Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198900 | XP_024631836.2 | 96.742 | 399 | 13 | 0 | 1 | 399 | 1 | 399 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198900 | A0A396JPB9 | 75.556 | 405 | 92 | 1 | 1 | 398 | 1 | 405 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0135660 | Msa0198900 | 0.819200 | 1.315700e-52 | -8.615850e-47 |
| Msa0198900 | Msa0198910 | 0.831103 | 2.017975e-55 | -8.615850e-47 |
| Msa0198900 | Msa0251630 | 0.946107 | 8.653536e-105 | -8.615850e-47 |
| Msa0198900 | Msa0251640 | 0.851755 | 7.219728e-61 | -8.615850e-47 |
| Msa0198900 | Msa0490140 | 0.844110 | 9.260286e-59 | -8.615850e-47 |
| Msa0198900 | Msa0490150 | 0.961550 | 7.839620e-120 | -8.615850e-47 |
| Msa0198900 | Msa0514320 | 0.813064 | 3.092115e-51 | -8.615850e-47 |
| Msa0198900 | Msa0645300 | 0.822267 | 2.595310e-53 | -8.615850e-47 |
| Msa0198900 | Msa0767730 | 0.896257 | 4.387461e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198900 | MtrunA17_Chr1g0172731 | 75.556 | 405 | 92 | 1 | 1 | 398 | 1 | 405 | 0.0 | 662 |
| Msa0198900 | MtrunA17_Chr1g0190171 | 74.815 | 405 | 95 | 1 | 1 | 398 | 1 | 405 | 0.0 | 658 |
| Msa0198900 | MtrunA17_Chr2g0321401 | 74.603 | 252 | 58 | 1 | 1 | 246 | 1 | 252 | 7.26e-143 | 407 |
| Msa0198900 | MtrunA17_Chr8g0334561 | 73.518 | 253 | 60 | 1 | 1 | 246 | 1 | 253 | 2.14e-140 | 400 |
| Msa0198900 | MtrunA17_Chr2g0285471 | 79.891 | 184 | 37 | 0 | 63 | 246 | 1 | 184 | 1.02e-109 | 320 |
| Msa0198900 | MtrunA17_Chr1g0182341 | 42.697 | 356 | 160 | 6 | 3 | 350 | 15 | 334 | 1.52e-90 | 278 |
| Msa0198900 | MtrunA17_Chr6g0478531 | 40.517 | 348 | 197 | 6 | 35 | 380 | 15 | 354 | 9.13e-84 | 261 |
| Msa0198900 | MtrunA17_Chr6g0477141 | 42.638 | 326 | 182 | 3 | 15 | 338 | 96 | 418 | 1.05e-83 | 263 |
| Msa0198900 | MtrunA17_Chr7g0226311 | 42.857 | 322 | 173 | 6 | 59 | 377 | 9 | 322 | 1.17e-74 | 236 |
| Msa0198900 | MtrunA17_Chr8g0391981 | 37.808 | 365 | 205 | 7 | 18 | 378 | 36 | 382 | 8.18e-71 | 228 |
| Msa0198900 | MtrunA17_Chr1g0207391 | 40.129 | 309 | 162 | 8 | 45 | 343 | 74 | 369 | 1.36e-67 | 220 |
| Msa0198900 | MtrunA17_Chr7g0267201 | 48.125 | 160 | 75 | 2 | 66 | 217 | 1 | 160 | 6.76e-47 | 158 |
| Msa0198900 | MtrunA17_Chr3g0140031 | 65.179 | 112 | 32 | 1 | 1 | 105 | 1 | 112 | 7.76e-47 | 156 |
| Msa0198900 | MtrunA17_Chr5g0420851 | 89.655 | 58 | 6 | 0 | 342 | 399 | 1 | 58 | 1.42e-28 | 106 |
| Msa0198900 | MtrunA17_Chr1g0211031 | 61.628 | 86 | 31 | 1 | 314 | 399 | 1 | 84 | 1.22e-27 | 104 |
| Msa0198900 | MtrunA17_Chr8g0370251 | 61.628 | 86 | 31 | 1 | 314 | 399 | 1 | 84 | 1.22e-27 | 104 |
| Msa0198900 | MtrunA17_Chr5g0427241 | 60.000 | 85 | 32 | 1 | 314 | 398 | 1 | 83 | 1.07e-26 | 102 |
| Msa0198900 | MtrunA17_Chr2g0295621 | 60.000 | 85 | 32 | 1 | 314 | 398 | 1 | 83 | 1.09e-26 | 102 |
| Msa0198900 | MtrunA17_Chr1g0154421 | 36.242 | 149 | 93 | 2 | 14 | 161 | 2 | 149 | 7.26e-20 | 85.5 |
| Msa0198900 | MtrunA17_Chr4g0018411 | 36.364 | 121 | 71 | 3 | 246 | 364 | 10 | 126 | 2.85e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198900 | AT5G41980.1 | 37.681 | 345 | 184 | 7 | 33 | 371 | 15 | 334 | 4.51e-71 | 228 |
| Msa0198900 | AT1G43722.1 | 35.897 | 312 | 186 | 5 | 4 | 308 | 16 | 320 | 1.44e-59 | 196 |
| Msa0198900 | AT5G28730.1 | 34.426 | 244 | 126 | 6 | 33 | 273 | 2 | 214 | 3.62e-39 | 142 |
| Msa0198900 | AT3G30525.1 | 36.686 | 169 | 101 | 2 | 172 | 335 | 1 | 168 | 7.24e-30 | 114 |
| Msa0198900 | AT5G35695.1 | 41.727 | 139 | 67 | 3 | 210 | 346 | 25 | 151 | 4.52e-28 | 110 |
| Msa0198900 | AT5G28950.1 | 44.318 | 88 | 49 | 0 | 154 | 241 | 11 | 98 | 2.14e-20 | 87.4 |
| Msa0198900 | AT4G10890.3 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.68e-16 | 80.5 |
| Msa0198900 | AT4G10890.1 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.68e-16 | 80.5 |
| Msa0198900 | AT4G10890.2 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.68e-16 | 80.5 |
Find 73 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTATCACTCAAGTTTA+AGG | 0.112859 | 2_1:-17657143 | Msa0198900:CDS |
| AGTGACCAAACTAGATTTAT+TGG | 0.193012 | 2_1:-17657525 | Msa0198900:CDS |
| TTATCGTAGACCAGTTAATT+TGG | 0.251482 | 2_1:-17656923 | Msa0198900:CDS |
| TTCTTCCAATAAATCTAGTT+TGG | 0.301437 | 2_1:+17657520 | None:intergenic |
| TGAGATGAATCCAAATTAAC+TGG | 0.308066 | 2_1:+17656913 | None:intergenic |
| CTCATTGCAAAATGAACTAT+TGG | 0.311324 | 2_1:-17658085 | None:intergenic |
| CCATGGGAACGCCGAAAATC+AGG | 0.316313 | 2_1:+17657192 | None:intergenic |
| CCCCATCGGTGTTGGATAAC+CGG | 0.331584 | 2_1:+17657251 | None:intergenic |
| TGTGTCTTAATTGTGAATTT+AGG | 0.331819 | 2_1:+17657060 | None:intergenic |
| TTCAAAGTGATCCACGATAT+TGG | 0.339686 | 2_1:-17657611 | Msa0198900:CDS |
| TGCACAATAGAAAGAACTTT+TGG | 0.340416 | 2_1:-17657120 | Msa0198900:CDS |
| GAGATCAAATTATAGAGTTC+AGG | 0.357547 | 2_1:-17656837 | Msa0198900:CDS |
| TTCTTTAGTGGCTGCGCTGA+TGG | 0.369897 | 2_1:-17658021 | Msa0198900:CDS |
| TATTAGAAGGAATGCTGATA+TGG | 0.386332 | 2_1:-17656998 | Msa0198900:CDS |
| AACTAGATTTATTGGAAGAA+AGG | 0.401366 | 2_1:-17657517 | Msa0198900:CDS |
| CTATACATAACTTTATTAGA+AGG | 0.401801 | 2_1:-17657011 | Msa0198900:CDS |
| GCTGCGCTGATGGGTGAGTA+TGG | 0.402936 | 2_1:-17658011 | Msa0198900:CDS |
| TGTAGAACTAGTGAGCTAAC+AGG | 0.402946 | 2_1:-17657963 | Msa0198900:CDS |
| TTCTACCCCTATGTGATTAG+TGG | 0.407094 | 2_1:+17657821 | None:intergenic |
| TGCACTAAATTAGTTGATCA+TGG | 0.412015 | 2_1:-17657852 | Msa0198900:CDS |
| CCAACACCGATGGGGTATCT+TGG | 0.413955 | 2_1:-17657243 | Msa0198900:CDS |
| ACTAGATTTATTGGAAGAAA+GGG | 0.418213 | 2_1:-17657516 | Msa0198900:CDS |
| TACGATAATCATCATGATCA+AGG | 0.435864 | 2_1:+17656938 | None:intergenic |
| GCAATGTTCTTACTTGTTGT+TGG | 0.446958 | 2_1:-17657789 | Msa0198900:CDS |
| TTAATACCTGGAGGAGGATG+TGG | 0.473645 | 2_1:+17657360 | None:intergenic |
| GTGAGCTAACAGGGCATGCA+TGG | 0.475764 | 2_1:-17657953 | Msa0198900:CDS |
| CCAAGATACCCCATCGGTGT+TGG | 0.475954 | 2_1:+17657243 | None:intergenic |
| TTCTTACTTGTTGTTGGACA+TGG | 0.479104 | 2_1:-17657783 | Msa0198900:CDS |
| TTGAGGCTTTATATATTCGA+TGG | 0.486174 | 2_1:+17657665 | None:intergenic |
| TTTAGGTATGTATTATTTGG+TGG | 0.486635 | 2_1:-17657277 | Msa0198900:intron |
| ATGTATTATTTGGTGGATGC+CGG | 0.486645 | 2_1:-17657270 | Msa0198900:CDS |
| TCTTTAGTGGCTGCGCTGAT+GGG | 0.486854 | 2_1:-17658020 | Msa0198900:CDS |
| CGTCGATTTCAATCGGTATG+AGG | 0.488598 | 2_1:-17656974 | Msa0198900:CDS |
| ATGTAATGGCTGTATGTGAT+TGG | 0.504425 | 2_1:-17657479 | Msa0198900:CDS |
| GCCGGTTATCCAACACCGAT+GGG | 0.518380 | 2_1:-17657252 | Msa0198900:CDS |
| TTGTTATGAGATGTTTCGAA+TGG | 0.520234 | 2_1:-17657898 | Msa0198900:CDS |
| AATAAATCTAGTTTGGTCAC+TGG | 0.523191 | 2_1:+17657527 | None:intergenic |
| TGATAACGTTCACATCTGTA+TGG | 0.526253 | 2_1:+17657219 | None:intergenic |
| TAAAGCCCACTAATCACATA+GGG | 0.528574 | 2_1:-17657827 | Msa0198900:CDS |
| TCTACCCCTATGTGATTAGT+GGG | 0.529840 | 2_1:+17657822 | None:intergenic |
| TGAAGTCGTTGTTGCAACAA+TGG | 0.546744 | 2_1:-17657034 | Msa0198900:CDS |
| GATTTGCATTTGTGAGAGCA+TGG | 0.547923 | 2_1:+17657391 | None:intergenic |
| GATGAATCATGTTCGAAACT+CGG | 0.549572 | 2_1:-17656863 | Msa0198900:CDS |
| AACATCTCATAACAACGAGT+TGG | 0.551166 | 2_1:+17657906 | None:intergenic |
| TGCCGGTTATCCAACACCGA+TGG | 0.556028 | 2_1:-17657253 | Msa0198900:CDS |
| CATGGGAACGCCGAAAATCA+GGG | 0.556357 | 2_1:+17657193 | None:intergenic |
| ATATGGACGTCGATTTCAAT+CGG | 0.561835 | 2_1:-17656981 | Msa0198900:CDS |
| TCACAGTTTCACCTGAGTGT+TGG | 0.562860 | 2_1:+17657730 | None:intergenic |
| ACTTGTTGTTGGACATGGAG+TGG | 0.572106 | 2_1:-17657778 | Msa0198900:CDS |
| CTTGTTGTTGGACATGGAGT+GGG | 0.572884 | 2_1:-17657777 | Msa0198900:CDS |
| CAAGAAAGGTTCCAACACTC+AGG | 0.576876 | 2_1:-17657741 | Msa0198900:CDS |
| ATATCCGACACAAAATGTAA+TGG | 0.578336 | 2_1:-17657493 | Msa0198900:CDS |
| GTAACAGAATGATTCAAGAA+AGG | 0.580146 | 2_1:-17657755 | Msa0198900:CDS |
| TTAAAGCCCACTAATCACAT+AGG | 0.582939 | 2_1:-17657828 | Msa0198900:CDS |
| GTTAGCTCACTAGTTCTACA+TGG | 0.598706 | 2_1:+17657966 | None:intergenic |
| ATAATATTAATACCTGGAGG+AGG | 0.608585 | 2_1:+17657354 | None:intergenic |
| TGGGTGAAAGAAGTGTTACA+AGG | 0.613940 | 2_1:-17657933 | Msa0198900:CDS |
| GTAGAACTAGTGAGCTAACA+GGG | 0.616141 | 2_1:-17657962 | Msa0198900:CDS |
| TGAGCTAACAGGGCATGCAT+GGG | 0.618880 | 2_1:-17657952 | Msa0198900:CDS |
| GTCACTGGCACTAACCACAC+AGG | 0.619956 | 2_1:+17657542 | None:intergenic |
| ACGATAATCATCATGATCAA+GGG | 0.621055 | 2_1:+17656939 | None:intergenic |
| AACATGATTCATCTCAGATG+AGG | 0.624817 | 2_1:+17656873 | None:intergenic |
| TCACTGAACAAAGGATCTTG+AGG | 0.628315 | 2_1:+17657648 | None:intergenic |
| GCATGACTATCACTGAACAA+AGG | 0.657979 | 2_1:+17657639 | None:intergenic |
| AATGCTATAGGAGCAATCGA+TGG | 0.684778 | 2_1:-17657576 | Msa0198900:CDS |
| TCACTGGCACTAACCACACA+GGG | 0.685550 | 2_1:+17657543 | None:intergenic |
| GGGTGAAAGAAGTGTTACAA+GGG | 0.685898 | 2_1:-17657932 | Msa0198900:CDS |
| CCGGTTATCCAACACCGATG+GGG | 0.699683 | 2_1:-17657251 | Msa0198900:CDS |
| TATGGACCAAGATACCCCAT+CGG | 0.700535 | 2_1:+17657237 | None:intergenic |
| AAAGCCCACTAATCACATAG+GGG | 0.730444 | 2_1:-17657826 | Msa0198900:CDS |
| TGGTACGCATATTCCCTGTG+TGG | 0.730498 | 2_1:-17657556 | Msa0198900:CDS |
| GGGAACGCCGAAAATCAGGG+AGG | 0.802967 | 2_1:+17657196 | None:intergenic |
| TGGGTTTGAAAATAACAACG+AGG | 0.807645 | 2_1:-17657172 | Msa0198900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr2_1:17657605-17657624 | Msa0198900:CDS | 0.0% |
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr2_1:17657605-17657624 | Msa0198900:CDS | 0.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr2_1:17657571-17657590 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr2_1:17657619-17657638 | Msa0198900:CDS | 15.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr2_1:17657571-17657590 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr2_1:17657619-17657638 | Msa0198900:CDS | 15.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr2_1:17657554-17657573 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr2_1:17657756-17657775 | Msa0198900:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr2_1:17657888-17657907 | Msa0198900:CDS | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr2_1:17657554-17657573 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr2_1:17657756-17657775 | Msa0198900:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr2_1:17657888-17657907 | Msa0198900:CDS | 20.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr2_1:17657032-17657051 | None:intergenic | 25.0% |
| ! | CCTATAGCATTCTTAAAAAA+TGG | + | chr2_1:17657314-17657333 | None:intergenic | 25.0% |
| !!! | CCATTTTTTAAGAATGCTAT+AGG | - | chr2_1:17657311-17657330 | Msa0198900:intron | 25.0% |
| ! | TTCTTCCAATAAATCTAGTT+TGG | + | chr2_1:17657382-17657401 | None:intergenic | 25.0% |
| ! | AACTAGATTTATTGGAAGAA+AGG | - | chr2_1:17657382-17657401 | Msa0198900:CDS | 25.0% |
| ! | ACTAGATTTATTGGAAGAAA+GGG | - | chr2_1:17657383-17657402 | Msa0198900:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr2_1:17657622-17657641 | Msa0198900:CDS | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | + | chr2_1:17657842-17657861 | None:intergenic | 25.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr2_1:17657032-17657051 | None:intergenic | 25.0% |
| ! | CCTATAGCATTCTTAAAAAA+TGG | + | chr2_1:17657314-17657333 | None:intergenic | 25.0% |
| !!! | CCATTTTTTAAGAATGCTAT+AGG | - | chr2_1:17657311-17657330 | Msa0198900:intron | 25.0% |
| ! | TTCTTCCAATAAATCTAGTT+TGG | + | chr2_1:17657382-17657401 | None:intergenic | 25.0% |
| ! | AACTAGATTTATTGGAAGAA+AGG | - | chr2_1:17657382-17657401 | Msa0198900:CDS | 25.0% |
| ! | ACTAGATTTATTGGAAGAAA+GGG | - | chr2_1:17657383-17657402 | Msa0198900:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr2_1:17657622-17657641 | Msa0198900:CDS | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | + | chr2_1:17657842-17657861 | None:intergenic | 25.0% |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr2_1:17656866-17656885 | Msa0198900:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr2_1:17657001-17657020 | Msa0198900:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr2_1:17657047-17657066 | Msa0198900:CDS | 30.0% | |
| GTAACAGAATGATTCAAGAA+AGG | - | chr2_1:17657144-17657163 | Msa0198900:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr2_1:17657237-17657256 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr2_1:17657302-17657321 | None:intergenic | 30.0% | |
| ! | AATAAATCTAGTTTGGTCAC+TGG | + | chr2_1:17657375-17657394 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | - | chr2_1:17657374-17657393 | Msa0198900:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr2_1:17657406-17657425 | Msa0198900:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr2_1:17657548-17657567 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr2_1:17657551-17657570 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCAT+GGG | + | chr2_1:17657726-17657745 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr2_1:17657779-17657798 | Msa0198900:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr2_1:17657786-17657805 | Msa0198900:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr2_1:17657901-17657920 | Msa0198900:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr2_1:17657963-17657982 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr2_1:17657964-17657983 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr2_1:17657976-17657995 | Msa0198900:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr2_1:17657989-17658008 | None:intergenic | 30.0% | |
| GAGATCAAATTATAGAGTTC+AGG | - | chr2_1:17658062-17658081 | Msa0198900:CDS | 30.0% | |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr2_1:17656866-17656885 | Msa0198900:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr2_1:17657001-17657020 | Msa0198900:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr2_1:17657047-17657066 | Msa0198900:CDS | 30.0% | |
| GTAACAGAATGATTCAAGAA+AGG | - | chr2_1:17657144-17657163 | Msa0198900:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr2_1:17657237-17657256 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr2_1:17657302-17657321 | None:intergenic | 30.0% | |
| ! | AATAAATCTAGTTTGGTCAC+TGG | + | chr2_1:17657375-17657394 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | - | chr2_1:17657374-17657393 | Msa0198900:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr2_1:17657406-17657425 | Msa0198900:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr2_1:17657548-17657567 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr2_1:17657551-17657570 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCAT+GGG | + | chr2_1:17657726-17657745 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr2_1:17657779-17657798 | Msa0198900:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr2_1:17657786-17657805 | Msa0198900:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr2_1:17657901-17657920 | Msa0198900:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr2_1:17657963-17657982 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr2_1:17657964-17657983 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr2_1:17657976-17657995 | Msa0198900:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr2_1:17657989-17658008 | None:intergenic | 30.0% | |
| GAGATCAAATTATAGAGTTC+AGG | - | chr2_1:17658062-17658081 | Msa0198900:CDS | 30.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr2_1:17656996-17657015 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr2_1:17657071-17657090 | Msa0198900:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr2_1:17657072-17657091 | Msa0198900:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr2_1:17657110-17657129 | Msa0198900:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr2_1:17657116-17657135 | Msa0198900:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr2_1:17657288-17657307 | Msa0198900:intron | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | + | chr2_1:17657413-17657432 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | - | chr2_1:17657420-17657439 | Msa0198900:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr2_1:17657449-17657468 | Msa0198900:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr2_1:17657453-17657472 | Msa0198900:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr2_1:17657454-17657473 | Msa0198900:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr2_1:17657629-17657648 | Msa0198900:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr2_1:17657683-17657702 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCA+TGG | + | chr2_1:17657727-17657746 | None:intergenic | 35.0% |
| TGGGTTTGAAAATAACAACG+AGG | - | chr2_1:17657727-17657746 | Msa0198900:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr2_1:17657918-17657937 | Msa0198900:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr2_1:17658029-17658048 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr2_1:17658036-17658055 | Msa0198900:CDS | 35.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr2_1:17656996-17657015 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr2_1:17657071-17657090 | Msa0198900:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr2_1:17657072-17657091 | Msa0198900:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr2_1:17657110-17657129 | Msa0198900:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr2_1:17657116-17657135 | Msa0198900:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr2_1:17657288-17657307 | Msa0198900:intron | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | + | chr2_1:17657413-17657432 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | - | chr2_1:17657420-17657439 | Msa0198900:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr2_1:17657449-17657468 | Msa0198900:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr2_1:17657453-17657472 | Msa0198900:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr2_1:17657454-17657473 | Msa0198900:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr2_1:17657629-17657648 | Msa0198900:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr2_1:17657683-17657702 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCA+TGG | + | chr2_1:17657727-17657746 | None:intergenic | 35.0% |
| TGGGTTTGAAAATAACAACG+AGG | - | chr2_1:17657727-17657746 | Msa0198900:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr2_1:17657918-17657937 | Msa0198900:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr2_1:17658029-17658048 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr2_1:17658036-17658055 | Msa0198900:CDS | 35.0% | |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr2_1:17656936-17656955 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr2_1:17656936-17656955 | Msa0198900:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr2_1:17656937-17656956 | Msa0198900:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr2_1:17656966-17656985 | Msa0198900:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr2_1:17656967-17656986 | Msa0198900:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr2_1:17657073-17657092 | Msa0198900:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr2_1:17657080-17657099 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr2_1:17657081-17657100 | None:intergenic | 40.0% | |
| TCACTGAACAAAGGATCTTG+AGG | + | chr2_1:17657254-17657273 | None:intergenic | 40.0% | |
| GCATGACTATCACTGAACAA+AGG | + | chr2_1:17657263-17657282 | None:intergenic | 40.0% | |
| AATGCTATAGGAGCAATCGA+TGG | - | chr2_1:17657323-17657342 | Msa0198900:intron | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr2_1:17657458-17657477 | Msa0198900:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr2_1:17657489-17657508 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr2_1:17657511-17657530 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr2_1:17657696-17657715 | Msa0198900:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr2_1:17657865-17657884 | Msa0198900:CDS | 40.0% | |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr2_1:17656936-17656955 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr2_1:17656936-17656955 | Msa0198900:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr2_1:17656937-17656956 | Msa0198900:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr2_1:17656966-17656985 | Msa0198900:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr2_1:17656967-17656986 | Msa0198900:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr2_1:17657073-17657092 | Msa0198900:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr2_1:17657080-17657099 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr2_1:17657081-17657100 | None:intergenic | 40.0% | |
| TCACTGAACAAAGGATCTTG+AGG | + | chr2_1:17657254-17657273 | None:intergenic | 40.0% | |
| GCATGACTATCACTGAACAA+AGG | + | chr2_1:17657263-17657282 | None:intergenic | 40.0% | |
| AATGCTATAGGAGCAATCGA+TGG | - | chr2_1:17657323-17657342 | Msa0198900:intron | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr2_1:17657458-17657477 | Msa0198900:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr2_1:17657489-17657508 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr2_1:17657511-17657530 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr2_1:17657696-17657715 | Msa0198900:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr2_1:17657865-17657884 | Msa0198900:CDS | 40.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr2_1:17657121-17657140 | Msa0198900:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr2_1:17657122-17657141 | Msa0198900:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr2_1:17657158-17657177 | Msa0198900:CDS | 45.0% | |
| TCACAGTTTCACCTGAGTGT+TGG | + | chr2_1:17657172-17657191 | None:intergenic | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr2_1:17657490-17657509 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr2_1:17657533-17657552 | Msa0198900:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr2_1:17657542-17657561 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr2_1:17657665-17657684 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr2_1:17657925-17657944 | Msa0198900:CDS | 45.0% |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr2_1:17657121-17657140 | Msa0198900:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr2_1:17657122-17657141 | Msa0198900:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr2_1:17657158-17657177 | Msa0198900:CDS | 45.0% | |
| TCACAGTTTCACCTGAGTGT+TGG | + | chr2_1:17657172-17657191 | None:intergenic | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr2_1:17657490-17657509 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr2_1:17657533-17657552 | Msa0198900:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr2_1:17657542-17657561 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr2_1:17657665-17657684 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr2_1:17657925-17657944 | Msa0198900:CDS | 45.0% |
| TTCTTTAGTGGCTGCGCTGA+TGG | - | chr2_1:17656878-17656897 | Msa0198900:CDS | 50.0% | |
| ! | TCTTTAGTGGCTGCGCTGAT+GGG | - | chr2_1:17656879-17656898 | Msa0198900:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr2_1:17656947-17656966 | Msa0198900:CDS | 50.0% | |
| TGGTACGCATATTCCCTGTG+TGG | - | chr2_1:17657343-17657362 | Msa0198900:intron | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | + | chr2_1:17657359-17657378 | None:intergenic | 50.0% | |
| CATGGGAACGCCGAAAATCA+GGG | + | chr2_1:17657709-17657728 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAT+GGG | - | chr2_1:17657708-17657727 | Msa0198900:CDS | 50.0% |
| TTCTTTAGTGGCTGCGCTGA+TGG | - | chr2_1:17656878-17656897 | Msa0198900:CDS | 50.0% | |
| ! | TCTTTAGTGGCTGCGCTGAT+GGG | - | chr2_1:17656879-17656898 | Msa0198900:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr2_1:17656947-17656966 | Msa0198900:CDS | 50.0% | |
| TGGTACGCATATTCCCTGTG+TGG | - | chr2_1:17657343-17657362 | Msa0198900:intron | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | + | chr2_1:17657359-17657378 | None:intergenic | 50.0% | |
| CATGGGAACGCCGAAAATCA+GGG | + | chr2_1:17657709-17657728 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAT+GGG | - | chr2_1:17657708-17657727 | Msa0198900:CDS | 50.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr2_1:17656946-17656965 | Msa0198900:CDS | 55.0% | |
| GTCACTGGCACTAACCACAC+AGG | + | chr2_1:17657360-17657379 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr2_1:17657646-17657665 | Msa0198900:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr2_1:17657647-17657666 | Msa0198900:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr2_1:17657651-17657670 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr2_1:17657648-17657667 | Msa0198900:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr2_1:17657659-17657678 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr2_1:17657656-17657675 | Msa0198900:CDS | 55.0% |
| CCATGGGAACGCCGAAAATC+AGG | + | chr2_1:17657710-17657729 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+TGG | - | chr2_1:17657707-17657726 | Msa0198900:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr2_1:17656946-17656965 | Msa0198900:CDS | 55.0% | |
| GTCACTGGCACTAACCACAC+AGG | + | chr2_1:17657360-17657379 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr2_1:17657646-17657665 | Msa0198900:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr2_1:17657647-17657666 | Msa0198900:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr2_1:17657651-17657670 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr2_1:17657648-17657667 | Msa0198900:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr2_1:17657659-17657678 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr2_1:17657656-17657675 | Msa0198900:CDS | 55.0% |
| CCATGGGAACGCCGAAAATC+AGG | + | chr2_1:17657710-17657729 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+TGG | - | chr2_1:17657707-17657726 | Msa0198900:CDS | 55.0% |
| ! | GCTGCGCTGATGGGTGAGTA+TGG | - | chr2_1:17656888-17656907 | Msa0198900:CDS | 60.0% |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr2_1:17657706-17657725 | None:intergenic | 60.0% | |
| ! | GCTGCGCTGATGGGTGAGTA+TGG | - | chr2_1:17656888-17656907 | Msa0198900:CDS | 60.0% |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr2_1:17657706-17657725 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 17656825 | 17658096 | 17656825 | ID=Msa0198900;Name=Msa0198900 |
| chr2_1 | mRNA | 17656825 | 17658096 | 17656825 | ID=Msa0198900-mRNA-1;Parent=Msa0198900;Name=Msa0198900-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0|1|1|1|2|0|399 |
| chr2_1 | exon | 17657367 | 17658096 | 17657367 | ID=Msa0198900-mRNA-1:exon:7494;Parent=Msa0198900-mRNA-1 |
| chr2_1 | exon | 17656825 | 17657294 | 17656825 | ID=Msa0198900-mRNA-1:exon:7493;Parent=Msa0198900-mRNA-1 |
| chr2_1 | CDS | 17657367 | 17658096 | 17657367 | ID=Msa0198900-mRNA-1:cds;Parent=Msa0198900-mRNA-1 |
| chr2_1 | CDS | 17656825 | 17657294 | 17656825 | ID=Msa0198900-mRNA-1:cds;Parent=Msa0198900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
