGG | - | chr3_3:66148309-66148328 | Msa0465700:CDS | 40.0% | |
| GATACATATCTGATGAGCAG+TGG | - | chr3_3:66148531-66148550 | Msa0465700:CDS | 40.0% | |
| TACATATCTGATGAGCAGTG+GGG | - | chr3_3:66148533-66148552 | Msa0465700:CDS | 40.0% | |
| CCCTCCACTGAAAATATCGT+AGG | - | chr3_3:66144836-66144855 | Msa0465700:CDS | 45.0% | |
| GGATATACCAGCTGCTACTA+AGG | - | chr3_3:66144965-66144984 | Msa0465700:intron | 45.0% | |
| ACATCTTCCTTAGTAGCAGC+TGG | + | chr3_3:66144975-66144994 | None:intergenic | 45.0% | |
| TCTTCGAGCAATTGCTGCAA+AGG | - | chr3_3:66145085-66145104 | Msa0465700:CDS | 45.0% | |
| AAGGAAAAAGGCAGCCAATC+AGG | + | chr3_3:66145421-66145440 | None:intergenic | 45.0% | |
| AGGGTTGGATGCAAAGCAAA+AGG | - | chr3_3:66145673-66145692 | Msa0465700:intron | 45.0% | |
| GTATCCATAGGAAGGGATAC+AGG | + | chr3_3:66145701-66145720 | None:intergenic | 45.0% | |
| CAATAGGCTCCTTCAGAACA+TGG | + | chr3_3:66145733-66145752 | None:intergenic | 45.0% | |
| !! | CATGTTCTGAAGGAGCCTAT+TGG | - | chr3_3:66145731-66145750 | Msa0465700:intron | 45.0% |
| ATCCTCTCTTAATGGCGACT+TGG | - | chr3_3:66145901-66145920 | Msa0465700:intron | 45.0% | |
| TTCCAAGTCGCCATTAAGAG+AGG | + | chr3_3:66145906-66145925 | None:intergenic | 45.0% | |
| TATTTCGCCCAACTCCAAAC+AGG | + | chr3_3:66146076-66146095 | None:intergenic | 45.0% | |
| !! | CCAAAAAAGCACCAGCTTCA+TGG | + | chr3_3:66146152-66146171 | None:intergenic | 45.0% |
| !!! | CCATGAAGCTGGTGCTTTTT+TGG | - | chr3_3:66146149-66146168 | Msa0465700:intron | 45.0% |
| ATCCCATCCCGATGTTGATA+AGG | - | chr3_3:66146173-66146192 | Msa0465700:intron | 45.0% | |
| GAGCAAGATTATGACAGCTG+CGG | - | chr3_3:66146375-66146394 | Msa0465700:intron | 45.0% | |
| !!! | GAGCCCGATAGTTGTTTTTG+AGG | - | chr3_3:66146521-66146540 | Msa0465700:intron | 45.0% |
| ATCCGTAACCTATGGCGTAA+TGG | - | chr3_3:66146648-66146667 | Msa0465700:intron | 45.0% | |
| CACCATTACGCCATAGGTTA+CGG | + | chr3_3:66146653-66146672 | None:intergenic | 45.0% | |
| GTTGCTGAATGGACCATCTT+TGG | - | chr3_3:66146736-66146755 | Msa0465700:intron | 45.0% | |
| CGTAAAGAAGCAGCCAAAGA+TGG | + | chr3_3:66146752-66146771 | None:intergenic | 45.0% | |
| ATCCATTGGAAGAAGGTTGC+AGG | - | chr3_3:66147100-66147119 | Msa0465700:intron | 45.0% | |
| CCTGTGCTTCACTGACAATA+GGG | + | chr3_3:66147131-66147150 | None:intergenic | 45.0% | |
| ACCTGTGCTTCACTGACAAT+AGG | + | chr3_3:66147132-66147151 | None:intergenic | 45.0% | |
| ACTACACACTGCATGCAACT+TGG | + | chr3_3:66147541-66147560 | None:intergenic | 45.0% | |
| ATCTCAACGGCTAAGAGTGA+AGG | - | chr3_3:66147720-66147739 | Msa0465700:CDS | 45.0% | |
| !!! | GGTGCAACAATTTTGACTGG+TGG | - | chr3_3:66147741-66147760 | Msa0465700:intron | 45.0% |
| ! | CGAGGGTATAATCATACCTC+TGG | + | chr3_3:66147774-66147793 | None:intergenic | 45.0% |
| TTGCATCGAGGTAGTCACAT+CGG | + | chr3_3:66147907-66147926 | None:intergenic | 45.0% | |
| GGTATTTCACAGCTATGGCT+TGG | - | chr3_3:66148095-66148114 | Msa0465700:intron | 45.0% | |
| AAGATGTGAGCGCGTATCTA+AGG | - | chr3_3:66148146-66148165 | Msa0465700:intron | 45.0% | |
| CATGGAGCTTGAATGAAGCT+TGG | + | chr3_3:66148310-66148329 | None:intergenic | 45.0% | |
| CAAGCTTCATTCAAGCTCCA+TGG | - | chr3_3:66148308-66148327 | Msa0465700:CDS | 45.0% | |
| AGCTTCATTCAAGCTCCATG+GGG | - | chr3_3:66148310-66148329 | Msa0465700:CDS | 45.0% | |
| ! | GGCATTAAACGTAGCGGTTT+TGG | - | chr3_3:66148334-66148353 | Msa0465700:CDS | 45.0% |
| TTGGTCGCGAATTAGGAGAA+TGG | - | chr3_3:66148353-66148372 | Msa0465700:CDS | 45.0% | |
| ! | CTGAAGTCTGGCATCGAATA+AGG | - | chr3_3:66148619-66148638 | Msa0465700:CDS | 45.0% |
| GCGTGACAGAGAGGAGAAAA+TGG | - | chr3_3:66144730-66144749 | Msa0465700:three_prime_UTR | 50.0% | |
| ! | AGAGATTGGTCCACTGCTTC+TGG | - | chr3_3:66145044-66145063 | Msa0465700:CDS | 50.0% |
| ACGAACAGAACCAGAAGCAG+TGG | + | chr3_3:66145057-66145076 | None:intergenic | 50.0% | |
| !! | TACTATGCTGGGCTTGCTGA+AGG | - | chr3_3:66145653-66145672 | Msa0465700:CDS | 50.0% |
| !! | ACTATGCTGGGCTTGCTGAA+GGG | - | chr3_3:66145654-66145673 | Msa0465700:CDS | 50.0% |
| !! | AAAGAAGTTGGCCTTCCTCC+TGG | - | chr3_3:66146099-66146118 | Msa0465700:intron | 50.0% |
| ACCAGCTTCATGGCCTAATC+CGG | + | chr3_3:66146142-66146161 | None:intergenic | 50.0% | |
| AGTTGCAGAGCTACCGGTAA+AGG | + | chr3_3:66146353-66146372 | None:intergenic | 50.0% | |
| ! | TTTACCGGTAGCTCTGCAAC+TGG | - | chr3_3:66146352-66146371 | Msa0465700:intron | 50.0% |
| ! | TTACCGGTAGCTCTGCAACT+GGG | - | chr3_3:66146353-66146372 | Msa0465700:intron | 50.0% |
| CAGCCTGTTTCACTAGAGCT+TGG | - | chr3_3:66146492-66146511 | Msa0465700:intron | 50.0% | |
| ! | CCACCAAGCTCTAGTGAAAC+AGG | + | chr3_3:66146498-66146517 | None:intergenic | 50.0% |
| CCTGTTTCACTAGAGCTTGG+TGG | - | chr3_3:66146495-66146514 | Msa0465700:intron | 50.0% | |
| AGGCACACCAACCCTTATCA+AGG | + | chr3_3:66146554-66146573 | None:intergenic | 50.0% | |
| GGATCACACCATTACGCCAT+AGG | + | chr3_3:66146659-66146678 | None:intergenic | 50.0% | |
| GGGTCCAGATTTCCTTAGAC+TGG | - | chr3_3:66146917-66146936 | Msa0465700:intron | 50.0% | |
| AGCCTGCAACCTTCTTCCAA+TGG | + | chr3_3:66147105-66147124 | None:intergenic | 50.0% | |
| TTGGAAGAAGGTTGCAGGCT+AGG | - | chr3_3:66147105-66147124 | Msa0465700:intron | 50.0% | |
| CCCTATTGTCAGTGAAGCAC+AGG | - | chr3_3:66147128-66147147 | Msa0465700:intron | 50.0% | |
| TACCCTCGAATACGTGTGCT+CGG | - | chr3_3:66147786-66147805 | Msa0465700:intron | 50.0% | |
| AACCGAGCACACGTATTCGA+GGG | + | chr3_3:66147791-66147810 | None:intergenic | 50.0% | |
| ! | GTCACATCGGTTACGATGGT+TGG | + | chr3_3:66147894-66147913 | None:intergenic | 50.0% |
| ! | GGTAGTCACATCGGTTACGA+TGG | + | chr3_3:66147898-66147917 | None:intergenic | 50.0% |
| ATTCTGCAGGCTCTTCAAGC+TGG | - | chr3_3:66148259-66148278 | Msa0465700:intron | 50.0% | |
| TTCATTCAAGCTCCATGGGG+AGG | - | chr3_3:66148313-66148332 | Msa0465700:CDS | 50.0% | |
| CTACGTTTAATGCCTCCCCA+TGG | + | chr3_3:66148328-66148347 | None:intergenic | 50.0% | |
| !! | TGGGGAGGCATTAAACGTAG+CGG | - | chr3_3:66148328-66148347 | Msa0465700:CDS | 50.0% |
| !! | AGCGGTTTTGGTCGCGAATT+AGG | - | chr3_3:66148346-66148365 | Msa0465700:CDS | 50.0% |
| GCATCGAATAAGGTGCGATG+TGG | - | chr3_3:66148629-66148648 | Msa0465700:exon | 50.0% | |
| ! | GCTAAGAGTGCGTGACAGAG+AGG | - | chr3_3:66144721-66144740 | Msa0465700:three_prime_UTR | 55.0% |
| !! | GCTTCTGGTTCTGTTCGTGC+TGG | - | chr3_3:66145059-66145078 | Msa0465700:CDS | 55.0% |
| ! | GCCACTGGATGAAGCACTAG+CGG | - | chr3_3:66145508-66145527 | Msa0465700:intron | 55.0% |
| TCCGCTAGTGCTTCATCCAG+TGG | + | chr3_3:66145512-66145531 | None:intergenic | 55.0% | |
| ! | GGATGAAGCACTAGCGGATC+TGG | - | chr3_3:66145514-66145533 | Msa0465700:intron | 55.0% |
| TGCTTACTTGGACCCTGCTG+TGG | - | chr3_3:66145593-66145612 | Msa0465700:intron | 55.0% | |
| GGCTCCTGTATCCCTTCCTA+TGG | - | chr3_3:66145694-66145713 | Msa0465700:intron | 55.0% | |
| ! | ACCGGATTAGGCCATGAAGC+TGG | - | chr3_3:66146138-66146157 | Msa0465700:intron | 55.0% |
| AGCTGCGGCACAGCTAATCA+AGG | - | chr3_3:66146390-66146409 | Msa0465700:intron | 55.0% | |
| GAACCGAGCACACGTATTCG+AGG | + | chr3_3:66147792-66147811 | None:intergenic | 55.0% | |
| TATCTGATGAGCAGTGGGGC+TGG | - | chr3_3:66148537-66148556 | Msa0465700:CDS | 55.0% | |
| !! | TGCTGGGCTTGCTGAAGGGT+TGG | - | chr3_3:66145658-66145677 | Msa0465700:CDS | 60.0% |
| ! | ATCGCTCCAGCTCTAGCTGC+TGG | - | chr3_3:66145927-66145946 | Msa0465700:intron | 60.0% |
| GCACAACCAGCAGCTAGAGC+TGG | + | chr3_3:66145936-66145955 | None:intergenic | 60.0% | |
| GCTCCCAGTTGCAGAGCTAC+CGG | + | chr3_3:66146359-66146378 | None:intergenic | 60.0% | |
| ! | GACTGGTGGGCGTCGCCCAG+AGG | - | chr3_3:66147755-66147774 | Msa0465700:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 66144606 | 66148782 | 66144606 | ID=Msa0465700;Name=Msa0465700 |
| chr3_3 | mRNA | 66144606 | 66148782 | 66144606 | ID=Msa0465700-mRNA-1;Parent=Msa0465700;Name=Msa0465700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=143|1|1|1|1|1|15|199|503 |
| chr3_3 | exon | 66144606 | 66144895 | 66144606 | ID=Msa0465700-mRNA-1:exon:14929;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66145014 | 66145120 | 66145014 | ID=Msa0465700-mRNA-1:exon:14928;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66145221 | 66145281 | 66145221 | ID=Msa0465700-mRNA-1:exon:14927;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66145373 | 66145524 | 66145373 | ID=Msa0465700-mRNA-1:exon:14926;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66145612 | 66145689 | 66145612 | ID=Msa0465700-mRNA-1:exon:14925;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66146239 | 66146352 | 66146239 | ID=Msa0465700-mRNA-1:exon:14924;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66146575 | 66146651 | 66146575 | ID=Msa0465700-mRNA-1:exon:14923;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66146827 | 66146893 | 66146827 | ID=Msa0465700-mRNA-1:exon:14922;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66146977 | 66147042 | 66146977 | ID=Msa0465700-mRNA-1:exon:14921;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66147194 | 66147317 | 66147194 | ID=Msa0465700-mRNA-1:exon:14920;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66147400 | 66147492 | 66147400 | ID=Msa0465700-mRNA-1:exon:14919;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66147611 | 66147759 | 66147611 | ID=Msa0465700-mRNA-1:exon:14918;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66147853 | 66147933 | 66147853 | ID=Msa0465700-mRNA-1:exon:14917;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66148282 | 66148424 | 66148282 | ID=Msa0465700-mRNA-1:exon:14916;Parent=Msa0465700-mRNA-1 |
| chr3_3 | exon | 66148531 | 66148782 | 66148531 | ID=Msa0465700-mRNA-1:exon:14915;Parent=Msa0465700-mRNA-1 |
| chr3_3 | five_prime_UTR | 66148640 | 66148782 | 66148640 | ID=Msa0465700-mRNA-1:five_prime_utr;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66148531 | 66148639 | 66148531 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66148282 | 66148424 | 66148282 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66147853 | 66147933 | 66147853 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66147611 | 66147759 | 66147611 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66147400 | 66147492 | 66147400 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66147194 | 66147317 | 66147194 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66146977 | 66147042 | 66146977 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66146827 | 66146893 | 66146827 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66146575 | 66146651 | 66146575 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66146239 | 66146352 | 66146239 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66145612 | 66145689 | 66145612 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66145373 | 66145524 | 66145373 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66145221 | 66145281 | 66145221 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66145014 | 66145120 | 66145014 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | CDS | 66144805 | 66144895 | 66144805 | ID=Msa0465700-mRNA-1:cds;Parent=Msa0465700-mRNA-1 |
| chr3_3 | three_prime_UTR | 66144606 | 66144804 | 66144606 | ID=Msa0465700-mRNA-1:three_prime_utr;Parent=Msa0465700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
