Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327760 | XP_039686545.1 | 93.860 | 114 | 4 | 1 | 1 | 111 | 1 | 114 | 6.16e-65 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327760 | sp|Q9ZPW9|NLTP8_ARATH | 52.294 | 109 | 49 | 1 | 6 | 111 | 7 | 115 | 1.15e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060670 | Msa0327760 | 0.806819 | 6.836252e-50 | -8.615850e-47 |
| Msa0105410 | Msa0327760 | 0.808752 | 2.653684e-50 | -8.615850e-47 |
| Msa0210610 | Msa0327760 | 0.860701 | 1.718837e-63 | -8.615850e-47 |
| Msa0217060 | Msa0327760 | 0.802542 | 5.339406e-49 | -8.615850e-47 |
| Msa0256710 | Msa0327760 | 0.859508 | 3.939545e-63 | -8.615850e-47 |
| Msa0289960 | Msa0327760 | 0.857485 | 1.580958e-62 | -8.615850e-47 |
| Msa0327760 | Msa0682110 | 0.802513 | 5.413185e-49 | -8.615850e-47 |
| Msa0327760 | Msa0682160 | 0.806992 | 6.282881e-50 | -8.615850e-47 |
| Msa0327760 | Msa1012800 | 0.809547 | 1.792508e-50 | -8.615850e-47 |
| Msa0327760 | Msa1094410 | 0.808762 | 2.641319e-50 | -8.615850e-47 |
| Msa0327760 | Msa1238600 | 0.828209 | 1.021084e-54 | -8.615850e-47 |
| Msa0327760 | Msa1255210 | 0.802502 | 5.442922e-49 | -8.615850e-47 |
| Msa0327760 | Msa1295650 | 0.800782 | 1.226056e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327760 | MtrunA17_Chr2g0309241 | 93.860 | 114 | 4 | 1 | 1 | 111 | 1 | 114 | 5.66e-69 | 202 |
| Msa0327760 | MtrunA17_Chr4g0012951 | 44.348 | 115 | 59 | 3 | 1 | 111 | 1 | 114 | 1.51e-24 | 90.1 |
| Msa0327760 | MtrunA17_Chr4g0013001 | 40.870 | 115 | 63 | 3 | 1 | 111 | 1 | 114 | 2.62e-21 | 81.6 |
| Msa0327760 | MtrunA17_Chr4g0012961 | 40.870 | 115 | 63 | 3 | 1 | 111 | 1 | 114 | 2.98e-21 | 81.6 |
| Msa0327760 | MtrunA17_Chr4g0012991 | 40.870 | 115 | 63 | 3 | 1 | 111 | 56 | 169 | 1.24e-20 | 81.6 |
| Msa0327760 | MtrunA17_Chr4g0012891 | 36.364 | 121 | 68 | 4 | 1 | 112 | 6 | 126 | 8.37e-19 | 75.5 |
| Msa0327760 | MtrunA17_Chr4g0013261 | 37.383 | 107 | 62 | 3 | 9 | 111 | 10 | 115 | 3.32e-18 | 73.9 |
| Msa0327760 | MtrunA17_Chr4g0013251 | 40.000 | 110 | 60 | 4 | 6 | 111 | 8 | 115 | 1.07e-17 | 72.4 |
| Msa0327760 | MtrunA17_Chr4g0013211 | 36.283 | 113 | 63 | 5 | 6 | 111 | 4 | 114 | 4.81e-16 | 68.2 |
| Msa0327760 | MtrunA17_Chr7g0244821 | 33.636 | 110 | 73 | 0 | 1 | 110 | 7 | 116 | 7.29e-16 | 68.2 |
| Msa0327760 | MtrunA17_Chr7g0244831 | 30.000 | 110 | 73 | 2 | 6 | 111 | 9 | 118 | 4.04e-15 | 65.9 |
| Msa0327760 | MtrunA17_Chr7g0244841 | 32.381 | 105 | 68 | 1 | 10 | 111 | 13 | 117 | 4.17e-15 | 65.9 |
| Msa0327760 | MtrunA17_Chr7g0233431 | 32.456 | 114 | 70 | 3 | 1 | 111 | 21 | 130 | 2.56e-14 | 64.3 |
| Msa0327760 | MtrunA17_Chr4g0012901 | 28.704 | 108 | 73 | 2 | 8 | 111 | 13 | 120 | 3.46e-14 | 63.5 |
| Msa0327760 | MtrunA17_Chr7g0244641 | 30.631 | 111 | 72 | 3 | 6 | 111 | 9 | 119 | 5.49e-13 | 60.5 |
| Msa0327760 | MtrunA17_Chr7g0244811 | 31.532 | 111 | 74 | 2 | 1 | 109 | 8 | 118 | 6.05e-13 | 60.5 |
| Msa0327760 | MtrunA17_Chr7g0244691 | 30.476 | 105 | 69 | 2 | 11 | 111 | 14 | 118 | 9.30e-13 | 60.1 |
| Msa0327760 | MtrunA17_Chr7g0244681 | 30.909 | 110 | 75 | 1 | 1 | 109 | 7 | 116 | 1.51e-12 | 59.3 |
| Msa0327760 | MtrunA17_Chr1g0165761 | 33.333 | 111 | 73 | 1 | 2 | 111 | 8 | 118 | 1.59e-12 | 59.3 |
| Msa0327760 | MtrunA17_Chr4g0012931 | 29.060 | 117 | 77 | 3 | 1 | 111 | 1 | 117 | 1.59e-11 | 57.0 |
| Msa0327760 | MtrunA17_Chr7g0244721 | 31.858 | 113 | 75 | 2 | 1 | 111 | 7 | 119 | 8.29e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327760 | AT2G18370.1 | 52.294 | 109 | 49 | 1 | 6 | 111 | 7 | 115 | 1.17e-34 | 115 |
| Msa0327760 | AT5G59320.1 | 41.739 | 115 | 62 | 3 | 1 | 111 | 1 | 114 | 1.31e-21 | 82.8 |
| Msa0327760 | AT5G59310.1 | 35.965 | 114 | 67 | 3 | 1 | 111 | 1 | 111 | 2.83e-19 | 76.6 |
| Msa0327760 | AT5G01870.1 | 38.318 | 107 | 59 | 3 | 11 | 111 | 10 | 115 | 8.90e-17 | 70.5 |
| Msa0327760 | AT3G51590.1 | 37.143 | 105 | 61 | 3 | 11 | 111 | 12 | 115 | 1.43e-16 | 70.1 |
| Msa0327760 | AT3G08770.1 | 37.500 | 96 | 53 | 3 | 22 | 111 | 18 | 112 | 1.20e-14 | 65.1 |
| Msa0327760 | AT3G08770.2 | 38.710 | 93 | 50 | 3 | 22 | 108 | 18 | 109 | 2.14e-14 | 64.3 |
| Msa0327760 | AT2G38540.1 | 33.621 | 116 | 69 | 4 | 1 | 111 | 5 | 117 | 8.89e-14 | 62.8 |
| Msa0327760 | AT2G15050.2 | 32.407 | 108 | 64 | 4 | 3 | 101 | 2 | 109 | 1.15e-13 | 62.4 |
| Msa0327760 | AT2G15050.3 | 32.407 | 108 | 64 | 4 | 3 | 101 | 2 | 109 | 1.32e-13 | 62.4 |
| Msa0327760 | AT2G15050.1 | 32.407 | 108 | 64 | 4 | 3 | 101 | 2 | 109 | 1.60e-13 | 62.4 |
| Msa0327760 | AT3G51600.1 | 32.479 | 117 | 70 | 4 | 3 | 111 | 2 | 117 | 7.33e-13 | 60.5 |
| Msa0327760 | AT4G33355.2 | 34.951 | 103 | 61 | 4 | 11 | 109 | 16 | 116 | 8.07e-13 | 60.5 |
| Msa0327760 | AT4G33355.1 | 32.727 | 110 | 68 | 4 | 6 | 111 | 11 | 118 | 9.09e-13 | 60.1 |
Find 22 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTAAAGAAGATTTCA+TGG | 0.308768 | 2_4:+39702927 | None:intergenic |
| GAAACCTTGTGTGAGCTATT+TGG | 0.326436 | 2_4:-39702824 | Msa0327760:CDS |
| CAATTGGCTCAAGCTCTTGC+AGG | 0.347675 | 2_4:-39702664 | Msa0327760:CDS |
| TACTTGGAACAATCAGCATC+TGG | 0.351088 | 2_4:+39702607 | None:intergenic |
| CCACCAGCTGCATGTTGCTC+TGG | 0.412892 | 2_4:-39702784 | Msa0327760:CDS |
| AATTGCAGCCTCTGAATTTG+AGG | 0.443900 | 2_4:+39702873 | None:intergenic |
| AGCTATTTGGTCAGTGGAAG+TGG | 0.469665 | 2_4:-39702811 | Msa0327760:CDS |
| TATTAAAATCAACTCACAAT+TGG | 0.472842 | 2_4:-39702680 | Msa0327760:CDS |
| ACTTGGAACAATCAGCATCT+GGG | 0.519962 | 2_4:+39702608 | None:intergenic |
| CTTTGTTGCCTCAAATTCAG+AGG | 0.521553 | 2_4:-39702881 | Msa0327760:CDS |
| GCTCCAGAGCAACATGCAGC+TGG | 0.542595 | 2_4:+39702781 | None:intergenic |
| CAAGCTCTTGCAGGGAACTG+TGG | 0.564691 | 2_4:-39702655 | Msa0327760:CDS |
| AGCATCTGGGGAGATACTGA+TGG | 0.572323 | 2_4:+39702621 | None:intergenic |
| AATTGGCTCAAGCTCTTGCA+GGG | 0.579413 | 2_4:-39702663 | Msa0327760:CDS |
| GCATCTGGGGAGATACTGAT+GGG | 0.583176 | 2_4:+39702622 | None:intergenic |
| CTTGGAACAATCAGCATCTG+GGG | 0.606095 | 2_4:+39702609 | None:intergenic |
| CCAGAGCAACATGCAGCTGG+TGG | 0.627457 | 2_4:+39702784 | None:intergenic |
| ATCAGCTGTATCAACATCTG+AGG | 0.627591 | 2_4:-39702746 | Msa0327760:CDS |
| TGTGTGAGCTATTTGGTCAG+TGG | 0.644010 | 2_4:-39702817 | Msa0327760:CDS |
| CTGACCAAATAGCTCACACA+AGG | 0.667347 | 2_4:+39702820 | None:intergenic |
| ATCTGGGGAGATACTGATGG+GGG | 0.675132 | 2_4:+39702624 | None:intergenic |
| CATCTGGGGAGATACTGATG+GGG | 0.712150 | 2_4:+39702623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAATAAGTAAATAA+AGG | + | chr2_4:39702778-39702797 | None:intergenic | 10.0% |
| !! | AAAGATAAATAAGTAAATAA+AGG | + | chr2_4:39702778-39702797 | None:intergenic | 10.0% |
| !!! | TTTAATGTATGATTTTTACT+TGG | + | chr2_4:39702420-39702439 | None:intergenic | 15.0% |
| !!! | ATGAAACAACTTTTTTTTAT+AGG | - | chr2_4:39702565-39702584 | Msa0327760:intron | 15.0% |
| !! | TTCATTAATCAATTTGATAT+TGG | + | chr2_4:39702672-39702691 | None:intergenic | 15.0% |
| !! | TTTGTAAAGCAAAATATAAA+AGG | + | chr2_4:39702714-39702733 | None:intergenic | 15.0% |
| !!! | TTTAATGTATGATTTTTACT+TGG | + | chr2_4:39702420-39702439 | None:intergenic | 15.0% |
| !!! | ATGAAACAACTTTTTTTTAT+AGG | - | chr2_4:39702565-39702584 | Msa0327760:intron | 15.0% |
| !! | TTCATTAATCAATTTGATAT+TGG | + | chr2_4:39702672-39702691 | None:intergenic | 15.0% |
| !! | TTTGTAAAGCAAAATATAAA+AGG | + | chr2_4:39702714-39702733 | None:intergenic | 15.0% |
| !! | TATTAAAATCAACTCACAAT+TGG | - | chr2_4:39702328-39702347 | Msa0327760:intron | 20.0% |
| !!! | AACTTTTTTTTATAGGAGAT+TGG | - | chr2_4:39702572-39702591 | Msa0327760:intron | 20.0% |
| !!! | ATTAGCTTTTATTTTAACCA+AGG | - | chr2_4:39702736-39702755 | Msa0327760:CDS | 20.0% |
| !! | GAAAGAAAAATTATTAACCT+TGG | + | chr2_4:39702756-39702775 | None:intergenic | 20.0% |
| !! | TATTAAAATCAACTCACAAT+TGG | - | chr2_4:39702328-39702347 | Msa0327760:intron | 20.0% |
| !!! | AACTTTTTTTTATAGGAGAT+TGG | - | chr2_4:39702572-39702591 | Msa0327760:intron | 20.0% |
| !!! | ATTAGCTTTTATTTTAACCA+AGG | - | chr2_4:39702736-39702755 | Msa0327760:CDS | 20.0% |
| !! | GAAAGAAAAATTATTAACCT+TGG | + | chr2_4:39702756-39702775 | None:intergenic | 20.0% |
| !!! | TGAGTTGATTTTAATACTCT+TGG | + | chr2_4:39702324-39702343 | None:intergenic | 25.0% |
| ! | TATGTTGATCCATAATGAAT+AGG | - | chr2_4:39702465-39702484 | Msa0327760:intron | 25.0% |
| ! | ATGTTGATCCATAATGAATA+GGG | - | chr2_4:39702466-39702485 | Msa0327760:intron | 25.0% |
| !! | GCAACTTTAAGAATAAAACT+GGG | - | chr2_4:39702611-39702630 | Msa0327760:CDS | 25.0% |
| ! | CAATTTGATATTGGAAAACT+TGG | + | chr2_4:39702663-39702682 | None:intergenic | 25.0% |
| !!! | TGAGTTGATTTTAATACTCT+TGG | + | chr2_4:39702324-39702343 | None:intergenic | 25.0% |
| ! | TATGTTGATCCATAATGAAT+AGG | - | chr2_4:39702465-39702484 | Msa0327760:intron | 25.0% |
| ! | ATGTTGATCCATAATGAATA+GGG | - | chr2_4:39702466-39702485 | Msa0327760:intron | 25.0% |
| !! | GCAACTTTAAGAATAAAACT+GGG | - | chr2_4:39702611-39702630 | Msa0327760:CDS | 25.0% |
| ! | CAATTTGATATTGGAAAACT+TGG | + | chr2_4:39702663-39702682 | None:intergenic | 25.0% |
| !! | GATTTTAATACTCTTGGAAG+TGG | + | chr2_4:39702318-39702337 | None:intergenic | 30.0% |
| CTTCGAGACTAATCTTTAAT+CGG | - | chr2_4:39702540-39702559 | Msa0327760:intron | 30.0% | |
| ! | GGCAACTTTAAGAATAAAAC+TGG | - | chr2_4:39702610-39702629 | Msa0327760:CDS | 30.0% |
| !! | GATTTTAATACTCTTGGAAG+TGG | + | chr2_4:39702318-39702337 | None:intergenic | 30.0% |
| CTTCGAGACTAATCTTTAAT+CGG | - | chr2_4:39702540-39702559 | Msa0327760:intron | 30.0% | |
| ! | GGCAACTTTAAGAATAAAAC+TGG | - | chr2_4:39702610-39702629 | Msa0327760:CDS | 30.0% |
| TTCATGCAGTGATGTGATTA+AGG | - | chr2_4:39702157-39702176 | Msa0327760:intron | 35.0% | |
| AGATTGGACTGCTTATCTAT+TGG | - | chr2_4:39702588-39702607 | Msa0327760:intron | 35.0% | |
| GATTGGACTGCTTATCTATT+GGG | - | chr2_4:39702589-39702608 | Msa0327760:intron | 35.0% | |
| !! | ATTGCAGGATTGGTTAATTG+AGG | - | chr2_4:39702812-39702831 | Msa0327760:CDS | 35.0% |
| TTCATGCAGTGATGTGATTA+AGG | - | chr2_4:39702157-39702176 | Msa0327760:intron | 35.0% | |
| AGATTGGACTGCTTATCTAT+TGG | - | chr2_4:39702588-39702607 | Msa0327760:intron | 35.0% | |
| GATTGGACTGCTTATCTATT+GGG | - | chr2_4:39702589-39702608 | Msa0327760:intron | 35.0% | |
| !! | ATTGCAGGATTGGTTAATTG+AGG | - | chr2_4:39702812-39702831 | Msa0327760:CDS | 35.0% |
| CTTTGTTGCCTCAAATTCAG+AGG | - | chr2_4:39702127-39702146 | Msa0327760:intron | 40.0% | |
| AATTGCAGCCTCTGAATTTG+AGG | + | chr2_4:39702138-39702157 | None:intergenic | 40.0% | |
| GAAACCTTGTGTGAGCTATT+TGG | - | chr2_4:39702184-39702203 | Msa0327760:intron | 40.0% | |
| ATCAGCTGTATCAACATCTG+AGG | - | chr2_4:39702262-39702281 | Msa0327760:intron | 40.0% | |
| ACTTGGAACAATCAGCATCT+GGG | + | chr2_4:39702403-39702422 | None:intergenic | 40.0% | |
| TACTTGGAACAATCAGCATC+TGG | + | chr2_4:39702404-39702423 | None:intergenic | 40.0% | |
| TGGCTACACCCTATTCATTA+TGG | + | chr2_4:39702477-39702496 | None:intergenic | 40.0% | |
| !! | TGTAGCGATTTTGATATCCG+AGG | + | chr2_4:39702500-39702519 | None:intergenic | 40.0% |
| GTTAATTGAGGCTTCGAAGT+GGG | - | chr2_4:39702824-39702843 | Msa0327760:CDS | 40.0% | |
| CTTTGTTGCCTCAAATTCAG+AGG | - | chr2_4:39702127-39702146 | Msa0327760:intron | 40.0% | |
| AATTGCAGCCTCTGAATTTG+AGG | + | chr2_4:39702138-39702157 | None:intergenic | 40.0% | |
| GAAACCTTGTGTGAGCTATT+TGG | - | chr2_4:39702184-39702203 | Msa0327760:intron | 40.0% | |
| ATCAGCTGTATCAACATCTG+AGG | - | chr2_4:39702262-39702281 | Msa0327760:intron | 40.0% | |
| ACTTGGAACAATCAGCATCT+GGG | + | chr2_4:39702403-39702422 | None:intergenic | 40.0% | |
| TACTTGGAACAATCAGCATC+TGG | + | chr2_4:39702404-39702423 | None:intergenic | 40.0% | |
| TGGCTACACCCTATTCATTA+TGG | + | chr2_4:39702477-39702496 | None:intergenic | 40.0% | |
| !! | TGTAGCGATTTTGATATCCG+AGG | + | chr2_4:39702500-39702519 | None:intergenic | 40.0% |
| GTTAATTGAGGCTTCGAAGT+GGG | - | chr2_4:39702824-39702843 | Msa0327760:CDS | 40.0% | |
| CTGACCAAATAGCTCACACA+AGG | + | chr2_4:39702191-39702210 | None:intergenic | 45.0% | |
| TGTGTGAGCTATTTGGTCAG+TGG | - | chr2_4:39702191-39702210 | Msa0327760:intron | 45.0% | |
| AGCTATTTGGTCAGTGGAAG+TGG | - | chr2_4:39702197-39702216 | Msa0327760:intron | 45.0% | |
| ! | AATTGGCTCAAGCTCTTGCA+GGG | - | chr2_4:39702345-39702364 | Msa0327760:intron | 45.0% |
| CTTGGAACAATCAGCATCTG+GGG | + | chr2_4:39702402-39702421 | None:intergenic | 45.0% | |
| !! | AGCGATTTTGATATCCGAGG+TGG | + | chr2_4:39702497-39702516 | None:intergenic | 45.0% |
| TTTGTTGCTGCGTCTATTGC+AGG | - | chr2_4:39702797-39702816 | Msa0327760:CDS | 45.0% | |
| GGTTAATTGAGGCTTCGAAG+TGG | - | chr2_4:39702823-39702842 | Msa0327760:CDS | 45.0% | |
| CTGACCAAATAGCTCACACA+AGG | + | chr2_4:39702191-39702210 | None:intergenic | 45.0% | |
| TGTGTGAGCTATTTGGTCAG+TGG | - | chr2_4:39702191-39702210 | Msa0327760:intron | 45.0% | |
| AGCTATTTGGTCAGTGGAAG+TGG | - | chr2_4:39702197-39702216 | Msa0327760:intron | 45.0% | |
| ! | AATTGGCTCAAGCTCTTGCA+GGG | - | chr2_4:39702345-39702364 | Msa0327760:intron | 45.0% |
| CTTGGAACAATCAGCATCTG+GGG | + | chr2_4:39702402-39702421 | None:intergenic | 45.0% | |
| !! | AGCGATTTTGATATCCGAGG+TGG | + | chr2_4:39702497-39702516 | None:intergenic | 45.0% |
| TTTGTTGCTGCGTCTATTGC+AGG | - | chr2_4:39702797-39702816 | Msa0327760:CDS | 45.0% | |
| GGTTAATTGAGGCTTCGAAG+TGG | - | chr2_4:39702823-39702842 | Msa0327760:CDS | 45.0% | |
| ! | CAATTGGCTCAAGCTCTTGC+AGG | - | chr2_4:39702344-39702363 | Msa0327760:intron | 50.0% |
| ATCTGGGGAGATACTGATGG+GGG | + | chr2_4:39702387-39702406 | None:intergenic | 50.0% | |
| CATCTGGGGAGATACTGATG+GGG | + | chr2_4:39702388-39702407 | None:intergenic | 50.0% | |
| GCATCTGGGGAGATACTGAT+GGG | + | chr2_4:39702389-39702408 | None:intergenic | 50.0% | |
| AGCATCTGGGGAGATACTGA+TGG | + | chr2_4:39702390-39702409 | None:intergenic | 50.0% | |
| TGAATAGGGTGTAGCCACCT+CGG | - | chr2_4:39702480-39702499 | Msa0327760:intron | 50.0% | |
| TGCTGCGTCTATTGCAGGAT+TGG | - | chr2_4:39702802-39702821 | Msa0327760:CDS | 50.0% | |
| TGAGGCTTCGAAGTGGGAAT+TGG | - | chr2_4:39702830-39702849 | Msa0327760:CDS | 50.0% | |
| GCTTCGAAGTGGGAATTGGA+GGG | - | chr2_4:39702834-39702853 | Msa0327760:intron | 50.0% | |
| ! | CAATTGGCTCAAGCTCTTGC+AGG | - | chr2_4:39702344-39702363 | Msa0327760:intron | 50.0% |
| ATCTGGGGAGATACTGATGG+GGG | + | chr2_4:39702387-39702406 | None:intergenic | 50.0% | |
| CATCTGGGGAGATACTGATG+GGG | + | chr2_4:39702388-39702407 | None:intergenic | 50.0% | |
| GCATCTGGGGAGATACTGAT+GGG | + | chr2_4:39702389-39702408 | None:intergenic | 50.0% | |
| AGCATCTGGGGAGATACTGA+TGG | + | chr2_4:39702390-39702409 | None:intergenic | 50.0% | |
| TGAATAGGGTGTAGCCACCT+CGG | - | chr2_4:39702480-39702499 | Msa0327760:intron | 50.0% | |
| TGCTGCGTCTATTGCAGGAT+TGG | - | chr2_4:39702802-39702821 | Msa0327760:CDS | 50.0% | |
| TGAGGCTTCGAAGTGGGAAT+TGG | - | chr2_4:39702830-39702849 | Msa0327760:CDS | 50.0% | |
| GCTTCGAAGTGGGAATTGGA+GGG | - | chr2_4:39702834-39702853 | Msa0327760:intron | 50.0% | |
| CAAGCTCTTGCAGGGAACTG+TGG | - | chr2_4:39702353-39702372 | Msa0327760:intron | 55.0% | |
| GGCTTCGAAGTGGGAATTGG+AGG | - | chr2_4:39702833-39702852 | Msa0327760:intron | 55.0% | |
| CAAGCTCTTGCAGGGAACTG+TGG | - | chr2_4:39702353-39702372 | Msa0327760:intron | 55.0% | |
| GGCTTCGAAGTGGGAATTGG+AGG | - | chr2_4:39702833-39702852 | Msa0327760:intron | 55.0% | |
| CCAGAGCAACATGCAGCTGG+TGG | + | chr2_4:39702227-39702246 | None:intergenic | 60.0% | |
| CCACCAGCTGCATGTTGCTC+TGG | - | chr2_4:39702224-39702243 | Msa0327760:intron | 60.0% | |
| GCTCCAGAGCAACATGCAGC+TGG | + | chr2_4:39702230-39702249 | None:intergenic | 60.0% | |
| CCAGAGCAACATGCAGCTGG+TGG | + | chr2_4:39702227-39702246 | None:intergenic | 60.0% | |
| CCACCAGCTGCATGTTGCTC+TGG | - | chr2_4:39702224-39702243 | Msa0327760:intron | 60.0% | |
| GCTCCAGAGCAACATGCAGC+TGG | + | chr2_4:39702230-39702249 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 39702083 | 39702947 | 39702083 | ID=Msa0327760;Name=Msa0327760 |
| chr2_4 | mRNA | 39702083 | 39702947 | 39702083 | ID=Msa0327760-mRNA-1;Parent=Msa0327760;Name=Msa0327760-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.66|0|0|3|0|112 |
| chr2_4 | exon | 39702861 | 39702947 | 39702861 | ID=Msa0327760-mRNA-1:exon:12036;Parent=Msa0327760-mRNA-1 |
| chr2_4 | exon | 39702610 | 39702851 | 39702610 | ID=Msa0327760-mRNA-1:exon:12035;Parent=Msa0327760-mRNA-1 |
| chr2_4 | exon | 39702083 | 39702089 | 39702083 | ID=Msa0327760-mRNA-1:exon:12034;Parent=Msa0327760-mRNA-1 |
| chr2_4 | CDS | 39702861 | 39702947 | 39702861 | ID=Msa0327760-mRNA-1:cds;Parent=Msa0327760-mRNA-1 |
| chr2_4 | CDS | 39702610 | 39702851 | 39702610 | ID=Msa0327760-mRNA-1:cds;Parent=Msa0327760-mRNA-1 |
| chr2_4 | CDS | 39702083 | 39702089 | 39702083 | ID=Msa0327760-mRNA-1:cds;Parent=Msa0327760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
