AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0016670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0016670 MtrunA17_Chr1g0168311 98.374 123 2 0 1 123 170 292 5.40e-86 252
Msa0016670 MtrunA17_Chr1g0186151 70.229 131 29 1 1 121 168 298 5.47e-55 174
Msa0016670 MtrunA17_Chr7g0262011 47.934 121 62 1 1 121 236 355 2.42e-33 119
Msa0016670 MtrunA17_Chr1g0190321 39.024 123 74 1 1 123 174 295 2.55e-25 97.1
Msa0016670 MtrunA17_Chr8g0391511 39.640 111 64 2 11 120 179 287 1.22e-17 76.3
Msa0016670 MtrunA17_Chr3g0110311 39.175 97 54 2 22 116 177 270 1.56e-12 62.4
Msa0016670 MtrunA17_Chr5g0434531 32.323 99 63 2 22 120 182 276 6.92e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0016670 AT1G04520.1 64.493 138 34 3 1 123 170 307 6.93e-51 163
Msa0016670 AT2G33330.1 63.359 131 39 1 1 122 172 302 3.14e-49 159
Msa0016670 AT3G04370.2 42.149 121 68 1 2 122 199 317 7.77e-29 107
Msa0016670 AT3G04370.1 42.149 121 68 1 2 122 200 318 8.33e-29 106
Msa0016670 AT5G43980.1 43.860 114 62 2 11 123 188 300 4.41e-27 102
Msa0016670 AT3G60720.3 37.000 100 52 2 23 119 189 280 1.43e-13 65.5
Msa0016670 AT3G60720.1 37.500 96 49 2 23 115 189 276 6.19e-13 63.9
Msa0016670 AT2G01660.3 38.298 94 53 2 22 112 185 276 1.44e-12 62.8
Msa0016670 AT2G01660.1 38.298 94 53 2 22 112 185 276 1.45e-12 62.8

Find 39 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTAGTGGATGAAAATTT+TGG 0.094651 1_1:+27727057 Msa0016670:three_prime_UTR
TTCATTGACTTTAATGCTTT+TGG 0.167176 1_1:+27727143 Msa0016670:three_prime_UTR
GCTTTATCAGCGATGGAAAA+TGG 0.195405 1_1:+27725807 None:intergenic
GAATGTGGCAACTCTATTTC+TGG 0.253750 1_1:+27725960 Msa0016670:CDS
TTGTAATTACATAGATATTC+TGG 0.265644 1_1:+27726995 Msa0016670:three_prime_UTR
CATAAGTGTTTCATTAGTTA+TGG 0.313486 1_1:+27725996 Msa0016670:CDS
TGTCTAGATGGAACTCCATT+AGG 0.322448 1_1:-27726026 None:intergenic
GCACAATGTGAAGGTGATAT+TGG 0.371110 1_1:+27725885 Msa0016670:CDS
CTTTATCAGCGATGGAAAAT+GGG 0.376842 1_1:+27725808 None:intergenic
CACATGGCTCAACAAGGATA+TGG 0.389422 1_1:-27727082 None:intergenic
AATGGGGTTGTTAGTGGTCA+TGG 0.418001 1_1:+27725825 Msa0016670:CDS
TATTATTTGACATTCCTTAG+TGG 0.425284 1_1:+27727044 Msa0016670:three_prime_UTR
AGTTATGGCTATTACCCTAA+TGG 0.430880 1_1:+27726011 Msa0016670:CDS
TAAATAGAGCTTGACTGGTT+TGG 0.437808 1_1:+27726935 Msa0016670:three_prime_UTR
GCAATGACAGGGCAAGATCC+AGG 0.447894 1_1:+27726605 Msa0016670:intron
TGTGGTAAATAGAGCTTGAC+TGG 0.450225 1_1:+27726930 Msa0016670:three_prime_UTR
GTCTAGATGGAACTCCATTA+GGG 0.462347 1_1:-27726025 None:intergenic
ATAATACTAGGAGGAATTGC+TGG 0.462780 1_1:+27726641 Msa0016670:CDS
GAATATGAAGAATGTCTAGA+TGG 0.470370 1_1:-27726038 None:intergenic
TTTGATGAATGAATGAAAGC+TGG 0.484954 1_1:+27726900 Msa0016670:three_prime_UTR
ATGGAAAATGGGGTTGTTAG+TGG 0.485449 1_1:+27725819 Msa0016670:CDS
GTTCTTACCTGAAGAAAATG+AGG 0.485674 1_1:-27726060 None:intergenic
TTATATTCTTGCTATTTGCT+AGG 0.498339 1_1:+27726678 Msa0016670:CDS
TATCTCGCGCAGATTATTGA+CGG 0.505401 1_1:+27726808 Msa0016670:intron
GGAAGTGCTAAATGTTCAGA+AGG 0.528755 1_1:+27727016 Msa0016670:three_prime_UTR
AAAACAGCTGCTATAATACT+AGG 0.532912 1_1:+27726629 Msa0016670:CDS
CATATCCTTGTTGAGCCATG+TGG 0.554260 1_1:+27727083 Msa0016670:three_prime_UTR
ACTAGGAGGAATTGCTGGAG+TGG 0.599765 1_1:+27726646 Msa0016670:CDS
GATATTGGTGACTCTGATTG+TGG 0.607730 1_1:+27725900 Msa0016670:CDS
CAATGACAGGGCAAGATCCA+GGG 0.608246 1_1:+27726606 Msa0016670:intron
CAAAGAGCTCAAGTTGAATG+TGG 0.620507 1_1:+27725945 Msa0016670:CDS
ATATCCTTGTTGAGCCATGT+GGG 0.628446 1_1:+27727084 Msa0016670:three_prime_UTR
ACAGCTGCTATAATACTAGG+AGG 0.630493 1_1:+27726632 Msa0016670:CDS
GCAGAAAATGATTTGTGACA+AGG 0.636991 1_1:+27726834 Msa0016670:three_prime_UTR
TTTATCAGCGATGGAAAATG+GGG 0.640047 1_1:+27725809 None:intergenic
GTCACCCACATGGCTCAACA+AGG 0.644411 1_1:-27727088 None:intergenic
AAATAACAGTGTCACCCACA+TGG 0.648812 1_1:-27727098 None:intergenic
GAAGTGCTAAATGTTCAGAA+GGG 0.686103 1_1:+27727017 Msa0016670:three_prime_UTR
AATTTGACAAAGAAACACAA+TGG 0.727029 1_1:+27726701 Msa0016670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATACAACAAACTATA+TGG + chr1_1:27725848-27725867 Msa0016670:CDS 15.0%
!!! TAAAATATCAATTTAGTTCA+TGG + chr1_1:27726256-27726275 Msa0016670:intron 15.0%
!!! TTTTTATACAACAAACTATA+TGG + chr1_1:27725848-27725867 Msa0016670:CDS 15.0%
!!! TAAAATATCAATTTAGTTCA+TGG + chr1_1:27726256-27726275 Msa0016670:intron 15.0%
!! TGATCAAAATTGTACAATTT+CGG - chr1_1:27726307-27726326 None:intergenic 20.0%
!!! ATTTTGAAATATTGATGATG+TGG + chr1_1:27726484-27726503 Msa0016670:intron 20.0%
!! TTGTAATTACATAGATATTC+TGG + chr1_1:27726995-27727014 Msa0016670:three_prime_UTR 20.0%
!! AAAAACTAGAAAATTGAAGA+GGG - chr1_1:27727125-27727144 None:intergenic 20.0%
!! TGATCAAAATTGTACAATTT+CGG - chr1_1:27726307-27726326 None:intergenic 20.0%
!!! ATTTTGAAATATTGATGATG+TGG + chr1_1:27726484-27726503 Msa0016670:intron 20.0%
!! TTGTAATTACATAGATATTC+TGG + chr1_1:27726995-27727014 Msa0016670:three_prime_UTR 20.0%
!! AAAAACTAGAAAATTGAAGA+GGG - chr1_1:27727125-27727144 None:intergenic 20.0%
!! CTATATGGCATTTTATGTTT+TGG + chr1_1:27725863-27725882 Msa0016670:CDS 25.0%
! CATAAGTGTTTCATTAGTTA+TGG + chr1_1:27725996-27726015 Msa0016670:CDS 25.0%
!!! AAAATAAGTGTCGATTTGTA+TGG + chr1_1:27726134-27726153 Msa0016670:intron 25.0%
! TAACCAACATTTGTCATAAA+GGG - chr1_1:27726192-27726211 None:intergenic 25.0%
! TTAACCAACATTTGTCATAA+AGG - chr1_1:27726193-27726212 None:intergenic 25.0%
! TGACATTAAGTTTGTAATCT+CGG + chr1_1:27726362-27726381 Msa0016670:intron 25.0%
!! TTGATAATAATTTCAAACCG+AGG + chr1_1:27726425-27726444 Msa0016670:intron 25.0%
! TGATAATAATTTCAAACCGA+GGG + chr1_1:27726426-27726445 Msa0016670:intron 25.0%
!! CTTAACCATTGGAAATTTTA+GGG - chr1_1:27726539-27726558 None:intergenic 25.0%
!!! TTATATTCTTGCTATTTGCT+AGG + chr1_1:27726678-27726697 Msa0016670:CDS 25.0%
! AATTTGACAAAGAAACACAA+TGG + chr1_1:27726701-27726720 Msa0016670:CDS 25.0%
! TATTATTTGACATTCCTTAG+TGG + chr1_1:27727044-27727063 Msa0016670:three_prime_UTR 25.0%
! GAAAAACTAGAAAATTGAAG+AGG - chr1_1:27727126-27727145 None:intergenic 25.0%
!!! TTCATTGACTTTAATGCTTT+TGG + chr1_1:27727143-27727162 Msa0016670:three_prime_UTR 25.0%
!! CTATATGGCATTTTATGTTT+TGG + chr1_1:27725863-27725882 Msa0016670:CDS 25.0%
! CATAAGTGTTTCATTAGTTA+TGG + chr1_1:27725996-27726015 Msa0016670:CDS 25.0%
!!! AAAATAAGTGTCGATTTGTA+TGG + chr1_1:27726134-27726153 Msa0016670:intron 25.0%
! TAACCAACATTTGTCATAAA+GGG - chr1_1:27726192-27726211 None:intergenic 25.0%
! TTAACCAACATTTGTCATAA+AGG - chr1_1:27726193-27726212 None:intergenic 25.0%
! TGACATTAAGTTTGTAATCT+CGG + chr1_1:27726362-27726381 Msa0016670:intron 25.0%
!! TTGATAATAATTTCAAACCG+AGG + chr1_1:27726425-27726444 Msa0016670:intron 25.0%
! TGATAATAATTTCAAACCGA+GGG + chr1_1:27726426-27726445 Msa0016670:intron 25.0%
!! CTTAACCATTGGAAATTTTA+GGG - chr1_1:27726539-27726558 None:intergenic 25.0%
!!! TTATATTCTTGCTATTTGCT+AGG + chr1_1:27726678-27726697 Msa0016670:CDS 25.0%
! AATTTGACAAAGAAACACAA+TGG + chr1_1:27726701-27726720 Msa0016670:CDS 25.0%
! TATTATTTGACATTCCTTAG+TGG + chr1_1:27727044-27727063 Msa0016670:three_prime_UTR 25.0%
! GAAAAACTAGAAAATTGAAG+AGG - chr1_1:27727126-27727145 None:intergenic 25.0%
!!! TTCATTGACTTTAATGCTTT+TGG + chr1_1:27727143-27727162 Msa0016670:three_prime_UTR 25.0%
GAATATGAAGAATGTCTAGA+TGG - chr1_1:27726041-27726060 None:intergenic 30.0%
! TCATATTCCTCATTTTCTTC+AGG + chr1_1:27726053-27726072 Msa0016670:CDS 30.0%
!!! CAAATTTTGGTTCAATCTGT+AGG - chr1_1:27726098-27726117 None:intergenic 30.0%
CTACAGATTGAACCAAAATT+TGG + chr1_1:27726096-27726115 Msa0016670:intron 30.0%
!! ATTGAACCAAAATTTGGTGT+TGG + chr1_1:27726102-27726121 Msa0016670:intron 30.0%
!! TTGAACCAAAATTTGGTGTT+GGG + chr1_1:27726103-27726122 Msa0016670:intron 30.0%
TACAATTTCGGTGATCAATT+TGG - chr1_1:27726295-27726314 None:intergenic 30.0%
! CCTTAACCATTGGAAATTTT+AGG - chr1_1:27726540-27726559 None:intergenic 30.0%
CCTAAAATTTCCAATGGTTA+AGG + chr1_1:27726537-27726556 Msa0016670:intron 30.0%
ATTTCCAATGGTTAAGGAAA+AGG + chr1_1:27726543-27726562 Msa0016670:intron 30.0%
!! TATTGATTTGATGCAATGAC+AGG + chr1_1:27726593-27726612 Msa0016670:intron 30.0%
!! ATTGATTTGATGCAATGACA+GGG + chr1_1:27726594-27726613 Msa0016670:intron 30.0%
AAAACAGCTGCTATAATACT+AGG + chr1_1:27726629-27726648 Msa0016670:CDS 30.0%
TTTGATGAATGAATGAAAGC+TGG + chr1_1:27726900-27726919 Msa0016670:three_prime_UTR 30.0%
! ATGAAAGCTGGAAATTTTTG+TGG + chr1_1:27726912-27726931 Msa0016670:three_prime_UTR 30.0%
!! TCCTTAGTGGATGAAAATTT+TGG + chr1_1:27727057-27727076 Msa0016670:three_prime_UTR 30.0%
!! CCTTAGTGGATGAAAATTTT+GGG + chr1_1:27727058-27727077 Msa0016670:three_prime_UTR 30.0%
!! CTTAGTGGATGAAAATTTTG+GGG + chr1_1:27727059-27727078 Msa0016670:three_prime_UTR 30.0%
!!! TTGTTTTTGAGCAATGCTTT+TGG + chr1_1:27727173-27727192 Msa0016670:three_prime_UTR 30.0%
GAATATGAAGAATGTCTAGA+TGG - chr1_1:27726041-27726060 None:intergenic 30.0%
! TCATATTCCTCATTTTCTTC+AGG + chr1_1:27726053-27726072 Msa0016670:CDS 30.0%
!!! CAAATTTTGGTTCAATCTGT+AGG - chr1_1:27726098-27726117 None:intergenic 30.0%
CTACAGATTGAACCAAAATT+TGG + chr1_1:27726096-27726115 Msa0016670:intron 30.0%
!! ATTGAACCAAAATTTGGTGT+TGG + chr1_1:27726102-27726121 Msa0016670:intron 30.0%
!! TTGAACCAAAATTTGGTGTT+GGG + chr1_1:27726103-27726122 Msa0016670:intron 30.0%
TACAATTTCGGTGATCAATT+TGG - chr1_1:27726295-27726314 None:intergenic 30.0%
! CCTTAACCATTGGAAATTTT+AGG - chr1_1:27726540-27726559 None:intergenic 30.0%
CCTAAAATTTCCAATGGTTA+AGG + chr1_1:27726537-27726556 Msa0016670:intron 30.0%
ATTTCCAATGGTTAAGGAAA+AGG + chr1_1:27726543-27726562 Msa0016670:intron 30.0%
!! TATTGATTTGATGCAATGAC+AGG + chr1_1:27726593-27726612 Msa0016670:intron 30.0%
!! ATTGATTTGATGCAATGACA+GGG + chr1_1:27726594-27726613 Msa0016670:intron 30.0%
AAAACAGCTGCTATAATACT+AGG + chr1_1:27726629-27726648 Msa0016670:CDS 30.0%
TTTGATGAATGAATGAAAGC+TGG + chr1_1:27726900-27726919 Msa0016670:three_prime_UTR 30.0%
! ATGAAAGCTGGAAATTTTTG+TGG + chr1_1:27726912-27726931 Msa0016670:three_prime_UTR 30.0%
!! TCCTTAGTGGATGAAAATTT+TGG + chr1_1:27727057-27727076 Msa0016670:three_prime_UTR 30.0%
!! CCTTAGTGGATGAAAATTTT+GGG + chr1_1:27727058-27727077 Msa0016670:three_prime_UTR 30.0%
!! CTTAGTGGATGAAAATTTTG+GGG + chr1_1:27727059-27727078 Msa0016670:three_prime_UTR 30.0%
!!! TTGTTTTTGAGCAATGCTTT+TGG + chr1_1:27727173-27727192 Msa0016670:three_prime_UTR 30.0%
!!! TATGTTTTGGCACAATGTGA+AGG + chr1_1:27725876-27725895 Msa0016670:CDS 35.0%
AGTTATGGCTATTACCCTAA+TGG + chr1_1:27726011-27726030 Msa0016670:CDS 35.0%
GTTCTTACCTGAAGAAAATG+AGG - chr1_1:27726063-27726082 None:intergenic 35.0%
! CTTTTCCCAACACCAAATTT+TGG - chr1_1:27726111-27726130 None:intergenic 35.0%
!! CAAAATTTGGTGTTGGGAAA+AGG + chr1_1:27726109-27726128 Msa0016670:intron 35.0%
AACATTTGTCATAAAGGGCA+AGG - chr1_1:27726187-27726206 None:intergenic 35.0%
TTGCCCTTTATGACAAATGT+TGG + chr1_1:27726186-27726205 Msa0016670:intron 35.0%
! TTTTGATCAAATTCGTCGCT+TGG + chr1_1:27726318-27726337 Msa0016670:intron 35.0%
!! GTCGCTTGGTTGATATTTTT+AGG + chr1_1:27726332-27726351 Msa0016670:intron 35.0%
! GAGATGAATTTGAAACCAAG+TGG + chr1_1:27726384-27726403 Msa0016670:intron 35.0%
! TTTTAATCGAGTTTGTCCCT+CGG - chr1_1:27726445-27726464 None:intergenic 35.0%
! AGTACCTTTTCCTTAACCAT+TGG - chr1_1:27726550-27726569 None:intergenic 35.0%
ATAATACTAGGAGGAATTGC+TGG + chr1_1:27726641-27726660 Msa0016670:CDS 35.0%
! GCAGAAAATGATTTGTGACA+AGG + chr1_1:27726834-27726853 Msa0016670:three_prime_UTR 35.0%
! TAAATAGAGCTTGACTGGTT+TGG + chr1_1:27726935-27726954 Msa0016670:three_prime_UTR 35.0%
! GAAGTGCTAAATGTTCAGAA+GGG + chr1_1:27727017-27727036 Msa0016670:three_prime_UTR 35.0%
! CCCAAAATTTTCATCCACTA+AGG - chr1_1:27727061-27727080 None:intergenic 35.0%
!!! TATGTTTTGGCACAATGTGA+AGG + chr1_1:27725876-27725895 Msa0016670:CDS 35.0%
AGTTATGGCTATTACCCTAA+TGG + chr1_1:27726011-27726030 Msa0016670:CDS 35.0%
GTTCTTACCTGAAGAAAATG+AGG - chr1_1:27726063-27726082 None:intergenic 35.0%
! CTTTTCCCAACACCAAATTT+TGG - chr1_1:27726111-27726130 None:intergenic 35.0%
!! CAAAATTTGGTGTTGGGAAA+AGG + chr1_1:27726109-27726128 Msa0016670:intron 35.0%
AACATTTGTCATAAAGGGCA+AGG - chr1_1:27726187-27726206 None:intergenic 35.0%
TTGCCCTTTATGACAAATGT+TGG + chr1_1:27726186-27726205 Msa0016670:intron 35.0%
! TTTTGATCAAATTCGTCGCT+TGG + chr1_1:27726318-27726337 Msa0016670:intron 35.0%
!! GTCGCTTGGTTGATATTTTT+AGG + chr1_1:27726332-27726351 Msa0016670:intron 35.0%
! GAGATGAATTTGAAACCAAG+TGG + chr1_1:27726384-27726403 Msa0016670:intron 35.0%
! TTTTAATCGAGTTTGTCCCT+CGG - chr1_1:27726445-27726464 None:intergenic 35.0%
! AGTACCTTTTCCTTAACCAT+TGG - chr1_1:27726550-27726569 None:intergenic 35.0%
ATAATACTAGGAGGAATTGC+TGG + chr1_1:27726641-27726660 Msa0016670:CDS 35.0%
! GCAGAAAATGATTTGTGACA+AGG + chr1_1:27726834-27726853 Msa0016670:three_prime_UTR 35.0%
! TAAATAGAGCTTGACTGGTT+TGG + chr1_1:27726935-27726954 Msa0016670:three_prime_UTR 35.0%
! GAAGTGCTAAATGTTCAGAA+GGG + chr1_1:27727017-27727036 Msa0016670:three_prime_UTR 35.0%
! CCCAAAATTTTCATCCACTA+AGG - chr1_1:27727061-27727080 None:intergenic 35.0%
ATGGAAAATGGGGTTGTTAG+TGG + chr1_1:27725819-27725838 Msa0016670:CDS 40.0%
GCACAATGTGAAGGTGATAT+TGG + chr1_1:27725885-27725904 Msa0016670:CDS 40.0%
! GATATTGGTGACTCTGATTG+TGG + chr1_1:27725900-27725919 Msa0016670:CDS 40.0%
!! CAAAGAGCTCAAGTTGAATG+TGG + chr1_1:27725945-27725964 Msa0016670:CDS 40.0%
GAATGTGGCAACTCTATTTC+TGG + chr1_1:27725960-27725979 Msa0016670:CDS 40.0%
GTCTAGATGGAACTCCATTA+GGG - chr1_1:27726028-27726047 None:intergenic 40.0%
TGTCTAGATGGAACTCCATT+AGG - chr1_1:27726029-27726048 None:intergenic 40.0%
CTGCTCCCTAAAATTTCCAA+TGG + chr1_1:27726531-27726550 Msa0016670:intron 40.0%
!! ATTATAGCAGCTGTTTTCCC+TGG - chr1_1:27726626-27726645 None:intergenic 40.0%
ACAGCTGCTATAATACTAGG+AGG + chr1_1:27726632-27726651 Msa0016670:CDS 40.0%
TATCTCGCGCAGATTATTGA+CGG + chr1_1:27726808-27726827 Msa0016670:intron 40.0%
TGTGGTAAATAGAGCTTGAC+TGG + chr1_1:27726930-27726949 Msa0016670:three_prime_UTR 40.0%
!! GGAAGTGCTAAATGTTCAGA+AGG + chr1_1:27727016-27727035 Msa0016670:three_prime_UTR 40.0%
ATATCCTTGTTGAGCCATGT+GGG + chr1_1:27727084-27727103 Msa0016670:three_prime_UTR 40.0%
AAATAACAGTGTCACCCACA+TGG - chr1_1:27727101-27727120 None:intergenic 40.0%
! ACTAACAACCCCATTTTCCA+TGG - chr1_1:27725820-27725839 None:intergenic 40.0%
ATGGAAAATGGGGTTGTTAG+TGG + chr1_1:27725819-27725838 Msa0016670:CDS 40.0%
GCACAATGTGAAGGTGATAT+TGG + chr1_1:27725885-27725904 Msa0016670:CDS 40.0%
! GATATTGGTGACTCTGATTG+TGG + chr1_1:27725900-27725919 Msa0016670:CDS 40.0%
!! CAAAGAGCTCAAGTTGAATG+TGG + chr1_1:27725945-27725964 Msa0016670:CDS 40.0%
GAATGTGGCAACTCTATTTC+TGG + chr1_1:27725960-27725979 Msa0016670:CDS 40.0%
GTCTAGATGGAACTCCATTA+GGG - chr1_1:27726028-27726047 None:intergenic 40.0%
TGTCTAGATGGAACTCCATT+AGG - chr1_1:27726029-27726048 None:intergenic 40.0%
CTGCTCCCTAAAATTTCCAA+TGG + chr1_1:27726531-27726550 Msa0016670:intron 40.0%
!! ATTATAGCAGCTGTTTTCCC+TGG - chr1_1:27726626-27726645 None:intergenic 40.0%
ACAGCTGCTATAATACTAGG+AGG + chr1_1:27726632-27726651 Msa0016670:CDS 40.0%
TATCTCGCGCAGATTATTGA+CGG + chr1_1:27726808-27726827 Msa0016670:intron 40.0%
TGTGGTAAATAGAGCTTGAC+TGG + chr1_1:27726930-27726949 Msa0016670:three_prime_UTR 40.0%
!! GGAAGTGCTAAATGTTCAGA+AGG + chr1_1:27727016-27727035 Msa0016670:three_prime_UTR 40.0%
ATATCCTTGTTGAGCCATGT+GGG + chr1_1:27727084-27727103 Msa0016670:three_prime_UTR 40.0%
AAATAACAGTGTCACCCACA+TGG - chr1_1:27727101-27727120 None:intergenic 40.0%
AATGGGGTTGTTAGTGGTCA+TGG + chr1_1:27725825-27725844 Msa0016670:CDS 45.0%
CACATGGCTCAACAAGGATA+TGG - chr1_1:27727085-27727104 None:intergenic 45.0%
CATATCCTTGTTGAGCCATG+TGG + chr1_1:27727083-27727102 Msa0016670:three_prime_UTR 45.0%
AATGGGGTTGTTAGTGGTCA+TGG + chr1_1:27725825-27725844 Msa0016670:CDS 45.0%
CACATGGCTCAACAAGGATA+TGG - chr1_1:27727085-27727104 None:intergenic 45.0%
CATATCCTTGTTGAGCCATG+TGG + chr1_1:27727083-27727102 Msa0016670:three_prime_UTR 45.0%
CATCGCAGACAACATCCACT+TGG - chr1_1:27726402-27726421 None:intergenic 50.0%
CAATGACAGGGCAAGATCCA+GGG + chr1_1:27726606-27726625 Msa0016670:intron 50.0%
ACTAGGAGGAATTGCTGGAG+TGG + chr1_1:27726646-27726665 Msa0016670:CDS 50.0%
CATCGCAGACAACATCCACT+TGG - chr1_1:27726402-27726421 None:intergenic 50.0%
CAATGACAGGGCAAGATCCA+GGG + chr1_1:27726606-27726625 Msa0016670:intron 50.0%
ACTAGGAGGAATTGCTGGAG+TGG + chr1_1:27726646-27726665 Msa0016670:CDS 50.0%
GCAATGACAGGGCAAGATCC+AGG + chr1_1:27726605-27726624 Msa0016670:intron 55.0%
GTCACCCACATGGCTCAACA+AGG - chr1_1:27727091-27727110 None:intergenic 55.0%
GCAATGACAGGGCAAGATCC+AGG + chr1_1:27726605-27726624 Msa0016670:intron 55.0%
GTCACCCACATGGCTCAACA+AGG - chr1_1:27727091-27727110 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 27725819 27727217 27725819 ID=Msa0016670;Name=Msa0016670
chr1_1 mRNA 27725819 27727217 27725819 ID=Msa0016670-mRNA-1;Parent=Msa0016670;Name=Msa0016670-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.5|0.33|1|0.5|0.66|3|390|123
chr1_1 exon 27725819 27726074 27725819 ID=Msa0016670-mRNA-1:exon:9302;Parent=Msa0016670-mRNA-1
chr1_1 exon 27726615 27726722 27726615 ID=Msa0016670-mRNA-1:exon:9303;Parent=Msa0016670-mRNA-1
chr1_1 exon 27726820 27727217 27726820 ID=Msa0016670-mRNA-1:exon:9304;Parent=Msa0016670-mRNA-1
chr1_1 CDS 27725819 27726074 27725819 ID=Msa0016670-mRNA-1:cds;Parent=Msa0016670-mRNA-1
chr1_1 CDS 27726615 27726722 27726615 ID=Msa0016670-mRNA-1:cds;Parent=Msa0016670-mRNA-1
chr1_1 CDS 27726820 27726827 27726820 ID=Msa0016670-mRNA-1:cds;Parent=Msa0016670-mRNA-1
chr1_1 three_prime_UTR 27726828 27727217 27726828 ID=Msa0016670-mRNA-1:three_prime_utr;Parent=Msa0016670-mRNA-1
Gene Sequence

>Msa0016670

ATGGAAAATGGGGTTGTTAGTGGTCATGGTTTTTATACAACAAACTATATGGCATTTTATGTTTTGGCACAATGTGAAGGTGATATTGGTGACTCTGATTGTGGACAGTGTGTAAAAACTGCTGTTCAAAGAGCTCAAGTTGAATGTGGCAACTCTATTTCTGGTGAAATCTTTTTGCATAAGTGTTTCATTAGTTATGGCTATTACCCTAATGGAGTTCCATCTAGACATTCTTCATATTCCTCATTTTCTTCAGGGCAAGATCCAGGGAAAACAGCTGCTATAATACTAGGAGGAATTGCTGGAGTGGCTTTTCTAGTTATATTCTTGCTATTTGCTAGGAATTTGACAAAGAAACACAATGATTATTGA

Protein sequence

>Msa0016670

MENGVVSGHGFYTTNYMAFYVLAQCEGDIGDSDCGQCVKTAVQRAQVECGNSISGEIFLHKCFISYGYYPNGVPSRHSSYSSFSSGQDPGKTAAIILGGIAGVAFLVIFLLFARNLTKKHNDY*