Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210610 | XP_039686545.1 | 94.783 | 115 | 3 | 1 | 1 | 112 | 1 | 115 | 1.16e-66 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210610 | sp|Q9ZPW9|NLTP8_ARATH | 53.636 | 110 | 48 | 1 | 6 | 112 | 7 | 116 | 4.60e-35 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210610 | G7IQQ8 | 94.783 | 115 | 3 | 1 | 1 | 112 | 1 | 115 | 5.52e-67 | 206 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008440 | Msa0210610 | 0.842210 | 2.971581e-58 | -8.615850e-47 |
| Msa0015950 | Msa0210610 | 0.827044 | 1.944421e-54 | -8.615850e-47 |
| Msa0015960 | Msa0210610 | 0.831104 | 2.016724e-55 | -8.615850e-47 |
| Msa0016070 | Msa0210610 | 0.831203 | 1.907072e-55 | -8.615850e-47 |
| Msa0016080 | Msa0210610 | 0.836582 | 8.602011e-57 | -8.615850e-47 |
| Msa0028690 | Msa0210610 | 0.805530 | 1.276721e-49 | -8.615850e-47 |
| Msa0057110 | Msa0210610 | 0.848118 | 7.511725e-60 | -8.615850e-47 |
| Msa0057170 | Msa0210610 | 0.849096 | 4.025524e-60 | -8.615850e-47 |
| Msa0060670 | Msa0210610 | 0.842187 | 3.013907e-58 | -8.615850e-47 |
| Msa0105410 | Msa0210610 | 0.806044 | 9.958891e-50 | -8.615850e-47 |
| Msa0119240 | Msa0210610 | 0.803610 | 3.211067e-49 | -8.615850e-47 |
| Msa0168750 | Msa0210610 | 0.809749 | 1.622705e-50 | -8.615850e-47 |
| Msa0189680 | Msa0210610 | 0.815360 | 9.620467e-52 | -8.615850e-47 |
| Msa0189990 | Msa0210610 | 0.806024 | 1.005532e-49 | -8.615850e-47 |
| Msa0210610 | Msa0217060 | 0.805309 | 1.420939e-49 | -8.615850e-47 |
| Msa0210610 | Msa0218500 | 0.836830 | 7.432797e-57 | -8.615850e-47 |
| Msa0210610 | Msa0218610 | 0.832792 | 7.722045e-56 | -8.615850e-47 |
| Msa0210610 | Msa0219340 | 0.841892 | 3.607222e-58 | -8.615850e-47 |
| Msa0210610 | Msa0231990 | 0.814691 | 1.354165e-51 | -8.615850e-47 |
| Msa0210610 | Msa0232060 | 0.814198 | 1.740984e-51 | -8.615850e-47 |
| Msa0210610 | Msa0256710 | 0.848069 | 7.751266e-60 | -8.615850e-47 |
| Msa0210610 | Msa0256920 | 0.815118 | 1.089024e-51 | -8.615850e-47 |
| Msa0210610 | Msa0258260 | 0.808217 | 3.451380e-50 | -8.615850e-47 |
| Msa0210610 | Msa0282960 | 0.802027 | 6.816538e-49 | -8.615850e-47 |
| Msa0210610 | Msa0289960 | 0.952309 | 3.198023e-110 | -8.615850e-47 |
| Msa0210610 | Msa0297340 | 0.820122 | 8.102302e-53 | -8.615850e-47 |
| Msa0210610 | Msa0297900 | 0.812021 | 5.226608e-51 | -8.615850e-47 |
| Msa0210610 | Msa0297910 | 0.879623 | 1.070985e-69 | -8.615850e-47 |
| Msa0210610 | Msa0307740 | 0.833747 | 4.465189e-56 | -8.615850e-47 |
| Msa0210610 | Msa0327760 | 0.860701 | 1.718837e-63 | -8.615850e-47 |
| Msa0210610 | Msa0343210 | 0.866200 | 3.392184e-65 | -8.615850e-47 |
| Msa0210610 | Msa0357310 | 0.803514 | 3.361651e-49 | -8.615850e-47 |
| Msa0210610 | Msa0383480 | 0.820656 | 6.112657e-53 | -8.615850e-47 |
| Msa0210610 | Msa0433650 | 0.804954 | 1.686011e-49 | -8.615850e-47 |
| Msa0210610 | Msa0477420 | 0.800245 | 1.577518e-48 | -8.615850e-47 |
| Msa0210610 | Msa0521490 | 0.808511 | 2.988000e-50 | -8.615850e-47 |
| Msa0210610 | Msa0661410 | 0.822963 | 1.787796e-53 | -8.615850e-47 |
| Msa0210610 | Msa0661420 | 0.831053 | 2.076132e-55 | -8.615850e-47 |
| Msa0210610 | Msa0682110 | 0.839916 | 1.189685e-57 | -8.615850e-47 |
| Msa0210610 | Msa0682160 | 0.831727 | 1.416805e-55 | -8.615850e-47 |
| Msa0210610 | Msa0736920 | 0.807144 | 5.835314e-50 | -8.615850e-47 |
| Msa0210610 | Msa0769540 | 0.806944 | 6.430948e-50 | -8.615850e-47 |
| Msa0210610 | Msa0778570 | 0.806443 | 8.204201e-50 | -8.615850e-47 |
| Msa0210610 | Msa0810330 | 0.850380 | 1.762455e-60 | -8.615850e-47 |
| Msa0210610 | Msa0812720 | 0.808679 | 2.750410e-50 | -8.615850e-47 |
| Msa0210610 | Msa0815940 | 0.801228 | 9.940204e-49 | -8.615850e-47 |
| Msa0210610 | Msa0850640 | 0.817004 | 4.127907e-52 | -8.615850e-47 |
| Msa0210610 | Msa0870510 | 0.810314 | 1.226004e-50 | -8.615850e-47 |
| Msa0210610 | Msa0881280 | 0.809167 | 2.163087e-50 | -8.615850e-47 |
| Msa0210610 | Msa0905570 | 0.812975 | 3.234197e-51 | -8.615850e-47 |
| Msa0210610 | Msa0907880 | 0.851419 | 8.986091e-61 | -8.615850e-47 |
| Msa0210610 | Msa0931620 | 0.847256 | 1.297232e-59 | -8.615850e-47 |
| Msa0210610 | Msa0946330 | 0.813226 | 2.849935e-51 | -8.615850e-47 |
| Msa0210610 | Msa0974710 | 0.819032 | 1.436569e-52 | -8.615850e-47 |
| Msa0210610 | Msa1012800 | 0.819878 | 9.217578e-53 | -8.615850e-47 |
| Msa0210610 | Msa1131270 | 0.852888 | 3.435567e-61 | -8.615850e-47 |
| Msa0210610 | Msa1167310 | 0.803943 | 2.739138e-49 | -8.615850e-47 |
| Msa0210610 | Msa1202800 | 0.848009 | 8.052812e-60 | -8.615850e-47 |
| Msa0210610 | Msa1203440 | 0.861201 | 1.211487e-63 | -8.615850e-47 |
| Msa0210610 | Msa1211940 | 0.814489 | 1.501122e-51 | -8.615850e-47 |
| Msa0210610 | Msa1238190 | 0.814545 | 1.458939e-51 | -8.615850e-47 |
| Msa0210610 | Msa1238600 | 0.825946 | 3.552371e-54 | -8.615850e-47 |
| Msa0210610 | Msa1255210 | 0.847076 | 1.453385e-59 | -8.615850e-47 |
| Msa0210610 | Msa1255690 | 0.830636 | 2.626390e-55 | -8.615850e-47 |
| Msa0210610 | Msa1295650 | 0.847370 | 1.207127e-59 | -8.615850e-47 |
| Msa0210610 | Msa1323010 | 0.813847 | 2.080807e-51 | -8.615850e-47 |
| Msa0210610 | Msa1323070 | 0.807632 | 4.598386e-50 | -8.615850e-47 |
| Msa0210610 | Msa1343280 | 0.800776 | 1.229828e-48 | -8.615850e-47 |
| Msa0210610 | Msa1343600 | 0.809101 | 2.234992e-50 | -8.615850e-47 |
| Msa0210610 | Msa1348540 | 0.843044 | 1.784836e-58 | -8.615850e-47 |
| Msa0210610 | Msa1386830 | 0.801519 | 8.667253e-49 | -8.615850e-47 |
| Msa0210610 | Msa1413450 | 0.800696 | 1.276997e-48 | -8.615850e-47 |
| Msa0210610 | Msa1416130 | 0.859780 | 3.262928e-63 | -8.615850e-47 |
| Msa0210610 | Msa1430950 | 0.831450 | 1.658214e-55 | -8.615850e-47 |
| Msa0210610 | Msa1433040 | 0.823382 | 1.427108e-53 | -8.615850e-47 |
| Msa0210610 | Msa1439250 | 0.825473 | 4.599970e-54 | -8.615850e-47 |
| Msa0210610 | Msa1439270 | 0.807087 | 5.999140e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210610 | MtrunA17_Chr2g0309241 | 94.783 | 115 | 3 | 1 | 1 | 112 | 1 | 115 | 1.06e-70 | 206 |
| Msa0210610 | MtrunA17_Chr4g0012951 | 44.348 | 115 | 59 | 3 | 1 | 111 | 1 | 114 | 2.62e-24 | 89.4 |
| Msa0210610 | MtrunA17_Chr4g0013001 | 40.870 | 115 | 63 | 3 | 1 | 111 | 1 | 114 | 4.10e-21 | 81.3 |
| Msa0210610 | MtrunA17_Chr4g0012961 | 40.870 | 115 | 63 | 3 | 1 | 111 | 1 | 114 | 4.62e-21 | 81.3 |
| Msa0210610 | MtrunA17_Chr4g0012991 | 40.870 | 115 | 63 | 3 | 1 | 111 | 56 | 169 | 2.70e-20 | 80.5 |
| Msa0210610 | MtrunA17_Chr4g0012891 | 35.833 | 120 | 68 | 3 | 1 | 111 | 6 | 125 | 8.21e-19 | 75.5 |
| Msa0210610 | MtrunA17_Chr4g0013261 | 38.793 | 116 | 65 | 4 | 1 | 111 | 1 | 115 | 1.94e-18 | 74.3 |
| Msa0210610 | MtrunA17_Chr4g0013251 | 45.238 | 84 | 44 | 2 | 29 | 111 | 33 | 115 | 8.19e-18 | 72.8 |
| Msa0210610 | MtrunA17_Chr7g0244841 | 35.238 | 105 | 65 | 1 | 10 | 111 | 13 | 117 | 6.87e-17 | 70.5 |
| Msa0210610 | MtrunA17_Chr4g0013211 | 37.168 | 113 | 62 | 5 | 6 | 111 | 4 | 114 | 1.45e-16 | 69.7 |
| Msa0210610 | MtrunA17_Chr7g0244821 | 33.636 | 110 | 73 | 0 | 1 | 110 | 7 | 116 | 6.01e-16 | 68.2 |
| Msa0210610 | MtrunA17_Chr4g0012901 | 30.556 | 108 | 71 | 2 | 8 | 111 | 13 | 120 | 1.22e-15 | 67.4 |
| Msa0210610 | MtrunA17_Chr7g0244831 | 30.000 | 110 | 73 | 2 | 6 | 111 | 9 | 118 | 5.36e-15 | 65.9 |
| Msa0210610 | MtrunA17_Chr7g0233431 | 33.333 | 114 | 69 | 3 | 1 | 111 | 21 | 130 | 1.91e-14 | 64.7 |
| Msa0210610 | MtrunA17_Chr7g0244691 | 31.429 | 105 | 68 | 2 | 11 | 111 | 14 | 118 | 1.51e-13 | 62.0 |
| Msa0210610 | MtrunA17_Chr7g0244811 | 30.702 | 114 | 77 | 2 | 1 | 112 | 8 | 121 | 2.07e-13 | 61.6 |
| Msa0210610 | MtrunA17_Chr7g0244641 | 30.631 | 111 | 72 | 3 | 6 | 111 | 9 | 119 | 6.52e-13 | 60.5 |
| Msa0210610 | MtrunA17_Chr1g0165761 | 33.036 | 112 | 74 | 1 | 2 | 112 | 8 | 119 | 6.58e-13 | 60.5 |
| Msa0210610 | MtrunA17_Chr7g0244681 | 30.631 | 111 | 76 | 1 | 1 | 110 | 7 | 117 | 1.25e-12 | 59.7 |
| Msa0210610 | MtrunA17_Chr4g0012931 | 29.915 | 117 | 76 | 3 | 1 | 111 | 1 | 117 | 3.85e-12 | 58.5 |
| Msa0210610 | MtrunA17_Chr7g0244671 | 32.075 | 106 | 67 | 3 | 10 | 110 | 13 | 118 | 1.37e-11 | 57.4 |
| Msa0210610 | MtrunA17_Chr7g0244721 | 31.858 | 113 | 75 | 2 | 1 | 111 | 7 | 119 | 3.00e-11 | 55.8 |
| Msa0210610 | MtrunA17_Chr7g0244791 | 32.075 | 106 | 68 | 2 | 10 | 111 | 18 | 123 | 5.27e-11 | 55.5 |
| Msa0210610 | MtrunA17_Chr3g0107481 | 27.523 | 109 | 72 | 4 | 8 | 111 | 7 | 113 | 5.47e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210610 | AT2G18370.1 | 53.636 | 110 | 48 | 1 | 6 | 112 | 7 | 116 | 4.68e-36 | 119 |
| Msa0210610 | AT5G59320.1 | 40.870 | 115 | 63 | 3 | 1 | 111 | 1 | 114 | 6.62e-21 | 80.9 |
| Msa0210610 | AT5G59310.1 | 36.842 | 114 | 66 | 3 | 1 | 111 | 1 | 111 | 1.22e-19 | 77.8 |
| Msa0210610 | AT3G51590.1 | 38.095 | 105 | 60 | 3 | 11 | 111 | 12 | 115 | 3.82e-17 | 71.6 |
| Msa0210610 | AT5G01870.1 | 40.777 | 103 | 53 | 4 | 15 | 111 | 15 | 115 | 1.78e-16 | 69.7 |
| Msa0210610 | AT3G08770.1 | 38.542 | 96 | 52 | 3 | 22 | 111 | 18 | 112 | 6.20e-15 | 65.9 |
| Msa0210610 | AT3G08770.2 | 38.710 | 93 | 50 | 3 | 22 | 108 | 18 | 109 | 2.09e-14 | 64.3 |
| Msa0210610 | AT2G38540.1 | 36.458 | 96 | 55 | 3 | 21 | 111 | 23 | 117 | 1.13e-13 | 62.8 |
| Msa0210610 | AT4G33355.2 | 34.615 | 104 | 62 | 4 | 11 | 110 | 16 | 117 | 1.79e-13 | 62.0 |
| Msa0210610 | AT4G33355.1 | 35.238 | 105 | 62 | 4 | 11 | 111 | 16 | 118 | 2.02e-13 | 62.0 |
| Msa0210610 | AT3G51600.1 | 33.962 | 106 | 64 | 3 | 11 | 111 | 13 | 117 | 2.53e-13 | 61.6 |
| Msa0210610 | AT2G15050.2 | 31.481 | 108 | 65 | 4 | 3 | 101 | 2 | 109 | 4.17e-13 | 61.2 |
| Msa0210610 | AT2G15050.3 | 31.481 | 108 | 65 | 4 | 3 | 101 | 2 | 109 | 4.63e-13 | 61.2 |
| Msa0210610 | AT2G15050.1 | 31.481 | 108 | 65 | 4 | 3 | 101 | 2 | 109 | 5.87e-13 | 60.8 |
Find 28 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTAAAGAAGATTTCA+TGG | 0.285915 | 2_1:-50836139 | None:intergenic |
| CAATTGGCTCAGGCTCTTGC+AGG | 0.325545 | 2_1:+50836402 | Msa0210610:CDS |
| GAAACCTTGTGTGAGCTATT+TGG | 0.326436 | 2_1:+50836242 | Msa0210610:CDS |
| TACTTGGAACAATCAGCATC+TGG | 0.351088 | 2_1:-50836459 | None:intergenic |
| TGAGGCTTCGAAGTGGGAAT+TGG | 0.374090 | 2_1:+50836889 | Msa0210610:three_prime_UTR |
| CCACCAGCTGCATGTTGCTC+TGG | 0.412892 | 2_1:+50836282 | Msa0210610:CDS |
| AGCTATTTGGTCAGTGGAAG+TGG | 0.469665 | 2_1:+50836255 | Msa0210610:CDS |
| TATTAAAATCAACTCACAAT+TGG | 0.472842 | 2_1:+50836386 | Msa0210610:CDS |
| GGCTTCGAAGTGGGAATTGG+AGG | 0.493556 | 2_1:+50836892 | Msa0210610:three_prime_UTR |
| ATTGCAGGATTGGTTAATTG+AGG | 0.494673 | 2_1:+50836871 | Msa0210610:intron |
| CTTTGTTGCTTCAAATTCAG+AGG | 0.497380 | 2_1:+50836185 | Msa0210610:CDS |
| AATCAACTCACAATTGGCTC+AGG | 0.514463 | 2_1:+50836392 | Msa0210610:CDS |
| ACTTGGAACAATCAGCATCT+GGG | 0.519962 | 2_1:-50836458 | None:intergenic |
| GCTCCAGAGCAACATGCAGC+TGG | 0.542595 | 2_1:-50836285 | None:intergenic |
| CAGGCTCTTGCAGGGAACTG+TGG | 0.566184 | 2_1:+50836411 | Msa0210610:CDS |
| GTTAATTGAGGCTTCGAAGT+GGG | 0.567258 | 2_1:+50836883 | Msa0210610:exon |
| AGCATCTGGGGAGATACTGA+TGG | 0.572323 | 2_1:-50836445 | None:intergenic |
| GCATCTGGGGAGATACTGAT+GGG | 0.583176 | 2_1:-50836444 | None:intergenic |
| AATTGGCTCAGGCTCTTGCA+GGG | 0.601314 | 2_1:+50836403 | Msa0210610:CDS |
| CTTGGAACAATCAGCATCTG+GGG | 0.606095 | 2_1:-50836457 | None:intergenic |
| CCAGAGCAACATGCAGCTGG+TGG | 0.627457 | 2_1:-50836282 | None:intergenic |
| ATCAGCTGTATCAACATCTG+AGG | 0.627591 | 2_1:+50836320 | Msa0210610:CDS |
| TGTGTGAGCTATTTGGTCAG+TGG | 0.644010 | 2_1:+50836249 | Msa0210610:CDS |
| GCTTCGAAGTGGGAATTGGA+GGG | 0.644556 | 2_1:+50836893 | Msa0210610:three_prime_UTR |
| CTGACCAAATAGCTCACACA+AGG | 0.667347 | 2_1:-50836246 | None:intergenic |
| GGTTAATTGAGGCTTCGAAG+TGG | 0.670085 | 2_1:+50836882 | Msa0210610:exon |
| ATCTGGGGAGATACTGATGG+GGG | 0.675132 | 2_1:-50836442 | None:intergenic |
| CATCTGGGGAGATACTGATG+GGG | 0.712150 | 2_1:-50836443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAATAAGTAAATAA+AGG | - | chr2_1:50836837-50836856 | None:intergenic | 10.0% |
| !! | AAAGATAAATAAGTAAATAA+AGG | - | chr2_1:50836837-50836856 | None:intergenic | 10.0% |
| !!! | TTTAATGTATGATTTTTACT+TGG | - | chr2_1:50836478-50836497 | None:intergenic | 15.0% |
| !!! | TGAAACAACTTTTTTTTTAT+AGG | + | chr2_1:50836624-50836643 | Msa0210610:intron | 15.0% |
| !! | TTCATTAATCAATTTGATAT+TGG | - | chr2_1:50836731-50836750 | None:intergenic | 15.0% |
| !! | TTTGTAAAGCAAAATATAAA+AGG | - | chr2_1:50836773-50836792 | None:intergenic | 15.0% |
| !!! | TTTAATGTATGATTTTTACT+TGG | - | chr2_1:50836478-50836497 | None:intergenic | 15.0% |
| !!! | TGAAACAACTTTTTTTTTAT+AGG | + | chr2_1:50836624-50836643 | Msa0210610:intron | 15.0% |
| !! | TTCATTAATCAATTTGATAT+TGG | - | chr2_1:50836731-50836750 | None:intergenic | 15.0% |
| !! | TTTGTAAAGCAAAATATAAA+AGG | - | chr2_1:50836773-50836792 | None:intergenic | 15.0% |
| !! | TATTAAAATCAACTCACAAT+TGG | + | chr2_1:50836386-50836405 | Msa0210610:CDS | 20.0% |
| !!! | ACTTTTTTTTTATAGGAGAT+TGG | + | chr2_1:50836631-50836650 | Msa0210610:intron | 20.0% |
| !!! | ATTAGCTTTTATTTTAACCA+AGG | + | chr2_1:50836795-50836814 | Msa0210610:intron | 20.0% |
| !! | GAAAGAAAAATTATTAACCT+TGG | - | chr2_1:50836815-50836834 | None:intergenic | 20.0% |
| !! | TATTAAAATCAACTCACAAT+TGG | + | chr2_1:50836386-50836405 | Msa0210610:CDS | 20.0% |
| !!! | ACTTTTTTTTTATAGGAGAT+TGG | + | chr2_1:50836631-50836650 | Msa0210610:intron | 20.0% |
| !!! | ATTAGCTTTTATTTTAACCA+AGG | + | chr2_1:50836795-50836814 | Msa0210610:intron | 20.0% |
| !! | GAAAGAAAAATTATTAACCT+TGG | - | chr2_1:50836815-50836834 | None:intergenic | 20.0% |
| !!! | TGAGTTGATTTTAATACTCT+TGG | - | chr2_1:50836382-50836401 | None:intergenic | 25.0% |
| ! | TATGTTGATCCATAATGAAT+AGG | + | chr2_1:50836523-50836542 | Msa0210610:intron | 25.0% |
| ! | ATGTTGATCCATAATGAATA+GGG | + | chr2_1:50836524-50836543 | Msa0210610:intron | 25.0% |
| !! | GCAACTTTAAGAATAAAACT+GGG | + | chr2_1:50836670-50836689 | Msa0210610:intron | 25.0% |
| ! | CAATTTGATATTGGAAAACT+TGG | - | chr2_1:50836722-50836741 | None:intergenic | 25.0% |
| !!! | TGAGTTGATTTTAATACTCT+TGG | - | chr2_1:50836382-50836401 | None:intergenic | 25.0% |
| ! | TATGTTGATCCATAATGAAT+AGG | + | chr2_1:50836523-50836542 | Msa0210610:intron | 25.0% |
| ! | ATGTTGATCCATAATGAATA+GGG | + | chr2_1:50836524-50836543 | Msa0210610:intron | 25.0% |
| !! | GCAACTTTAAGAATAAAACT+GGG | + | chr2_1:50836670-50836689 | Msa0210610:intron | 25.0% |
| ! | CAATTTGATATTGGAAAACT+TGG | - | chr2_1:50836722-50836741 | None:intergenic | 25.0% |
| !! | GATTTTAATACTCTTGGAAG+TGG | - | chr2_1:50836376-50836395 | None:intergenic | 30.0% |
| CTTCGAGACTAATCTTTAAT+CGG | + | chr2_1:50836598-50836617 | Msa0210610:intron | 30.0% | |
| ! | GGCAACTTTAAGAATAAAAC+TGG | + | chr2_1:50836669-50836688 | Msa0210610:intron | 30.0% |
| !! | GATTTTAATACTCTTGGAAG+TGG | - | chr2_1:50836376-50836395 | None:intergenic | 30.0% |
| CTTCGAGACTAATCTTTAAT+CGG | + | chr2_1:50836598-50836617 | Msa0210610:intron | 30.0% | |
| ! | GGCAACTTTAAGAATAAAAC+TGG | + | chr2_1:50836669-50836688 | Msa0210610:intron | 30.0% |
| ! | CTTTGTTGCTTCAAATTCAG+AGG | + | chr2_1:50836185-50836204 | Msa0210610:CDS | 35.0% |
| TTCATGCAGTGATGTGATTA+AGG | + | chr2_1:50836215-50836234 | Msa0210610:intron | 35.0% | |
| AGATTGGACTGCTTATCTAT+TGG | + | chr2_1:50836647-50836666 | Msa0210610:intron | 35.0% | |
| GATTGGACTGCTTATCTATT+GGG | + | chr2_1:50836648-50836667 | Msa0210610:intron | 35.0% | |
| !! | ATTGCAGGATTGGTTAATTG+AGG | + | chr2_1:50836871-50836890 | Msa0210610:intron | 35.0% |
| ! | CTTTGTTGCTTCAAATTCAG+AGG | + | chr2_1:50836185-50836204 | Msa0210610:CDS | 35.0% |
| TTCATGCAGTGATGTGATTA+AGG | + | chr2_1:50836215-50836234 | Msa0210610:intron | 35.0% | |
| AGATTGGACTGCTTATCTAT+TGG | + | chr2_1:50836647-50836666 | Msa0210610:intron | 35.0% | |
| GATTGGACTGCTTATCTATT+GGG | + | chr2_1:50836648-50836667 | Msa0210610:intron | 35.0% | |
| !! | ATTGCAGGATTGGTTAATTG+AGG | + | chr2_1:50836871-50836890 | Msa0210610:intron | 35.0% |
| GAAACCTTGTGTGAGCTATT+TGG | + | chr2_1:50836242-50836261 | Msa0210610:CDS | 40.0% | |
| ATCAGCTGTATCAACATCTG+AGG | + | chr2_1:50836320-50836339 | Msa0210610:CDS | 40.0% | |
| ! | AATCAACTCACAATTGGCTC+AGG | + | chr2_1:50836392-50836411 | Msa0210610:CDS | 40.0% |
| ACTTGGAACAATCAGCATCT+GGG | - | chr2_1:50836461-50836480 | None:intergenic | 40.0% | |
| TACTTGGAACAATCAGCATC+TGG | - | chr2_1:50836462-50836481 | None:intergenic | 40.0% | |
| TGGCTACACCCTATTCATTA+TGG | - | chr2_1:50836535-50836554 | None:intergenic | 40.0% | |
| GTTAATTGAGGCTTCGAAGT+GGG | + | chr2_1:50836883-50836902 | Msa0210610:exon | 40.0% | |
| GAAACCTTGTGTGAGCTATT+TGG | + | chr2_1:50836242-50836261 | Msa0210610:CDS | 40.0% | |
| ATCAGCTGTATCAACATCTG+AGG | + | chr2_1:50836320-50836339 | Msa0210610:CDS | 40.0% | |
| ! | AATCAACTCACAATTGGCTC+AGG | + | chr2_1:50836392-50836411 | Msa0210610:CDS | 40.0% |
| ACTTGGAACAATCAGCATCT+GGG | - | chr2_1:50836461-50836480 | None:intergenic | 40.0% | |
| TACTTGGAACAATCAGCATC+TGG | - | chr2_1:50836462-50836481 | None:intergenic | 40.0% | |
| TGGCTACACCCTATTCATTA+TGG | - | chr2_1:50836535-50836554 | None:intergenic | 40.0% | |
| GTTAATTGAGGCTTCGAAGT+GGG | + | chr2_1:50836883-50836902 | Msa0210610:exon | 40.0% | |
| CTGACCAAATAGCTCACACA+AGG | - | chr2_1:50836249-50836268 | None:intergenic | 45.0% | |
| TGTGTGAGCTATTTGGTCAG+TGG | + | chr2_1:50836249-50836268 | Msa0210610:CDS | 45.0% | |
| AGCTATTTGGTCAGTGGAAG+TGG | + | chr2_1:50836255-50836274 | Msa0210610:CDS | 45.0% | |
| CTTGGAACAATCAGCATCTG+GGG | - | chr2_1:50836460-50836479 | None:intergenic | 45.0% | |
| !! | TGTAGCGATTTTGATACCCG+AGG | - | chr2_1:50836558-50836577 | None:intergenic | 45.0% |
| TTTGTTGCTGCGTCTATTGC+AGG | + | chr2_1:50836856-50836875 | Msa0210610:intron | 45.0% | |
| GGTTAATTGAGGCTTCGAAG+TGG | + | chr2_1:50836882-50836901 | Msa0210610:exon | 45.0% | |
| CTGACCAAATAGCTCACACA+AGG | - | chr2_1:50836249-50836268 | None:intergenic | 45.0% | |
| TGTGTGAGCTATTTGGTCAG+TGG | + | chr2_1:50836249-50836268 | Msa0210610:CDS | 45.0% | |
| AGCTATTTGGTCAGTGGAAG+TGG | + | chr2_1:50836255-50836274 | Msa0210610:CDS | 45.0% | |
| CTTGGAACAATCAGCATCTG+GGG | - | chr2_1:50836460-50836479 | None:intergenic | 45.0% | |
| !! | TGTAGCGATTTTGATACCCG+AGG | - | chr2_1:50836558-50836577 | None:intergenic | 45.0% |
| TTTGTTGCTGCGTCTATTGC+AGG | + | chr2_1:50836856-50836875 | Msa0210610:intron | 45.0% | |
| GGTTAATTGAGGCTTCGAAG+TGG | + | chr2_1:50836882-50836901 | Msa0210610:exon | 45.0% | |
| ! | AATTGGCTCAGGCTCTTGCA+GGG | + | chr2_1:50836403-50836422 | Msa0210610:CDS | 50.0% |
| ATCTGGGGAGATACTGATGG+GGG | - | chr2_1:50836445-50836464 | None:intergenic | 50.0% | |
| CATCTGGGGAGATACTGATG+GGG | - | chr2_1:50836446-50836465 | None:intergenic | 50.0% | |
| GCATCTGGGGAGATACTGAT+GGG | - | chr2_1:50836447-50836466 | None:intergenic | 50.0% | |
| AGCATCTGGGGAGATACTGA+TGG | - | chr2_1:50836448-50836467 | None:intergenic | 50.0% | |
| TGAATAGGGTGTAGCCACCT+CGG | + | chr2_1:50836538-50836557 | Msa0210610:intron | 50.0% | |
| !! | AGCGATTTTGATACCCGAGG+TGG | - | chr2_1:50836555-50836574 | None:intergenic | 50.0% |
| TGCTGCGTCTATTGCAGGAT+TGG | + | chr2_1:50836861-50836880 | Msa0210610:intron | 50.0% | |
| TGAGGCTTCGAAGTGGGAAT+TGG | + | chr2_1:50836889-50836908 | Msa0210610:three_prime_UTR | 50.0% | |
| GCTTCGAAGTGGGAATTGGA+GGG | + | chr2_1:50836893-50836912 | Msa0210610:three_prime_UTR | 50.0% | |
| ! | AATTGGCTCAGGCTCTTGCA+GGG | + | chr2_1:50836403-50836422 | Msa0210610:CDS | 50.0% |
| ATCTGGGGAGATACTGATGG+GGG | - | chr2_1:50836445-50836464 | None:intergenic | 50.0% | |
| CATCTGGGGAGATACTGATG+GGG | - | chr2_1:50836446-50836465 | None:intergenic | 50.0% | |
| GCATCTGGGGAGATACTGAT+GGG | - | chr2_1:50836447-50836466 | None:intergenic | 50.0% | |
| AGCATCTGGGGAGATACTGA+TGG | - | chr2_1:50836448-50836467 | None:intergenic | 50.0% | |
| TGAATAGGGTGTAGCCACCT+CGG | + | chr2_1:50836538-50836557 | Msa0210610:intron | 50.0% | |
| !! | AGCGATTTTGATACCCGAGG+TGG | - | chr2_1:50836555-50836574 | None:intergenic | 50.0% |
| TGCTGCGTCTATTGCAGGAT+TGG | + | chr2_1:50836861-50836880 | Msa0210610:intron | 50.0% | |
| TGAGGCTTCGAAGTGGGAAT+TGG | + | chr2_1:50836889-50836908 | Msa0210610:three_prime_UTR | 50.0% | |
| GCTTCGAAGTGGGAATTGGA+GGG | + | chr2_1:50836893-50836912 | Msa0210610:three_prime_UTR | 50.0% | |
| ! | CAATTGGCTCAGGCTCTTGC+AGG | + | chr2_1:50836402-50836421 | Msa0210610:CDS | 55.0% |
| GAATAGGGTGTAGCCACCTC+GGG | + | chr2_1:50836539-50836558 | Msa0210610:intron | 55.0% | |
| GGCTTCGAAGTGGGAATTGG+AGG | + | chr2_1:50836892-50836911 | Msa0210610:three_prime_UTR | 55.0% | |
| ! | CAATTGGCTCAGGCTCTTGC+AGG | + | chr2_1:50836402-50836421 | Msa0210610:CDS | 55.0% |
| GAATAGGGTGTAGCCACCTC+GGG | + | chr2_1:50836539-50836558 | Msa0210610:intron | 55.0% | |
| GGCTTCGAAGTGGGAATTGG+AGG | + | chr2_1:50836892-50836911 | Msa0210610:three_prime_UTR | 55.0% | |
| CCAGAGCAACATGCAGCTGG+TGG | - | chr2_1:50836285-50836304 | None:intergenic | 60.0% | |
| CCACCAGCTGCATGTTGCTC+TGG | + | chr2_1:50836282-50836301 | Msa0210610:CDS | 60.0% | |
| GCTCCAGAGCAACATGCAGC+TGG | - | chr2_1:50836288-50836307 | None:intergenic | 60.0% | |
| CAGGCTCTTGCAGGGAACTG+TGG | + | chr2_1:50836411-50836430 | Msa0210610:CDS | 60.0% | |
| CCAGAGCAACATGCAGCTGG+TGG | - | chr2_1:50836285-50836304 | None:intergenic | 60.0% | |
| CCACCAGCTGCATGTTGCTC+TGG | + | chr2_1:50836282-50836301 | Msa0210610:CDS | 60.0% | |
| GCTCCAGAGCAACATGCAGC+TGG | - | chr2_1:50836288-50836307 | None:intergenic | 60.0% | |
| CAGGCTCTTGCAGGGAACTG+TGG | + | chr2_1:50836411-50836430 | Msa0210610:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 50836141 | 50836933 | 50836141 | ID=Msa0210610;Name=Msa0210610 |
| chr2_1 | mRNA | 50836141 | 50836933 | 50836141 | ID=Msa0210610-mRNA-1;Parent=Msa0210610;Name=Msa0210610-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.33|1|0|0|3|46|112 |
| chr2_1 | exon | 50836141 | 50836227 | 50836141 | ID=Msa0210610-mRNA-1:exon:14097;Parent=Msa0210610-mRNA-1 |
| chr2_1 | exon | 50836237 | 50836478 | 50836237 | ID=Msa0210610-mRNA-1:exon:14098;Parent=Msa0210610-mRNA-1 |
| chr2_1 | exon | 50836878 | 50836933 | 50836878 | ID=Msa0210610-mRNA-1:exon:14099;Parent=Msa0210610-mRNA-1 |
| chr2_1 | CDS | 50836141 | 50836227 | 50836141 | ID=Msa0210610-mRNA-1:cds;Parent=Msa0210610-mRNA-1 |
| chr2_1 | CDS | 50836237 | 50836478 | 50836237 | ID=Msa0210610-mRNA-1:cds;Parent=Msa0210610-mRNA-1 |
| chr2_1 | CDS | 50836878 | 50836887 | 50836878 | ID=Msa0210610-mRNA-1:cds;Parent=Msa0210610-mRNA-1 |
| chr2_1 | three_prime_UTR | 50836888 | 50836933 | 50836888 | ID=Msa0210610-mRNA-1:three_prime_utr;Parent=Msa0210610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
