Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289960 | XP_039686545.1 | 93.860 | 114 | 4 | 1 | 1 | 111 | 1 | 114 | 7.10e-65 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289960 | sp|Q9ZPW9|NLTP8_ARATH | 53.211 | 109 | 48 | 1 | 6 | 111 | 7 | 115 | 6.32e-34 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289960 | G7IQQ8 | 93.860 | 114 | 4 | 1 | 1 | 111 | 1 | 114 | 3.39e-65 | 202 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008440 | Msa0289960 | 0.813011 | 3.175395e-51 | -8.615850e-47 |
| Msa0015950 | Msa0289960 | 0.814102 | 1.827343e-51 | -8.615850e-47 |
| Msa0015960 | Msa0289960 | 0.810975 | 8.823836e-51 | -8.615850e-47 |
| Msa0016070 | Msa0289960 | 0.806694 | 7.263635e-50 | -8.615850e-47 |
| Msa0016080 | Msa0289960 | 0.821821 | 3.293482e-53 | -8.615850e-47 |
| Msa0057110 | Msa0289960 | 0.835127 | 2.010217e-56 | -8.615850e-47 |
| Msa0057170 | Msa0289960 | 0.840088 | 1.073179e-57 | -8.615850e-47 |
| Msa0060670 | Msa0289960 | 0.842946 | 1.895136e-58 | -8.615850e-47 |
| Msa0168750 | Msa0289960 | 0.806321 | 8.707395e-50 | -8.615850e-47 |
| Msa0189680 | Msa0289960 | 0.819912 | 9.050478e-53 | -8.615850e-47 |
| Msa0210610 | Msa0289960 | 0.952309 | 3.198023e-110 | -8.615850e-47 |
| Msa0218500 | Msa0289960 | 0.813723 | 2.215407e-51 | -8.615850e-47 |
| Msa0218610 | Msa0289960 | 0.833082 | 6.540255e-56 | -8.615850e-47 |
| Msa0219340 | Msa0289960 | 0.834721 | 2.544468e-56 | -8.615850e-47 |
| Msa0231990 | Msa0289960 | 0.818455 | 1.942953e-52 | -8.615850e-47 |
| Msa0232060 | Msa0289960 | 0.822098 | 2.841138e-53 | -8.615850e-47 |
| Msa0256710 | Msa0289960 | 0.875908 | 2.125733e-68 | -8.615850e-47 |
| Msa0256920 | Msa0289960 | 0.811500 | 6.788166e-51 | -8.615850e-47 |
| Msa0258260 | Msa0289960 | 0.810698 | 1.012599e-50 | -8.615850e-47 |
| Msa0263880 | Msa0289960 | 0.809099 | 2.237410e-50 | -8.615850e-47 |
| Msa0289960 | Msa0297340 | 0.815211 | 1.038630e-51 | -8.615850e-47 |
| Msa0289960 | Msa0297900 | 0.812041 | 5.175085e-51 | -8.615850e-47 |
| Msa0289960 | Msa0297910 | 0.874235 | 7.913390e-68 | -8.615850e-47 |
| Msa0289960 | Msa0307740 | 0.813725 | 2.213755e-51 | -8.615850e-47 |
| Msa0289960 | Msa0327760 | 0.857485 | 1.580958e-62 | -8.615850e-47 |
| Msa0289960 | Msa0343210 | 0.859349 | 4.399439e-63 | -8.615850e-47 |
| Msa0289960 | Msa0383480 | 0.813334 | 2.698137e-51 | -8.615850e-47 |
| Msa0289960 | Msa0477420 | 0.805166 | 1.521898e-49 | -8.615850e-47 |
| Msa0289960 | Msa0661410 | 0.812207 | 4.760881e-51 | -8.615850e-47 |
| Msa0289960 | Msa0661420 | 0.813166 | 2.936424e-51 | -8.615850e-47 |
| Msa0289960 | Msa0682110 | 0.828384 | 9.266282e-55 | -8.615850e-47 |
| Msa0289960 | Msa0682160 | 0.828790 | 7.390673e-55 | -8.615850e-47 |
| Msa0289960 | Msa0810330 | 0.836781 | 7.651342e-57 | -8.615850e-47 |
| Msa0289960 | Msa0812720 | 0.813483 | 2.502123e-51 | -8.615850e-47 |
| Msa0289960 | Msa0907880 | 0.820861 | 5.484650e-53 | -8.615850e-47 |
| Msa0289960 | Msa0931620 | 0.846214 | 2.499977e-59 | -8.615850e-47 |
| Msa0289960 | Msa0975960 | 0.801143 | 1.034928e-48 | -8.615850e-47 |
| Msa0289960 | Msa1012800 | 0.807945 | 3.945030e-50 | -8.615850e-47 |
| Msa0289960 | Msa1131270 | 0.822860 | 1.889734e-53 | -8.615850e-47 |
| Msa0289960 | Msa1167310 | 0.800883 | 1.169521e-48 | -8.615850e-47 |
| Msa0289960 | Msa1202800 | 0.826656 | 2.407269e-54 | -8.615850e-47 |
| Msa0289960 | Msa1203440 | 0.828568 | 8.361598e-55 | -8.615850e-47 |
| Msa0289960 | Msa1238600 | 0.803328 | 3.673141e-49 | -8.615850e-47 |
| Msa0289960 | Msa1255210 | 0.827920 | 1.198065e-54 | -8.615850e-47 |
| Msa0289960 | Msa1255690 | 0.809573 | 1.770120e-50 | -8.615850e-47 |
| Msa0289960 | Msa1284000 | 0.803944 | 2.737467e-49 | -8.615850e-47 |
| Msa0289960 | Msa1284020 | 0.800186 | 1.622039e-48 | -8.615850e-47 |
| Msa0289960 | Msa1295650 | 0.831002 | 2.135995e-55 | -8.615850e-47 |
| Msa0289960 | Msa1323070 | 0.806289 | 8.843465e-50 | -8.615850e-47 |
| Msa0289960 | Msa1343280 | 0.808222 | 3.442919e-50 | -8.615850e-47 |
| Msa0289960 | Msa1348540 | 0.835580 | 1.545187e-56 | -8.615850e-47 |
| Msa0289960 | Msa1386830 | 0.802279 | 6.049169e-49 | -8.615850e-47 |
| Msa0289960 | Msa1416130 | 0.836741 | 7.831849e-57 | -8.615850e-47 |
| Msa0289960 | Msa1430950 | 0.809389 | 1.938320e-50 | -8.615850e-47 |
| Msa0289960 | Msa1433040 | 0.811268 | 7.623067e-51 | -8.615850e-47 |
| Msa0289960 | Msa1439250 | 0.821528 | 3.848285e-53 | -8.615850e-47 |
| Msa0289960 | Msa1439270 | 0.833611 | 4.826941e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289960 | MtrunA17_Chr2g0309241 | 93.860 | 114 | 4 | 1 | 1 | 111 | 1 | 114 | 6.53e-69 | 202 |
| Msa0289960 | MtrunA17_Chr4g0012951 | 43.478 | 115 | 60 | 3 | 1 | 111 | 1 | 114 | 7.10e-24 | 88.2 |
| Msa0289960 | MtrunA17_Chr4g0013001 | 40.000 | 115 | 64 | 3 | 1 | 111 | 1 | 114 | 9.85e-21 | 80.1 |
| Msa0289960 | MtrunA17_Chr4g0012961 | 40.000 | 115 | 64 | 3 | 1 | 111 | 1 | 114 | 1.13e-20 | 80.1 |
| Msa0289960 | MtrunA17_Chr4g0012991 | 40.000 | 115 | 64 | 3 | 1 | 111 | 56 | 169 | 4.86e-20 | 80.1 |
| Msa0289960 | MtrunA17_Chr4g0012891 | 35.537 | 121 | 69 | 3 | 1 | 112 | 6 | 126 | 9.33e-19 | 75.5 |
| Msa0289960 | MtrunA17_Chr4g0013261 | 37.931 | 116 | 66 | 4 | 1 | 111 | 1 | 115 | 5.53e-18 | 73.2 |
| Msa0289960 | MtrunA17_Chr4g0013251 | 38.793 | 116 | 65 | 4 | 1 | 111 | 1 | 115 | 1.76e-17 | 72.0 |
| Msa0289960 | MtrunA17_Chr4g0013211 | 36.283 | 113 | 63 | 5 | 6 | 111 | 4 | 114 | 4.76e-16 | 68.2 |
| Msa0289960 | MtrunA17_Chr7g0244841 | 33.333 | 105 | 67 | 1 | 10 | 111 | 13 | 117 | 1.29e-15 | 67.4 |
| Msa0289960 | MtrunA17_Chr7g0244821 | 32.727 | 110 | 74 | 0 | 1 | 110 | 7 | 116 | 2.87e-15 | 66.6 |
| Msa0289960 | MtrunA17_Chr7g0244831 | 30.000 | 110 | 73 | 2 | 6 | 111 | 9 | 118 | 9.48e-15 | 65.1 |
| Msa0289960 | MtrunA17_Chr4g0012901 | 28.704 | 108 | 73 | 2 | 8 | 111 | 13 | 120 | 2.79e-14 | 63.9 |
| Msa0289960 | MtrunA17_Chr7g0233431 | 32.456 | 114 | 70 | 3 | 1 | 111 | 21 | 130 | 6.80e-14 | 63.2 |
| Msa0289960 | MtrunA17_Chr7g0244691 | 31.429 | 105 | 68 | 2 | 11 | 111 | 14 | 118 | 2.88e-13 | 61.2 |
| Msa0289960 | MtrunA17_Chr7g0244641 | 30.631 | 111 | 72 | 3 | 6 | 111 | 9 | 119 | 1.07e-12 | 59.7 |
| Msa0289960 | MtrunA17_Chr7g0244811 | 30.631 | 111 | 75 | 2 | 1 | 109 | 8 | 118 | 3.16e-12 | 58.5 |
| Msa0289960 | MtrunA17_Chr7g0244681 | 30.000 | 110 | 76 | 1 | 1 | 109 | 7 | 116 | 6.55e-12 | 57.8 |
| Msa0289960 | MtrunA17_Chr1g0165761 | 32.432 | 111 | 74 | 1 | 2 | 111 | 8 | 118 | 7.62e-12 | 57.4 |
| Msa0289960 | MtrunA17_Chr7g0244671 | 31.429 | 105 | 67 | 3 | 10 | 109 | 13 | 117 | 6.26e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289960 | AT2G18370.1 | 53.211 | 109 | 48 | 1 | 6 | 111 | 7 | 115 | 6.43e-35 | 116 |
| Msa0289960 | AT5G59320.1 | 40.870 | 115 | 63 | 3 | 1 | 111 | 1 | 114 | 2.30e-21 | 82.0 |
| Msa0289960 | AT5G59310.1 | 35.965 | 114 | 67 | 3 | 1 | 111 | 1 | 111 | 2.59e-19 | 77.0 |
| Msa0289960 | AT3G51590.1 | 37.143 | 105 | 61 | 3 | 11 | 111 | 12 | 115 | 9.58e-17 | 70.5 |
| Msa0289960 | AT5G01870.1 | 39.806 | 103 | 54 | 4 | 15 | 111 | 15 | 115 | 3.09e-16 | 68.9 |
| Msa0289960 | AT3G08770.1 | 37.500 | 96 | 53 | 3 | 22 | 111 | 18 | 112 | 1.18e-14 | 65.1 |
| Msa0289960 | AT3G08770.2 | 38.710 | 93 | 50 | 3 | 22 | 108 | 18 | 109 | 2.09e-14 | 64.3 |
| Msa0289960 | AT2G38540.1 | 36.458 | 96 | 55 | 3 | 21 | 111 | 23 | 117 | 2.08e-13 | 62.0 |
| Msa0289960 | AT2G15050.3 | 31.481 | 108 | 65 | 4 | 3 | 101 | 2 | 109 | 3.58e-13 | 61.2 |
| Msa0289960 | AT2G15050.2 | 31.481 | 108 | 65 | 4 | 3 | 101 | 2 | 109 | 3.96e-13 | 61.2 |
| Msa0289960 | AT2G15050.1 | 31.481 | 108 | 65 | 4 | 3 | 101 | 2 | 109 | 4.39e-13 | 61.2 |
| Msa0289960 | AT3G51600.1 | 33.962 | 106 | 64 | 3 | 11 | 111 | 13 | 117 | 5.25e-13 | 60.8 |
| Msa0289960 | AT4G33355.2 | 34.951 | 103 | 61 | 4 | 11 | 109 | 16 | 116 | 5.42e-13 | 60.8 |
| Msa0289960 | AT4G33355.1 | 34.286 | 105 | 63 | 4 | 11 | 111 | 16 | 118 | 5.85e-13 | 60.8 |
Find 22 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTAAAGAAGATTTCA+TGG | 0.285915 | 2_3:+36550794 | None:intergenic |
| CAATTGGCTCAGGCTCTTGC+AGG | 0.325545 | 2_3:-36550531 | Msa0289960:CDS |
| GAAACCTTGTGTGAGCTATT+TGG | 0.326436 | 2_3:-36550691 | Msa0289960:CDS |
| TACTTGGAACAATCAGCATC+TGG | 0.351088 | 2_3:+36550474 | None:intergenic |
| CCACCAGCTGCATGTTGCTC+TGG | 0.412892 | 2_3:-36550651 | Msa0289960:CDS |
| AGCTATTTGGTCAGTGGAAG+TGG | 0.469665 | 2_3:-36550678 | Msa0289960:CDS |
| TATTAAAATCAACTCACAAT+TGG | 0.472842 | 2_3:-36550547 | Msa0289960:CDS |
| CTTTGTTGCTTCAAATTCAG+AGG | 0.497380 | 2_3:-36550748 | Msa0289960:CDS |
| AATCAACTCACAATTGGCTC+AGG | 0.514463 | 2_3:-36550541 | Msa0289960:CDS |
| ACTTGGAACAATCAGCATCT+GGG | 0.519962 | 2_3:+36550475 | None:intergenic |
| GCTCCAGAGCAACATGCAGC+TGG | 0.542595 | 2_3:+36550648 | None:intergenic |
| CAGGCTCTTGCAGGGAACTG+TGG | 0.566184 | 2_3:-36550522 | Msa0289960:CDS |
| AGCATCTGGGGAGATACTGA+TGG | 0.572323 | 2_3:+36550488 | None:intergenic |
| GCATCTGGGGAGATACTGAT+GGG | 0.583176 | 2_3:+36550489 | None:intergenic |
| AATTGGCTCAGGCTCTTGCA+GGG | 0.601314 | 2_3:-36550530 | Msa0289960:CDS |
| CTTGGAACAATCAGCATCTG+GGG | 0.606095 | 2_3:+36550476 | None:intergenic |
| CCAGAGCAACATGCAGCTGG+TGG | 0.627457 | 2_3:+36550651 | None:intergenic |
| ATCAGCTGTATCAACATCTG+AGG | 0.627591 | 2_3:-36550613 | Msa0289960:CDS |
| TGTGTGAGCTATTTGGTCAG+TGG | 0.644010 | 2_3:-36550684 | Msa0289960:CDS |
| CTGACCAAATAGCTCACACA+AGG | 0.667347 | 2_3:+36550687 | None:intergenic |
| ATCTGGGGAGATACTGATGG+GGG | 0.675132 | 2_3:+36550491 | None:intergenic |
| CATCTGGGGAGATACTGATG+GGG | 0.712150 | 2_3:+36550490 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAATAAGTAAATAA+AGG | + | chr2_3:36550667-36550686 | None:intergenic | 10.0% |
| !! | AAAGATAAATAAGTAAATAA+AGG | + | chr2_3:36550667-36550686 | None:intergenic | 10.0% |
| !!! | TTTAATGTATGATTTTTACT+TGG | + | chr2_3:36550309-36550328 | None:intergenic | 15.0% |
| !!! | ATGAAACAACTTTTTTTTAT+AGG | - | chr2_3:36550454-36550473 | Msa0289960:intron | 15.0% |
| !! | TTCATTAATCAATTTGATAT+TGG | + | chr2_3:36550561-36550580 | None:intergenic | 15.0% |
| !! | TTTGTAAAGCAAAATATAAA+AGG | + | chr2_3:36550603-36550622 | None:intergenic | 15.0% |
| !!! | TTTAATGTATGATTTTTACT+TGG | + | chr2_3:36550309-36550328 | None:intergenic | 15.0% |
| !!! | ATGAAACAACTTTTTTTTAT+AGG | - | chr2_3:36550454-36550473 | Msa0289960:intron | 15.0% |
| !! | TTCATTAATCAATTTGATAT+TGG | + | chr2_3:36550561-36550580 | None:intergenic | 15.0% |
| !! | TTTGTAAAGCAAAATATAAA+AGG | + | chr2_3:36550603-36550622 | None:intergenic | 15.0% |
| !! | TATTAAAATCAACTCACAAT+TGG | - | chr2_3:36550217-36550236 | Msa0289960:intron | 20.0% |
| !!! | AACTTTTTTTTATAGGAGAT+TGG | - | chr2_3:36550461-36550480 | Msa0289960:intron | 20.0% |
| !!! | ATTAGCTTTTATTTTAACCA+AGG | - | chr2_3:36550625-36550644 | Msa0289960:CDS | 20.0% |
| !! | GAAAGAAAAATTATTAACCT+TGG | + | chr2_3:36550645-36550664 | None:intergenic | 20.0% |
| !! | TATTAAAATCAACTCACAAT+TGG | - | chr2_3:36550217-36550236 | Msa0289960:intron | 20.0% |
| !!! | AACTTTTTTTTATAGGAGAT+TGG | - | chr2_3:36550461-36550480 | Msa0289960:intron | 20.0% |
| !!! | ATTAGCTTTTATTTTAACCA+AGG | - | chr2_3:36550625-36550644 | Msa0289960:CDS | 20.0% |
| !! | GAAAGAAAAATTATTAACCT+TGG | + | chr2_3:36550645-36550664 | None:intergenic | 20.0% |
| !!! | TGAGTTGATTTTAATACTCT+TGG | + | chr2_3:36550213-36550232 | None:intergenic | 25.0% |
| ! | TATGTTGATCCATAATGAAT+AGG | - | chr2_3:36550354-36550373 | Msa0289960:intron | 25.0% |
| ! | ATGTTGATCCATAATGAATA+GGG | - | chr2_3:36550355-36550374 | Msa0289960:intron | 25.0% |
| !! | GCAACTTTAAGAATAAAACT+GGG | - | chr2_3:36550500-36550519 | Msa0289960:CDS | 25.0% |
| ! | CAATTTGATATTGGAAAACT+TGG | + | chr2_3:36550552-36550571 | None:intergenic | 25.0% |
| !!! | TGAGTTGATTTTAATACTCT+TGG | + | chr2_3:36550213-36550232 | None:intergenic | 25.0% |
| ! | TATGTTGATCCATAATGAAT+AGG | - | chr2_3:36550354-36550373 | Msa0289960:intron | 25.0% |
| ! | ATGTTGATCCATAATGAATA+GGG | - | chr2_3:36550355-36550374 | Msa0289960:intron | 25.0% |
| !! | GCAACTTTAAGAATAAAACT+GGG | - | chr2_3:36550500-36550519 | Msa0289960:CDS | 25.0% |
| ! | CAATTTGATATTGGAAAACT+TGG | + | chr2_3:36550552-36550571 | None:intergenic | 25.0% |
| !! | GATTTTAATACTCTTGGAAG+TGG | + | chr2_3:36550207-36550226 | None:intergenic | 30.0% |
| CTTCGAGACTAATCTTTAAT+CGG | - | chr2_3:36550429-36550448 | Msa0289960:intron | 30.0% | |
| ! | GGCAACTTTAAGAATAAAAC+TGG | - | chr2_3:36550499-36550518 | Msa0289960:CDS | 30.0% |
| !! | GATTTTAATACTCTTGGAAG+TGG | + | chr2_3:36550207-36550226 | None:intergenic | 30.0% |
| CTTCGAGACTAATCTTTAAT+CGG | - | chr2_3:36550429-36550448 | Msa0289960:intron | 30.0% | |
| ! | GGCAACTTTAAGAATAAAAC+TGG | - | chr2_3:36550499-36550518 | Msa0289960:CDS | 30.0% |
| ! | CTTTGTTGCTTCAAATTCAG+AGG | - | chr2_3:36550016-36550035 | Msa0289960:intron | 35.0% |
| TTCATGCAGTGATGTGATTA+AGG | - | chr2_3:36550046-36550065 | Msa0289960:intron | 35.0% | |
| AGATTGGACTGCTTATCTAT+TGG | - | chr2_3:36550477-36550496 | Msa0289960:CDS | 35.0% | |
| GATTGGACTGCTTATCTATT+GGG | - | chr2_3:36550478-36550497 | Msa0289960:CDS | 35.0% | |
| GTTAATTGAGACTTCGAAGT+GGG | - | chr2_3:36550713-36550732 | Msa0289960:intron | 35.0% | |
| ! | CTTTGTTGCTTCAAATTCAG+AGG | - | chr2_3:36550016-36550035 | Msa0289960:intron | 35.0% |
| TTCATGCAGTGATGTGATTA+AGG | - | chr2_3:36550046-36550065 | Msa0289960:intron | 35.0% | |
| AGATTGGACTGCTTATCTAT+TGG | - | chr2_3:36550477-36550496 | Msa0289960:CDS | 35.0% | |
| GATTGGACTGCTTATCTATT+GGG | - | chr2_3:36550478-36550497 | Msa0289960:CDS | 35.0% | |
| GTTAATTGAGACTTCGAAGT+GGG | - | chr2_3:36550713-36550732 | Msa0289960:intron | 35.0% | |
| GAAACCTTGTGTGAGCTATT+TGG | - | chr2_3:36550073-36550092 | Msa0289960:intron | 40.0% | |
| ATCAGCTGTATCAACATCTG+AGG | - | chr2_3:36550151-36550170 | Msa0289960:intron | 40.0% | |
| ! | AATCAACTCACAATTGGCTC+AGG | - | chr2_3:36550223-36550242 | Msa0289960:intron | 40.0% |
| ACTTGGAACAATCAGCATCT+GGG | + | chr2_3:36550292-36550311 | None:intergenic | 40.0% | |
| TACTTGGAACAATCAGCATC+TGG | + | chr2_3:36550293-36550312 | None:intergenic | 40.0% | |
| TGGCTACACCCTATTCATTA+TGG | + | chr2_3:36550366-36550385 | None:intergenic | 40.0% | |
| GGTTAATTGAGACTTCGAAG+TGG | - | chr2_3:36550712-36550731 | Msa0289960:intron | 40.0% | |
| GAAACCTTGTGTGAGCTATT+TGG | - | chr2_3:36550073-36550092 | Msa0289960:intron | 40.0% | |
| ATCAGCTGTATCAACATCTG+AGG | - | chr2_3:36550151-36550170 | Msa0289960:intron | 40.0% | |
| ! | AATCAACTCACAATTGGCTC+AGG | - | chr2_3:36550223-36550242 | Msa0289960:intron | 40.0% |
| ACTTGGAACAATCAGCATCT+GGG | + | chr2_3:36550292-36550311 | None:intergenic | 40.0% | |
| TACTTGGAACAATCAGCATC+TGG | + | chr2_3:36550293-36550312 | None:intergenic | 40.0% | |
| TGGCTACACCCTATTCATTA+TGG | + | chr2_3:36550366-36550385 | None:intergenic | 40.0% | |
| GGTTAATTGAGACTTCGAAG+TGG | - | chr2_3:36550712-36550731 | Msa0289960:intron | 40.0% | |
| CTGACCAAATAGCTCACACA+AGG | + | chr2_3:36550080-36550099 | None:intergenic | 45.0% | |
| TGTGTGAGCTATTTGGTCAG+TGG | - | chr2_3:36550080-36550099 | Msa0289960:intron | 45.0% | |
| AGCTATTTGGTCAGTGGAAG+TGG | - | chr2_3:36550086-36550105 | Msa0289960:intron | 45.0% | |
| CTTGGAACAATCAGCATCTG+GGG | + | chr2_3:36550291-36550310 | None:intergenic | 45.0% | |
| !! | TGTAGCGATTTTGATACCCG+AGG | + | chr2_3:36550389-36550408 | None:intergenic | 45.0% |
| TTTGTTGCTGCGTCTATTGC+AGG | - | chr2_3:36550686-36550705 | Msa0289960:CDS | 45.0% | |
| TGAGACTTCGAAGTGGGAAT+TGG | - | chr2_3:36550719-36550738 | Msa0289960:intron | 45.0% | |
| ACTTCGAAGTGGGAATTGGA+GGG | - | chr2_3:36550723-36550742 | Msa0289960:intron | 45.0% | |
| CTGACCAAATAGCTCACACA+AGG | + | chr2_3:36550080-36550099 | None:intergenic | 45.0% | |
| TGTGTGAGCTATTTGGTCAG+TGG | - | chr2_3:36550080-36550099 | Msa0289960:intron | 45.0% | |
| AGCTATTTGGTCAGTGGAAG+TGG | - | chr2_3:36550086-36550105 | Msa0289960:intron | 45.0% | |
| CTTGGAACAATCAGCATCTG+GGG | + | chr2_3:36550291-36550310 | None:intergenic | 45.0% | |
| !! | TGTAGCGATTTTGATACCCG+AGG | + | chr2_3:36550389-36550408 | None:intergenic | 45.0% |
| TTTGTTGCTGCGTCTATTGC+AGG | - | chr2_3:36550686-36550705 | Msa0289960:CDS | 45.0% | |
| TGAGACTTCGAAGTGGGAAT+TGG | - | chr2_3:36550719-36550738 | Msa0289960:intron | 45.0% | |
| ACTTCGAAGTGGGAATTGGA+GGG | - | chr2_3:36550723-36550742 | Msa0289960:intron | 45.0% | |
| ! | AATTGGCTCAGGCTCTTGCA+GGG | - | chr2_3:36550234-36550253 | Msa0289960:intron | 50.0% |
| ATCTGGGGAGATACTGATGG+GGG | + | chr2_3:36550276-36550295 | None:intergenic | 50.0% | |
| CATCTGGGGAGATACTGATG+GGG | + | chr2_3:36550277-36550296 | None:intergenic | 50.0% | |
| GCATCTGGGGAGATACTGAT+GGG | + | chr2_3:36550278-36550297 | None:intergenic | 50.0% | |
| AGCATCTGGGGAGATACTGA+TGG | + | chr2_3:36550279-36550298 | None:intergenic | 50.0% | |
| TGAATAGGGTGTAGCCACCT+CGG | - | chr2_3:36550369-36550388 | Msa0289960:intron | 50.0% | |
| !! | AGCGATTTTGATACCCGAGG+TGG | + | chr2_3:36550386-36550405 | None:intergenic | 50.0% |
| TGCTGCGTCTATTGCAGGAT+TGG | - | chr2_3:36550691-36550710 | Msa0289960:CDS | 50.0% | |
| GACTTCGAAGTGGGAATTGG+AGG | - | chr2_3:36550722-36550741 | Msa0289960:intron | 50.0% | |
| ! | AATTGGCTCAGGCTCTTGCA+GGG | - | chr2_3:36550234-36550253 | Msa0289960:intron | 50.0% |
| ATCTGGGGAGATACTGATGG+GGG | + | chr2_3:36550276-36550295 | None:intergenic | 50.0% | |
| CATCTGGGGAGATACTGATG+GGG | + | chr2_3:36550277-36550296 | None:intergenic | 50.0% | |
| GCATCTGGGGAGATACTGAT+GGG | + | chr2_3:36550278-36550297 | None:intergenic | 50.0% | |
| AGCATCTGGGGAGATACTGA+TGG | + | chr2_3:36550279-36550298 | None:intergenic | 50.0% | |
| TGAATAGGGTGTAGCCACCT+CGG | - | chr2_3:36550369-36550388 | Msa0289960:intron | 50.0% | |
| !! | AGCGATTTTGATACCCGAGG+TGG | + | chr2_3:36550386-36550405 | None:intergenic | 50.0% |
| TGCTGCGTCTATTGCAGGAT+TGG | - | chr2_3:36550691-36550710 | Msa0289960:CDS | 50.0% | |
| GACTTCGAAGTGGGAATTGG+AGG | - | chr2_3:36550722-36550741 | Msa0289960:intron | 50.0% | |
| ! | CAATTGGCTCAGGCTCTTGC+AGG | - | chr2_3:36550233-36550252 | Msa0289960:intron | 55.0% |
| GAATAGGGTGTAGCCACCTC+GGG | - | chr2_3:36550370-36550389 | Msa0289960:intron | 55.0% | |
| ! | CAATTGGCTCAGGCTCTTGC+AGG | - | chr2_3:36550233-36550252 | Msa0289960:intron | 55.0% |
| GAATAGGGTGTAGCCACCTC+GGG | - | chr2_3:36550370-36550389 | Msa0289960:intron | 55.0% | |
| CCAGAGCAACATGCAGCTGG+TGG | + | chr2_3:36550116-36550135 | None:intergenic | 60.0% | |
| CCACCAGCTGCATGTTGCTC+TGG | - | chr2_3:36550113-36550132 | Msa0289960:intron | 60.0% | |
| GCTCCAGAGCAACATGCAGC+TGG | + | chr2_3:36550119-36550138 | None:intergenic | 60.0% | |
| CAGGCTCTTGCAGGGAACTG+TGG | - | chr2_3:36550242-36550261 | Msa0289960:intron | 60.0% | |
| CCAGAGCAACATGCAGCTGG+TGG | + | chr2_3:36550116-36550135 | None:intergenic | 60.0% | |
| CCACCAGCTGCATGTTGCTC+TGG | - | chr2_3:36550113-36550132 | Msa0289960:intron | 60.0% | |
| GCTCCAGAGCAACATGCAGC+TGG | + | chr2_3:36550119-36550138 | None:intergenic | 60.0% | |
| CAGGCTCTTGCAGGGAACTG+TGG | - | chr2_3:36550242-36550261 | Msa0289960:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 36549972 | 36550814 | 36549972 | ID=Msa0289960;Name=Msa0289960 |
| chr2_3 | mRNA | 36549972 | 36550814 | 36549972 | ID=Msa0289960-mRNA-1;Parent=Msa0289960;Name=Msa0289960-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.66|0|0|3|0|112 |
| chr2_3 | exon | 36550728 | 36550814 | 36550728 | ID=Msa0289960-mRNA-1:exon:11975;Parent=Msa0289960-mRNA-1 |
| chr2_3 | exon | 36550477 | 36550718 | 36550477 | ID=Msa0289960-mRNA-1:exon:11974;Parent=Msa0289960-mRNA-1 |
| chr2_3 | exon | 36549972 | 36549978 | 36549972 | ID=Msa0289960-mRNA-1:exon:11973;Parent=Msa0289960-mRNA-1 |
| chr2_3 | CDS | 36550728 | 36550814 | 36550728 | ID=Msa0289960-mRNA-1:cds;Parent=Msa0289960-mRNA-1 |
| chr2_3 | CDS | 36550477 | 36550718 | 36550477 | ID=Msa0289960-mRNA-1:cds;Parent=Msa0289960-mRNA-1 |
| chr2_3 | CDS | 36549972 | 36549978 | 36549972 | ID=Msa0289960-mRNA-1:cds;Parent=Msa0289960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
