Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257010 | XP_003596543.1 | 100.000 | 195 | 0 | 0 | 41 | 235 | 9 | 203 | 2.74e-138 | 396 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257010 | sp|Q9LSQ5|FQR1_ARATH | 90.625 | 192 | 18 | 0 | 41 | 232 | 9 | 200 | 2.73e-129 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257010 | G7ITL8 | 100.000 | 195 | 0 | 0 | 41 | 235 | 9 | 203 | 1.31e-138 | 396 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026910 | Msa0257010 | 0.802484 | 5.487908e-49 | -8.615850e-47 |
| Msa0137570 | Msa0257010 | 0.805115 | 1.559589e-49 | -8.615850e-47 |
| Msa0182570 | Msa0257010 | 0.814087 | 1.842205e-51 | -8.615850e-47 |
| Msa0217180 | Msa0257010 | 0.833090 | 6.509562e-56 | -8.615850e-47 |
| Msa0257010 | Msa1026640 | 0.805923 | 1.056030e-49 | -8.615850e-47 |
| Msa0257010 | Msa1182690 | 0.800741 | 1.250222e-48 | -8.615850e-47 |
| Msa0257010 | Msa1348850 | 0.805623 | 1.220561e-49 | -8.615850e-47 |
| Msa0257010 | Msa1393740 | 0.801331 | 9.471110e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257010 | MtrunA17_Chr2g0318961 | 100.000 | 195 | 0 | 0 | 41 | 235 | 9 | 203 | 2.52e-142 | 396 |
| Msa0257010 | MtrunA17_Chr8g0361451 | 90.256 | 195 | 19 | 0 | 41 | 235 | 9 | 203 | 4.27e-130 | 365 |
| Msa0257010 | MtrunA17_Chr4g0048841 | 84.021 | 194 | 31 | 0 | 39 | 232 | 42 | 235 | 3.18e-119 | 339 |
| Msa0257010 | MtrunA17_Chr2g0280641 | 74.479 | 192 | 49 | 0 | 41 | 232 | 9 | 200 | 3.07e-104 | 300 |
| Msa0257010 | MtrunA17_Chr5g0429671 | 69.430 | 193 | 58 | 1 | 41 | 232 | 10 | 202 | 2.95e-99 | 287 |
| Msa0257010 | MtrunA17_Chr4g0034601 | 68.229 | 192 | 60 | 1 | 41 | 231 | 57 | 248 | 1.03e-90 | 267 |
| Msa0257010 | MtrunA17_Chr5g0403681 | 64.615 | 195 | 68 | 1 | 41 | 234 | 58 | 252 | 1.32e-88 | 262 |
| Msa0257010 | MtrunA17_Chr8g0361461 | 86.667 | 120 | 16 | 0 | 116 | 235 | 1 | 120 | 1.95e-71 | 214 |
| Msa0257010 | MtrunA17_Chr4g0048831 | 82.051 | 117 | 17 | 1 | 116 | 232 | 1 | 113 | 2.80e-64 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257010 | AT5G54500.1 | 90.625 | 192 | 18 | 0 | 41 | 232 | 9 | 200 | 2.77e-130 | 366 |
| Msa0257010 | AT4G27270.1 | 89.062 | 192 | 21 | 0 | 41 | 232 | 9 | 200 | 4.03e-128 | 360 |
| Msa0257010 | AT4G27270.3 | 88.889 | 189 | 21 | 0 | 44 | 232 | 1 | 189 | 2.37e-125 | 353 |
| Msa0257010 | AT4G27270.2 | 88.889 | 189 | 21 | 0 | 44 | 232 | 1 | 189 | 2.37e-125 | 353 |
| Msa0257010 | AT5G54500.2 | 90.260 | 154 | 15 | 0 | 41 | 194 | 9 | 162 | 1.95e-101 | 295 |
| Msa0257010 | AT4G27270.4 | 88.816 | 152 | 17 | 0 | 84 | 235 | 1 | 152 | 3.24e-98 | 283 |
| Msa0257010 | AT4G36750.1 | 68.557 | 194 | 60 | 1 | 41 | 233 | 79 | 272 | 4.53e-94 | 277 |
| Msa0257010 | AT5G58800.1 | 64.948 | 194 | 67 | 1 | 41 | 233 | 10 | 203 | 1.15e-91 | 268 |
| Msa0257010 | AT5G58800.2 | 64.948 | 194 | 67 | 1 | 41 | 233 | 10 | 203 | 1.15e-91 | 268 |
Find 81 sgRNAs with CRISPR-Local
Find 380 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGCAATGGCGAGCTCAAC+GGG | 0.238866 | 2_2:+52535343 | None:intergenic |
| TGCAATCTTTATTGTACATT+AGG | 0.261191 | 2_2:-52541935 | None:intergenic |
| TTTGGCTTCCCAACAAGATT+TGG | 0.281962 | 2_2:+52540825 | Msa0257010:CDS |
| GCAATCTTTATTGTACATTA+GGG | 0.285334 | 2_2:-52541934 | None:intergenic |
| TTGTATTGTTTGTTCTTGTT+AGG | 0.337549 | 2_2:+52541789 | Msa0257010:three_prime_UTR |
| AATACTTGCCTGCCATAGTT+TGG | 0.355319 | 2_2:-52539968 | None:intergenic |
| GCTTTGTATGTGTGTTATAT+AGG | 0.358776 | 2_2:+52541724 | Msa0257010:three_prime_UTR |
| TGCATTGTATCAACCAAGTT+TGG | 0.365269 | 2_2:+52541890 | Msa0257010:three_prime_UTR |
| TGGCAAGATATTTCCCTTGA+TGG | 0.369825 | 2_2:-52541515 | None:intergenic |
| TGGAAAGCACAATCGCTTGC+AGG | 0.372580 | 2_2:+52540897 | Msa0257010:CDS |
| TGTACATTAGGGAATAATAA+AGG | 0.372839 | 2_2:-52541923 | None:intergenic |
| TTGTCCGCCGCCTTGAGAAC+CGG | 0.384299 | 2_2:-52540946 | None:intergenic |
| ATTGTTTGTTCTTGTTAGGC+TGG | 0.390176 | 2_2:+52541793 | Msa0257010:three_prime_UTR |
| TGCTGCAATTCAAGCTCACT+TGG | 0.403953 | 2_2:-52541486 | None:intergenic |
| TTCCTTGAGCTTCTTTGTGA+TGG | 0.410437 | 2_2:-52541538 | None:intergenic |
| GTTCCAATCGGTTATACATT+CGG | 0.413022 | 2_2:+52541381 | Msa0257010:CDS |
| ACCGGTGCTGTAGAAGATTC+CGG | 0.421664 | 2_2:-52540928 | None:intergenic |
| GACAGGTACTACTCCATGTA+TGG | 0.423761 | 2_2:+52539883 | Msa0257010:intron |
| ACCTCCTCTTGCAGAGTCTC+AGG | 0.429211 | 2_2:-52540720 | None:intergenic |
| ATAGATGTAATACAAAATAT+AGG | 0.436938 | 2_2:-52541830 | None:intergenic |
| TCACCCTCAGACAGTTCATT+TGG | 0.438735 | 2_2:-52540792 | None:intergenic |
| GCTGCGAGCGATGACAGAAC+AGG | 0.441239 | 2_2:+52535445 | Msa0257010:CDS |
| GCCATCATTCCAAATCTTGT+TGG | 0.445283 | 2_2:-52540834 | None:intergenic |
| CCATCATTCCAAATCTTGTT+GGG | 0.448149 | 2_2:-52540833 | None:intergenic |
| CCCAACAAGATTTGGAATGA+TGG | 0.449236 | 2_2:+52540833 | Msa0257010:CDS |
| TGCTCGCAGTTGCGAGCTAA+GGG | 0.449779 | 2_2:+52535390 | Msa0257010:CDS |
| CTTGAGCTTCTTTGTGATGG+TGG | 0.452174 | 2_2:-52541535 | None:intergenic |
| GCGTATGTTCCTGCACCATA+TGG | 0.462132 | 2_2:-52541444 | None:intergenic |
| TAGATGCTACTGGTGGTTTG+TGG | 0.475106 | 2_2:+52540877 | Msa0257010:CDS |
| TTGCTCGCAGTTGCGAGCTA+AGG | 0.476864 | 2_2:+52535389 | Msa0257010:CDS |
| GGAATGATATTTGTTCCAAT+CGG | 0.481412 | 2_2:+52541369 | Msa0257010:CDS |
| GTGAAAGGTGGAAGTCCATA+TGG | 0.494510 | 2_2:+52541429 | Msa0257010:CDS |
| AGGCAATGCTCTACCAAACT+TGG | 0.495046 | 2_2:-52541903 | None:intergenic |
| TCGCTTGCAGGCAAGCCTGC+CGG | 0.497043 | 2_2:+52540909 | Msa0257010:CDS |
| CGTTGAAGCCAAACTATGGC+AGG | 0.498411 | 2_2:+52539960 | Msa0257010:CDS |
| CGAGCTAAGGGGTTACTCAC+AGG | 0.499652 | 2_2:+52535402 | Msa0257010:CDS |
| AAGGCGTTGAAGCCAAACTA+TGG | 0.501664 | 2_2:+52539956 | Msa0257010:CDS |
| CGGAGCCGGCATGTTTGAGA+TGG | 0.507130 | 2_2:+52541401 | Msa0257010:CDS |
| AAAGAAAGGTGCTGCTTCTG+TGG | 0.513238 | 2_2:+52539933 | Msa0257010:CDS |
| AATGAGTGGTACATCACTCT+TGG | 0.514522 | 2_2:-52540766 | None:intergenic |
| TTCTACAGCACCGGTTCTCA+AGG | 0.516974 | 2_2:+52540936 | Msa0257010:CDS |
| TTTCTCCACATGTCCATACA+TGG | 0.519645 | 2_2:-52539896 | None:intergenic |
| TTGTTTGTTCTTGTTAGGCT+GGG | 0.524234 | 2_2:+52541794 | Msa0257010:three_prime_UTR |
| GCTTACTGCTATTACTCAGC+TGG | 0.527936 | 2_2:+52541338 | Msa0257010:CDS |
| GCCGGAATCTTCTACAGCAC+CGG | 0.537447 | 2_2:+52540927 | Msa0257010:CDS |
| AAAGGTGCTGCTTCTGTGGA+AGG | 0.539491 | 2_2:+52539937 | Msa0257010:CDS |
| GAGATGGAGCAAGTGAAAGG+TGG | 0.540398 | 2_2:+52541417 | Msa0257010:CDS |
| ATTACTCAGCTGGTTCATCA+TGG | 0.541080 | 2_2:+52541348 | Msa0257010:CDS |
| AATGTACAATAAAGATTGCA+TGG | 0.544710 | 2_2:+52541938 | Msa0257010:three_prime_UTR |
| GCAGGAACATACGCCGGCGA+TGG | 0.545827 | 2_2:+52541453 | Msa0257010:CDS |
| TGCAGCAAGCATTCCATCAA+GGG | 0.547652 | 2_2:+52541502 | Msa0257010:CDS |
| TTGCAGCAAGCATTCCATCA+AGG | 0.547761 | 2_2:+52541501 | Msa0257010:CDS |
| ATCGGTTATACATTCGGAGC+CGG | 0.548677 | 2_2:+52541387 | Msa0257010:CDS |
| GGTGGAAGTCCATATGGTGC+AGG | 0.555416 | 2_2:+52541435 | Msa0257010:CDS |
| ATGAGTGGTACATCACTCTT+GGG | 0.565086 | 2_2:-52540765 | None:intergenic |
| CTAGCAGAAGAAATAAAGAA+AGG | 0.566913 | 2_2:+52539919 | Msa0257010:CDS |
| ACTCGCAATGGCGAGCTCAA+CGG | 0.573879 | 2_2:+52535342 | None:intergenic |
| GCTCCGAATGTATAACCGAT+TGG | 0.573893 | 2_2:-52541384 | None:intergenic |
| TACACCAAATGAACTGTCTG+AGG | 0.584673 | 2_2:+52540788 | Msa0257010:CDS |
| TAGCTCGCAACTGCGAGCAA+TGG | 0.610236 | 2_2:-52535386 | None:intergenic |
| AGTTCATTTGGTGTAATGAG+TGG | 0.610687 | 2_2:-52540780 | None:intergenic |
| CTACTCCATGTATGGACATG+TGG | 0.614664 | 2_2:+52539891 | Msa0257010:CDS |
| ACCTGAGACTCTGCAAGAGG+AGG | 0.617531 | 2_2:+52540719 | Msa0257010:CDS |
| GTGCTGTAGAAGATTCCGGC+AGG | 0.623342 | 2_2:-52540924 | None:intergenic |
| CACCATCACAAAGAAGCTCA+AGG | 0.623802 | 2_2:+52541536 | Msa0257010:CDS |
| ACTCTGCAAGAGGAGGTGCT+TGG | 0.623982 | 2_2:+52540726 | Msa0257010:CDS |
| GTGTGTTATATAGGATGCAG+TGG | 0.625654 | 2_2:+52541733 | Msa0257010:three_prime_UTR |
| CTGCGAGCGATGACAGAACA+GGG | 0.632456 | 2_2:+52535446 | Msa0257010:CDS |
| AGCACCGGTTCTCAAGGCGG+CGG | 0.639495 | 2_2:+52540942 | Msa0257010:CDS |
| GGTTACTCACAGGTGCGAGT+AGG | 0.642804 | 2_2:+52535412 | Msa0257010:CDS |
| GGTACCTGAGACTCTGCAAG+AGG | 0.643789 | 2_2:+52540716 | Msa0257010:intron |
| TTGCTCCATCTCAAACATGC+CGG | 0.649670 | 2_2:-52541406 | None:intergenic |
| AATGAACTGTCTGAGGGTGA+TGG | 0.650302 | 2_2:+52540795 | Msa0257010:CDS |
| TGGCTGTCTTGAACCATCGC+CGG | 0.656734 | 2_2:-52541466 | None:intergenic |
| TTTGAGATGGAGCAAGTGAA+AGG | 0.659849 | 2_2:+52541414 | Msa0257010:CDS |
| ACACCAAATGAACTGTCTGA+GGG | 0.665595 | 2_2:+52540789 | Msa0257010:CDS |
| TACAGCACCGGTTCTCAAGG+CGG | 0.675217 | 2_2:+52540939 | Msa0257010:CDS |
| GCTCGCAGTTGCGAGCTAAG+GGG | 0.693405 | 2_2:+52535391 | Msa0257010:CDS |
| TATGGTGCAGGAACATACGC+CGG | 0.719829 | 2_2:+52541447 | Msa0257010:CDS |
| AGTGGTACATCACTCTTGGG+TGG | 0.722965 | 2_2:-52540762 | None:intergenic |
| TCGCAATGGCGAGCTCAACG+GGG | 0.766705 | 2_2:+52535344 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATATATATTTATAA+TGG | - | chr2_2:52535977-52535996 | None:intergenic | 0.0% |
| !! | TAGAAATAATTAATTATTAG+GGG | - | chr2_2:52535895-52535914 | None:intergenic | 10.0% |
| !! | GTAGAAATAATTAATTATTA+GGG | - | chr2_2:52535896-52535915 | None:intergenic | 10.0% |
| !! | AGTAGAAATAATTAATTATT+AGG | - | chr2_2:52535897-52535916 | None:intergenic | 10.0% |
| !! | ATTAATATTTAAGTGATTTA+TGG | - | chr2_2:52536023-52536042 | None:intergenic | 10.0% |
| !! | AAATATTAATTAAGAAAAAG+TGG | + | chr2_2:52536033-52536052 | Msa0257010:intron | 10.0% |
| !! | AATATTAATTAAGAAAAAGT+GGG | + | chr2_2:52536034-52536053 | Msa0257010:intron | 10.0% |
| !!! | TTAATATTCTTATTTATTTG+AGG | + | chr2_2:52536123-52536142 | Msa0257010:intron | 10.0% |
| !!! | CATGAATTTTTTTTTTTTTA+GGG | - | chr2_2:52536426-52536445 | None:intergenic | 10.0% |
| !!! | ACATGAATTTTTTTTTTTTT+AGG | - | chr2_2:52536427-52536446 | None:intergenic | 10.0% |
| !!! | TATTTTTTTAACAATTACTT+CGG | + | chr2_2:52536972-52536991 | Msa0257010:intron | 10.0% |
| !! | AAATTAATATCATTCATTAA+TGG | - | chr2_2:52537269-52537288 | None:intergenic | 10.0% |
| !!! | TTTTGTCTTATAAAATTTTT+GGG | - | chr2_2:52537542-52537561 | None:intergenic | 10.0% |
| !!! | TTTTTGTCTTATAAAATTTT+TGG | - | chr2_2:52537543-52537562 | None:intergenic | 10.0% |
| !!! | ATAAAATAACTTTACATTTT+TGG | - | chr2_2:52537691-52537710 | None:intergenic | 10.0% |
| !!! | CTCATTTTTAATTAAATTTT+GGG | - | chr2_2:52537733-52537752 | None:intergenic | 10.0% |
| !!! | ACTCATTTTTAATTAAATTT+TGG | - | chr2_2:52537734-52537753 | None:intergenic | 10.0% |
| !!! | TTTGATTTTTATATTTGATT+TGG | + | chr2_2:52538969-52538988 | Msa0257010:intron | 10.0% |
| !!! | AATATTAATATTTGTTATCT+TGG | - | chr2_2:52541293-52541312 | None:intergenic | 10.0% |
| !!! | ATATAAGTATTTTCTTAAGT+GGG | - | chr2_2:52535937-52535956 | None:intergenic | 15.0% |
| !!! | AATATAAGTATTTTCTTAAG+TGG | - | chr2_2:52535938-52535957 | None:intergenic | 15.0% |
| !!! | TTAACAATTTTTTTTCTGAA+AGG | + | chr2_2:52536349-52536368 | Msa0257010:intron | 15.0% |
| !!! | TAACAATTTTTTTTCTGAAA+GGG | + | chr2_2:52536350-52536369 | Msa0257010:intron | 15.0% |
| !!! | AATTTTTTTTTTTTTAGGGA+AGG | - | chr2_2:52536422-52536441 | None:intergenic | 15.0% |
| !!! | TTAACAATTTTTTTTCTGAA+AGG | + | chr2_2:52536349-52536368 | Msa0257010:intron | 15.0% |
| !!! | TAACAATTTTTTTTCTGAAA+GGG | + | chr2_2:52536350-52536369 | Msa0257010:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTAGGGA+AGG | - | chr2_2:52536579-52536598 | None:intergenic | 15.0% |
| !! | AAAAAACAATTAAAATGAGA+CGG | - | chr2_2:52536892-52536911 | None:intergenic | 15.0% |
| !!! | ATCAATTGTTTCTTATAATA+AGG | - | chr2_2:52537126-52537145 | None:intergenic | 15.0% |
| !!! | TAAGAAACAATTGATATTTT+AGG | + | chr2_2:52537131-52537150 | Msa0257010:intron | 15.0% |
| !!! | TTTGTCTTATAAAATTTTTG+GGG | - | chr2_2:52537541-52537560 | None:intergenic | 15.0% |
| !!! | TTTACTTTTTTGGTATATTT+AGG | - | chr2_2:52537652-52537671 | None:intergenic | 15.0% |
| !!! | TTTTTAATTAAATTTTGGGA+TGG | - | chr2_2:52537729-52537748 | None:intergenic | 15.0% |
| !! | AAAATAAAAAAAATTACACG+TGG | - | chr2_2:52537974-52537993 | None:intergenic | 15.0% |
| !!! | TTTTTTTATTTTTTTTGCCT+TGG | + | chr2_2:52537982-52538001 | Msa0257010:intron | 15.0% |
| !!! | TTTTTTATTTTTTTTGCCTT+GGG | + | chr2_2:52537983-52538002 | Msa0257010:intron | 15.0% |
| !! | TAATAATGATTCTAAATTAG+TGG | - | chr2_2:52538277-52538296 | None:intergenic | 15.0% |
| !!! | ATTTGACAGTTAAAAATTTT+GGG | - | chr2_2:52539326-52539345 | None:intergenic | 15.0% |
| !!! | TATTTGACAGTTAAAAATTT+TGG | - | chr2_2:52539327-52539346 | None:intergenic | 15.0% |
| !! | ATAAATTTACTTGAAACATT+TGG | - | chr2_2:52539630-52539649 | None:intergenic | 15.0% |
| !! | TATATATAATTGTGAAATGA+AGG | + | chr2_2:52540523-52540542 | Msa0257010:intron | 15.0% |
| !! | ATAAAAACACAAGAATTATT+CGG | - | chr2_2:52540570-52540589 | None:intergenic | 15.0% |
| !! | ATAGATGTAATACAAAATAT+AGG | - | chr2_2:52541833-52541852 | None:intergenic | 15.0% |
| !!! | ATTAACAAGTTTTGATTCAT+AGG | - | chr2_2:52535678-52535697 | None:intergenic | 20.0% |
| !! | AGAAACATAATATAAGGTAA+GGG | - | chr2_2:52535718-52535737 | None:intergenic | 20.0% |
| !! | GATTTCAGAAACATAATATA+AGG | - | chr2_2:52535724-52535743 | None:intergenic | 20.0% |
| !! | AAGAATAAAAGTCTGTAATT+GGG | - | chr2_2:52535837-52535856 | None:intergenic | 20.0% |
| !! | AAAGAATAAAAGTCTGTAAT+TGG | - | chr2_2:52535838-52535857 | None:intergenic | 20.0% |
| !!! | TATAAGTATTTTCTTAAGTG+GGG | - | chr2_2:52535936-52535955 | None:intergenic | 20.0% |
| !!! | TAATGTTGATTTTTTTCAAG+AGG | - | chr2_2:52536317-52536336 | None:intergenic | 20.0% |
| !!! | TAACAATCTTCATTTTTTTG+AGG | + | chr2_2:52536377-52536396 | Msa0257010:intron | 20.0% |
| !!! | AACAATCTTCATTTTTTTGA+GGG | + | chr2_2:52536378-52536397 | Msa0257010:intron | 20.0% |
| !! | AAAATTCATGTTAACCTATA+TGG | + | chr2_2:52536436-52536455 | Msa0257010:intron | 20.0% |
| !!! | TAATGTTGATTTTTTTCAAG+AGG | - | chr2_2:52536317-52536336 | None:intergenic | 20.0% |
| !!! | TAACAATCTTCATTTTTTTG+AGG | + | chr2_2:52536377-52536396 | Msa0257010:intron | 20.0% |
| !!! | AACAATCTTCATTTTTTTGA+GGG | + | chr2_2:52536378-52536397 | Msa0257010:intron | 20.0% |
| !! | AAATTTCATGTTAACCTATA+TGG | + | chr2_2:52536596-52536615 | Msa0257010:intron | 20.0% |
| !! | ATTAAATATATCCTAAGCTA+AGG | - | chr2_2:52536639-52536658 | None:intergenic | 20.0% |
| !!! | TGAGAAATAATTGACTTTTT+AGG | - | chr2_2:52537071-52537090 | None:intergenic | 20.0% |
| !!! | CTATTTTAAACTTCTTAACT+TGG | + | chr2_2:52537218-52537237 | Msa0257010:intron | 20.0% |
| !!! | TTGTCTTATAAAATTTTTGG+GGG | - | chr2_2:52537540-52537559 | None:intergenic | 20.0% |
| !!! | TTTTGCAGTTTTTTTTCTTA+GGG | - | chr2_2:52537863-52537882 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTTTTTGCCTTG+GGG | + | chr2_2:52537984-52538003 | Msa0257010:intron | 20.0% |
| !! | TATATACGTGTTTATGATTA+TGG | - | chr2_2:52538319-52538338 | None:intergenic | 20.0% |
| !! | CAAAGTTTATGATAGAAAAA+TGG | - | chr2_2:52538383-52538402 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTTTTTGTACTG+TGG | + | chr2_2:52538603-52538622 | Msa0257010:intron | 20.0% |
| !!! | AAGATTAGATTTTGTTTACT+GGG | + | chr2_2:52538645-52538664 | Msa0257010:intron | 20.0% |
| !!! | GTTTTGTTTAATTCTCAAAT+GGG | + | chr2_2:52538667-52538686 | Msa0257010:intron | 20.0% |
| !!! | TATTAAATCTCAAACCTTTT+TGG | + | chr2_2:52538691-52538710 | Msa0257010:intron | 20.0% |
| !!! | TTTTTCTATAGAAAGAGTAT+TGG | + | chr2_2:52538755-52538774 | Msa0257010:intron | 20.0% |
| !!! | AAAAGGTTCTATTTTTTCAT+TGG | + | chr2_2:52538800-52538819 | Msa0257010:intron | 20.0% |
| !! | CAAATAAAAGGAAACAAATT+TGG | - | chr2_2:52538953-52538972 | None:intergenic | 20.0% |
| !!! | AGTTTCAAGTGTATATTTTT+TGG | + | chr2_2:52539470-52539489 | Msa0257010:intron | 20.0% |
| !!! | ATCGTTTTTCAAAATAAGTA+TGG | + | chr2_2:52539648-52539667 | Msa0257010:intron | 20.0% |
| !! | TCCAATTACACAATTATTTA+AGG | + | chr2_2:52540125-52540144 | Msa0257010:intron | 20.0% |
| !! | ACCTTAAATAATTGTGTAAT+TGG | - | chr2_2:52540129-52540148 | None:intergenic | 20.0% |
| !! | TAAATACTTGTGAAATTGTT+TGG | - | chr2_2:52540431-52540450 | None:intergenic | 20.0% |
| !!! | TTATTTGATTTTGTAAGTGA+AGG | + | chr2_2:52540629-52540648 | Msa0257010:intron | 20.0% |
| !!! | ACTATTTTCATAAGTATTCT+TGG | + | chr2_2:52541134-52541153 | Msa0257010:intron | 20.0% |
| !!! | AATATTTGTTATCTTGGTAA+TGG | - | chr2_2:52541287-52541306 | None:intergenic | 20.0% |
| !! | TAAAAAATGGTAAATGGTAA+GGG | - | chr2_2:52541634-52541653 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTGTAAATTGGA+AGG | - | chr2_2:52541703-52541722 | None:intergenic | 20.0% |
| !!! | AGCATTTTCTTTTTGTAAAT+TGG | - | chr2_2:52541707-52541726 | None:intergenic | 20.0% |
| !!! | CTTCCAATTTTAATGACTTT+TGG | + | chr2_2:52535611-52535630 | Msa0257010:intron | 25.0% |
| ! | CAGAAACATAATATAAGGTA+AGG | - | chr2_2:52535719-52535738 | None:intergenic | 25.0% |
| !! | ATAAGTATTTTCTTAAGTGG+GGG | - | chr2_2:52535935-52535954 | None:intergenic | 25.0% |
| ! | AGAACATGATTAATGATGAT+AGG | - | chr2_2:52536781-52536800 | None:intergenic | 25.0% |
| ! | ATTAATCATGTTCTTTGCAA+CGG | + | chr2_2:52536787-52536806 | Msa0257010:intron | 25.0% |
| !! | GTCAATTATTTCTCATGATA+AGG | + | chr2_2:52537076-52537095 | Msa0257010:intron | 25.0% |
| !!! | TAATTAAATTTTGGGATGGA+GGG | - | chr2_2:52537725-52537744 | None:intergenic | 25.0% |
| !!! | TTAATTAAATTTTGGGATGG+AGG | - | chr2_2:52537726-52537745 | None:intergenic | 25.0% |
| !!! | TTTGCAGTTTTTTTTCTTAG+GGG | - | chr2_2:52537862-52537881 | None:intergenic | 25.0% |
| !!! | GTTTTGCAGTTTTTTTTCTT+AGG | - | chr2_2:52537864-52537883 | None:intergenic | 25.0% |
| !!! | TTTTATTTTTTTTGCCTTGG+GGG | + | chr2_2:52537985-52538004 | Msa0257010:intron | 25.0% |
| !!! | AGTTTTGTAGTTTTTTCCTT+AGG | + | chr2_2:52538042-52538061 | Msa0257010:intron | 25.0% |
| !!! | GTTTTGTAGTTTTTTCCTTA+GGG | + | chr2_2:52538043-52538062 | Msa0257010:intron | 25.0% |
| !!! | TTTTGTAGTTTTTTCCTTAG+GGG | + | chr2_2:52538044-52538063 | Msa0257010:intron | 25.0% |
| !! | GCAACTTTGGAAAAATTAAA+GGG | + | chr2_2:52538076-52538095 | Msa0257010:intron | 25.0% |
| ! | TTATGATAGAAAAATGGTGA+GGG | - | chr2_2:52538377-52538396 | None:intergenic | 25.0% |
| ! | TTTATGATAGAAAAATGGTG+AGG | - | chr2_2:52538378-52538397 | None:intergenic | 25.0% |
| ! | AAAAAAACAGCAATAACAAC+AGG | - | chr2_2:52538586-52538605 | None:intergenic | 25.0% |
| !!! | CAAGATTAGATTTTGTTTAC+TGG | + | chr2_2:52538644-52538663 | Msa0257010:intron | 25.0% |
| !!! | GGTTTTGTTTAATTCTCAAA+TGG | + | chr2_2:52538666-52538685 | Msa0257010:intron | 25.0% |
| !! | AACCTTTTTGGATTTTTCTT+TGG | + | chr2_2:52538703-52538722 | Msa0257010:intron | 25.0% |
| !!! | ATTGGTTTTCTTTGATCTTT+TGG | + | chr2_2:52538773-52538792 | Msa0257010:intron | 25.0% |
| !! | TTTGATCTTTTGGTAGAAAA+AGG | + | chr2_2:52538783-52538802 | Msa0257010:intron | 25.0% |
| ! | AACTGTGAAATTCTTCTATT+TGG | + | chr2_2:52539417-52539436 | Msa0257010:intron | 25.0% |
| ! | CATATGGAAAAACATTTGTT+GGG | - | chr2_2:52539580-52539599 | None:intergenic | 25.0% |
| ! | AGTTAATGAGTAATACTACT+AGG | + | chr2_2:52539682-52539701 | Msa0257010:intron | 25.0% |
| !!! | ATTGCATTAGACCTTTTTTA+TGG | + | chr2_2:52539713-52539732 | Msa0257010:intron | 25.0% |
| !!! | CAACTTTGAAACCATAAAAA+AGG | - | chr2_2:52539727-52539746 | None:intergenic | 25.0% |
| !! | AATTATTTAAGGTCCATAGT+TGG | + | chr2_2:52540136-52540155 | Msa0257010:intron | 25.0% |
| ! | ATTAAGTTCAAAACCAACTA+TGG | - | chr2_2:52540152-52540171 | None:intergenic | 25.0% |
| ! | ATTAAGTTCTTTATCCAAAC+AGG | - | chr2_2:52540253-52540272 | None:intergenic | 25.0% |
| ! | TCTTAAAGCTAAAAGATAAC+AGG | - | chr2_2:52540499-52540518 | None:intergenic | 25.0% |
| ! | AAGAATTATTCGGATATCAT+AGG | - | chr2_2:52540560-52540579 | None:intergenic | 25.0% |
| ! | AGTCAAATTATGTTCGTATA+AGG | + | chr2_2:52541106-52541125 | Msa0257010:intron | 25.0% |
| !!! | AGGGTTTTAAAGCAATATTT+CGG | - | chr2_2:52541615-52541634 | None:intergenic | 25.0% |
| ! | CTAAAAAATGGTAAATGGTA+AGG | - | chr2_2:52541635-52541654 | None:intergenic | 25.0% |
| ! | GAAGTCTAAAAAATGGTAAA+TGG | - | chr2_2:52541640-52541659 | None:intergenic | 25.0% |
| ! | TATATGCGAAGTCTAAAAAA+TGG | - | chr2_2:52541647-52541666 | None:intergenic | 25.0% |
| ! | TTGTATTGTTTGTTCTTGTT+AGG | + | chr2_2:52541789-52541808 | Msa0257010:three_prime_UTR | 25.0% |
| ! | TGTACATTAGGGAATAATAA+AGG | - | chr2_2:52541926-52541945 | None:intergenic | 25.0% |
| ! | GCAATCTTTATTGTACATTA+GGG | - | chr2_2:52541937-52541956 | None:intergenic | 25.0% |
| ! | TGCAATCTTTATTGTACATT+AGG | - | chr2_2:52541938-52541957 | None:intergenic | 25.0% |
| ! | AATGTACAATAAAGATTGCA+TGG | + | chr2_2:52541938-52541957 | Msa0257010:three_prime_UTR | 25.0% |
| GGTCCAAAAGTCATTAAAAT+TGG | - | chr2_2:52535617-52535636 | None:intergenic | 30.0% | |
| GTCAATTGTTGTAGGTTTAA+GGG | - | chr2_2:52535650-52535669 | None:intergenic | 30.0% | |
| AGTCAATTGTTGTAGGTTTA+AGG | - | chr2_2:52535651-52535670 | None:intergenic | 30.0% | |
| AAGTTGTAAACCAACAAGAT+TGG | + | chr2_2:52536174-52536193 | Msa0257010:intron | 30.0% | |
| AGTTGTAAACCAACAAGATT+GGG | + | chr2_2:52536175-52536194 | Msa0257010:intron | 30.0% | |
| TTACTTATACCCAATCTTGT+TGG | - | chr2_2:52536187-52536206 | None:intergenic | 30.0% | |
| ! | TTGATTTTGTAGGTCCATAT+AGG | - | chr2_2:52536613-52536632 | None:intergenic | 30.0% |
| ATATGGACCTACAAAATCAA+AGG | + | chr2_2:52536613-52536632 | Msa0257010:intron | 30.0% | |
| ! | TAGAAAGCAGTCAAATTTTG+CGG | - | chr2_2:52536698-52536717 | None:intergenic | 30.0% |
| CATGATTAATGATGATAGGA+TGG | - | chr2_2:52536777-52536796 | None:intergenic | 30.0% | |
| ! | TTATTTCTCATGATAAGGAC+CGG | + | chr2_2:52537081-52537100 | Msa0257010:intron | 30.0% |
| ! | ATCAAATGAAGTACTTTCTC+CGG | - | chr2_2:52537103-52537122 | None:intergenic | 30.0% |
| ! | TCTTGATAATTTGTGTCCTT+AGG | - | chr2_2:52537245-52537264 | None:intergenic | 30.0% |
| AGAACATCTCTAATTGTTTC+TGG | + | chr2_2:52537374-52537393 | Msa0257010:intron | 30.0% | |
| !! | TCTCTAATTGTTTCTGGAAT+AGG | + | chr2_2:52537380-52537399 | Msa0257010:intron | 30.0% |
| !! | CTCTAATTGTTTCTGGAATA+GGG | + | chr2_2:52537381-52537400 | Msa0257010:intron | 30.0% |
| !!! | TTGCAGTTTTTTTTCTTAGG+GGG | - | chr2_2:52537861-52537880 | None:intergenic | 30.0% |
| !!! | TTTATTTTTTTTGCCTTGGG+GGG | + | chr2_2:52537986-52538005 | Msa0257010:intron | 30.0% |
| !!! | TTTGTAGTTTTTTCCTTAGG+GGG | + | chr2_2:52538045-52538064 | Msa0257010:intron | 30.0% |
| ! | TTTTTCCAAAGTTGCGATTT+TGG | - | chr2_2:52538071-52538090 | None:intergenic | 30.0% |
| ! | CGCAACTTTGGAAAAATTAA+AGG | + | chr2_2:52538075-52538094 | Msa0257010:intron | 30.0% |
| GACCAAAGAAAAATCCAAAA+AGG | - | chr2_2:52538708-52538727 | None:intergenic | 30.0% | |
| AATTGAAACCATCCTCTAAT+TGG | + | chr2_2:52538898-52538917 | Msa0257010:intron | 30.0% | |
| !!! | ATTTGGAAGTGTGTTTTTTG+TGG | - | chr2_2:52538936-52538955 | None:intergenic | 30.0% |
| GTACACAAAGAGTCTTTAAA+TGG | - | chr2_2:52539034-52539053 | None:intergenic | 30.0% | |
| TCTCACAAAGATCACATATT+TGG | + | chr2_2:52539076-52539095 | Msa0257010:intron | 30.0% | |
| CTCACAAAGATCACATATTT+GGG | + | chr2_2:52539077-52539096 | Msa0257010:intron | 30.0% | |
| ! | CATCAAGAAAGTGTGAATAT+TGG | + | chr2_2:52539155-52539174 | Msa0257010:intron | 30.0% |
| ATGAAGAATAGCAATGAGTT+GGG | + | chr2_2:52539204-52539223 | Msa0257010:intron | 30.0% | |
| TTCAATTTAGTAAGAACTCG+AGG | + | chr2_2:52539375-52539394 | Msa0257010:intron | 30.0% | |
| TCAATTTAGTAAGAACTCGA+GGG | + | chr2_2:52539376-52539395 | Msa0257010:intron | 30.0% | |
| GCATATGGAAAAACATTTGT+TGG | - | chr2_2:52539581-52539600 | None:intergenic | 30.0% | |
| TACTTGAAACATTTGGACTA+GGG | - | chr2_2:52539623-52539642 | None:intergenic | 30.0% | |
| TTACTTGAAACATTTGGACT+AGG | - | chr2_2:52539624-52539643 | None:intergenic | 30.0% | |
| !!! | GTTTTTTATGGTGTTTTGAC+AGG | + | chr2_2:52539866-52539885 | Msa0257010:intron | 30.0% |
| CTAGCAGAAGAAATAAAGAA+AGG | + | chr2_2:52539919-52539938 | Msa0257010:CDS | 30.0% | |
| TGCAGAAGGAAATGTAAATT+TGG | - | chr2_2:52540001-52540020 | None:intergenic | 30.0% | |
| TGCTCAATTATATGACACTA+TGG | - | chr2_2:52540026-52540045 | None:intergenic | 30.0% | |
| TAACACATTTATGTGCTCTA+TGG | - | chr2_2:52540079-52540098 | None:intergenic | 30.0% | |
| ! | GCTGTTTCCAAAAACTATTA+TGG | + | chr2_2:52540367-52540386 | Msa0257010:intron | 30.0% |
| ! | AAGCTCTCCATAATAGTTTT+TGG | - | chr2_2:52540377-52540396 | None:intergenic | 30.0% |
| TCGAATAAACCAATCAAAAC+TGG | + | chr2_2:52540465-52540484 | Msa0257010:intron | 30.0% | |
| AGCTAAAAGATAACAGGATA+CGG | - | chr2_2:52540493-52540512 | None:intergenic | 30.0% | |
| !! | CTCATTATTCTGGTCTTATT+TGG | + | chr2_2:52540994-52541013 | Msa0257010:intron | 30.0% |
| ! | TCAAATAAGTCGATTCAAAC+TGG | + | chr2_2:52541246-52541265 | Msa0257010:intron | 30.0% |
| ! | AAACATTTGGAATCCATTAC+AGG | + | chr2_2:52541316-52541335 | Msa0257010:intron | 30.0% |
| GGAATGATATTTGTTCCAAT+CGG | + | chr2_2:52541369-52541388 | Msa0257010:CDS | 30.0% | |
| !!! | AGGAATTTTTTTGCAGAAAC+AGG | - | chr2_2:52541683-52541702 | None:intergenic | 30.0% |
| GCTTTGTATGTGTGTTATAT+AGG | + | chr2_2:52541724-52541743 | Msa0257010:three_prime_UTR | 30.0% | |
| TCTGGATGATTTAGAGACTT+GGG | - | chr2_2:52535519-52535538 | None:intergenic | 35.0% | |
| TTCTGGATGATTTAGAGACT+TGG | - | chr2_2:52535520-52535539 | None:intergenic | 35.0% | |
| TGTTGTAGGTTTAAGGGATT+GGG | - | chr2_2:52535644-52535663 | None:intergenic | 35.0% | |
| TTGTTGTAGGTTTAAGGGAT+TGG | - | chr2_2:52535645-52535664 | None:intergenic | 35.0% | |
| AGGAAGTAGTCAATTGTTGT+AGG | - | chr2_2:52535658-52535677 | None:intergenic | 35.0% | |
| TGTGGTGAGAAGAGTAATAA+GGG | - | chr2_2:52535861-52535880 | None:intergenic | 35.0% | |
| TTGTGGTGAGAAGAGTAATA+AGG | - | chr2_2:52535862-52535881 | None:intergenic | 35.0% | |
| CAAGAGGAGTGATATCAATA+GGG | - | chr2_2:52536301-52536320 | None:intergenic | 35.0% | |
| TCAAGAGGAGTGATATCAAT+AGG | - | chr2_2:52536302-52536321 | None:intergenic | 35.0% | |
| GGAGTGATATCAATCCATAT+AGG | - | chr2_2:52536453-52536472 | None:intergenic | 35.0% | |
| AAAATCAAAGGCCTTAGCTT+AGG | + | chr2_2:52536625-52536644 | Msa0257010:intron | 35.0% | |
| TCTTCATCATCAATCATCCA+CGG | - | chr2_2:52536746-52536765 | None:intergenic | 35.0% | |
| ! | AACTTCTTAACTTGGACCTA+AGG | + | chr2_2:52537226-52537245 | Msa0257010:intron | 35.0% |
| AAAAGTTGTGTTGTAGCATG+TGG | - | chr2_2:52537473-52537492 | None:intergenic | 35.0% | |
| ! | CAACTCAGGACAAACTTTTA+TGG | - | chr2_2:52537577-52537596 | None:intergenic | 35.0% |
| !!! | CTGTCTTGTGTTATTTTGTC+TGG | + | chr2_2:52537599-52537618 | Msa0257010:intron | 35.0% |
| ! | GCAACTTTGGAAAAGTTATG+GGG | - | chr2_2:52537830-52537849 | None:intergenic | 35.0% |
| ! | CGCAACTTTGGAAAAGTTAT+GGG | - | chr2_2:52537831-52537850 | None:intergenic | 35.0% |
| ! | TCGCAACTTTGGAAAAGTTA+TGG | - | chr2_2:52537832-52537851 | None:intergenic | 35.0% |
| ! | CTTTTCCAAAGTTGCGATTT+TGG | + | chr2_2:52537835-52537854 | Msa0257010:intron | 35.0% |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | - | chr2_2:52538012-52538031 | None:intergenic | 35.0% |
| CGTGTTTATGATTATGGTGT+TGG | - | chr2_2:52538313-52538332 | None:intergenic | 35.0% | |
| ! | ACCTTTGAAGACTTCATCAA+TGG | + | chr2_2:52538448-52538467 | Msa0257010:intron | 35.0% |
| ! | AGAATCCCTTTTGATGTGTT+TGG | + | chr2_2:52538850-52538869 | Msa0257010:intron | 35.0% |
| ACAAGCCAAACACATCAAAA+GGG | - | chr2_2:52538858-52538877 | None:intergenic | 35.0% | |
| AACAAGCCAAACACATCAAA+AGG | - | chr2_2:52538859-52538878 | None:intergenic | 35.0% | |
| GATGAAGAATAGCAATGAGT+TGG | + | chr2_2:52539203-52539222 | Msa0257010:intron | 35.0% | |
| TGAAGAATAGCAATGAGTTG+GGG | + | chr2_2:52539205-52539224 | Msa0257010:intron | 35.0% | |
| ! | CTTTTATGAACCAAGCAATC+GGG | - | chr2_2:52539252-52539271 | None:intergenic | 35.0% |
| ! | CCTTTTATGAACCAAGCAAT+CGG | - | chr2_2:52539253-52539272 | None:intergenic | 35.0% |
| AAGTAACTGAGATCCATTTG+AGG | + | chr2_2:52539543-52539562 | Msa0257010:intron | 35.0% | |
| AGTAACTGAGATCCATTTGA+GGG | + | chr2_2:52539544-52539563 | Msa0257010:intron | 35.0% | |
| GATCATAATCATTTCTCTGC+TGG | + | chr2_2:52539753-52539772 | Msa0257010:intron | 35.0% | |
| ! | GATCTTATCTATTTAGCTCC+TGG | + | chr2_2:52539780-52539799 | Msa0257010:intron | 35.0% |
| AGAATTGTGCAAAATTGTCC+AGG | - | chr2_2:52539801-52539820 | None:intergenic | 35.0% | |
| !! | TGGCTGGTTAAATGTTTTGT+TGG | + | chr2_2:52540201-52540220 | Msa0257010:intron | 35.0% |
| !!! | AAGTTCCTTTGTTTTGACCA+TGG | + | chr2_2:52540226-52540245 | Msa0257010:intron | 35.0% |
| CTAAAAGATAACAGGATACG+GGG | - | chr2_2:52540491-52540510 | None:intergenic | 35.0% | |
| GCTAAAAGATAACAGGATAC+GGG | - | chr2_2:52540492-52540511 | None:intergenic | 35.0% | |
| !! | AGTTCATTTGGTGTAATGAG+TGG | - | chr2_2:52540783-52540802 | None:intergenic | 35.0% |
| CCATCATTCCAAATCTTGTT+GGG | - | chr2_2:52540836-52540855 | None:intergenic | 35.0% | |
| ! | AAAGCTTTTCTAGATGCTAC+TGG | + | chr2_2:52540867-52540886 | Msa0257010:CDS | 35.0% |
| !! | TGGTAATGGAGTAAGAAACA+AGG | - | chr2_2:52541273-52541292 | None:intergenic | 35.0% |
| TAATAGCAGTAAGCCTGTAA+TGG | - | chr2_2:52541332-52541351 | None:intergenic | 35.0% | |
| GTTCCAATCGGTTATACATT+CGG | + | chr2_2:52541381-52541400 | Msa0257010:CDS | 35.0% | |
| ATTGTTTGTTCTTGTTAGGC+TGG | + | chr2_2:52541793-52541812 | Msa0257010:three_prime_UTR | 35.0% | |
| TTGTTTGTTCTTGTTAGGCT+GGG | + | chr2_2:52541794-52541813 | Msa0257010:three_prime_UTR | 35.0% | |
| TGCATTGTATCAACCAAGTT+TGG | + | chr2_2:52541890-52541909 | Msa0257010:three_prime_UTR | 35.0% | |
| !!! | GACTTGGGTAGTGGAATTTT+GGG | - | chr2_2:52535504-52535523 | None:intergenic | 40.0% |
| !!! | AGACTTGGGTAGTGGAATTT+TGG | - | chr2_2:52535505-52535524 | None:intergenic | 40.0% |
| TGATTTAGAGACTTGGGTAG+TGG | - | chr2_2:52535513-52535532 | None:intergenic | 40.0% | |
| !! | GAACGTTTAAACGTCGATTC+TGG | - | chr2_2:52535537-52535556 | None:intergenic | 40.0% |
| AGGTTTAAGGGATTGGGATT+AGG | - | chr2_2:52535638-52535657 | None:intergenic | 40.0% | |
| TTAGGGGAAAGAGAAAGTTG+TGG | - | chr2_2:52535879-52535898 | None:intergenic | 40.0% | |
| TGACCAAACTCGACATAAAC+AGG | + | chr2_2:52536233-52536252 | Msa0257010:intron | 40.0% | |
| !! | GCTAAGGCCTTTGATTTTGT+AGG | - | chr2_2:52536623-52536642 | None:intergenic | 40.0% |
| CTGGAATAGGGACAAATTGA+AGG | + | chr2_2:52537393-52537412 | Msa0257010:intron | 40.0% | |
| AACACAAGACAGAACAACTC+AGG | - | chr2_2:52537591-52537610 | None:intergenic | 40.0% | |
| TGCCACAGTTGCAAAACTTA+GGG | - | chr2_2:52537890-52537909 | None:intergenic | 40.0% | |
| !! | ATCGAGTCAAAATTGGCCTT+GGG | - | chr2_2:52537921-52537940 | None:intergenic | 40.0% |
| AGCGTAGATCGAGTCAAAAT+TGG | - | chr2_2:52537928-52537947 | None:intergenic | 40.0% | |
| CTACAGTTGCAAAACTTCGA+GGG | + | chr2_2:52538018-52538037 | Msa0257010:intron | 40.0% | |
| GCCATTGATGAAGTCTTCAA+AGG | - | chr2_2:52538452-52538471 | None:intergenic | 40.0% | |
| !! | GGCTTGTTCTGCATTTTGTT+TGG | + | chr2_2:52538871-52538890 | Msa0257010:intron | 40.0% |
| !!! | AAGTGTGTTTTTTGTGGCAG+AGG | - | chr2_2:52538930-52538949 | None:intergenic | 40.0% |
| CCGATTGCTTGGTTCATAAA+AGG | + | chr2_2:52539250-52539269 | Msa0257010:intron | 40.0% | |
| CACTTGAAACTTGAAAGCAG+TGG | - | chr2_2:52539461-52539480 | None:intergenic | 40.0% | |
| ATGGATCTCAGTTACTTCGA+GGG | - | chr2_2:52539540-52539559 | None:intergenic | 40.0% | |
| AATGGATCTCAGTTACTTCG+AGG | - | chr2_2:52539541-52539560 | None:intergenic | 40.0% | |
| GTAACTGAGATCCATTTGAG+GGG | + | chr2_2:52539545-52539564 | Msa0257010:intron | 40.0% | |
| ! | GGAAAAACATTTGTTGGGAG+AGG | - | chr2_2:52539575-52539594 | None:intergenic | 40.0% |
| TTTCTCCACATGTCCATACA+TGG | - | chr2_2:52539899-52539918 | None:intergenic | 40.0% | |
| AATACTTGCCTGCCATAGTT+TGG | - | chr2_2:52539971-52539990 | None:intergenic | 40.0% | |
| ATGACACTATGGAATGCAGA+AGG | - | chr2_2:52540015-52540034 | None:intergenic | 40.0% | |
| CATGCCATTCAGCTGTTATA+TGG | + | chr2_2:52540181-52540200 | Msa0257010:intron | 40.0% | |
| TCTTTATCCAAACAGGACCA+TGG | - | chr2_2:52540246-52540265 | None:intergenic | 40.0% | |
| ACTGTACTTAATCTGTGAGC+AGG | + | chr2_2:52540695-52540714 | Msa0257010:intron | 40.0% | |
| ATGAGTGGTACATCACTCTT+GGG | - | chr2_2:52540768-52540787 | None:intergenic | 40.0% | |
| AATGAGTGGTACATCACTCT+TGG | - | chr2_2:52540769-52540788 | None:intergenic | 40.0% | |
| TACACCAAATGAACTGTCTG+AGG | + | chr2_2:52540788-52540807 | Msa0257010:CDS | 40.0% | |
| ACACCAAATGAACTGTCTGA+GGG | + | chr2_2:52540789-52540808 | Msa0257010:CDS | 40.0% | |
| ! | TTTGGCTTCCCAACAAGATT+TGG | + | chr2_2:52540825-52540844 | Msa0257010:CDS | 40.0% |
| ! | CCCAACAAGATTTGGAATGA+TGG | + | chr2_2:52540833-52540852 | Msa0257010:CDS | 40.0% |
| GCCATCATTCCAAATCTTGT+TGG | - | chr2_2:52540837-52540856 | None:intergenic | 40.0% | |
| GCACATCTGTCTCATTATTC+TGG | + | chr2_2:52540984-52541003 | Msa0257010:intron | 40.0% | |
| ACAGCATTTGTGTGACTGTT+TGG | - | chr2_2:52541212-52541231 | None:intergenic | 40.0% | |
| ! | ATTACTCAGCTGGTTCATCA+TGG | + | chr2_2:52541348-52541367 | Msa0257010:CDS | 40.0% |
| ! | TTTGAGATGGAGCAAGTGAA+AGG | + | chr2_2:52541414-52541433 | Msa0257010:CDS | 40.0% |
| TGGCAAGATATTTCCCTTGA+TGG | - | chr2_2:52541518-52541537 | None:intergenic | 40.0% | |
| TTCCTTGAGCTTCTTTGTGA+TGG | - | chr2_2:52541541-52541560 | None:intergenic | 40.0% | |
| GTGTGTTATATAGGATGCAG+TGG | + | chr2_2:52541733-52541752 | Msa0257010:three_prime_UTR | 40.0% | |
| !! | GTAGTGGAATTTTGGGTGCT+GGG | - | chr2_2:52535497-52535516 | None:intergenic | 45.0% |
| ACCCTAAAGAACGAAGAACG+CGG | - | chr2_2:52535753-52535772 | None:intergenic | 45.0% | |
| ACGCGTACAACTGAGAAAAG+AGG | - | chr2_2:52535801-52535820 | None:intergenic | 45.0% | |
| TGTCGAGTTTGGTCAGAGAT+TGG | - | chr2_2:52536228-52536247 | None:intergenic | 45.0% | |
| TCGCCTGTTTATGTCGAGTT+TGG | - | chr2_2:52536239-52536258 | None:intergenic | 45.0% | |
| AAACTCGACATAAACAGGCG+AGG | + | chr2_2:52536238-52536257 | Msa0257010:intron | 45.0% | |
| !! | GCTTTCTAGAGCAGTCTCAT+TGG | + | chr2_2:52536710-52536729 | Msa0257010:intron | 45.0% |
| ACAGTTGCAAAACTTAGGGG+CGG | - | chr2_2:52537886-52537905 | None:intergenic | 45.0% | |
| GCCACAGTTGCAAAACTTAG+GGG | - | chr2_2:52537889-52537908 | None:intergenic | 45.0% | |
| CTGCCACAGTTGCAAAACTT+AGG | - | chr2_2:52537891-52537910 | None:intergenic | 45.0% | |
| !! | TCGAGTCAAAATTGGCCTTG+GGG | - | chr2_2:52537920-52537939 | None:intergenic | 45.0% |
| ! | GATCGAGTCAAAATTGGCCT+TGG | - | chr2_2:52537922-52537941 | None:intergenic | 45.0% |
| GCTACAGTTGCAAAACTTCG+AGG | + | chr2_2:52538017-52538036 | Msa0257010:intron | 45.0% | |
| GGATGGTTCCAATTAGAGGA+TGG | - | chr2_2:52538909-52538928 | None:intergenic | 45.0% | |
| CAGAGGATGGTTCCAATTAG+AGG | - | chr2_2:52538913-52538932 | None:intergenic | 45.0% | |
| !!! | GTGTTTTTTGTGGCAGAGGA+TGG | - | chr2_2:52538926-52538945 | None:intergenic | 45.0% |
| TTGTGCACGAAGGATAGCTT+TGG | - | chr2_2:52539500-52539519 | None:intergenic | 45.0% | |
| GTTTCTACAGTTGTGCACGA+AGG | - | chr2_2:52539510-52539529 | None:intergenic | 45.0% | |
| TGGATCTCAGTTACTTCGAG+GGG | - | chr2_2:52539539-52539558 | None:intergenic | 45.0% | |
| ! | TTTCCATATGCGCACTGATC+AGG | + | chr2_2:52539590-52539609 | Msa0257010:intron | 45.0% |
| ! | TTCCATATGCGCACTGATCA+GGG | + | chr2_2:52539591-52539610 | Msa0257010:intron | 45.0% |
| GACAGGTACTACTCCATGTA+TGG | + | chr2_2:52539883-52539902 | Msa0257010:intron | 45.0% | |
| CTACTCCATGTATGGACATG+TGG | + | chr2_2:52539891-52539910 | Msa0257010:CDS | 45.0% | |
| !! | AAAGAAAGGTGCTGCTTCTG+TGG | + | chr2_2:52539933-52539952 | Msa0257010:CDS | 45.0% |
| !! | AAGGCGTTGAAGCCAAACTA+TGG | + | chr2_2:52539956-52539975 | Msa0257010:CDS | 45.0% |
| CCAGCCATATAACAGCTGAA+TGG | - | chr2_2:52540188-52540207 | None:intergenic | 45.0% | |
| CCATTCAGCTGTTATATGGC+TGG | + | chr2_2:52540185-52540204 | Msa0257010:intron | 45.0% | |
| CAGGACCATGGTCAAAACAA+AGG | - | chr2_2:52540234-52540253 | None:intergenic | 45.0% | |
| !! | GTTTTGACCATGGTCCTGTT+TGG | + | chr2_2:52540236-52540255 | Msa0257010:intron | 45.0% |
| TCACCCTCAGACAGTTCATT+TGG | - | chr2_2:52540795-52540814 | None:intergenic | 45.0% | |
| AATGAACTGTCTGAGGGTGA+TGG | + | chr2_2:52540795-52540814 | Msa0257010:CDS | 45.0% | |
| !!! | GAGGGTGATGGTTTTGTCTT+TGG | + | chr2_2:52540807-52540826 | Msa0257010:CDS | 45.0% |
| ! | GCTTTTCTAGATGCTACTGG+TGG | + | chr2_2:52540870-52540889 | Msa0257010:CDS | 45.0% |
| TAGATGCTACTGGTGGTTTG+TGG | + | chr2_2:52540877-52540896 | Msa0257010:CDS | 45.0% | |
| GCTTACTGCTATTACTCAGC+TGG | + | chr2_2:52541338-52541357 | Msa0257010:CDS | 45.0% | |
| GCTCCGAATGTATAACCGAT+TGG | - | chr2_2:52541387-52541406 | None:intergenic | 45.0% | |
| ATCGGTTATACATTCGGAGC+CGG | + | chr2_2:52541387-52541406 | Msa0257010:CDS | 45.0% | |
| TTGCTCCATCTCAAACATGC+CGG | - | chr2_2:52541409-52541428 | None:intergenic | 45.0% | |
| GTGAAAGGTGGAAGTCCATA+TGG | + | chr2_2:52541429-52541448 | Msa0257010:CDS | 45.0% | |
| TGCTGCAATTCAAGCTCACT+TGG | - | chr2_2:52541489-52541508 | None:intergenic | 45.0% | |
| TTGCAGCAAGCATTCCATCA+AGG | + | chr2_2:52541501-52541520 | Msa0257010:CDS | 45.0% | |
| TGCAGCAAGCATTCCATCAA+GGG | + | chr2_2:52541502-52541521 | Msa0257010:CDS | 45.0% | |
| CTTGAGCTTCTTTGTGATGG+TGG | - | chr2_2:52541538-52541557 | None:intergenic | 45.0% | |
| CACCATCACAAAGAAGCTCA+AGG | + | chr2_2:52541536-52541555 | Msa0257010:CDS | 45.0% | |
| AGGCAATGCTCTACCAAACT+TGG | - | chr2_2:52541906-52541925 | None:intergenic | 45.0% | |
| !!! | GAAATTTTTTTTTTTTTTTA+GGG | - | chr2_2:52536583-52536602 | None:intergenic | 5.0% |
| !!! | TGAAATTTTTTTTTTTTTTT+AGG | - | chr2_2:52536584-52536603 | None:intergenic | 5.0% |
| !!! | ATTATTTTAAAATATTAATG+TGG | + | chr2_2:52536940-52536959 | Msa0257010:intron | 5.0% |
| !!! | ATAATTAAAATTTACTTTTT+TGG | - | chr2_2:52537662-52537681 | None:intergenic | 5.0% |
| !!! | AATTAAATATATTAAGTTTT+AGG | + | chr2_2:52537787-52537806 | Msa0257010:intron | 5.0% |
| !!! | TTTAAAATATAAACAAAAAT+TGG | - | chr2_2:52538134-52538153 | None:intergenic | 5.0% |
| !!! | TTTTTGTTTATATTTTAAAA+TGG | + | chr2_2:52538135-52538154 | Msa0257010:intron | 5.0% |
| !! | AAATATAAAAATCAAATAAA+AGG | - | chr2_2:52538965-52538984 | None:intergenic | 5.0% |
| !!! | TTAATTAAAAATGTTTTTTA+TGG | + | chr2_2:52539854-52539873 | Msa0257010:intron | 5.0% |
| !!! | TATTAATATTTTAAAACATT+TGG | + | chr2_2:52541303-52541322 | Msa0257010:intron | 5.0% |
| !!! | GAATTTTGGGTGCTGGGTGA+AGG | - | chr2_2:52535491-52535510 | None:intergenic | 50.0% |
| !!! | GGTAGTGGAATTTTGGGTGC+TGG | - | chr2_2:52535498-52535517 | None:intergenic | 50.0% |
| AGCCGCGTTCTTCGTTCTTT+AGG | + | chr2_2:52535748-52535767 | Msa0257010:intron | 50.0% | |
| GCCGCGTTCTTCGTTCTTTA+GGG | + | chr2_2:52535749-52535768 | Msa0257010:intron | 50.0% | |
| ACATAAACAGGCGAGGTCGT+AGG | + | chr2_2:52536245-52536264 | Msa0257010:intron | 50.0% | |
| TCATTGGCACATGAAGACCG+TGG | + | chr2_2:52536726-52536745 | Msa0257010:intron | 50.0% | |
| ! | GCCCCTAAGTTTTGCAACTG+TGG | + | chr2_2:52537885-52537904 | Msa0257010:intron | 50.0% |
| !! | CGAGTCAAAATTGGCCTTGG+GGG | - | chr2_2:52537919-52537938 | None:intergenic | 50.0% |
| TACACGTGGCACCTCACTTA+CGG | - | chr2_2:52537960-52537979 | None:intergenic | 50.0% | |
| TTAGTAAGAACTCGAGGGCG+AGG | + | chr2_2:52539381-52539400 | Msa0257010:intron | 50.0% | |
| ATCCCTGATCAGTGCGCATA+TGG | - | chr2_2:52539596-52539615 | None:intergenic | 50.0% | |
| !! | AAAGGTGCTGCTTCTGTGGA+AGG | + | chr2_2:52539937-52539956 | Msa0257010:CDS | 50.0% |
| CGTTGAAGCCAAACTATGGC+AGG | + | chr2_2:52539960-52539979 | Msa0257010:CDS | 50.0% | |
| CAGCATCAGTTCCTGAGCTA+AGG | + | chr2_2:52540044-52540063 | Msa0257010:intron | 50.0% | |
| GGACAAATCAGCCTTAGCTC+AGG | - | chr2_2:52540058-52540077 | None:intergenic | 50.0% | |
| !! | GATACGGGGCCAGTTTTGAT+TGG | - | chr2_2:52540477-52540496 | None:intergenic | 50.0% |
| AGTGGTACATCACTCTTGGG+TGG | - | chr2_2:52540765-52540784 | None:intergenic | 50.0% | |
| ! | TGGAAAGCACAATCGCTTGC+AGG | + | chr2_2:52540897-52540916 | Msa0257010:CDS | 50.0% |
| !! | ACCGGTGCTGTAGAAGATTC+CGG | - | chr2_2:52540931-52540950 | None:intergenic | 50.0% |
| !! | TTCTACAGCACCGGTTCTCA+AGG | + | chr2_2:52540936-52540955 | Msa0257010:CDS | 50.0% |
| GAGATGGAGCAAGTGAAAGG+TGG | + | chr2_2:52541417-52541436 | Msa0257010:CDS | 50.0% | |
| GCGTATGTTCCTGCACCATA+TGG | - | chr2_2:52541447-52541466 | None:intergenic | 50.0% | |
| TATGGTGCAGGAACATACGC+CGG | + | chr2_2:52541447-52541466 | Msa0257010:CDS | 50.0% | |
| TAGCTCGCAACTGCGAGCAA+TGG | - | chr2_2:52535389-52535408 | None:intergenic | 55.0% | |
| TTGCTCGCAGTTGCGAGCTA+AGG | + | chr2_2:52535389-52535408 | Msa0257010:CDS | 55.0% | |
| TGCTCGCAGTTGCGAGCTAA+GGG | + | chr2_2:52535390-52535409 | Msa0257010:CDS | 55.0% | |
| CGAGCTAAGGGGTTACTCAC+AGG | + | chr2_2:52535402-52535421 | Msa0257010:CDS | 55.0% | |
| GGTTACTCACAGGTGCGAGT+AGG | + | chr2_2:52535412-52535431 | Msa0257010:CDS | 55.0% | |
| CTGCGAGCGATGACAGAACA+GGG | + | chr2_2:52535446-52535465 | Msa0257010:CDS | 55.0% | |
| AGAACGAAGAACGCGGCTGT+TGG | - | chr2_2:52535746-52535765 | None:intergenic | 55.0% | |
| GGGGGCCAAAATCGCAACTT+TGG | - | chr2_2:52538063-52538082 | None:intergenic | 55.0% | |
| CTGACGTGACACCGTAAGTG+AGG | + | chr2_2:52537946-52537965 | Msa0257010:intron | 55.0% | |
| !! | GTTGCGATTTTGGCCCCCTA+AGG | - | chr2_2:52537845-52537864 | None:intergenic | 55.0% |
| GGGGGCCAAAATCGCAACTT+TGG | + | chr2_2:52538063-52538082 | Msa0257010:intron | 55.0% | |
| !! | CGGGACGAGGGCATTAACAT+CGG | - | chr2_2:52539233-52539252 | None:intergenic | 55.0% |
| GAACCAAGCAATCGGGACGA+GGG | - | chr2_2:52539245-52539264 | None:intergenic | 55.0% | |
| TGAACCAAGCAATCGGGACG+AGG | - | chr2_2:52539246-52539265 | None:intergenic | 55.0% | |
| GGAGAGGTCAACCCCTCAAA+TGG | - | chr2_2:52539559-52539578 | None:intergenic | 55.0% | |
| GGTACCTGAGACTCTGCAAG+AGG | + | chr2_2:52540716-52540735 | Msa0257010:intron | 55.0% | |
| ACCTGAGACTCTGCAAGAGG+AGG | + | chr2_2:52540719-52540738 | Msa0257010:CDS | 55.0% | |
| ACCTCCTCTTGCAGAGTCTC+AGG | - | chr2_2:52540723-52540742 | None:intergenic | 55.0% | |
| !! | ACTCTGCAAGAGGAGGTGCT+TGG | + | chr2_2:52540726-52540745 | Msa0257010:CDS | 55.0% |
| GTGCTGTAGAAGATTCCGGC+AGG | - | chr2_2:52540927-52540946 | None:intergenic | 55.0% | |
| GCCGGAATCTTCTACAGCAC+CGG | + | chr2_2:52540927-52540946 | Msa0257010:CDS | 55.0% | |
| !! | TACAGCACCGGTTCTCAAGG+CGG | + | chr2_2:52540939-52540958 | Msa0257010:CDS | 55.0% |
| GGTGGAAGTCCATATGGTGC+AGG | + | chr2_2:52541435-52541454 | Msa0257010:CDS | 55.0% | |
| TGGCTGTCTTGAACCATCGC+CGG | - | chr2_2:52541469-52541488 | None:intergenic | 55.0% | |
| GCTCGCAGTTGCGAGCTAAG+GGG | + | chr2_2:52535391-52535410 | Msa0257010:CDS | 60.0% | |
| GCTGCGAGCGATGACAGAAC+AGG | + | chr2_2:52535445-52535464 | Msa0257010:CDS | 60.0% | |
| CTGTGGCAGTTTGACCCCCA+AGG | + | chr2_2:52537902-52537921 | Msa0257010:intron | 60.0% | |
| !! | GTAGCAGTTTTGGCCCCCCA+AGG | - | chr2_2:52538002-52538021 | None:intergenic | 60.0% |
| ATGCCCTCGTCCCGATTGCT+TGG | + | chr2_2:52539239-52539258 | Msa0257010:intron | 60.0% | |
| GTAAGAACTCGAGGGCGAGG+TGG | + | chr2_2:52539384-52539403 | Msa0257010:intron | 60.0% | |
| CGAGGGCGAGGTGGTAGAAA+AGG | + | chr2_2:52539393-52539412 | Msa0257010:intron | 60.0% | |
| TTGTCCGCCGCCTTGAGAAC+CGG | - | chr2_2:52540949-52540968 | None:intergenic | 60.0% | |
| CGGAGCCGGCATGTTTGAGA+TGG | + | chr2_2:52541401-52541420 | Msa0257010:CDS | 60.0% | |
| TCGCTTGCAGGCAAGCCTGC+CGG | + | chr2_2:52540909-52540928 | Msa0257010:CDS | 65.0% | |
| !! | AGCACCGGTTCTCAAGGCGG+CGG | + | chr2_2:52540942-52540961 | Msa0257010:CDS | 65.0% |
| GCAGGAACATACGCCGGCGA+TGG | + | chr2_2:52541453-52541472 | Msa0257010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 52535349 | 52541963 | 52535349 | ID=Msa0257010;Name=Msa0257010 |
| chr2_2 | mRNA | 52535349 | 52541963 | 52535349 | ID=Msa0257010-mRNA-1;Parent=Msa0257010;Name=Msa0257010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.33|0.25|0.75|1|1|4|394|235 |
| chr2_2 | exon | 52535349 | 52535467 | 52535349 | ID=Msa0257010-mRNA-1:exon:15786;Parent=Msa0257010-mRNA-1 |
| chr2_2 | exon | 52539888 | 52539981 | 52539888 | ID=Msa0257010-mRNA-1:exon:15787;Parent=Msa0257010-mRNA-1 |
| chr2_2 | exon | 52540717 | 52540979 | 52540717 | ID=Msa0257010-mRNA-1:exon:15788;Parent=Msa0257010-mRNA-1 |
| chr2_2 | exon | 52541338 | 52541963 | 52541338 | ID=Msa0257010-mRNA-1:exon:15789;Parent=Msa0257010-mRNA-1 |
| chr2_2 | CDS | 52535349 | 52535467 | 52535349 | ID=Msa0257010-mRNA-1:cds;Parent=Msa0257010-mRNA-1 |
| chr2_2 | CDS | 52539888 | 52539981 | 52539888 | ID=Msa0257010-mRNA-1:cds;Parent=Msa0257010-mRNA-1 |
| chr2_2 | CDS | 52540717 | 52540979 | 52540717 | ID=Msa0257010-mRNA-1:cds;Parent=Msa0257010-mRNA-1 |
| chr2_2 | CDS | 52541338 | 52541569 | 52541338 | ID=Msa0257010-mRNA-1:cds;Parent=Msa0257010-mRNA-1 |
| chr2_2 | three_prime_UTR | 52541570 | 52541963 | 52541570 | ID=Msa0257010-mRNA-1:three_prime_utr;Parent=Msa0257010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
