Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251630 | XP_024631836.2 | 96.992 | 399 | 12 | 0 | 1 | 399 | 1 | 399 | 0.0 | 815 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251630 | A0A396JPB9 | 75.802 | 405 | 91 | 1 | 1 | 398 | 1 | 405 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0198900 | Msa0251630 | 0.946107 | 8.653536e-105 | -8.615850e-47 |
| Msa0251630 | Msa0490150 | 0.913106 | 9.039789e-84 | -8.615850e-47 |
| Msa0251630 | Msa0767730 | 0.872229 | 3.732639e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251630 | MtrunA17_Chr1g0172731 | 75.802 | 405 | 91 | 1 | 1 | 398 | 1 | 405 | 0.0 | 664 |
| Msa0251630 | MtrunA17_Chr1g0190171 | 75.062 | 405 | 94 | 1 | 1 | 398 | 1 | 405 | 0.0 | 659 |
| Msa0251630 | MtrunA17_Chr2g0321401 | 75.000 | 252 | 57 | 1 | 1 | 246 | 1 | 252 | 1.77e-143 | 408 |
| Msa0251630 | MtrunA17_Chr8g0334561 | 73.518 | 253 | 60 | 1 | 1 | 246 | 1 | 253 | 2.00e-140 | 400 |
| Msa0251630 | MtrunA17_Chr2g0285471 | 80.435 | 184 | 36 | 0 | 63 | 246 | 1 | 184 | 2.40e-110 | 322 |
| Msa0251630 | MtrunA17_Chr1g0182341 | 42.697 | 356 | 160 | 6 | 3 | 350 | 15 | 334 | 1.01e-90 | 278 |
| Msa0251630 | MtrunA17_Chr6g0477141 | 42.638 | 326 | 182 | 3 | 15 | 338 | 96 | 418 | 4.08e-84 | 265 |
| Msa0251630 | MtrunA17_Chr6g0478531 | 40.517 | 348 | 197 | 6 | 35 | 380 | 15 | 354 | 4.25e-84 | 261 |
| Msa0251630 | MtrunA17_Chr7g0226311 | 42.857 | 322 | 173 | 6 | 59 | 377 | 9 | 322 | 6.88e-75 | 236 |
| Msa0251630 | MtrunA17_Chr8g0391981 | 37.808 | 365 | 205 | 7 | 18 | 378 | 36 | 382 | 7.93e-71 | 228 |
| Msa0251630 | MtrunA17_Chr1g0207391 | 40.453 | 309 | 161 | 8 | 45 | 343 | 74 | 369 | 3.45e-68 | 221 |
| Msa0251630 | MtrunA17_Chr7g0267201 | 48.125 | 160 | 75 | 2 | 66 | 217 | 1 | 160 | 4.81e-47 | 159 |
| Msa0251630 | MtrunA17_Chr3g0140031 | 66.071 | 112 | 31 | 1 | 1 | 105 | 1 | 112 | 4.14e-46 | 154 |
| Msa0251630 | MtrunA17_Chr5g0420851 | 89.655 | 58 | 6 | 0 | 342 | 399 | 1 | 58 | 1.39e-28 | 106 |
| Msa0251630 | MtrunA17_Chr1g0211031 | 61.628 | 86 | 31 | 1 | 314 | 399 | 1 | 84 | 1.17e-27 | 104 |
| Msa0251630 | MtrunA17_Chr8g0370251 | 61.628 | 86 | 31 | 1 | 314 | 399 | 1 | 84 | 1.17e-27 | 104 |
| Msa0251630 | MtrunA17_Chr5g0427241 | 60.000 | 85 | 32 | 1 | 314 | 398 | 1 | 83 | 9.98e-27 | 102 |
| Msa0251630 | MtrunA17_Chr2g0295621 | 60.000 | 85 | 32 | 1 | 314 | 398 | 1 | 83 | 1.05e-26 | 102 |
| Msa0251630 | MtrunA17_Chr1g0154421 | 36.242 | 149 | 93 | 2 | 14 | 161 | 2 | 149 | 7.48e-20 | 85.5 |
| Msa0251630 | MtrunA17_Chr4g0018411 | 36.364 | 121 | 71 | 3 | 246 | 364 | 10 | 126 | 2.77e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251630 | AT5G41980.1 | 37.681 | 345 | 184 | 7 | 33 | 371 | 15 | 334 | 1.87e-71 | 229 |
| Msa0251630 | AT1G43722.1 | 35.897 | 312 | 186 | 5 | 4 | 308 | 16 | 320 | 1.21e-59 | 197 |
| Msa0251630 | AT5G28730.1 | 34.426 | 244 | 126 | 6 | 33 | 273 | 2 | 214 | 2.62e-39 | 142 |
| Msa0251630 | AT3G30525.1 | 36.686 | 169 | 101 | 2 | 172 | 335 | 1 | 168 | 7.02e-30 | 114 |
| Msa0251630 | AT5G35695.1 | 42.553 | 141 | 63 | 4 | 210 | 346 | 25 | 151 | 4.30e-28 | 110 |
| Msa0251630 | AT5G28950.1 | 44.318 | 88 | 49 | 0 | 154 | 241 | 11 | 98 | 2.25e-20 | 87.4 |
| Msa0251630 | AT4G10890.3 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.55e-16 | 80.5 |
| Msa0251630 | AT4G10890.1 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.55e-16 | 80.5 |
| Msa0251630 | AT4G10890.2 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.55e-16 | 80.5 |
Find 75 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTATCACTCAAGTTTA+AGG | 0.112859 | 2_2:-41567440 | Msa0251630:CDS |
| AGTGACCAAACTAGATTTAT+TGG | 0.193012 | 2_2:-41567822 | Msa0251630:CDS |
| TTATCGTAGACCAGTTAATT+TGG | 0.251482 | 2_2:-41567220 | Msa0251630:CDS |
| TTCTTCCAATAAATCTAGTT+TGG | 0.301437 | 2_2:+41567817 | None:intergenic |
| TGAGATGAATCCAAATTAAC+TGG | 0.308066 | 2_2:+41567210 | None:intergenic |
| CTCATTGCAAAATGAACTAT+TGG | 0.311324 | 2_2:-41568382 | None:intergenic |
| CCATGGGAACGCCGAAAATC+AGG | 0.316313 | 2_2:+41567489 | None:intergenic |
| CCCCATCGGTGTTGGATAAC+CGG | 0.331584 | 2_2:+41567548 | None:intergenic |
| TGTGTCTTAATTGTGAATTT+AGG | 0.331819 | 2_2:+41567357 | None:intergenic |
| TTCAAAGTGATCCACGATAT+TGG | 0.339686 | 2_2:-41567908 | Msa0251630:CDS |
| TGCACAATAGAAAGAACTTT+TGG | 0.340416 | 2_2:-41567417 | Msa0251630:CDS |
| TTCTTTAGTGGCTGCGCTGA+TGG | 0.369897 | 2_2:-41568318 | Msa0251630:CDS |
| TATTAGAAGGAATGCTGATA+TGG | 0.386332 | 2_2:-41567295 | Msa0251630:CDS |
| GAGATCAAATTATAGAGTTC+AGG | 0.388110 | 2_2:-41567134 | Msa0251630:CDS |
| AACTAGATTTATTGGAAGAA+AGG | 0.401366 | 2_2:-41567814 | Msa0251630:CDS |
| CTATACATAACTTTATTAGA+AGG | 0.401801 | 2_2:-41567308 | Msa0251630:CDS |
| GCTGCGCTGATGGGTGAGTA+TGG | 0.402936 | 2_2:-41568308 | Msa0251630:CDS |
| TGTAGAACTAGTGAGCTAAC+AGG | 0.402946 | 2_2:-41568260 | Msa0251630:CDS |
| TTCTACCCCTATGTGATTAG+TGG | 0.407094 | 2_2:+41568118 | None:intergenic |
| TGCACTAAATTAGTTGATCA+TGG | 0.412015 | 2_2:-41568149 | Msa0251630:CDS |
| CCAACACCGATGGGGTATCT+TGG | 0.413955 | 2_2:-41567540 | Msa0251630:CDS |
| ACTAGATTTATTGGAAGAAA+GGG | 0.418213 | 2_2:-41567813 | Msa0251630:CDS |
| GCAATGTTCTTACTTGTTGT+TGG | 0.423911 | 2_2:-41568086 | Msa0251630:CDS |
| TACGATAATCATCATGATCA+AGG | 0.435864 | 2_2:+41567235 | None:intergenic |
| TTAATACCTGGAGGAGGATG+TGG | 0.473645 | 2_2:+41567657 | None:intergenic |
| GTGAGCTAACAGGGCATGCA+TGG | 0.475764 | 2_2:-41568250 | Msa0251630:CDS |
| CCAAGATACCCCATCGGTGT+TGG | 0.475954 | 2_2:+41567540 | None:intergenic |
| TTCTTACTTGTTGTTGGACA+TGG | 0.479104 | 2_2:-41568080 | Msa0251630:CDS |
| TTGAGGCTTTATATATTCGA+TGG | 0.486174 | 2_2:+41567962 | None:intergenic |
| TTTAGGTATGTATTATTTGG+TGG | 0.486635 | 2_2:-41567574 | Msa0251630:intron |
| ATGTATTATTTGGTGGATGC+CGG | 0.486645 | 2_2:-41567567 | Msa0251630:CDS |
| TCTTTAGTGGCTGCGCTGAT+GGG | 0.486854 | 2_2:-41568317 | Msa0251630:CDS |
| CGTCGATTTCAATCGGTATG+AGG | 0.488598 | 2_2:-41567271 | Msa0251630:CDS |
| ATGTAATGGCTGTATGTGAT+TGG | 0.504425 | 2_2:-41567776 | Msa0251630:CDS |
| GCCGGTTATCCAACACCGAT+GGG | 0.518380 | 2_2:-41567549 | Msa0251630:CDS |
| TTGTTATGAGATGTTTCGAA+TGG | 0.520234 | 2_2:-41568195 | Msa0251630:CDS |
| AATAAATCTAGTTTGGTCAC+TGG | 0.523191 | 2_2:+41567824 | None:intergenic |
| TGATAACGTTCACATCTGTA+TGG | 0.526253 | 2_2:+41567516 | None:intergenic |
| TAAAGCCCACTAATCACATA+GGG | 0.528574 | 2_2:-41568124 | Msa0251630:CDS |
| TGAACTCTATAATTTGATCT+CGG | 0.529222 | 2_2:+41567136 | None:intergenic |
| TCTACCCCTATGTGATTAGT+GGG | 0.529840 | 2_2:+41568119 | None:intergenic |
| TGAAGTCGTTGTTGCAACAA+TGG | 0.546744 | 2_2:-41567331 | Msa0251630:CDS |
| GATTTGCATTTGTGAGAGCA+TGG | 0.547923 | 2_2:+41567688 | None:intergenic |
| AACATCTCATAACAACGAGT+TGG | 0.551166 | 2_2:+41568203 | None:intergenic |
| TGCCGGTTATCCAACACCGA+TGG | 0.556028 | 2_2:-41567550 | Msa0251630:CDS |
| TCACATAGGGGTAGAAGAGA+TGG | 0.556124 | 2_2:-41568111 | Msa0251630:CDS |
| CATGGGAACGCCGAAAATCA+GGG | 0.556357 | 2_2:+41567490 | None:intergenic |
| ATATGGACGTCGATTTCAAT+CGG | 0.561835 | 2_2:-41567278 | Msa0251630:CDS |
| TCACAGTTTCACCTGAGTGT+TGG | 0.562860 | 2_2:+41568027 | None:intergenic |
| GATGAATCATGTTCGAAACT+CGG | 0.563052 | 2_2:-41567160 | Msa0251630:CDS |
| ACTTGTTGTTGGACATGGAG+TGG | 0.572106 | 2_2:-41568075 | Msa0251630:CDS |
| CTTGTTGTTGGACATGGAGT+GGG | 0.572884 | 2_2:-41568074 | Msa0251630:CDS |
| CAAGAAAGGTTCCAACACTC+AGG | 0.576876 | 2_2:-41568038 | Msa0251630:CDS |
| ATATCCGACACAAAATGTAA+TGG | 0.578336 | 2_2:-41567790 | Msa0251630:CDS |
| GTAACAGAATGATTCAAGAA+AGG | 0.580146 | 2_2:-41568052 | Msa0251630:CDS |
| TTAAAGCCCACTAATCACAT+AGG | 0.582939 | 2_2:-41568125 | Msa0251630:CDS |
| GTTAGCTCACTAGTTCTACA+TGG | 0.598706 | 2_2:+41568263 | None:intergenic |
| ATAATATTAATACCTGGAGG+AGG | 0.608585 | 2_2:+41567651 | None:intergenic |
| TGGGTGAAAGAAGTGTTACA+AGG | 0.613940 | 2_2:-41568230 | Msa0251630:CDS |
| GTAGAACTAGTGAGCTAACA+GGG | 0.616141 | 2_2:-41568259 | Msa0251630:CDS |
| TGAGCTAACAGGGCATGCAT+GGG | 0.618880 | 2_2:-41568249 | Msa0251630:CDS |
| GTCACTGGCACTAACCACAC+AGG | 0.619956 | 2_2:+41567839 | None:intergenic |
| ACGATAATCATCATGATCAA+GGG | 0.621055 | 2_2:+41567236 | None:intergenic |
| AACATGATTCATCTCAGATG+AGG | 0.624817 | 2_2:+41567170 | None:intergenic |
| TCACTGAACAAAGGATCTTG+AGG | 0.628315 | 2_2:+41567945 | None:intergenic |
| GCATGACTATCACTGAACAA+AGG | 0.657979 | 2_2:+41567936 | None:intergenic |
| AATGCTATAGGAGCAATCGA+TGG | 0.684778 | 2_2:-41567873 | Msa0251630:CDS |
| TCACTGGCACTAACCACACA+GGG | 0.685550 | 2_2:+41567840 | None:intergenic |
| GGGTGAAAGAAGTGTTACAA+GGG | 0.685898 | 2_2:-41568229 | Msa0251630:CDS |
| CCGGTTATCCAACACCGATG+GGG | 0.699683 | 2_2:-41567548 | Msa0251630:CDS |
| TATGGACCAAGATACCCCAT+CGG | 0.700535 | 2_2:+41567534 | None:intergenic |
| AAAGCCCACTAATCACATAG+GGG | 0.730444 | 2_2:-41568123 | Msa0251630:CDS |
| TGGTACGCATATTCCCTGTG+TGG | 0.730498 | 2_2:-41567853 | Msa0251630:CDS |
| GGGAACGCCGAAAATCAGGG+AGG | 0.802967 | 2_2:+41567493 | None:intergenic |
| TGGGTTTGAAAATAACAACG+AGG | 0.807645 | 2_2:-41567469 | Msa0251630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr2_2:41567902-41567921 | Msa0251630:CDS | 0.0% |
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr2_2:41567902-41567921 | Msa0251630:CDS | 0.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr2_2:41567868-41567887 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr2_2:41567916-41567935 | Msa0251630:CDS | 15.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr2_2:41567868-41567887 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr2_2:41567916-41567935 | Msa0251630:CDS | 15.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr2_2:41567851-41567870 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr2_2:41568053-41568072 | Msa0251630:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr2_2:41568185-41568204 | Msa0251630:CDS | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr2_2:41567851-41567870 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr2_2:41568053-41568072 | Msa0251630:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr2_2:41568185-41568204 | Msa0251630:CDS | 20.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr2_2:41567329-41567348 | None:intergenic | 25.0% |
| ! | CCTATAGCATTCTTAAAAAA+TGG | + | chr2_2:41567611-41567630 | None:intergenic | 25.0% |
| !!! | CCATTTTTTAAGAATGCTAT+AGG | - | chr2_2:41567608-41567627 | Msa0251630:intron | 25.0% |
| ! | TTCTTCCAATAAATCTAGTT+TGG | + | chr2_2:41567679-41567698 | None:intergenic | 25.0% |
| ! | AACTAGATTTATTGGAAGAA+AGG | - | chr2_2:41567679-41567698 | Msa0251630:CDS | 25.0% |
| ! | ACTAGATTTATTGGAAGAAA+GGG | - | chr2_2:41567680-41567699 | Msa0251630:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr2_2:41567919-41567938 | Msa0251630:CDS | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | + | chr2_2:41568139-41568158 | None:intergenic | 25.0% |
| ! | TGAACTCTATAATTTGATCT+CGG | + | chr2_2:41568360-41568379 | None:intergenic | 25.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr2_2:41567329-41567348 | None:intergenic | 25.0% |
| ! | CCTATAGCATTCTTAAAAAA+TGG | + | chr2_2:41567611-41567630 | None:intergenic | 25.0% |
| !!! | CCATTTTTTAAGAATGCTAT+AGG | - | chr2_2:41567608-41567627 | Msa0251630:intron | 25.0% |
| ! | TTCTTCCAATAAATCTAGTT+TGG | + | chr2_2:41567679-41567698 | None:intergenic | 25.0% |
| ! | AACTAGATTTATTGGAAGAA+AGG | - | chr2_2:41567679-41567698 | Msa0251630:CDS | 25.0% |
| ! | ACTAGATTTATTGGAAGAAA+GGG | - | chr2_2:41567680-41567699 | Msa0251630:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr2_2:41567919-41567938 | Msa0251630:CDS | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | + | chr2_2:41568139-41568158 | None:intergenic | 25.0% |
| ! | TGAACTCTATAATTTGATCT+CGG | + | chr2_2:41568360-41568379 | None:intergenic | 25.0% |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr2_2:41567163-41567182 | Msa0251630:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr2_2:41567298-41567317 | Msa0251630:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr2_2:41567344-41567363 | Msa0251630:CDS | 30.0% | |
| GTAACAGAATGATTCAAGAA+AGG | - | chr2_2:41567441-41567460 | Msa0251630:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr2_2:41567534-41567553 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr2_2:41567599-41567618 | None:intergenic | 30.0% | |
| ! | AATAAATCTAGTTTGGTCAC+TGG | + | chr2_2:41567672-41567691 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | - | chr2_2:41567671-41567690 | Msa0251630:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr2_2:41567703-41567722 | Msa0251630:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr2_2:41567845-41567864 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr2_2:41567848-41567867 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCAT+GGG | + | chr2_2:41568023-41568042 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr2_2:41568076-41568095 | Msa0251630:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr2_2:41568083-41568102 | Msa0251630:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr2_2:41568198-41568217 | Msa0251630:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr2_2:41568260-41568279 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr2_2:41568261-41568280 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr2_2:41568273-41568292 | Msa0251630:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr2_2:41568286-41568305 | None:intergenic | 30.0% | |
| GAGATCAAATTATAGAGTTC+AGG | - | chr2_2:41568359-41568378 | Msa0251630:CDS | 30.0% | |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr2_2:41567163-41567182 | Msa0251630:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr2_2:41567298-41567317 | Msa0251630:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr2_2:41567344-41567363 | Msa0251630:CDS | 30.0% | |
| GTAACAGAATGATTCAAGAA+AGG | - | chr2_2:41567441-41567460 | Msa0251630:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr2_2:41567534-41567553 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr2_2:41567599-41567618 | None:intergenic | 30.0% | |
| ! | AATAAATCTAGTTTGGTCAC+TGG | + | chr2_2:41567672-41567691 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | - | chr2_2:41567671-41567690 | Msa0251630:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr2_2:41567703-41567722 | Msa0251630:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr2_2:41567845-41567864 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr2_2:41567848-41567867 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCAT+GGG | + | chr2_2:41568023-41568042 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr2_2:41568076-41568095 | Msa0251630:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr2_2:41568083-41568102 | Msa0251630:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr2_2:41568198-41568217 | Msa0251630:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr2_2:41568260-41568279 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr2_2:41568261-41568280 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr2_2:41568273-41568292 | Msa0251630:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr2_2:41568286-41568305 | None:intergenic | 30.0% | |
| GAGATCAAATTATAGAGTTC+AGG | - | chr2_2:41568359-41568378 | Msa0251630:CDS | 30.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr2_2:41567293-41567312 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr2_2:41567368-41567387 | Msa0251630:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr2_2:41567369-41567388 | Msa0251630:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr2_2:41567407-41567426 | Msa0251630:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr2_2:41567413-41567432 | Msa0251630:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr2_2:41567585-41567604 | Msa0251630:intron | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | + | chr2_2:41567710-41567729 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | - | chr2_2:41567717-41567736 | Msa0251630:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr2_2:41567746-41567765 | Msa0251630:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr2_2:41567750-41567769 | Msa0251630:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr2_2:41567751-41567770 | Msa0251630:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr2_2:41567926-41567945 | Msa0251630:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr2_2:41567980-41567999 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCA+TGG | + | chr2_2:41568024-41568043 | None:intergenic | 35.0% |
| TGGGTTTGAAAATAACAACG+AGG | - | chr2_2:41568024-41568043 | Msa0251630:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr2_2:41568215-41568234 | Msa0251630:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr2_2:41568326-41568345 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr2_2:41568333-41568352 | Msa0251630:CDS | 35.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr2_2:41567293-41567312 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr2_2:41567368-41567387 | Msa0251630:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr2_2:41567369-41567388 | Msa0251630:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr2_2:41567407-41567426 | Msa0251630:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr2_2:41567413-41567432 | Msa0251630:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr2_2:41567585-41567604 | Msa0251630:intron | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | + | chr2_2:41567710-41567729 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | - | chr2_2:41567717-41567736 | Msa0251630:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr2_2:41567746-41567765 | Msa0251630:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr2_2:41567750-41567769 | Msa0251630:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr2_2:41567751-41567770 | Msa0251630:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr2_2:41567926-41567945 | Msa0251630:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr2_2:41567980-41567999 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCA+TGG | + | chr2_2:41568024-41568043 | None:intergenic | 35.0% |
| TGGGTTTGAAAATAACAACG+AGG | - | chr2_2:41568024-41568043 | Msa0251630:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr2_2:41568215-41568234 | Msa0251630:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr2_2:41568326-41568345 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr2_2:41568333-41568352 | Msa0251630:CDS | 35.0% | |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr2_2:41567233-41567252 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr2_2:41567233-41567252 | Msa0251630:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr2_2:41567234-41567253 | Msa0251630:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr2_2:41567263-41567282 | Msa0251630:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr2_2:41567264-41567283 | Msa0251630:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr2_2:41567370-41567389 | Msa0251630:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr2_2:41567377-41567396 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr2_2:41567378-41567397 | None:intergenic | 40.0% | |
| TCACTGAACAAAGGATCTTG+AGG | + | chr2_2:41567551-41567570 | None:intergenic | 40.0% | |
| GCATGACTATCACTGAACAA+AGG | + | chr2_2:41567560-41567579 | None:intergenic | 40.0% | |
| AATGCTATAGGAGCAATCGA+TGG | - | chr2_2:41567620-41567639 | Msa0251630:intron | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr2_2:41567755-41567774 | Msa0251630:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr2_2:41567786-41567805 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr2_2:41567808-41567827 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr2_2:41567993-41568012 | Msa0251630:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr2_2:41568162-41568181 | Msa0251630:CDS | 40.0% | |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr2_2:41567233-41567252 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr2_2:41567233-41567252 | Msa0251630:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr2_2:41567234-41567253 | Msa0251630:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr2_2:41567263-41567282 | Msa0251630:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr2_2:41567264-41567283 | Msa0251630:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr2_2:41567370-41567389 | Msa0251630:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr2_2:41567377-41567396 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr2_2:41567378-41567397 | None:intergenic | 40.0% | |
| TCACTGAACAAAGGATCTTG+AGG | + | chr2_2:41567551-41567570 | None:intergenic | 40.0% | |
| GCATGACTATCACTGAACAA+AGG | + | chr2_2:41567560-41567579 | None:intergenic | 40.0% | |
| AATGCTATAGGAGCAATCGA+TGG | - | chr2_2:41567620-41567639 | Msa0251630:intron | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr2_2:41567755-41567774 | Msa0251630:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr2_2:41567786-41567805 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr2_2:41567808-41567827 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr2_2:41567993-41568012 | Msa0251630:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr2_2:41568162-41568181 | Msa0251630:CDS | 40.0% | |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr2_2:41567382-41567401 | Msa0251630:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr2_2:41567418-41567437 | Msa0251630:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr2_2:41567419-41567438 | Msa0251630:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr2_2:41567455-41567474 | Msa0251630:CDS | 45.0% | |
| TCACAGTTTCACCTGAGTGT+TGG | + | chr2_2:41567469-41567488 | None:intergenic | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr2_2:41567787-41567806 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr2_2:41567830-41567849 | Msa0251630:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr2_2:41567839-41567858 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr2_2:41567962-41567981 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr2_2:41568222-41568241 | Msa0251630:CDS | 45.0% |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr2_2:41567382-41567401 | Msa0251630:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr2_2:41567418-41567437 | Msa0251630:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr2_2:41567419-41567438 | Msa0251630:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr2_2:41567455-41567474 | Msa0251630:CDS | 45.0% | |
| TCACAGTTTCACCTGAGTGT+TGG | + | chr2_2:41567469-41567488 | None:intergenic | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr2_2:41567787-41567806 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr2_2:41567830-41567849 | Msa0251630:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr2_2:41567839-41567858 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr2_2:41567962-41567981 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr2_2:41568222-41568241 | Msa0251630:CDS | 45.0% |
| TTCTTTAGTGGCTGCGCTGA+TGG | - | chr2_2:41567175-41567194 | Msa0251630:CDS | 50.0% | |
| ! | TCTTTAGTGGCTGCGCTGAT+GGG | - | chr2_2:41567176-41567195 | Msa0251630:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr2_2:41567244-41567263 | Msa0251630:CDS | 50.0% | |
| TGGTACGCATATTCCCTGTG+TGG | - | chr2_2:41567640-41567659 | Msa0251630:intron | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | + | chr2_2:41567656-41567675 | None:intergenic | 50.0% | |
| CATGGGAACGCCGAAAATCA+GGG | + | chr2_2:41568006-41568025 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAT+GGG | - | chr2_2:41568005-41568024 | Msa0251630:CDS | 50.0% |
| TTCTTTAGTGGCTGCGCTGA+TGG | - | chr2_2:41567175-41567194 | Msa0251630:CDS | 50.0% | |
| ! | TCTTTAGTGGCTGCGCTGAT+GGG | - | chr2_2:41567176-41567195 | Msa0251630:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr2_2:41567244-41567263 | Msa0251630:CDS | 50.0% | |
| TGGTACGCATATTCCCTGTG+TGG | - | chr2_2:41567640-41567659 | Msa0251630:intron | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | + | chr2_2:41567656-41567675 | None:intergenic | 50.0% | |
| CATGGGAACGCCGAAAATCA+GGG | + | chr2_2:41568006-41568025 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAT+GGG | - | chr2_2:41568005-41568024 | Msa0251630:CDS | 50.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr2_2:41567243-41567262 | Msa0251630:CDS | 55.0% | |
| GTCACTGGCACTAACCACAC+AGG | + | chr2_2:41567657-41567676 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr2_2:41567943-41567962 | Msa0251630:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr2_2:41567944-41567963 | Msa0251630:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr2_2:41567948-41567967 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr2_2:41567945-41567964 | Msa0251630:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr2_2:41567956-41567975 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr2_2:41567953-41567972 | Msa0251630:CDS | 55.0% |
| CCATGGGAACGCCGAAAATC+AGG | + | chr2_2:41568007-41568026 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+TGG | - | chr2_2:41568004-41568023 | Msa0251630:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr2_2:41567243-41567262 | Msa0251630:CDS | 55.0% | |
| GTCACTGGCACTAACCACAC+AGG | + | chr2_2:41567657-41567676 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr2_2:41567943-41567962 | Msa0251630:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr2_2:41567944-41567963 | Msa0251630:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr2_2:41567948-41567967 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr2_2:41567945-41567964 | Msa0251630:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr2_2:41567956-41567975 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr2_2:41567953-41567972 | Msa0251630:CDS | 55.0% |
| CCATGGGAACGCCGAAAATC+AGG | + | chr2_2:41568007-41568026 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+TGG | - | chr2_2:41568004-41568023 | Msa0251630:CDS | 55.0% |
| ! | GCTGCGCTGATGGGTGAGTA+TGG | - | chr2_2:41567185-41567204 | Msa0251630:CDS | 60.0% |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr2_2:41568003-41568022 | None:intergenic | 60.0% | |
| ! | GCTGCGCTGATGGGTGAGTA+TGG | - | chr2_2:41567185-41567204 | Msa0251630:CDS | 60.0% |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr2_2:41568003-41568022 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 41567122 | 41568393 | 41567122 | ID=Msa0251630;Name=Msa0251630 |
| chr2_2 | mRNA | 41567122 | 41568393 | 41567122 | ID=Msa0251630-mRNA-1;Parent=Msa0251630;Name=Msa0251630-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0|1|1|1|2|0|399 |
| chr2_2 | exon | 41567664 | 41568393 | 41567664 | ID=Msa0251630-mRNA-1:exon:13055;Parent=Msa0251630-mRNA-1 |
| chr2_2 | exon | 41567122 | 41567591 | 41567122 | ID=Msa0251630-mRNA-1:exon:13054;Parent=Msa0251630-mRNA-1 |
| chr2_2 | CDS | 41567664 | 41568393 | 41567664 | ID=Msa0251630-mRNA-1:cds;Parent=Msa0251630-mRNA-1 |
| chr2_2 | CDS | 41567122 | 41567591 | 41567122 | ID=Msa0251630-mRNA-1:cds;Parent=Msa0251630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
