Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256710 | XP_039686545.1 | 93.860 | 114 | 4 | 1 | 1 | 111 | 1 | 114 | 7.10e-65 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256710 | sp|Q9ZPW9|NLTP8_ARATH | 53.211 | 109 | 48 | 1 | 6 | 111 | 7 | 115 | 6.32e-34 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256710 | G7IQQ8 | 93.860 | 114 | 4 | 1 | 1 | 111 | 1 | 114 | 3.39e-65 | 202 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0210610 | Msa0256710 | 0.848069 | 7.751266e-60 | -8.615850e-47 |
| Msa0256710 | Msa0289960 | 0.875908 | 2.125733e-68 | -8.615850e-47 |
| Msa0256710 | Msa0327760 | 0.859508 | 3.939545e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256710 | MtrunA17_Chr2g0309241 | 93.860 | 114 | 4 | 1 | 1 | 111 | 1 | 114 | 6.53e-69 | 202 |
| Msa0256710 | MtrunA17_Chr4g0012951 | 43.478 | 115 | 60 | 3 | 1 | 111 | 1 | 114 | 7.10e-24 | 88.2 |
| Msa0256710 | MtrunA17_Chr4g0013001 | 40.000 | 115 | 64 | 3 | 1 | 111 | 1 | 114 | 9.85e-21 | 80.1 |
| Msa0256710 | MtrunA17_Chr4g0012961 | 40.000 | 115 | 64 | 3 | 1 | 111 | 1 | 114 | 1.13e-20 | 80.1 |
| Msa0256710 | MtrunA17_Chr4g0012991 | 40.000 | 115 | 64 | 3 | 1 | 111 | 56 | 169 | 4.86e-20 | 80.1 |
| Msa0256710 | MtrunA17_Chr4g0012891 | 35.537 | 121 | 69 | 3 | 1 | 112 | 6 | 126 | 9.33e-19 | 75.5 |
| Msa0256710 | MtrunA17_Chr4g0013261 | 37.931 | 116 | 66 | 4 | 1 | 111 | 1 | 115 | 5.53e-18 | 73.2 |
| Msa0256710 | MtrunA17_Chr4g0013251 | 38.793 | 116 | 65 | 4 | 1 | 111 | 1 | 115 | 1.76e-17 | 72.0 |
| Msa0256710 | MtrunA17_Chr4g0013211 | 36.283 | 113 | 63 | 5 | 6 | 111 | 4 | 114 | 4.76e-16 | 68.2 |
| Msa0256710 | MtrunA17_Chr7g0244841 | 33.333 | 105 | 67 | 1 | 10 | 111 | 13 | 117 | 1.29e-15 | 67.4 |
| Msa0256710 | MtrunA17_Chr7g0244821 | 32.727 | 110 | 74 | 0 | 1 | 110 | 7 | 116 | 2.87e-15 | 66.6 |
| Msa0256710 | MtrunA17_Chr7g0244831 | 30.000 | 110 | 73 | 2 | 6 | 111 | 9 | 118 | 9.48e-15 | 65.1 |
| Msa0256710 | MtrunA17_Chr4g0012901 | 28.704 | 108 | 73 | 2 | 8 | 111 | 13 | 120 | 2.79e-14 | 63.9 |
| Msa0256710 | MtrunA17_Chr7g0233431 | 32.456 | 114 | 70 | 3 | 1 | 111 | 21 | 130 | 6.80e-14 | 63.2 |
| Msa0256710 | MtrunA17_Chr7g0244691 | 31.429 | 105 | 68 | 2 | 11 | 111 | 14 | 118 | 2.88e-13 | 61.2 |
| Msa0256710 | MtrunA17_Chr7g0244641 | 30.631 | 111 | 72 | 3 | 6 | 111 | 9 | 119 | 1.07e-12 | 59.7 |
| Msa0256710 | MtrunA17_Chr7g0244811 | 30.631 | 111 | 75 | 2 | 1 | 109 | 8 | 118 | 3.16e-12 | 58.5 |
| Msa0256710 | MtrunA17_Chr7g0244681 | 30.000 | 110 | 76 | 1 | 1 | 109 | 7 | 116 | 6.55e-12 | 57.8 |
| Msa0256710 | MtrunA17_Chr1g0165761 | 32.432 | 111 | 74 | 1 | 2 | 111 | 8 | 118 | 7.62e-12 | 57.4 |
| Msa0256710 | MtrunA17_Chr7g0244671 | 31.429 | 105 | 67 | 3 | 10 | 109 | 13 | 117 | 6.26e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256710 | AT2G18370.1 | 53.211 | 109 | 48 | 1 | 6 | 111 | 7 | 115 | 6.43e-35 | 116 |
| Msa0256710 | AT5G59320.1 | 40.870 | 115 | 63 | 3 | 1 | 111 | 1 | 114 | 2.30e-21 | 82.0 |
| Msa0256710 | AT5G59310.1 | 35.965 | 114 | 67 | 3 | 1 | 111 | 1 | 111 | 2.59e-19 | 77.0 |
| Msa0256710 | AT3G51590.1 | 37.143 | 105 | 61 | 3 | 11 | 111 | 12 | 115 | 9.58e-17 | 70.5 |
| Msa0256710 | AT5G01870.1 | 39.806 | 103 | 54 | 4 | 15 | 111 | 15 | 115 | 3.09e-16 | 68.9 |
| Msa0256710 | AT3G08770.1 | 37.500 | 96 | 53 | 3 | 22 | 111 | 18 | 112 | 1.18e-14 | 65.1 |
| Msa0256710 | AT3G08770.2 | 38.710 | 93 | 50 | 3 | 22 | 108 | 18 | 109 | 2.09e-14 | 64.3 |
| Msa0256710 | AT2G38540.1 | 36.458 | 96 | 55 | 3 | 21 | 111 | 23 | 117 | 2.08e-13 | 62.0 |
| Msa0256710 | AT2G15050.3 | 31.481 | 108 | 65 | 4 | 3 | 101 | 2 | 109 | 3.58e-13 | 61.2 |
| Msa0256710 | AT2G15050.2 | 31.481 | 108 | 65 | 4 | 3 | 101 | 2 | 109 | 3.96e-13 | 61.2 |
| Msa0256710 | AT2G15050.1 | 31.481 | 108 | 65 | 4 | 3 | 101 | 2 | 109 | 4.39e-13 | 61.2 |
| Msa0256710 | AT3G51600.1 | 33.962 | 106 | 64 | 3 | 11 | 111 | 13 | 117 | 5.25e-13 | 60.8 |
| Msa0256710 | AT4G33355.2 | 34.951 | 103 | 61 | 4 | 11 | 109 | 16 | 116 | 5.42e-13 | 60.8 |
| Msa0256710 | AT4G33355.1 | 34.286 | 105 | 63 | 4 | 11 | 111 | 16 | 118 | 5.85e-13 | 60.8 |
Find 22 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTAAAGAAGATTTCA+TGG | 0.285915 | 2_2:-51693015 | None:intergenic |
| CAATTGGCTCAGGCTCTTGC+AGG | 0.325545 | 2_2:+51693278 | Msa0256710:CDS |
| GAAACCTTGTGTGAGCTATT+TGG | 0.326436 | 2_2:+51693118 | Msa0256710:CDS |
| TACTTGGAACAATCAGCATC+TGG | 0.351088 | 2_2:-51693335 | None:intergenic |
| CCACCAGCTGCATGTTGCTC+TGG | 0.412892 | 2_2:+51693158 | Msa0256710:CDS |
| AGCTATTTGGTCAGTGGAAG+TGG | 0.469665 | 2_2:+51693131 | Msa0256710:CDS |
| TATTAAAATAAACTCACAAT+TGG | 0.472842 | 2_2:+51693262 | Msa0256710:CDS |
| CTTTGTTGCTTCAAATTCAG+AGG | 0.497380 | 2_2:+51693061 | Msa0256710:CDS |
| AATAAACTCACAATTGGCTC+AGG | 0.514463 | 2_2:+51693268 | Msa0256710:CDS |
| ACTTGGAACAATCAGCATCT+GGG | 0.519962 | 2_2:-51693334 | None:intergenic |
| GCTCCAGAGCAACATGCAGC+TGG | 0.542595 | 2_2:-51693161 | None:intergenic |
| CAGGCTCTTGCAGGGAACTG+TGG | 0.566184 | 2_2:+51693287 | Msa0256710:CDS |
| AGCATCTGGGGAGATACTGA+TGG | 0.572323 | 2_2:-51693321 | None:intergenic |
| GCATCTGGGGAGATACTGAT+GGG | 0.583176 | 2_2:-51693320 | None:intergenic |
| AATTGGCTCAGGCTCTTGCA+GGG | 0.601314 | 2_2:+51693279 | Msa0256710:CDS |
| CTTGGAACAATCAGCATCTG+GGG | 0.606095 | 2_2:-51693333 | None:intergenic |
| CCAGAGCAACATGCAGCTGG+TGG | 0.627457 | 2_2:-51693158 | None:intergenic |
| ATCAGCTGTATCAACATCTG+AGG | 0.627591 | 2_2:+51693196 | Msa0256710:CDS |
| TGTGTGAGCTATTTGGTCAG+TGG | 0.644010 | 2_2:+51693125 | Msa0256710:CDS |
| CTGACCAAATAGCTCACACA+AGG | 0.667347 | 2_2:-51693122 | None:intergenic |
| ATCTGGGGAGATACTGATGG+GGG | 0.675132 | 2_2:-51693318 | None:intergenic |
| CATCTGGGGAGATACTGATG+GGG | 0.712150 | 2_2:-51693319 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAATAAGTAAATAA+AGG | - | chr2_2:51693713-51693732 | None:intergenic | 10.0% |
| !! | AAAGATAAATAAGTAAATAA+AGG | - | chr2_2:51693713-51693732 | None:intergenic | 10.0% |
| !! | TATTAAAATAAACTCACAAT+TGG | + | chr2_2:51693262-51693281 | Msa0256710:CDS | 15.0% |
| !!! | TTTAATGTATGATTTTTACT+TGG | - | chr2_2:51693354-51693373 | None:intergenic | 15.0% |
| !!! | TGAAACAACTTTTTTTTTAT+AGG | + | chr2_2:51693500-51693519 | Msa0256710:intron | 15.0% |
| !! | TTCATTAATCAATTTGATAT+TGG | - | chr2_2:51693607-51693626 | None:intergenic | 15.0% |
| !! | TTTGTAAAGCAAAATATAAA+AGG | - | chr2_2:51693649-51693668 | None:intergenic | 15.0% |
| !! | TATTAAAATAAACTCACAAT+TGG | + | chr2_2:51693262-51693281 | Msa0256710:CDS | 15.0% |
| !!! | TTTAATGTATGATTTTTACT+TGG | - | chr2_2:51693354-51693373 | None:intergenic | 15.0% |
| !!! | TGAAACAACTTTTTTTTTAT+AGG | + | chr2_2:51693500-51693519 | Msa0256710:intron | 15.0% |
| !! | TTCATTAATCAATTTGATAT+TGG | - | chr2_2:51693607-51693626 | None:intergenic | 15.0% |
| !! | TTTGTAAAGCAAAATATAAA+AGG | - | chr2_2:51693649-51693668 | None:intergenic | 15.0% |
| !!! | TGAGTTTATTTTAATACTCT+TGG | - | chr2_2:51693258-51693277 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTTTATAGGAGAT+TGG | + | chr2_2:51693507-51693526 | Msa0256710:intron | 20.0% |
| !!! | ATTAGCTTTTATTTTAACCA+AGG | + | chr2_2:51693671-51693690 | Msa0256710:intron | 20.0% |
| !! | GAAAGAAAAATTATTAACCT+TGG | - | chr2_2:51693691-51693710 | None:intergenic | 20.0% |
| !!! | TGAGTTTATTTTAATACTCT+TGG | - | chr2_2:51693258-51693277 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTTTATAGGAGAT+TGG | + | chr2_2:51693507-51693526 | Msa0256710:intron | 20.0% |
| !!! | ATTAGCTTTTATTTTAACCA+AGG | + | chr2_2:51693671-51693690 | Msa0256710:intron | 20.0% |
| !! | GAAAGAAAAATTATTAACCT+TGG | - | chr2_2:51693691-51693710 | None:intergenic | 20.0% |
| !!! | TATTTTAATACTCTTGGAAG+TGG | - | chr2_2:51693252-51693271 | None:intergenic | 25.0% |
| ! | TATGTTGATCCATAATGAAT+AGG | + | chr2_2:51693399-51693418 | Msa0256710:intron | 25.0% |
| ! | ATGTTGATCCATAATGAATA+GGG | + | chr2_2:51693400-51693419 | Msa0256710:intron | 25.0% |
| !! | GCAACTTTAAGAATAAAACT+GGG | + | chr2_2:51693546-51693565 | Msa0256710:intron | 25.0% |
| ! | CAATTTGATATTGGAAAACT+TGG | - | chr2_2:51693598-51693617 | None:intergenic | 25.0% |
| !!! | TATTTTAATACTCTTGGAAG+TGG | - | chr2_2:51693252-51693271 | None:intergenic | 25.0% |
| ! | TATGTTGATCCATAATGAAT+AGG | + | chr2_2:51693399-51693418 | Msa0256710:intron | 25.0% |
| ! | ATGTTGATCCATAATGAATA+GGG | + | chr2_2:51693400-51693419 | Msa0256710:intron | 25.0% |
| !! | GCAACTTTAAGAATAAAACT+GGG | + | chr2_2:51693546-51693565 | Msa0256710:intron | 25.0% |
| ! | CAATTTGATATTGGAAAACT+TGG | - | chr2_2:51693598-51693617 | None:intergenic | 25.0% |
| CTTCGAGACTAATCTTTAAT+CGG | + | chr2_2:51693474-51693493 | Msa0256710:intron | 30.0% | |
| ! | GGCAACTTTAAGAATAAAAC+TGG | + | chr2_2:51693545-51693564 | Msa0256710:intron | 30.0% |
| CTTCGAGACTAATCTTTAAT+CGG | + | chr2_2:51693474-51693493 | Msa0256710:intron | 30.0% | |
| ! | GGCAACTTTAAGAATAAAAC+TGG | + | chr2_2:51693545-51693564 | Msa0256710:intron | 30.0% |
| ! | CTTTGTTGCTTCAAATTCAG+AGG | + | chr2_2:51693061-51693080 | Msa0256710:CDS | 35.0% |
| TTCATGCAGTGATGTGATTA+AGG | + | chr2_2:51693091-51693110 | Msa0256710:intron | 35.0% | |
| ! | AATAAACTCACAATTGGCTC+AGG | + | chr2_2:51693268-51693287 | Msa0256710:CDS | 35.0% |
| AGATTGGACTGCTTATCTAT+TGG | + | chr2_2:51693523-51693542 | Msa0256710:intron | 35.0% | |
| GATTGGACTGCTTATCTATT+GGG | + | chr2_2:51693524-51693543 | Msa0256710:intron | 35.0% | |
| !! | ATTGCAGGATTGGTTAATTG+AGG | + | chr2_2:51693747-51693766 | Msa0256710:intron | 35.0% |
| ! | CTTTGTTGCTTCAAATTCAG+AGG | + | chr2_2:51693061-51693080 | Msa0256710:CDS | 35.0% |
| TTCATGCAGTGATGTGATTA+AGG | + | chr2_2:51693091-51693110 | Msa0256710:intron | 35.0% | |
| ! | AATAAACTCACAATTGGCTC+AGG | + | chr2_2:51693268-51693287 | Msa0256710:CDS | 35.0% |
| AGATTGGACTGCTTATCTAT+TGG | + | chr2_2:51693523-51693542 | Msa0256710:intron | 35.0% | |
| GATTGGACTGCTTATCTATT+GGG | + | chr2_2:51693524-51693543 | Msa0256710:intron | 35.0% | |
| !! | ATTGCAGGATTGGTTAATTG+AGG | + | chr2_2:51693747-51693766 | Msa0256710:intron | 35.0% |
| GAAACCTTGTGTGAGCTATT+TGG | + | chr2_2:51693118-51693137 | Msa0256710:CDS | 40.0% | |
| ATCAGCTGTATCAACATCTG+AGG | + | chr2_2:51693196-51693215 | Msa0256710:CDS | 40.0% | |
| ACTTGGAACAATCAGCATCT+GGG | - | chr2_2:51693337-51693356 | None:intergenic | 40.0% | |
| TACTTGGAACAATCAGCATC+TGG | - | chr2_2:51693338-51693357 | None:intergenic | 40.0% | |
| TGGCTACACCCTATTCATTA+TGG | - | chr2_2:51693411-51693430 | None:intergenic | 40.0% | |
| GTTAATTGAGGCTTCGAAGT+GGG | + | chr2_2:51693759-51693778 | Msa0256710:intron | 40.0% | |
| GAAACCTTGTGTGAGCTATT+TGG | + | chr2_2:51693118-51693137 | Msa0256710:CDS | 40.0% | |
| ATCAGCTGTATCAACATCTG+AGG | + | chr2_2:51693196-51693215 | Msa0256710:CDS | 40.0% | |
| ACTTGGAACAATCAGCATCT+GGG | - | chr2_2:51693337-51693356 | None:intergenic | 40.0% | |
| TACTTGGAACAATCAGCATC+TGG | - | chr2_2:51693338-51693357 | None:intergenic | 40.0% | |
| TGGCTACACCCTATTCATTA+TGG | - | chr2_2:51693411-51693430 | None:intergenic | 40.0% | |
| GTTAATTGAGGCTTCGAAGT+GGG | + | chr2_2:51693759-51693778 | Msa0256710:intron | 40.0% | |
| CTGACCAAATAGCTCACACA+AGG | - | chr2_2:51693125-51693144 | None:intergenic | 45.0% | |
| TGTGTGAGCTATTTGGTCAG+TGG | + | chr2_2:51693125-51693144 | Msa0256710:CDS | 45.0% | |
| AGCTATTTGGTCAGTGGAAG+TGG | + | chr2_2:51693131-51693150 | Msa0256710:CDS | 45.0% | |
| CTTGGAACAATCAGCATCTG+GGG | - | chr2_2:51693336-51693355 | None:intergenic | 45.0% | |
| !! | TGTAGCGATTTTGATACCCG+AGG | - | chr2_2:51693434-51693453 | None:intergenic | 45.0% |
| TTTGTTGCTGCGTCTATTGC+AGG | + | chr2_2:51693732-51693751 | Msa0256710:intron | 45.0% | |
| GGTTAATTGAGGCTTCGAAG+TGG | + | chr2_2:51693758-51693777 | Msa0256710:intron | 45.0% | |
| CTGACCAAATAGCTCACACA+AGG | - | chr2_2:51693125-51693144 | None:intergenic | 45.0% | |
| TGTGTGAGCTATTTGGTCAG+TGG | + | chr2_2:51693125-51693144 | Msa0256710:CDS | 45.0% | |
| AGCTATTTGGTCAGTGGAAG+TGG | + | chr2_2:51693131-51693150 | Msa0256710:CDS | 45.0% | |
| CTTGGAACAATCAGCATCTG+GGG | - | chr2_2:51693336-51693355 | None:intergenic | 45.0% | |
| !! | TGTAGCGATTTTGATACCCG+AGG | - | chr2_2:51693434-51693453 | None:intergenic | 45.0% |
| TTTGTTGCTGCGTCTATTGC+AGG | + | chr2_2:51693732-51693751 | Msa0256710:intron | 45.0% | |
| GGTTAATTGAGGCTTCGAAG+TGG | + | chr2_2:51693758-51693777 | Msa0256710:intron | 45.0% | |
| ! | AATTGGCTCAGGCTCTTGCA+GGG | + | chr2_2:51693279-51693298 | Msa0256710:CDS | 50.0% |
| ATCTGGGGAGATACTGATGG+GGG | - | chr2_2:51693321-51693340 | None:intergenic | 50.0% | |
| CATCTGGGGAGATACTGATG+GGG | - | chr2_2:51693322-51693341 | None:intergenic | 50.0% | |
| GCATCTGGGGAGATACTGAT+GGG | - | chr2_2:51693323-51693342 | None:intergenic | 50.0% | |
| AGCATCTGGGGAGATACTGA+TGG | - | chr2_2:51693324-51693343 | None:intergenic | 50.0% | |
| TGAATAGGGTGTAGCCACCT+CGG | + | chr2_2:51693414-51693433 | Msa0256710:intron | 50.0% | |
| !! | AGCGATTTTGATACCCGAGG+TGG | - | chr2_2:51693431-51693450 | None:intergenic | 50.0% |
| TGCTGCGTCTATTGCAGGAT+TGG | + | chr2_2:51693737-51693756 | Msa0256710:intron | 50.0% | |
| TGAGGCTTCGAAGTGGGAAT+TGG | + | chr2_2:51693765-51693784 | Msa0256710:intron | 50.0% | |
| GCTTCGAAGTGGGAATTGGA+GGG | + | chr2_2:51693769-51693788 | Msa0256710:intron | 50.0% | |
| ! | AATTGGCTCAGGCTCTTGCA+GGG | + | chr2_2:51693279-51693298 | Msa0256710:CDS | 50.0% |
| ATCTGGGGAGATACTGATGG+GGG | - | chr2_2:51693321-51693340 | None:intergenic | 50.0% | |
| CATCTGGGGAGATACTGATG+GGG | - | chr2_2:51693322-51693341 | None:intergenic | 50.0% | |
| GCATCTGGGGAGATACTGAT+GGG | - | chr2_2:51693323-51693342 | None:intergenic | 50.0% | |
| AGCATCTGGGGAGATACTGA+TGG | - | chr2_2:51693324-51693343 | None:intergenic | 50.0% | |
| TGAATAGGGTGTAGCCACCT+CGG | + | chr2_2:51693414-51693433 | Msa0256710:intron | 50.0% | |
| !! | AGCGATTTTGATACCCGAGG+TGG | - | chr2_2:51693431-51693450 | None:intergenic | 50.0% |
| TGCTGCGTCTATTGCAGGAT+TGG | + | chr2_2:51693737-51693756 | Msa0256710:intron | 50.0% | |
| TGAGGCTTCGAAGTGGGAAT+TGG | + | chr2_2:51693765-51693784 | Msa0256710:intron | 50.0% | |
| GCTTCGAAGTGGGAATTGGA+GGG | + | chr2_2:51693769-51693788 | Msa0256710:intron | 50.0% | |
| ! | CAATTGGCTCAGGCTCTTGC+AGG | + | chr2_2:51693278-51693297 | Msa0256710:CDS | 55.0% |
| GAATAGGGTGTAGCCACCTC+GGG | + | chr2_2:51693415-51693434 | Msa0256710:intron | 55.0% | |
| GGCTTCGAAGTGGGAATTGG+AGG | + | chr2_2:51693768-51693787 | Msa0256710:intron | 55.0% | |
| ! | CAATTGGCTCAGGCTCTTGC+AGG | + | chr2_2:51693278-51693297 | Msa0256710:CDS | 55.0% |
| GAATAGGGTGTAGCCACCTC+GGG | + | chr2_2:51693415-51693434 | Msa0256710:intron | 55.0% | |
| GGCTTCGAAGTGGGAATTGG+AGG | + | chr2_2:51693768-51693787 | Msa0256710:intron | 55.0% | |
| CCAGAGCAACATGCAGCTGG+TGG | - | chr2_2:51693161-51693180 | None:intergenic | 60.0% | |
| CCACCAGCTGCATGTTGCTC+TGG | + | chr2_2:51693158-51693177 | Msa0256710:CDS | 60.0% | |
| GCTCCAGAGCAACATGCAGC+TGG | - | chr2_2:51693164-51693183 | None:intergenic | 60.0% | |
| CAGGCTCTTGCAGGGAACTG+TGG | + | chr2_2:51693287-51693306 | Msa0256710:CDS | 60.0% | |
| CCAGAGCAACATGCAGCTGG+TGG | - | chr2_2:51693161-51693180 | None:intergenic | 60.0% | |
| CCACCAGCTGCATGTTGCTC+TGG | + | chr2_2:51693158-51693177 | Msa0256710:CDS | 60.0% | |
| GCTCCAGAGCAACATGCAGC+TGG | - | chr2_2:51693164-51693183 | None:intergenic | 60.0% | |
| CAGGCTCTTGCAGGGAACTG+TGG | + | chr2_2:51693287-51693306 | Msa0256710:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 51693017 | 51693898 | 51693017 | ID=Msa0256710;Name=Msa0256710 |
| chr2_2 | mRNA | 51693017 | 51693898 | 51693017 | ID=Msa0256710-mRNA-1;Parent=Msa0256710;Name=Msa0256710-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.66|0|0|3|0|112 |
| chr2_2 | exon | 51693017 | 51693103 | 51693017 | ID=Msa0256710-mRNA-1:exon:15597;Parent=Msa0256710-mRNA-1 |
| chr2_2 | exon | 51693113 | 51693354 | 51693113 | ID=Msa0256710-mRNA-1:exon:15598;Parent=Msa0256710-mRNA-1 |
| chr2_2 | exon | 51693892 | 51693898 | 51693892 | ID=Msa0256710-mRNA-1:exon:15599;Parent=Msa0256710-mRNA-1 |
| chr2_2 | CDS | 51693017 | 51693103 | 51693017 | ID=Msa0256710-mRNA-1:cds;Parent=Msa0256710-mRNA-1 |
| chr2_2 | CDS | 51693113 | 51693354 | 51693113 | ID=Msa0256710-mRNA-1:cds;Parent=Msa0256710-mRNA-1 |
| chr2_2 | CDS | 51693892 | 51693898 | 51693892 | ID=Msa0256710-mRNA-1:cds;Parent=Msa0256710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
