Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254580 | XP_003596281.1 | 84.308 | 325 | 34 | 3 | 1 | 324 | 1 | 309 | 0.0 | 524 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254580 | G7IR11 | 84.308 | 325 | 34 | 3 | 1 | 324 | 1 | 309 | 0.0 | 524 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa0254580 | 0.804413 | 2.185841e-49 | -8.615850e-47 |
| Msa0183830 | Msa0254580 | 0.807281 | 5.457357e-50 | -8.615850e-47 |
| Msa0254580 | Msa1252190 | 0.801373 | 9.285179e-49 | -8.615850e-47 |
| Msa0254580 | Msa1292830 | 0.808743 | 2.666192e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254580 | MtrunA17_Chr2g0315231 | 84.308 | 325 | 34 | 3 | 1 | 324 | 1 | 309 | 0.0 | 524 |
| Msa0254580 | MtrunA17_Chr2g0315221 | 58.589 | 326 | 70 | 6 | 1 | 322 | 1 | 265 | 1.76e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254580 | AT1G53460.1 | 41.053 | 285 | 144 | 7 | 46 | 322 | 39 | 307 | 1.26e-50 | 171 |
Find 84 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCCAAATCCAATTTAT+TGG | 0.151825 | 2_2:+48138054 | None:intergenic |
| TCTGAGTGTGAAATTGAATT+TGG | 0.162937 | 2_2:+48141160 | None:intergenic |
| CATCTTTAAAATACCCATTT+TGG | 0.169188 | 2_2:+48140724 | None:intergenic |
| CTATTCTTTGCAAACCATTT+TGG | 0.184456 | 2_2:-48137787 | Msa0254580:three_prime_UTR |
| TTTGTTGGGTTTGAGAATTT+TGG | 0.188205 | 2_2:+48141114 | None:intergenic |
| CTTCCAGACAATTTATTCTT+TGG | 0.190407 | 2_2:+48137711 | None:intergenic |
| GAAATGTGATACCAATAAAT+TGG | 0.198607 | 2_2:-48138065 | Msa0254580:CDS |
| TAGCTTTGTGAAATGATTTA+TGG | 0.209990 | 2_2:+48137807 | None:intergenic |
| TTGTACCATTTATACCAAAA+TGG | 0.247649 | 2_2:-48140738 | Msa0254580:CDS |
| TCAATTCGTATTAACTATAA+TGG | 0.252609 | 2_2:-48137419 | Msa0254580:three_prime_UTR |
| TCTCATTTAACTGCTGAAAA+AGG | 0.269103 | 2_2:-48137563 | Msa0254580:three_prime_UTR |
| CTGAGTGTGAAATTGAATTT+GGG | 0.277348 | 2_2:+48141161 | None:intergenic |
| TTTGAGACTCCTTATGCTTT+GGG | 0.287556 | 2_2:-48140660 | Msa0254580:CDS |
| TGATACCAATAAATTGGATT+TGG | 0.294300 | 2_2:-48138059 | Msa0254580:CDS |
| TTCCAGACAATTTATTCTTT+GGG | 0.299986 | 2_2:+48137712 | None:intergenic |
| GTTTGAGACTCCTTATGCTT+TGG | 0.307272 | 2_2:-48140661 | Msa0254580:CDS |
| GGGTTGGGGTGAGGATGAAA+TGG | 0.309816 | 2_2:+48141136 | None:intergenic |
| TTGATTCGCAGATGGCTATC+TGG | 0.338869 | 2_2:-48138340 | Msa0254580:intron |
| GCAGCCATGGAAATGGAAAA+TGG | 0.370599 | 2_2:+48141239 | None:intergenic |
| AGCTATTTCAACATTATCAT+TGG | 0.376494 | 2_2:+48140608 | None:intergenic |
| CGCGGTATAAGACGCAATTT+CGG | 0.380142 | 2_2:+48141302 | None:intergenic |
| AATTTGTGAATCAAGATGTT+TGG | 0.383821 | 2_2:-48138087 | Msa0254580:CDS |
| AGAAAAGCAATCTCCCAAAA+TGG | 0.393538 | 2_2:+48137773 | None:intergenic |
| CACCTGAGTGAGACTGCTTC+TGG | 0.394165 | 2_2:-48137912 | Msa0254580:exon |
| TGTACCATTTATACCAAAAT+GGG | 0.402765 | 2_2:-48140737 | Msa0254580:CDS |
| AGAGTTGTAAGAAATGGAAT+AGG | 0.403655 | 2_2:-48137658 | Msa0254580:three_prime_UTR |
| GAAAGCTCCTTCACAACAAA+TGG | 0.406647 | 2_2:+48140780 | None:intergenic |
| GAAGGAGCTTTCAATTGAAA+TGG | 0.415268 | 2_2:-48140769 | Msa0254580:CDS |
| AACCCAAAGAATAAATTGTC+TGG | 0.416052 | 2_2:-48137714 | Msa0254580:three_prime_UTR |
| TGGTGTAATCAGTGAGAAAA+TGG | 0.417329 | 2_2:-48140859 | Msa0254580:CDS |
| TTTGGGTTGAGCATCATCAT+TGG | 0.419710 | 2_2:+48137729 | None:intergenic |
| GAGAAAAGCAGCCATGGAAA+TGG | 0.420366 | 2_2:+48141232 | None:intergenic |
| GAGTGAAGAGTTGTAAGAAA+TGG | 0.434623 | 2_2:-48137664 | Msa0254580:three_prime_UTR |
| TATTTCACACTGCAGCTGAT+TGG | 0.439570 | 2_2:+48137491 | None:intergenic |
| ACACTTGGTGCATCCTCAGC+TGG | 0.449633 | 2_2:-48138002 | Msa0254580:CDS |
| GGTTGGGGTGAGGATGAAAT+GGG | 0.450654 | 2_2:+48141137 | None:intergenic |
| TCAAATTATGATCATAGAAA+AGG | 0.451957 | 2_2:-48137533 | Msa0254580:three_prime_UTR |
| ATCTTTATATGCTGGTTGGA+TGG | 0.456051 | 2_2:-48137632 | Msa0254580:three_prime_UTR |
| TGGATGGTTTGTTTCTTCAC+AGG | 0.458260 | 2_2:-48137616 | Msa0254580:three_prime_UTR |
| TTGAAGCAAGTGGCAGTGTT+TGG | 0.459813 | 2_2:-48138310 | Msa0254580:CDS |
| ATGCAAGATTTAACATTGGT+TGG | 0.460291 | 2_2:-48140683 | Msa0254580:CDS |
| TTGGTTGCCCCTCGGTCAGC+AGG | 0.465248 | 2_2:-48138291 | Msa0254580:CDS |
| GGATTTGGAGATAACTATGA+AGG | 0.483262 | 2_2:-48138044 | Msa0254580:CDS |
| TTAACATAACCCAAAGCATA+AGG | 0.485174 | 2_2:+48140651 | None:intergenic |
| ATAGGGTCATCTTTATATGC+TGG | 0.492804 | 2_2:-48137640 | Msa0254580:three_prime_UTR |
| GAGTTGTAAGAAATGGAATA+GGG | 0.494650 | 2_2:-48137657 | Msa0254580:three_prime_UTR |
| TCACACTGCAGCTGATTGGT+TGG | 0.495997 | 2_2:+48137495 | None:intergenic |
| TTCTCACTGATTACACCATC+GGG | 0.497156 | 2_2:+48140864 | None:intergenic |
| GGCAGTGTTTGGTTGCCCCT+CGG | 0.497165 | 2_2:-48138299 | Msa0254580:CDS |
| AATGGCTCACACATCCTAGT+AGG | 0.515937 | 2_2:-48137401 | Msa0254580:three_prime_UTR |
| TTTCTCACTGATTACACCAT+CGG | 0.516046 | 2_2:+48140863 | None:intergenic |
| CAGCTCGATGTCGCCGACAC+CGG | 0.516997 | 2_2:+48141016 | None:intergenic |
| GAGAAAAGATGGTAAGAGAA+AGG | 0.519172 | 2_2:-48140832 | Msa0254580:CDS |
| GAGGAGAGTGATAGTGTGCT+AGG | 0.519235 | 2_2:+48141264 | None:intergenic |
| AAAATGGTTGTGAGAAAAGA+TGG | 0.522090 | 2_2:-48140843 | Msa0254580:CDS |
| GGTCATCTTTATATGCTGGT+TGG | 0.530326 | 2_2:-48137636 | Msa0254580:three_prime_UTR |
| TTTGTGAAATGATTTATGGC+TGG | 0.536563 | 2_2:+48137811 | None:intergenic |
| AATTCAGAAGAAATCCTACT+AGG | 0.539239 | 2_2:+48137387 | None:intergenic |
| TATTTCATATGCTTTACACT+TGG | 0.545051 | 2_2:-48138017 | Msa0254580:CDS |
| CTGATTACACCATCGGGAAG+TGG | 0.553184 | 2_2:+48140870 | None:intergenic |
| AAACTGACAGCTATTATATG+AGG | 0.556685 | 2_2:-48137841 | Msa0254580:three_prime_UTR |
| GAGAGAACCATTTGTTGTGA+AGG | 0.560428 | 2_2:-48140787 | Msa0254580:CDS |
| ATCGACGAAGACGAAGAATC+CGG | 0.563125 | 2_2:-48141035 | Msa0254580:CDS |
| TGAAACGGTGTCGTGTGAGA+AGG | 0.565127 | 2_2:+48141204 | None:intergenic |
| TTCGTCTTCGTCGATTGTTG+TGG | 0.566838 | 2_2:+48141043 | None:intergenic |
| TCTTCCCTGCGAAAAGACTA+CGG | 0.575304 | 2_2:-48138261 | Msa0254580:CDS |
| GTTCATGCAAGATTTAACAT+TGG | 0.578282 | 2_2:-48140687 | Msa0254580:CDS |
| ATGGAAATGGAAAATGGAAG+AGG | 0.581578 | 2_2:+48141245 | None:intergenic |
| GCATCATCATTGGAAAACTT+AGG | 0.585448 | 2_2:+48137739 | None:intergenic |
| AACCAGAAGCAGTCTCACTC+AGG | 0.589004 | 2_2:+48137910 | None:intergenic |
| AAAAGATGGTAAGAGAAAGG+TGG | 0.591517 | 2_2:-48140829 | Msa0254580:CDS |
| ACATCATTCCTGCTGACCGA+GGG | 0.592631 | 2_2:+48138283 | None:intergenic |
| AATTATGATCATAGAAAAGG+TGG | 0.602121 | 2_2:-48137530 | Msa0254580:three_prime_UTR |
| GACATCATTCCTGCTGACCG+AGG | 0.603201 | 2_2:+48138282 | None:intergenic |
| ACAAATCAACCACTTCCCGA+TGG | 0.624167 | 2_2:-48140879 | Msa0254580:CDS |
| TGGAAGTGCATTGAAGCAAG+TGG | 0.637806 | 2_2:-48138320 | Msa0254580:CDS |
| TCATCAGACACTACCAGCTG+AGG | 0.654887 | 2_2:+48137989 | None:intergenic |
| ACTCACGTCAGAATTTCGAA+AGG | 0.664273 | 2_2:+48137683 | None:intergenic |
| TCGGAGAAGAGAGTGCTGAG+AGG | 0.682515 | 2_2:+48141083 | None:intergenic |
| GAAGACGAAGAATCCGGTGT+CGG | 0.690479 | 2_2:-48141029 | Msa0254580:CDS |
| TGAGTGTGAAATTGAATTTG+GGG | 0.690582 | 2_2:+48141162 | None:intergenic |
| CATCATTCCTGCTGACCGAG+GGG | 0.710730 | 2_2:+48138284 | None:intergenic |
| GAGTGTGAAATTGAATTTGG+GGG | 0.719918 | 2_2:+48141163 | None:intergenic |
| AGGTCTCGATCAGTGCAGCG+CGG | 0.790014 | 2_2:+48141284 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTAAAATATGAAAC+CGG | - | chr2_2:48138469-48138488 | Msa0254580:intron | 10.0% |
| !!! | ATTTGAATAAAATGTTATTT+GGG | - | chr2_2:48138522-48138541 | Msa0254580:intron | 10.0% |
| !!! | AAACATAATTTTTGATTATT+TGG | + | chr2_2:48139664-48139683 | None:intergenic | 10.0% |
| !!! | ATTTTGAATTATGTTTCTTT+TGG | - | chr2_2:48138118-48138137 | Msa0254580:CDS | 15.0% |
| !!! | TTTTGAATTATGTTTCTTTT+GGG | - | chr2_2:48138119-48138138 | Msa0254580:CDS | 15.0% |
| !!! | TTAAAATTTTCAAAATGTTC+CGG | + | chr2_2:48138459-48138478 | None:intergenic | 15.0% |
| !! | CATTTGAATAAAATGTTATT+TGG | - | chr2_2:48138521-48138540 | Msa0254580:intron | 15.0% |
| !!! | AATAACAAAATTTTCCAAAT+TGG | + | chr2_2:48139324-48139343 | None:intergenic | 15.0% |
| !! | ATAAATGAGCATATAATATT+AGG | - | chr2_2:48140215-48140234 | Msa0254580:intron | 15.0% |
| !! | TTTAAGCCAAAAAAATCAAA+AGG | - | chr2_2:48137707-48137726 | Msa0254580:three_prime_UTR | 20.0% |
| !! | TTAAGCCAAAAAAATCAAAA+GGG | - | chr2_2:48137708-48137727 | Msa0254580:three_prime_UTR | 20.0% |
| !!! | TTTTCAATTTCAACTTTCTT+TGG | + | chr2_2:48137740-48137759 | None:intergenic | 20.0% |
| !! | TTTAGTCAATAATCACAATA+GGG | + | chr2_2:48138498-48138517 | None:intergenic | 20.0% |
| !!! | TATTGTGATTATTGACTAAA+GGG | - | chr2_2:48138498-48138517 | Msa0254580:intron | 20.0% |
| !! | TCTACAATCTCAAAATTTAA+AGG | + | chr2_2:48138816-48138835 | None:intergenic | 20.0% |
| !!! | TTAGATTACTATTAACTTGA+GGG | - | chr2_2:48139156-48139175 | Msa0254580:intron | 20.0% |
| !! | TTTCCTTTAATTATACGATA+TGG | - | chr2_2:48139359-48139378 | Msa0254580:intron | 20.0% |
| !!! | TTTCACATTTGTATTTGTTT+TGG | - | chr2_2:48139554-48139573 | Msa0254580:intron | 20.0% |
| !! | CTAGTTAGTATCATAAATAT+CGG | - | chr2_2:48139700-48139719 | Msa0254580:intron | 20.0% |
| !!! | GTAAATATAATTTTGTTTGC+AGG | + | chr2_2:48139823-48139842 | None:intergenic | 20.0% |
| !!! | TTTATGTTTTGTTTGATTAG+TGG | - | chr2_2:48139977-48139996 | Msa0254580:intron | 20.0% |
| !! | ATTTACAATATAATGCAAGA+GGG | + | chr2_2:48140048-48140067 | None:intergenic | 20.0% |
| !! | TATTTACAATATAATGCAAG+AGG | + | chr2_2:48140049-48140068 | None:intergenic | 20.0% |
| !! | TCAAATTATGATCATAGAAA+AGG | - | chr2_2:48141128-48141147 | Msa0254580:CDS | 20.0% |
| !! | TCAATTCGTATTAACTATAA+TGG | - | chr2_2:48141242-48141261 | Msa0254580:exon | 20.0% |
| ! | TAAGCCAAAAAAATCAAAAG+GGG | - | chr2_2:48137709-48137728 | Msa0254580:three_prime_UTR | 25.0% |
| !!! | ATAACCCCTTTTGATTTTTT+TGG | + | chr2_2:48137716-48137735 | None:intergenic | 25.0% |
| ! | TTGTACCATTTATACCAAAA+TGG | - | chr2_2:48137923-48137942 | Msa0254580:exon | 25.0% |
| ! | TGTACCATTTATACCAAAAT+GGG | - | chr2_2:48137924-48137943 | Msa0254580:exon | 25.0% |
| !!! | AATACCCATTTTGGTATAAA+TGG | + | chr2_2:48137931-48137950 | None:intergenic | 25.0% |
| !!! | CATCTTTAAAATACCCATTT+TGG | + | chr2_2:48137940-48137959 | None:intergenic | 25.0% |
| !! | AGCTATTTCAACATTATCAT+TGG | + | chr2_2:48138056-48138075 | None:intergenic | 25.0% |
| !!! | GTATGAGTTTTAAGAAAATG+TGG | - | chr2_2:48138198-48138217 | Msa0254580:intron | 25.0% |
| ! | TGTTGTATATAAACTACCAT+TGG | - | chr2_2:48138398-48138417 | Msa0254580:intron | 25.0% |
| ! | CTTTAGTCAATAATCACAAT+AGG | + | chr2_2:48138499-48138518 | None:intergenic | 25.0% |
| !! | CTATTGTGATTATTGACTAA+AGG | - | chr2_2:48138497-48138516 | Msa0254580:intron | 25.0% |
| ! | TTTATATGCATCAAACATGT+AGG | - | chr2_2:48138584-48138603 | Msa0254580:intron | 25.0% |
| !! | TTGATCTTCTTTTCATAAGT+AGG | - | chr2_2:48138764-48138783 | Msa0254580:intron | 25.0% |
| ! | TAGTCAGCTCAAATAATTTA+AGG | - | chr2_2:48138955-48138974 | Msa0254580:intron | 25.0% |
| !! | GTTAGATTACTATTAACTTG+AGG | - | chr2_2:48139155-48139174 | Msa0254580:intron | 25.0% |
| !! | TAGATTACTATTAACTTGAG+GGG | - | chr2_2:48139157-48139176 | Msa0254580:intron | 25.0% |
| ! | AGAAACAAATAGATAAATGC+GGG | + | chr2_2:48139197-48139216 | None:intergenic | 25.0% |
| ! | GAGAAACAAATAGATAAATG+CGG | + | chr2_2:48139198-48139217 | None:intergenic | 25.0% |
| ! | CAACCATATCGTATAATTAA+AGG | + | chr2_2:48139365-48139384 | None:intergenic | 25.0% |
| !!! | ACATTTGTATTTGTTTTGGA+AGG | - | chr2_2:48139558-48139577 | Msa0254580:intron | 25.0% |
| !! | ACATTTTTCACAATATCATG+AGG | - | chr2_2:48139767-48139786 | Msa0254580:intron | 25.0% |
| !!! | AGGTAGGTAATATTTTGAAA+AGG | - | chr2_2:48139787-48139806 | Msa0254580:intron | 25.0% |
| ! | GCTAACTATCAAAAGTTAAA+AGG | + | chr2_2:48139845-48139864 | None:intergenic | 25.0% |
| ! | TAGATCTTGTAAATCTCAAA+AGG | - | chr2_2:48140014-48140033 | Msa0254580:intron | 25.0% |
| ! | TAAGTTAGAAAATACAGTGA+AGG | + | chr2_2:48140476-48140495 | None:intergenic | 25.0% |
| ! | AATTTGTGAATCAAGATGTT+TGG | - | chr2_2:48140574-48140593 | Msa0254580:intron | 25.0% |
| ! | GAAATGTGATACCAATAAAT+TGG | - | chr2_2:48140596-48140615 | Msa0254580:intron | 25.0% |
| ! | TGATACCAATAAATTGGATT+TGG | - | chr2_2:48140602-48140621 | Msa0254580:intron | 25.0% |
| ! | TATCTCCAAATCCAATTTAT+TGG | + | chr2_2:48140610-48140629 | None:intergenic | 25.0% |
| ! | TATTTCATATGCTTTACACT+TGG | - | chr2_2:48140644-48140663 | Msa0254580:CDS | 25.0% |
| !!! | TAGCTTTGTGAAATGATTTA+TGG | + | chr2_2:48140857-48140876 | None:intergenic | 25.0% |
| !! | TATTCTTTGCAAACCATTTT+GGG | - | chr2_2:48140875-48140894 | Msa0254580:CDS | 25.0% |
| ! | TTCCAGACAATTTATTCTTT+GGG | + | chr2_2:48140952-48140971 | None:intergenic | 25.0% |
| ! | AATTATGATCATAGAAAAGG+TGG | - | chr2_2:48141131-48141150 | Msa0254580:CDS | 25.0% |
| ATTGAATTTGGGGGAATTTA+GGG | + | chr2_2:48137492-48137511 | None:intergenic | 30.0% | |
| AATTGAATTTGGGGGAATTT+AGG | + | chr2_2:48137493-48137512 | None:intergenic | 30.0% | |
| TGAGTGTGAAATTGAATTTG+GGG | + | chr2_2:48137502-48137521 | None:intergenic | 30.0% | |
| CTGAGTGTGAAATTGAATTT+GGG | + | chr2_2:48137503-48137522 | None:intergenic | 30.0% | |
| TCTGAGTGTGAAATTGAATT+TGG | + | chr2_2:48137504-48137523 | None:intergenic | 30.0% | |
| ! | TTGTTGGGTTTGAGAATTTT+GGG | + | chr2_2:48137549-48137568 | None:intergenic | 30.0% |
| ! | TTTGTTGGGTTTGAGAATTT+TGG | + | chr2_2:48137550-48137569 | None:intergenic | 30.0% |
| AAAATGGTTGTGAGAAAAGA+TGG | - | chr2_2:48137818-48137837 | Msa0254580:three_prime_UTR | 30.0% | |
| GTTCATGCAAGATTTAACAT+TGG | - | chr2_2:48137974-48137993 | Msa0254580:CDS | 30.0% | |
| ATGCAAGATTTAACATTGGT+TGG | - | chr2_2:48137978-48137997 | Msa0254580:CDS | 30.0% | |
| TTAACATAACCCAAAGCATA+AGG | + | chr2_2:48138013-48138032 | None:intergenic | 30.0% | |
| !!! | AGTTTTAAGAAAATGTGGAC+TGG | - | chr2_2:48138203-48138222 | Msa0254580:intron | 30.0% |
| GTAGGTTATGAAAGTTTACT+TGG | - | chr2_2:48138782-48138801 | Msa0254580:intron | 30.0% | |
| AAGTTCATAGTGTCCATTTA+GGG | + | chr2_2:48138911-48138930 | None:intergenic | 30.0% | |
| AAAGTTCATAGTGTCCATTT+AGG | + | chr2_2:48138912-48138931 | None:intergenic | 30.0% | |
| TAAATGGACACTATGAACTT+TGG | - | chr2_2:48138911-48138930 | Msa0254580:intron | 30.0% | |
| AAATGGACACTATGAACTTT+GGG | - | chr2_2:48138912-48138931 | Msa0254580:intron | 30.0% | |
| ! | ATTGTTATTCCAAGTTCACA+AGG | - | chr2_2:48138980-48138999 | Msa0254580:intron | 30.0% |
| TGAATCTAACAACATCTCAA+AGG | + | chr2_2:48139095-48139114 | None:intergenic | 30.0% | |
| TAGATTCATATGTGATGTGT+CGG | - | chr2_2:48139107-48139126 | Msa0254580:intron | 30.0% | |
| GAAACAAATAGATAAATGCG+GGG | + | chr2_2:48139196-48139215 | None:intergenic | 30.0% | |
| GAAATTTAGGAAAAAGGTCA+TGG | + | chr2_2:48139460-48139479 | None:intergenic | 30.0% | |
| TGAGCTGAAATTTAGGAAAA+AGG | + | chr2_2:48139466-48139485 | None:intergenic | 30.0% | |
| TTTCACATGAGCTGAAATTT+AGG | + | chr2_2:48139473-48139492 | None:intergenic | 30.0% | |
| !!! | TGTATTTGTTTTGGAAGGTT+AGG | - | chr2_2:48139563-48139582 | Msa0254580:intron | 30.0% |
| !!! | GTATTTGTTTTGGAAGGTTA+GGG | - | chr2_2:48139564-48139583 | Msa0254580:intron | 30.0% |
| !!! | TATTTGTTTTGGAAGGTTAG+GGG | - | chr2_2:48139565-48139584 | Msa0254580:intron | 30.0% |
| ATTTGGTATCTAAGAGTTAG+AGG | + | chr2_2:48139647-48139666 | None:intergenic | 30.0% | |
| ! | TTTTCACAATATCATGAGGT+AGG | - | chr2_2:48139771-48139790 | Msa0254580:intron | 30.0% |
| ! | TTCCTGGGTAATATTACTTT+TGG | + | chr2_2:48140140-48140159 | None:intergenic | 30.0% |
| GCTCATTTATTATCTTGAAC+TGG | + | chr2_2:48140205-48140224 | None:intergenic | 30.0% | |
| !!! | TAGGATCTTGTTTTGTATTG+AGG | - | chr2_2:48140234-48140253 | Msa0254580:intron | 30.0% |
| !!! | AAGACTACGGAAATTTTTTG+AGG | - | chr2_2:48140413-48140432 | Msa0254580:intron | 30.0% |
| ! | ACATTTTTCTCGCATATCTT+CGG | - | chr2_2:48140796-48140815 | Msa0254580:CDS | 30.0% |
| AAACTGACAGCTATTATATG+AGG | - | chr2_2:48140820-48140839 | Msa0254580:CDS | 30.0% | |
| TTTGTGAAATGATTTATGGC+TGG | + | chr2_2:48140853-48140872 | None:intergenic | 30.0% | |
| ! | CTATTCTTTGCAAACCATTT+TGG | - | chr2_2:48140874-48140893 | Msa0254580:CDS | 30.0% |
| AACCCAAAGAATAAATTGTC+TGG | - | chr2_2:48140947-48140966 | Msa0254580:CDS | 30.0% | |
| CTTCCAGACAATTTATTCTT+TGG | + | chr2_2:48140953-48140972 | None:intergenic | 30.0% | |
| AGAGTTGTAAGAAATGGAAT+AGG | - | chr2_2:48141003-48141022 | Msa0254580:CDS | 30.0% | |
| GAGTTGTAAGAAATGGAATA+GGG | - | chr2_2:48141004-48141023 | Msa0254580:CDS | 30.0% | |
| TCTCATTTAACTGCTGAAAA+AGG | - | chr2_2:48141098-48141117 | Msa0254580:CDS | 30.0% | |
| AATTCAGAAGAAATCCTACT+AGG | + | chr2_2:48141277-48141296 | None:intergenic | 30.0% | |
| ATGGAAATGGAAAATGGAAG+AGG | + | chr2_2:48137419-48137438 | None:intergenic | 35.0% | |
| ! | TCTTCCATTTTCCATTTCCA+TGG | - | chr2_2:48137418-48137437 | Msa0254580:three_prime_UTR | 35.0% |
| !!! | TTAGGGTTTTGGGATTGAAA+CGG | + | chr2_2:48137475-48137494 | None:intergenic | 35.0% |
| GAGTGTGAAATTGAATTTGG+GGG | + | chr2_2:48137501-48137520 | None:intergenic | 35.0% | |
| ! | TGTTGGGTTTGAGAATTTTG+GGG | + | chr2_2:48137548-48137567 | None:intergenic | 35.0% |
| !!! | GAGAGGTTTTTTGGTTTGTT+GGG | + | chr2_2:48137564-48137583 | None:intergenic | 35.0% |
| !!! | TGAGAGGTTTTTTGGTTTGT+TGG | + | chr2_2:48137565-48137584 | None:intergenic | 35.0% |
| !! | GGTTTTGTCTGACATTAGTT+CGG | + | chr2_2:48137600-48137619 | None:intergenic | 35.0% |
| ! | TTTCTCACTGATTACACCAT+CGG | + | chr2_2:48137801-48137820 | None:intergenic | 35.0% |
| TGGTGTAATCAGTGAGAAAA+TGG | - | chr2_2:48137802-48137821 | Msa0254580:three_prime_UTR | 35.0% | |
| GAGAAAAGATGGTAAGAGAA+AGG | - | chr2_2:48137829-48137848 | Msa0254580:three_prime_UTR | 35.0% | |
| AAAAGATGGTAAGAGAAAGG+TGG | - | chr2_2:48137832-48137851 | Msa0254580:three_prime_UTR | 35.0% | |
| GAAGGAGCTTTCAATTGAAA+TGG | - | chr2_2:48137892-48137911 | Msa0254580:three_prime_UTR | 35.0% | |
| ! | TTTGAGACTCCTTATGCTTT+GGG | - | chr2_2:48138001-48138020 | Msa0254580:CDS | 35.0% |
| !! | TGGACTGGTGATAAATTTGA+TGG | - | chr2_2:48138218-48138237 | Msa0254580:intron | 35.0% |
| !! | ACGGTTTTGTCCTTTGTAAA+AGG | - | chr2_2:48138349-48138368 | Msa0254580:intron | 35.0% |
| AATAATCACAATAGGGTGAC+CGG | + | chr2_2:48138491-48138510 | None:intergenic | 35.0% | |
| TGGGTCTATGAACATTTCTA+TGG | - | chr2_2:48138541-48138560 | Msa0254580:intron | 35.0% | |
| ATATGCATCAAACATGTAGG+AGG | - | chr2_2:48138587-48138606 | Msa0254580:intron | 35.0% | |
| AGTTCATAGTGTCCATTTAG+GGG | + | chr2_2:48138910-48138929 | None:intergenic | 35.0% | |
| AATGGACACTATGAACTTTG+GGG | - | chr2_2:48138913-48138932 | Msa0254580:intron | 35.0% | |
| ! | GGTTCTGATGAGATAGTATT+TGG | - | chr2_2:48139001-48139020 | Msa0254580:intron | 35.0% |
| TGATGAGATAGTATTTGGCA+AGG | - | chr2_2:48139006-48139025 | Msa0254580:intron | 35.0% | |
| GATGAGATAGTATTTGGCAA+GGG | - | chr2_2:48139007-48139026 | Msa0254580:intron | 35.0% | |
| TTCCTGAAAAATTTGAGTGC+TGG | - | chr2_2:48139048-48139067 | Msa0254580:intron | 35.0% | |
| TAACAGAAGACTCGATTACA+TGG | + | chr2_2:48139139-48139158 | None:intergenic | 35.0% | |
| GTGCGTAACATAATTGTCAT+TGG | - | chr2_2:48139396-48139415 | Msa0254580:intron | 35.0% | |
| ATTTCAGCTCATGTGAAACT+AGG | - | chr2_2:48139475-48139494 | Msa0254580:intron | 35.0% | |
| AGGAACACCAATAGTTTAAC+TGG | - | chr2_2:48139495-48139514 | Msa0254580:intron | 35.0% | |
| AGCAAGTCCAGTTAAACTAT+TGG | + | chr2_2:48139505-48139524 | None:intergenic | 35.0% | |
| GTCAAATTTAGCTAGAGATC+TGG | + | chr2_2:48139609-48139628 | None:intergenic | 35.0% | |
| ! | GCTTAAAAGTATACGTACAG+TGG | - | chr2_2:48139949-48139968 | Msa0254580:intron | 35.0% |
| GACCAAAAGTAATATTACCC+AGG | - | chr2_2:48140135-48140154 | Msa0254580:intron | 35.0% | |
| CAACTCCATGCTAAATGATT+CGG | + | chr2_2:48140163-48140182 | None:intergenic | 35.0% | |
| TGTATTGAGGATCTTATTCG+AGG | - | chr2_2:48140247-48140266 | Msa0254580:intron | 35.0% | |
| AGGTTCCAGAAAATACAGTA+AGG | - | chr2_2:48140433-48140452 | Msa0254580:intron | 35.0% | |
| ! | GTATGCCTTACTGTATTTTC+TGG | + | chr2_2:48140441-48140460 | None:intergenic | 35.0% |
| ! | TTACGATTTCATTTTCCTCC+AGG | - | chr2_2:48140518-48140537 | Msa0254580:intron | 35.0% |
| GGATTTGGAGATAACTATGA+AGG | - | chr2_2:48140617-48140636 | Msa0254580:CDS | 35.0% | |
| ! | CATTTTTCTCGCATATCTTC+GGG | - | chr2_2:48140797-48140816 | Msa0254580:CDS | 35.0% |
| AGAAAAGCAATCTCCCAAAA+TGG | + | chr2_2:48140891-48140910 | None:intergenic | 35.0% | |
| GCATCATCATTGGAAAACTT+AGG | + | chr2_2:48140925-48140944 | None:intergenic | 35.0% | |
| GAGTGAAGAGTTGTAAGAAA+TGG | - | chr2_2:48140997-48141016 | Msa0254580:CDS | 35.0% | |
| ATAGGGTCATCTTTATATGC+TGG | - | chr2_2:48141021-48141040 | Msa0254580:CDS | 35.0% | |
| ! | ATCTTTATATGCTGGTTGGA+TGG | - | chr2_2:48141029-48141048 | Msa0254580:CDS | 35.0% |
| !! | GTTTTTGAGAAAAGCAGCCA+TGG | + | chr2_2:48137438-48137457 | None:intergenic | 40.0% |
| !! | TTGGGGGAATTTAGGGTTTT+GGG | + | chr2_2:48137485-48137504 | None:intergenic | 40.0% |
| !! | TTTGGGGGAATTTAGGGTTT+TGG | + | chr2_2:48137486-48137505 | None:intergenic | 40.0% |
| !!! | GTTTGAGAATTTTGGGGTTG+GGG | + | chr2_2:48137542-48137561 | None:intergenic | 40.0% |
| !!! | GGTTTGAGAATTTTGGGGTT+GGG | + | chr2_2:48137543-48137562 | None:intergenic | 40.0% |
| ! | TTCTCACTGATTACACCATC+GGG | + | chr2_2:48137800-48137819 | None:intergenic | 40.0% |
| !! | GAGAGAACCATTTGTTGTGA+AGG | - | chr2_2:48137874-48137893 | Msa0254580:three_prime_UTR | 40.0% |
| GAAAGCTCCTTCACAACAAA+TGG | + | chr2_2:48137884-48137903 | None:intergenic | 40.0% | |
| ! | GTTTGAGACTCCTTATGCTT+TGG | - | chr2_2:48138000-48138019 | Msa0254580:CDS | 40.0% |
| !! | TTCTGAGGTATTGACCACTT+TGG | - | chr2_2:48138308-48138327 | Msa0254580:CDS | 40.0% |
| !! | TCTGAGGTATTGACCACTTT+GGG | - | chr2_2:48138309-48138328 | Msa0254580:CDS | 40.0% |
| TACAAAGGACAAAACCGTGA+AGG | + | chr2_2:48138347-48138366 | None:intergenic | 40.0% | |
| CCTCGATTCTCAAGAAATGT+GGG | - | chr2_2:48138421-48138440 | Msa0254580:intron | 40.0% | |
| CTCAAGAAATGTGGGTCTTA+AGG | - | chr2_2:48138429-48138448 | Msa0254580:intron | 40.0% | |
| !! | AGGAGGCATTTCTGTTTGAT+TGG | - | chr2_2:48138604-48138623 | Msa0254580:intron | 40.0% |
| ! | GCATTTCTGTTTGATTGGTC+AGG | - | chr2_2:48138609-48138628 | Msa0254580:intron | 40.0% |
| GTTCATAGTGTCCATTTAGG+GGG | + | chr2_2:48138909-48138928 | None:intergenic | 40.0% | |
| TCATCAGAACCTTGTGAACT+TGG | + | chr2_2:48138992-48139011 | None:intergenic | 40.0% | |
| AGTATTTGGCAAGGGTTCAT+AGG | - | chr2_2:48139015-48139034 | Msa0254580:intron | 40.0% | |
| ! | GACCAGCACTCAAATTTTTC+AGG | + | chr2_2:48139053-48139072 | None:intergenic | 40.0% |
| ATAAATGCGGGGTTGGATAA+AGG | + | chr2_2:48139185-48139204 | None:intergenic | 40.0% | |
| CAAATAGATAAATGCGGGGT+TGG | + | chr2_2:48139192-48139211 | None:intergenic | 40.0% | |
| !! | CATTGGTGTTTTACTCTTCC+TGG | - | chr2_2:48139413-48139432 | Msa0254580:intron | 40.0% |
| AATGACACTAACACATTGCC+AGG | + | chr2_2:48139434-48139453 | None:intergenic | 40.0% | |
| ! | TAGGGGTACAAGAGTCTAAA+AGG | - | chr2_2:48139582-48139601 | Msa0254580:intron | 40.0% |
| CATGCATGCAAACACAACTT+TGG | + | chr2_2:48139921-48139940 | None:intergenic | 40.0% | |
| !! | TATTACTTTTGGTCCCAGCT+TGG | + | chr2_2:48140129-48140148 | None:intergenic | 40.0% |
| !! | TGCTAAATGATTCGGTTCCT+GGG | + | chr2_2:48140155-48140174 | None:intergenic | 40.0% |
| !! | ATGCTAAATGATTCGGTTCC+TGG | + | chr2_2:48140156-48140175 | None:intergenic | 40.0% |
| AGGAACCGAATCATTTAGCA+TGG | - | chr2_2:48140155-48140174 | Msa0254580:intron | 40.0% | |
| ! | CATGAACTTTGATTCGCAGA+TGG | - | chr2_2:48140313-48140332 | Msa0254580:intron | 40.0% |
| ! | ATTTCCGTAGTCTTTTCGCA+GGG | + | chr2_2:48140407-48140426 | None:intergenic | 40.0% |
| ! | AATTTCCGTAGTCTTTTCGC+AGG | + | chr2_2:48140408-48140427 | None:intergenic | 40.0% |
| !! | ACAGTGAAGGTATTAGTGCA+TGG | + | chr2_2:48140463-48140482 | None:intergenic | 40.0% |
| !! | TTTGGGTTGAGCATCATCAT+TGG | + | chr2_2:48140935-48140954 | None:intergenic | 40.0% |
| ACTCACGTCAGAATTTCGAA+AGG | + | chr2_2:48140981-48141000 | None:intergenic | 40.0% | |
| GGTCATCTTTATATGCTGGT+TGG | - | chr2_2:48141025-48141044 | Msa0254580:CDS | 40.0% | |
| !! | TGGATGGTTTGTTTCTTCAC+AGG | - | chr2_2:48141045-48141064 | Msa0254580:CDS | 40.0% |
| TATTTCACACTGCAGCTGAT+TGG | + | chr2_2:48141173-48141192 | None:intergenic | 40.0% | |
| CGCGGTATAAGACGCAATTT+CGG | + | chr2_2:48137362-48137381 | None:intergenic | 45.0% | |
| GCAGCCATGGAAATGGAAAA+TGG | + | chr2_2:48137425-48137444 | None:intergenic | 45.0% | |
| GAGAAAAGCAGCCATGGAAA+TGG | + | chr2_2:48137432-48137451 | None:intergenic | 45.0% | |
| !!! | GGGTTTGAGAATTTTGGGGT+TGG | + | chr2_2:48137544-48137563 | None:intergenic | 45.0% |
| !!! | GAGAGTGCTGAGAGGTTTTT+TGG | + | chr2_2:48137573-48137592 | None:intergenic | 45.0% |
| ! | TTCGTCTTCGTCGATTGTTG+TGG | + | chr2_2:48137621-48137640 | None:intergenic | 45.0% |
| ATCGACGAAGACGAAGAATC+CGG | - | chr2_2:48137626-48137645 | Msa0254580:three_prime_UTR | 45.0% | |
| ACAAATCAACCACTTCCCGA+TGG | - | chr2_2:48137782-48137801 | Msa0254580:three_prime_UTR | 45.0% | |
| !! | CAACGAGGTGCCTTTTACAA+AGG | + | chr2_2:48138362-48138381 | None:intergenic | 45.0% |
| !! | CTTTGTAAAAGGCACCTCGT+TGG | - | chr2_2:48138360-48138379 | Msa0254580:intron | 45.0% |
| TTCTTGAGAATCGAGGCCAA+TGG | + | chr2_2:48138417-48138436 | None:intergenic | 45.0% | |
| GCCTCGATTCTCAAGAAATG+TGG | - | chr2_2:48138420-48138439 | Msa0254580:intron | 45.0% | |
| CCCACATTTCTTGAGAATCG+AGG | + | chr2_2:48138424-48138443 | None:intergenic | 45.0% | |
| ATGTGGGTCTTAAGGTGTAC+CGG | - | chr2_2:48138437-48138456 | Msa0254580:intron | 45.0% | |
| CTGGGAGAAGAGTTCACATT+TGG | + | chr2_2:48138637-48138656 | None:intergenic | 45.0% | |
| AGAGGACTTGAATTGCGGTT+TGG | - | chr2_2:48138657-48138676 | Msa0254580:intron | 45.0% | |
| GTATGCAAATGCCCCCTAAA+TGG | - | chr2_2:48138895-48138914 | Msa0254580:intron | 45.0% | |
| ! | GCATGACTAATTTTCTGCCC+CGG | - | chr2_2:48139278-48139297 | Msa0254580:intron | 45.0% |
| ! | TCGTCTCTTTTCTTCCAAGC+TGG | - | chr2_2:48140112-48140131 | Msa0254580:intron | 45.0% |
| ! | CGTCTCTTTTCTTCCAAGCT+GGG | - | chr2_2:48140113-48140132 | Msa0254580:intron | 45.0% |
| GAGTTCATTCCCATACACGT+TGG | - | chr2_2:48140275-48140294 | Msa0254580:intron | 45.0% | |
| GCAATGCATCCAACGTGTAT+GGG | + | chr2_2:48140287-48140306 | None:intergenic | 45.0% | |
| AGCAATGCATCCAACGTGTA+TGG | + | chr2_2:48140288-48140307 | None:intergenic | 45.0% | |
| ! | TTGATTCGCAGATGGCTATC+TGG | - | chr2_2:48140321-48140340 | Msa0254580:intron | 45.0% |
| ! | TGGAAGTGCATTGAAGCAAG+TGG | - | chr2_2:48140341-48140360 | Msa0254580:intron | 45.0% |
| TTGAAGCAAGTGGCAGTGTT+TGG | - | chr2_2:48140351-48140370 | Msa0254580:intron | 45.0% | |
| TCTTCCCTGCGAAAAGACTA+CGG | - | chr2_2:48140400-48140419 | Msa0254580:intron | 45.0% | |
| TGCATTTACTGCAAACCTGG+AGG | + | chr2_2:48140536-48140555 | None:intergenic | 45.0% | |
| GCATGCATTTACTGCAAACC+TGG | + | chr2_2:48140539-48140558 | None:intergenic | 45.0% | |
| AATGGCTCACACATCCTAGT+AGG | - | chr2_2:48141260-48141279 | Msa0254580:five_prime_UTR | 45.0% | |
| ! | GAGGAGAGTGATAGTGTGCT+AGG | + | chr2_2:48137400-48137419 | None:intergenic | 50.0% |
| !! | TGAAACGGTGTCGTGTGAGA+AGG | + | chr2_2:48137460-48137479 | None:intergenic | 50.0% |
| GGTTGGGGTGAGGATGAAAT+GGG | + | chr2_2:48137527-48137546 | None:intergenic | 50.0% | |
| !!! | AGAATTTTGGGGTTGGGGTG+AGG | + | chr2_2:48137537-48137556 | None:intergenic | 50.0% |
| GAAGACGAAGAATCCGGTGT+CGG | - | chr2_2:48137632-48137651 | Msa0254580:three_prime_UTR | 50.0% | |
| CTGATTACACCATCGGGAAG+TGG | + | chr2_2:48137794-48137813 | None:intergenic | 50.0% | |
| GTGGTCAATACCTCAGAACG+CGG | + | chr2_2:48138306-48138325 | None:intergenic | 50.0% | |
| !! | AAAGGCACCTCGTTGGATTG+AGG | - | chr2_2:48138367-48138386 | Msa0254580:intron | 50.0% |
| ACCTCGTTGGATTGAGGAGT+TGG | - | chr2_2:48138373-48138392 | Msa0254580:intron | 50.0% | |
| CCTCGTTGGATTGAGGAGTT+GGG | - | chr2_2:48138374-48138393 | Msa0254580:intron | 50.0% | |
| CTCGTTGGATTGAGGAGTTG+GGG | - | chr2_2:48138375-48138394 | Msa0254580:intron | 50.0% | |
| TGTGAACTCTTCTCCCAGAG+AGG | - | chr2_2:48138639-48138658 | Msa0254580:intron | 50.0% | |
| CCGCAATTCAAGTCCTCTCT+GGG | + | chr2_2:48138655-48138674 | None:intergenic | 50.0% | |
| CCCAGAGAGGACTTGAATTG+CGG | - | chr2_2:48138652-48138671 | Msa0254580:intron | 50.0% | |
| ACCGCAATTCAAGTCCTCTC+TGG | + | chr2_2:48138656-48138675 | None:intergenic | 50.0% | |
| ! | TGTTACTTGGGCGGCCAATT+TGG | - | chr2_2:48139307-48139326 | Msa0254580:intron | 50.0% |
| ACATCATTCCTGCTGACCGA+GGG | + | chr2_2:48140381-48140400 | None:intergenic | 50.0% | |
| TCATCAGACACTACCAGCTG+AGG | + | chr2_2:48140675-48140694 | None:intergenic | 50.0% | |
| AACCAGAAGCAGTCTCACTC+AGG | + | chr2_2:48140754-48140773 | None:intergenic | 50.0% | |
| TCACACTGCAGCTGATTGGT+TGG | + | chr2_2:48141169-48141188 | None:intergenic | 50.0% | |
| GGGTTGGGGTGAGGATGAAA+TGG | + | chr2_2:48137528-48137547 | None:intergenic | 55.0% | |
| !! | TCGGAGAAGAGAGTGCTGAG+AGG | + | chr2_2:48137581-48137600 | None:intergenic | 55.0% |
| TGGCGTACTTGAGGGTGGAA+TGG | + | chr2_2:48138281-48138300 | None:intergenic | 55.0% | |
| CAATACCTCAGAACGCGGTG+TGG | + | chr2_2:48138301-48138320 | None:intergenic | 55.0% | |
| GCTCACACAACGACCCAAAG+TGG | + | chr2_2:48138325-48138344 | None:intergenic | 55.0% | |
| GGTCGTTGTGTGAGCCTTCA+CGG | - | chr2_2:48138330-48138349 | Msa0254580:CDS | 55.0% | |
| CCCAACTCCTCAATCCAACG+AGG | + | chr2_2:48138377-48138396 | None:intergenic | 55.0% | |
| ! | ATTGCGGTTTGGCACGCTGT+TGG | - | chr2_2:48138668-48138687 | Msa0254580:intron | 55.0% |
| TTGAGCTGACTACTGCAGCG+TGG | + | chr2_2:48138947-48138966 | None:intergenic | 55.0% | |
| CCCAAGTAACAAGCACACCG+GGG | + | chr2_2:48139298-48139317 | None:intergenic | 55.0% | |
| ! | CCCCGGTGTGCTTGTTACTT+GGG | - | chr2_2:48139295-48139314 | Msa0254580:intron | 55.0% |
| GCCCAAGTAACAAGCACACC+GGG | + | chr2_2:48139299-48139318 | None:intergenic | 55.0% | |
| CGCCCAAGTAACAAGCACAC+CGG | + | chr2_2:48139300-48139319 | None:intergenic | 55.0% | |
| ! | CGGTGTGCTTGTTACTTGGG+CGG | - | chr2_2:48139298-48139317 | Msa0254580:intron | 55.0% |
| CATCATTCCTGCTGACCGAG+GGG | + | chr2_2:48140380-48140399 | None:intergenic | 55.0% | |
| GACATCATTCCTGCTGACCG+AGG | + | chr2_2:48140382-48140401 | None:intergenic | 55.0% | |
| !! | ACACTTGGTGCATCCTCAGC+TGG | - | chr2_2:48140659-48140678 | Msa0254580:CDS | 55.0% |
| CACCTGAGTGAGACTGCTTC+TGG | - | chr2_2:48140749-48140768 | Msa0254580:CDS | 55.0% | |
| AGGTCTCGATCAGTGCAGCG+CGG | + | chr2_2:48137380-48137399 | None:intergenic | 60.0% | |
| ACGCGGTGTGGCGTACTTGA+GGG | + | chr2_2:48138289-48138308 | None:intergenic | 60.0% | |
| AACGCGGTGTGGCGTACTTG+AGG | + | chr2_2:48138290-48138309 | None:intergenic | 60.0% | |
| ! | GCCCCGGTGTGCTTGTTACT+TGG | - | chr2_2:48139294-48139313 | Msa0254580:intron | 60.0% |
| GGCAGTGTTTGGTTGCCCCT+CGG | - | chr2_2:48140362-48140381 | Msa0254580:intron | 60.0% | |
| CAGCTCGATGTCGCCGACAC+CGG | + | chr2_2:48137648-48137667 | None:intergenic | 65.0% | |
| CGGTGTGGCGTACTTGAGGG+TGG | + | chr2_2:48138286-48138305 | None:intergenic | 65.0% | |
| GTACGCCACACCGCGTTCTG+AGG | - | chr2_2:48138293-48138312 | Msa0254580:CDS | 65.0% | |
| TTGGTTGCCCCTCGGTCAGC+AGG | - | chr2_2:48140370-48140389 | Msa0254580:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 48137359 | 48141324 | 48137359 | ID=Msa0254580;Name=Msa0254580 |
| chr2_2 | mRNA | 48137359 | 48141324 | 48137359 | ID=Msa0254580-mRNA-1;Parent=Msa0254580;Name=Msa0254580-mRNA-1;_AED=0.22;_eAED=0.22;_QI=78|1|1|1|1|1|3|569|324 |
| chr2_2 | exon | 48137359 | 48138143 | 48137359 | ID=Msa0254580-mRNA-1:exon:14536;Parent=Msa0254580-mRNA-1 |
| chr2_2 | exon | 48138234 | 48138351 | 48138234 | ID=Msa0254580-mRNA-1:exon:14535;Parent=Msa0254580-mRNA-1 |
| chr2_2 | exon | 48140606 | 48141324 | 48140606 | ID=Msa0254580-mRNA-1:exon:14534;Parent=Msa0254580-mRNA-1 |
| chr2_2 | five_prime_UTR | 48141247 | 48141324 | 48141247 | ID=Msa0254580-mRNA-1:five_prime_utr;Parent=Msa0254580-mRNA-1 |
| chr2_2 | CDS | 48140606 | 48141246 | 48140606 | ID=Msa0254580-mRNA-1:cds;Parent=Msa0254580-mRNA-1 |
| chr2_2 | CDS | 48138234 | 48138351 | 48138234 | ID=Msa0254580-mRNA-1:cds;Parent=Msa0254580-mRNA-1 |
| chr2_2 | CDS | 48137928 | 48138143 | 48137928 | ID=Msa0254580-mRNA-1:cds;Parent=Msa0254580-mRNA-1 |
| chr2_2 | three_prime_UTR | 48137359 | 48137927 | 48137359 | ID=Msa0254580-mRNA-1:three_prime_utr;Parent=Msa0254580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
