AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137570 MtrunA17_Chr1g0209771 97.853 326 7 0 1 326 1 326 0.0 652
Msa0137570 MtrunA17_Chr6g0464791 55.128 234 105 0 1 234 1 234 1.67e-86 271
Msa0137570 MtrunA17_Chr8g0370931 53.030 198 93 0 7 204 21 218 8.73e-77 241
Msa0137570 MtrunA17_Chr6g0487991 51.269 197 96 0 7 203 1 197 4.03e-69 233
Msa0137570 MtrunA17_Chr4g0042021 32.827 329 202 7 7 325 1 320 4.55e-47 163
Msa0137570 MtrunA17_Chr1g0210081 39.779 181 108 1 4 183 5 185 2.12e-39 142
Msa0137570 MtrunA17_Chr2g0324121 40.120 167 100 0 14 180 11 177 2.04e-38 143
Msa0137570 MtrunA17_Chr7g0214961 39.024 164 100 0 13 176 8 171 3.52e-35 132
Msa0137570 MtrunA17_Chr2g0331801 32.941 170 105 1 15 184 12 172 1.88e-26 108
Msa0137570 MtrunA17_Chr4g0004491 30.531 226 144 6 13 238 13 225 1.97e-26 107
Msa0137570 MtrunA17_Chr8g0390551 28.415 183 121 2 3 185 1 173 3.91e-21 94.0
Msa0137570 MtrunA17_Chr6g0485461 28.947 228 143 4 2 220 56 273 3.43e-20 91.3
Msa0137570 MtrunA17_Chr7g0262101 27.742 155 107 2 30 184 35 184 2.96e-14 70.5
Msa0137570 MtrunA17_Chr7g0260911 29.126 103 73 0 96 198 4 106 2.82e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137570 AT1G25420.1 60.625 320 112 4 1 318 1 308 5.25e-125 361
Msa0137570 AT1G25420.4 59.386 293 105 4 28 318 1 281 4.92e-108 317
Msa0137570 AT1G34220.2 53.942 241 108 1 1 238 1 241 2.97e-87 274
Msa0137570 AT1G34220.1 47.970 271 108 2 1 238 1 271 9.31e-81 258
Msa0137570 AT1G25420.3 55.378 251 98 4 70 318 2 240 1.77e-79 243
Msa0137570 AT1G25420.2 55.378 251 98 4 70 318 2 240 1.77e-79 243
Msa0137570 AT4G35730.1 51.942 206 99 0 7 212 21 226 2.43e-76 241
Msa0137570 AT4G29440.1 45.604 182 99 0 4 185 1 182 1.94e-58 203
Msa0137570 AT2G19710.1 35.028 354 166 5 4 312 1 335 2.81e-58 202
Msa0137570 AT4G29440.2 48.366 153 79 0 33 185 2 154 7.58e-51 181
Msa0137570 AT1G13340.1 31.959 194 130 1 4 195 5 198 1.62e-32 125
Msa0137570 AT1G79910.1 31.694 183 115 2 3 185 1 173 2.17e-28 113
Msa0137570 AT2G14830.1 32.738 168 113 0 14 181 11 178 9.57e-28 111
Msa0137570 AT1G52315.1 28.571 175 115 3 13 186 10 175 5.22e-23 98.2
Msa0137570 AT1G79910.3 35.714 126 72 1 60 185 2 118 1.77e-22 96.3
Msa0137570 AT1G79910.2 36.585 123 69 1 63 185 46 159 4.13e-22 95.9
Msa0137570 AT4G32350.1 26.776 183 124 2 3 185 1 173 2.45e-20 92.4
Msa0137570 AT4G32350.3 26.776 183 124 2 3 185 1 173 2.45e-20 92.4
Msa0137570 AT1G52315.2 30.769 117 71 3 71 186 18 125 3.40e-16 78.2
Msa0137570 AT1G51900.1 32.278 158 100 3 26 178 25 180 5.17e-14 73.2
Msa0137570 AT3G15490.1 28.788 132 91 1 39 167 2 133 2.56e-13 68.6

Find 68 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATATCGTTTGAACAATT+TGG 0.136117 1_3:+70078943 Msa0137570:three_prime_UTR
AACTTGTTTACTACTAAATA+TGG 0.150771 1_3:+70076901 Msa0137570:CDS
ATGGGCTGCATATGAAATTT+TGG 0.213582 1_3:+70074845 Msa0137570:CDS
CTAAAACTGCAGCAGAATTT+AGG 0.215309 1_3:+70077199 Msa0137570:CDS
TACTTCTGACTCTCAATTAT+AGG 0.241660 1_3:-70074900 None:intergenic
TTCTTTCTAACAATAATTCT+TGG 0.251948 1_3:+70078539 Msa0137570:CDS
ATTTCAATCCTCTGATATAT+TGG 0.254871 1_3:+70078636 Msa0137570:CDS
TCATTCGAGAACAAAATATA+TGG 0.266370 1_3:+70074826 Msa0137570:CDS
AGAGTTGATCTTAACTTTGT+AGG 0.321245 1_3:-70079085 None:intergenic
TCTGAACTTCGTCCTGATTC+AGG 0.335446 1_3:+70076946 Msa0137570:CDS
TTATATCGTTTGAACAATTT+GGG 0.336633 1_3:+70078944 Msa0137570:three_prime_UTR
AAGAACCAATTGCTAGAATT+CGG 0.357696 1_3:+70074706 Msa0137570:CDS
GAATAAGATTAATAGTAATA+AGG 0.375288 1_3:-70079361 None:intergenic
CAACGGAACTTTGATGTGCT+TGG 0.386027 1_3:+70079002 Msa0137570:three_prime_UTR
CGTTGTGTTCACCCCATGTC+AGG 0.397155 1_3:-70078984 None:intergenic
GTGCGATTCACGCCTGAATC+AGG 0.402265 1_3:-70076958 None:intergenic
ATTACCCGAATTCTAGCAAT+TGG 0.402690 1_3:-70074711 None:intergenic
CTAAATCGATGAACTTTGCT+TGG 0.419542 1_3:+70078779 Msa0137570:three_prime_UTR
CTTTCAGTTAGTGCTCCATC+TGG 0.420640 1_3:+70077114 Msa0137570:CDS
TCACTTGCACATAGTGACTT+TGG 0.422099 1_3:+70078721 Msa0137570:CDS
AGAACCAATTGCTAGAATTC+GGG 0.432063 1_3:+70074707 Msa0137570:CDS
TAGAAAGAATAGAAGCTTCA+AGG 0.433370 1_3:-70078525 None:intergenic
ACTTGTTTACTACTAAATAT+GGG 0.437025 1_3:+70076902 Msa0137570:CDS
TGCTACCAACAGAGAGAACT+TGG 0.442231 1_3:-70079055 None:intergenic
TTCTTGATGTGCAATAAGTC+TGG 0.476632 1_3:-70076880 None:intergenic
TTTGCTTGGTATCTCAAGGT+TGG 0.477044 1_3:+70078793 Msa0137570:three_prime_UTR
CATTCGAGAACAAAATATAT+GGG 0.494027 1_3:+70074827 Msa0137570:CDS
AGCGTGGTGATTTAGTTTCG+TGG 0.500125 1_3:+70074324 Msa0137570:five_prime_UTR
GTTCTCTCTGTTGGTAGCAA+TGG 0.504169 1_3:+70079059 Msa0137570:three_prime_UTR
TAAAGCCAAGTTCTCTCTGT+TGG 0.506407 1_3:+70079050 Msa0137570:three_prime_UTR
GATAAAACTCAAGGTCTTGA+CGG 0.511590 1_3:+70077140 Msa0137570:CDS
TGCACGATTTGCAGAAGCTA+TGG 0.518629 1_3:-70078674 None:intergenic
TGACTTTGGATCATTGAAGC+TGG 0.520410 1_3:+70078735 Msa0137570:CDS
GAACTTTGCTTGGTATCTCA+AGG 0.520612 1_3:+70078789 Msa0137570:three_prime_UTR
CAGAAGAATACAATCTAGCA+TGG 0.533676 1_3:+70077169 Msa0137570:CDS
TGCGTGAAATTGCGAGGTTG+AGG 0.541893 1_3:-70074605 None:intergenic
TAAGGTTACTTAATCTTCAA+CGG 0.542740 1_3:-70079343 None:intergenic
ATGGCTTCTCGCAATTCCGA+CGG 0.549527 1_3:-70076817 None:intergenic
CTTAATCAACTCTTTAGCAG+AGG 0.562495 1_3:+70074385 Msa0137570:CDS
GTTGATCTTAACTTTGTAGG+TGG 0.564479 1_3:-70079082 None:intergenic
ATCCTCTGATATATTGGAGA+AGG 0.565767 1_3:+70078642 Msa0137570:CDS
AAGTTAAATAATATGACTGA+TGG 0.570771 1_3:-70079227 None:intergenic
CACCTTGTAAATCCTGACAT+GGG 0.578194 1_3:+70078972 Msa0137570:three_prime_UTR
ACCCCATGTCAGGATTTACA+AGG 0.582262 1_3:-70078974 None:intergenic
ATCTGGAGAGATAAAACTCA+AGG 0.587410 1_3:+70077131 Msa0137570:CDS
ACAAAGTTAAGATCAACTCT+AGG 0.588749 1_3:+70079088 Msa0137570:three_prime_UTR
TGGCTTCTCGCAATTCCGAC+GGG 0.590920 1_3:-70076816 None:intergenic
TTTGGATCATTGAAGCTGGA+AGG 0.592273 1_3:+70078739 Msa0137570:CDS
GTACAGTAAATACCGCAGTA+AGG 0.599724 1_3:-70078829 None:intergenic
GGAGCAAAGCAAGTTGGTGT+CGG 0.600016 1_3:+70078397 Msa0137570:CDS
GCACCTTGTAAATCCTGACA+TGG 0.600463 1_3:+70078971 Msa0137570:three_prime_UTR
CAGGGTGGAGCAAAGCAAGT+TGG 0.607429 1_3:+70078391 Msa0137570:intron
CAATTATAGGTACACGTGCA+AGG 0.612342 1_3:-70074887 None:intergenic
CATACTGAATCGATTTAGCA+AGG 0.613662 1_3:-70079142 None:intergenic
ACGATTTGCAGAAGCTATGG+CGG 0.619875 1_3:-70078671 None:intergenic
ATATGACTGATGGTAAAACA+TGG 0.625788 1_3:-70079217 None:intergenic
TCTTGCATTGAGCCCATCGT+AGG 0.629156 1_3:-70079179 None:intergenic
AGCCTTCTCCAATATATCAG+AGG 0.634844 1_3:-70078644 None:intergenic
ACTTCATGCGTGAAATTGCG+AGG 0.641498 1_3:-70074611 None:intergenic
AGAAGAATACAATCTAGCAT+GGG 0.650670 1_3:+70077170 Msa0137570:CDS
TCAACTCAAACAAATGCGGA+AGG 0.653130 1_3:+70074656 Msa0137570:CDS
ACATAATAGGGAATGCCCGT+CGG 0.666817 1_3:+70076801 Msa0137570:intron
ACCTTGTAAATCCTGACATG+GGG 0.668070 1_3:+70078973 Msa0137570:three_prime_UTR
TGATCTGAGGAAGCAAAGCG+TGG 0.683836 1_3:+70074308 Msa0137570:five_prime_UTR
CTGACATGGGGTGAACACAA+CGG 0.685230 1_3:+70078985 Msa0137570:three_prime_UTR
ATGTTCAACTCAAACAAATG+CGG 0.693836 1_3:+70074652 Msa0137570:CDS
TCTGGTATATCAGAACACCT+AGG 0.708437 1_3:-70076862 None:intergenic
ACATTGTTAAGACCTTACTG+CGG 0.792534 1_3:+70078817 Msa0137570:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGTTTTTTTATCTAAAT+AGG - chr1_3:70075410-70075429 None:intergenic 10.0%
!!! AGTAACAAAATAAAATTTTA+AGG - chr1_3:70076374-70076393 None:intergenic 10.0%
!! TAATATCAAAAAATATATAC+TGG - chr1_3:70077073-70077092 None:intergenic 10.0%
!! AATAACAATAATAAATGAAA+TGG - chr1_3:70078145-70078164 None:intergenic 10.0%
!!! ATGTGTATTTATTTTTATAA+TGG + chr1_3:70078921-70078940 Msa0137570:three_prime_UTR 10.0%
!! TAATTAAGAAACATGTAATT+GGG - chr1_3:70074520-70074539 None:intergenic 15.0%
!! TTAATTAAGAAACATGTAAT+TGG - chr1_3:70074521-70074540 None:intergenic 15.0%
!! ATTAAAACAAAATCTAATGA+TGG - chr1_3:70074548-70074567 None:intergenic 15.0%
!!! TTAATGTTTCTGAATTTAAA+TGG + chr1_3:70075197-70075216 Msa0137570:intron 15.0%
!!! CAAAATAAAATTTTAAGGTT+TGG - chr1_3:70076369-70076388 None:intergenic 15.0%
!! GAATAAGATTAATAGTAATA+AGG - chr1_3:70079364-70079383 None:intergenic 15.0%
!! TTAAATGGTGTAAAACATTA+AGG + chr1_3:70075212-70075231 Msa0137570:intron 20.0%
!! TTGATTTAGATAAAATCTTG+AGG + chr1_3:70075243-70075262 Msa0137570:intron 20.0%
!! TGATTTAGATAAAATCTTGA+GGG + chr1_3:70075244-70075263 Msa0137570:intron 20.0%
!!! GAAAAAAAGTATGAAATAGA+AGG + chr1_3:70075332-70075351 Msa0137570:intron 20.0%
!!! TACAAGTTTGATCTTTTAAA+TGG + chr1_3:70075361-70075380 Msa0137570:intron 20.0%
!! TAAGTTTCATGAAATTGTTT+GGG - chr1_3:70075621-70075640 None:intergenic 20.0%
!! ATAAGTTTCATGAAATTGTT+TGG - chr1_3:70075622-70075641 None:intergenic 20.0%
!! TTATTCTTATATGTATGTGT+AGG - chr1_3:70075819-70075838 None:intergenic 20.0%
!!! TAACTTATTTTAATGTTGTG+AGG - chr1_3:70075867-70075886 None:intergenic 20.0%
!! TAAAACACAAACTACTTTAT+GGG - chr1_3:70076468-70076487 None:intergenic 20.0%
!! ATAAAACACAAACTACTTTA+TGG - chr1_3:70076469-70076488 None:intergenic 20.0%
!!! TGTTTGAAATGATTTTCAAA+AGG + chr1_3:70076559-70076578 Msa0137570:intron 20.0%
!!! TTTTTCACTTATTTCAAACT+TGG + chr1_3:70076621-70076640 Msa0137570:intron 20.0%
!!! TTTTCACTTATTTCAAACTT+GGG + chr1_3:70076622-70076641 Msa0137570:intron 20.0%
!!! GGACGTATTTATAATTTTAT+AGG + chr1_3:70076643-70076662 Msa0137570:intron 20.0%
!!! TATAATTTTATAGGATGCTA+CGG + chr1_3:70076652-70076671 Msa0137570:intron 20.0%
!!! TACTTATTGAGTTTTTAAAC+AGG + chr1_3:70076710-70076729 Msa0137570:intron 20.0%
!!! AACTTGTTTACTACTAAATA+TGG + chr1_3:70076901-70076920 Msa0137570:CDS 20.0%
!! ACTTGTTTACTACTAAATAT+GGG + chr1_3:70076902-70076921 Msa0137570:CDS 20.0%
!! ATGAAATTTGCAATAATATC+CGG - chr1_3:70077422-70077441 None:intergenic 20.0%
!!! TTTTTACTTAGAATTTGAGT+TGG + chr1_3:70077746-70077765 Msa0137570:intron 20.0%
!!! TTTTACTTAGAATTTGAGTT+GGG + chr1_3:70077747-70077766 Msa0137570:intron 20.0%
!! TTCTTTCTAACAATAATTCT+TGG + chr1_3:70078539-70078558 Msa0137570:CDS 20.0%
!! TTATATCGTTTGAACAATTT+GGG + chr1_3:70078944-70078963 Msa0137570:three_prime_UTR 20.0%
!! AAGTTAAATAATATGACTGA+TGG - chr1_3:70079230-70079249 None:intergenic 20.0%
! TTGTGTGTAAGAAAAAAAGA+AGG + chr1_3:70074285-70074304 Msa0137570:five_prime_UTR 25.0%
! TTTCTAACAAAGAAGAAATC+GGG - chr1_3:70074463-70074482 None:intergenic 25.0%
! GTTTCTAACAAAGAAGAAAT+CGG - chr1_3:70074464-70074483 None:intergenic 25.0%
! GTTAGAAACCTTCAAATTAT+TGG + chr1_3:70074475-70074494 Msa0137570:intron 25.0%
! TCAGAAATCCAATAATTTGA+AGG - chr1_3:70074486-70074505 None:intergenic 25.0%
!!! TGAATTGCGTTGTTTTAATT+AGG + chr1_3:70074794-70074813 Msa0137570:intron 25.0%
! TCATTCGAGAACAAAATATA+TGG + chr1_3:70074826-70074845 Msa0137570:CDS 25.0%
! CATTCGAGAACAAAATATAT+GGG + chr1_3:70074827-70074846 Msa0137570:CDS 25.0%
! TCTTAAATGTCTGTTCTTAT+TGG + chr1_3:70074933-70074952 Msa0137570:intron 25.0%
! AGTTTGAACTGAAAATAAAG+AGG - chr1_3:70075122-70075141 None:intergenic 25.0%
!!! ATTATTTCTGAATCTTCATG+AGG + chr1_3:70075159-70075178 Msa0137570:intron 25.0%
!!! TTATTTCTGAATCTTCATGA+GGG + chr1_3:70075160-70075179 Msa0137570:intron 25.0%
! AATTTATGTGTTCTTGAGTA+TGG + chr1_3:70075278-70075297 Msa0137570:intron 25.0%
!! TTGATCTTTTAAATGGACAT+AGG + chr1_3:70075368-70075387 Msa0137570:intron 25.0%
!!! ATAAGCTATTTCTATAGCAA+AGG + chr1_3:70075468-70075487 Msa0137570:intron 25.0%
! GCTGAAAAAATTTCAATGAA+TGG - chr1_3:70076599-70076618 None:intergenic 25.0%
! AGCAAAAATTATACTTGCAA+TGG - chr1_3:70076839-70076858 None:intergenic 25.0%
!!! TTTTTCTTAGAATTTGGGTT+TGG + chr1_3:70077553-70077572 Msa0137570:intron 25.0%
!!! TTTTCTTAGAATTTGGGTTT+GGG + chr1_3:70077554-70077573 Msa0137570:intron 25.0%
!!! ATTTACAAGCCAGTTTTATA+GGG - chr1_3:70077592-70077611 None:intergenic 25.0%
!!! AATTTACAAGCCAGTTTTAT+AGG - chr1_3:70077593-70077612 None:intergenic 25.0%
!!! TATAAAACTGGCTTGTAAAT+TGG + chr1_3:70077592-70077611 Msa0137570:intron 25.0%
! AAAAACCAATGAGTTAAGTT+AGG - chr1_3:70077980-70077999 None:intergenic 25.0%
! ACAAGGAACATGATATTAAA+TGG - chr1_3:70078049-70078068 None:intergenic 25.0%
! CATAATCATGTTGTATGAAA+AGG - chr1_3:70078110-70078129 None:intergenic 25.0%
! ATTACAAGCTGAAAAACTAT+TGG - chr1_3:70078458-70078477 None:intergenic 25.0%
!!! TAGTTTTTCAGCTTGTAATA+CGG + chr1_3:70078459-70078478 Msa0137570:CDS 25.0%
!!! CAGTTTTAGTATCATTGAAT+TGG - chr1_3:70078609-70078628 None:intergenic 25.0%
! ATTTCAATCCTCTGATATAT+TGG + chr1_3:70078636-70078655 Msa0137570:CDS 25.0%
! GTTATATCGTTTGAACAATT+TGG + chr1_3:70078943-70078962 Msa0137570:three_prime_UTR 25.0%
! TAAGGTTACTTAATCTTCAA+CGG - chr1_3:70079346-70079365 None:intergenic 25.0%
AAGAAGAAATCGGGTAATTA+AGG - chr1_3:70074454-70074473 None:intergenic 30.0%
ATGTTCAACTCAAACAAATG+CGG + chr1_3:70074652-70074671 Msa0137570:CDS 30.0%
AAGAACCAATTGCTAGAATT+CGG + chr1_3:70074706-70074725 Msa0137570:CDS 30.0%
CAATTCACCAAAAGATTTGA+AGG - chr1_3:70074737-70074756 None:intergenic 30.0%
!!! ATTGCGTTGTTTTAATTAGG+TGG + chr1_3:70074797-70074816 Msa0137570:intron 30.0%
TACTTCTGACTCTCAATTAT+AGG - chr1_3:70074903-70074922 None:intergenic 30.0%
CTATACAAATCAGTACAGAA+TGG + chr1_3:70075089-70075108 Msa0137570:intron 30.0%
!!! TCACTTTTTAGCACATCAAA+TGG - chr1_3:70075305-70075324 None:intergenic 30.0%
ATTTGATGTGCTAAAAAGTG+AGG + chr1_3:70075304-70075323 Msa0137570:intron 30.0%
ACATAGGCAGAATAGATTTA+GGG + chr1_3:70075384-70075403 Msa0137570:intron 30.0%
! GCTTATTTGAGTTTATCTAG+TGG - chr1_3:70075646-70075665 None:intergenic 30.0%
ACTCATAAGATTCTACCATT+GGG + chr1_3:70075769-70075788 Msa0137570:intron 30.0%
ATAATTACAAGTTTGCCCAA+TGG - chr1_3:70075787-70075806 None:intergenic 30.0%
!! GTTATTTTGTTCATCTGTGA+TGG - chr1_3:70075845-70075864 None:intergenic 30.0%
GTTATGAACATCTTGAATGA+TGG - chr1_3:70075905-70075924 None:intergenic 30.0%
! AGATCAGATTATGTCTTTTG+AGG - chr1_3:70075954-70075973 None:intergenic 30.0%
!!! AATTTTAAGGTTTGGTCCTA+CGG - chr1_3:70076361-70076380 None:intergenic 30.0%
GCACAGGATAATATATTGTT+CGG - chr1_3:70076409-70076428 None:intergenic 30.0%
CCTTCATTCTCTACATAATA+GGG + chr1_3:70076789-70076808 Msa0137570:intron 30.0%
CTGTGAGTTATCTTTAGTTA+TGG + chr1_3:70076980-70076999 Msa0137570:intron 30.0%
AGAAGAATACAATCTAGCAT+GGG + chr1_3:70077170-70077189 Msa0137570:CDS 30.0%
GAAAAATCATGAAGATCTAC+TGG + chr1_3:70077221-70077240 Msa0137570:CDS 30.0%
! AATTTTATGTCCAACAGTGA+AGG - chr1_3:70077279-70077298 None:intergenic 30.0%
GATAGATGCAAGATATCATA+AGG - chr1_3:70077320-70077339 None:intergenic 30.0%
CATCTATCATCAATTGTAGT+TGG + chr1_3:70077332-70077351 Msa0137570:intron 30.0%
AAATTTCCTCTTATATCTGC+AGG + chr1_3:70077528-70077547 Msa0137570:intron 30.0%
AATTTCCTCTTATATCTGCA+GGG + chr1_3:70077529-70077548 Msa0137570:intron 30.0%
!! AGGGCTTTTTCTTAGAATTT+GGG + chr1_3:70077548-70077567 Msa0137570:intron 30.0%
!! TTTACAAGCCAGTTTTATAG+GGG - chr1_3:70077591-70077610 None:intergenic 30.0%
TATGAAAACGTGGTTATAAG+TGG - chr1_3:70077628-70077647 None:intergenic 30.0%
AAATATCCTTGTATATCTGC+AGG + chr1_3:70077721-70077740 Msa0137570:intron 30.0%
!!! CATACAAGCTAGTTTTATAG+GGG - chr1_3:70077784-70077803 None:intergenic 30.0%
!!! CCATACAAGCTAGTTTTATA+GGG - chr1_3:70077785-70077804 None:intergenic 30.0%
!!! ACCATACAAGCTAGTTTTAT+AGG - chr1_3:70077786-70077805 None:intergenic 30.0%
AAGAAACACATTAAGATGCA+TGG - chr1_3:70078013-70078032 None:intergenic 30.0%
! AAGCTACATTCTAGAAAACA+AGG - chr1_3:70078066-70078085 None:intergenic 30.0%
CAAACTACAGTGAAGTATAT+TGG - chr1_3:70078294-70078313 None:intergenic 30.0%
TACTTCTCAACTGTAGTATA+AGG + chr1_3:70078319-70078338 Msa0137570:intron 30.0%
! ATTTTCTCATATTACCTGCA+GGG + chr1_3:70078373-70078392 Msa0137570:intron 30.0%
!!! CTATTGGAATTGTTTTTGCT+GGG - chr1_3:70078442-70078461 None:intergenic 30.0%
!!! ACTATTGGAATTGTTTTTGC+TGG - chr1_3:70078443-70078462 None:intergenic 30.0%
TAGAAAGAATAGAAGCTTCA+AGG - chr1_3:70078528-70078547 None:intergenic 30.0%
! AGAGTTGATCTTAACTTTGT+AGG - chr1_3:70079088-70079107 None:intergenic 30.0%
ACAAAGTTAAGATCAACTCT+AGG + chr1_3:70079088-70079107 Msa0137570:three_prime_UTR 30.0%
ATATGACTGATGGTAAAACA+TGG - chr1_3:70079220-70079239 None:intergenic 30.0%
GAAAAAAAGAAGGTGATCTG+AGG + chr1_3:70074295-70074314 Msa0137570:five_prime_UTR 35.0%
CTTAATCAACTCTTTAGCAG+AGG + chr1_3:70074385-70074404 Msa0137570:CDS 35.0%
GAAATCGGGTAATTAAGGTT+AGG - chr1_3:70074449-70074468 None:intergenic 35.0%
AGAACCAATTGCTAGAATTC+GGG + chr1_3:70074707-70074726 Msa0137570:CDS 35.0%
ATTACCCGAATTCTAGCAAT+TGG - chr1_3:70074714-70074733 None:intergenic 35.0%
! GGGTAATCCTTCAAATCTTT+TGG + chr1_3:70074727-70074746 Msa0137570:intron 35.0%
! CATATAGTCAGTAAAAGTGC+AGG - chr1_3:70074770-70074789 None:intergenic 35.0%
!! ATGGGCTGCATATGAAATTT+TGG + chr1_3:70074845-70074864 Msa0137570:CDS 35.0%
GAACAGACATTTAAGAGCTA+TGG - chr1_3:70074929-70074948 None:intergenic 35.0%
GACATAGGCAGAATAGATTT+AGG + chr1_3:70075383-70075402 Msa0137570:intron 35.0%
GACTCATAAGATTCTACCAT+TGG + chr1_3:70075768-70075787 Msa0137570:intron 35.0%
GTTACTTACGAACTTAGTCT+TGG - chr1_3:70075930-70075949 None:intergenic 35.0%
ATGGTAGGATTGTTTCATGT+TGG - chr1_3:70076210-70076229 None:intergenic 35.0%
CATATATTCAATGTTGCAGC+TGG - chr1_3:70076538-70076557 None:intergenic 35.0%
TGAAGGCTTAGAGTTTGATT+AGG - chr1_3:70076775-70076794 None:intergenic 35.0%
GCCTTCATTCTCTACATAAT+AGG + chr1_3:70076788-70076807 Msa0137570:intron 35.0%
CCCTATTATGTAGAGAATGA+AGG - chr1_3:70076792-70076811 None:intergenic 35.0%
! GTATAATTTTTGCTGCTCCT+AGG + chr1_3:70076845-70076864 Msa0137570:CDS 35.0%
TTCTTGATGTGCAATAAGTC+TGG - chr1_3:70076883-70076902 None:intergenic 35.0%
AAACACCAAACAATTTGCAC+TGG + chr1_3:70077015-70077034 Msa0137570:intron 35.0%
ATACTCCAGTGCAAATTGTT+TGG - chr1_3:70077023-70077042 None:intergenic 35.0%
!! TTGAGTTTTATCTCTCCAGA+TGG - chr1_3:70077132-70077151 None:intergenic 35.0%
ATCTGGAGAGATAAAACTCA+AGG + chr1_3:70077131-70077150 Msa0137570:CDS 35.0%
GATAAAACTCAAGGTCTTGA+CGG + chr1_3:70077140-70077159 Msa0137570:CDS 35.0%
CAGAAGAATACAATCTAGCA+TGG + chr1_3:70077169-70077188 Msa0137570:CDS 35.0%
CTAAAACTGCAGCAGAATTT+AGG + chr1_3:70077199-70077218 Msa0137570:CDS 35.0%
ACTAATTCTTCCTTCACTGT+TGG + chr1_3:70077266-70077285 Msa0137570:intron 35.0%
!! CAGGGCTTTTTCTTAGAATT+TGG + chr1_3:70077547-70077566 Msa0137570:intron 35.0%
!! TTACAAGCCAGTTTTATAGG+GGG - chr1_3:70077590-70077609 None:intergenic 35.0%
AAAAGTCCTGCAGATATACA+AGG - chr1_3:70077730-70077749 None:intergenic 35.0%
! CCCTATAAAACTAGCTTGTA+TGG + chr1_3:70077782-70077801 Msa0137570:intron 35.0%
! TAAAACTAGCTTGTATGGTG+AGG + chr1_3:70077787-70077806 Msa0137570:intron 35.0%
ACTGGATGAGATTCAAAACT+TGG - chr1_3:70077831-70077850 None:intergenic 35.0%
! GCCATCTTAGAATTTGAGTT+AGG + chr1_3:70077954-70077973 Msa0137570:intron 35.0%
! GCCTAACTCAAATTCTAAGA+TGG - chr1_3:70077958-70077977 None:intergenic 35.0%
TTAGGCCTAACTTAACTCAT+TGG + chr1_3:70077972-70077991 Msa0137570:intron 35.0%
CATGATATTAAATGGCATCG+TGG - chr1_3:70078041-70078060 None:intergenic 35.0%
TGGACACGTAAATGTATCAA+CGG - chr1_3:70078274-70078293 None:intergenic 35.0%
! GATTTTCTCATATTACCTGC+AGG + chr1_3:70078372-70078391 Msa0137570:intron 35.0%
ATCCTCTGATATATTGGAGA+AGG + chr1_3:70078642-70078661 Msa0137570:CDS 35.0%
CTAAATCGATGAACTTTGCT+TGG + chr1_3:70078779-70078798 Msa0137570:three_prime_UTR 35.0%
ACATTGTTAAGACCTTACTG+CGG + chr1_3:70078817-70078836 Msa0137570:three_prime_UTR 35.0%
GTTGATCTTAACTTTGTAGG+TGG - chr1_3:70079085-70079104 None:intergenic 35.0%
! GAGAAATATTTTCTGAGCGA+AGG + chr1_3:70079110-70079129 Msa0137570:three_prime_UTR 35.0%
! CATACTGAATCGATTTAGCA+AGG - chr1_3:70079145-70079164 None:intergenic 35.0%
!!! CGTTTTTTCTACTCGTTGGT+GGG + chr1_3:70074408-70074427 Msa0137570:intron 40.0%
TCAACTCAAACAAATGCGGA+AGG + chr1_3:70074656-70074675 Msa0137570:CDS 40.0%
! GGAGATTTCCCAATTTTTGC+AGG + chr1_3:70074677-70074696 Msa0137570:CDS 40.0%
! ATTTCCCAATTTTTGCAGGC+TGG + chr1_3:70074681-70074700 Msa0137570:CDS 40.0%
TTGACCAGCCTGCAAAAATT+GGG - chr1_3:70074688-70074707 None:intergenic 40.0%
CAATTATAGGTACACGTGCA+AGG - chr1_3:70074890-70074909 None:intergenic 40.0%
TACAGAAAGTGATCACTCTG+TGG - chr1_3:70075039-70075058 None:intergenic 40.0%
TTGTGCAAGATTGTGAAGCA+TGG - chr1_3:70075065-70075084 None:intergenic 40.0%
TGTGCTAAAAAGTGAGGAAC+TGG + chr1_3:70075310-70075329 Msa0137570:intron 40.0%
ATCCACACCACAATGAAAAC+AGG + chr1_3:70075993-70076012 Msa0137570:intron 40.0%
TCCACACCACAATGAAAACA+GGG + chr1_3:70075994-70076013 Msa0137570:intron 40.0%
! AACTTCCCCTGTTTTCATTG+TGG - chr1_3:70076003-70076022 None:intergenic 40.0%
ACGCCTTGTGATAGAAAACA+AGG + chr1_3:70076026-70076045 Msa0137570:intron 40.0%
!!! CGACCTTGTTTTCTATCACA+AGG - chr1_3:70076032-70076051 None:intergenic 40.0%
GAAAACAAGGTCGAAGAGAA+CGG + chr1_3:70076039-70076058 Msa0137570:intron 40.0%
TTCATGCGTTTAAAAAGCCC+AGG + chr1_3:70076133-70076152 Msa0137570:intron 40.0%
TCATGCGTTTAAAAAGCCCA+GGG + chr1_3:70076134-70076153 Msa0137570:intron 40.0%
! TTGGCCATCCATTTTGCAAT+GGG - chr1_3:70076191-70076210 None:intergenic 40.0%
ATCATTGGAGATCGTTGTTG+TGG - chr1_3:70076248-70076267 None:intergenic 40.0%
TTGTCTGTGTATGTTGACGT+TGG + chr1_3:70076490-70076509 Msa0137570:intron 40.0%
TCTGGTATATCAGAACACCT+AGG - chr1_3:70076865-70076884 None:intergenic 40.0%
TTGCAATAATATCCGGTGAC+AGG - chr1_3:70077415-70077434 None:intergenic 40.0%
! ATCATGAGGCAAGGAGTATA+AGG - chr1_3:70077450-70077469 None:intergenic 40.0%
GGAAAAACTGACACATCATG+AGG - chr1_3:70077464-70077483 None:intergenic 40.0%
AAAAGCCCTGCAGATATAAG+AGG - chr1_3:70077537-70077556 None:intergenic 40.0%
!! TACAAGCCAGTTTTATAGGG+GGG - chr1_3:70077589-70077608 None:intergenic 40.0%
AGGACTGAGATATGAAAACG+TGG - chr1_3:70077638-70077657 None:intergenic 40.0%
ATAAGTGACTCTAGCTGTGT+GGG + chr1_3:70077688-70077707 Msa0137570:intron 40.0%
!! CTTAGAATTTGAGTTGGGTC+TGG + chr1_3:70077752-70077771 Msa0137570:intron 40.0%
CAGAATCAAGTAGTGAGAAC+GGG - chr1_3:70078195-70078214 None:intergenic 40.0%
CCAGAATCAAGTAGTGAGAA+CGG - chr1_3:70078196-70078215 None:intergenic 40.0%
TTCTCACTACTTGATTCTGG+TGG + chr1_3:70078196-70078215 Msa0137570:intron 40.0%
AGCCTTCTCCAATATATCAG+AGG - chr1_3:70078647-70078666 None:intergenic 40.0%
TCACTTGCACATAGTGACTT+TGG + chr1_3:70078721-70078740 Msa0137570:CDS 40.0%
TGACTTTGGATCATTGAAGC+TGG + chr1_3:70078735-70078754 Msa0137570:CDS 40.0%
TTTGGATCATTGAAGCTGGA+AGG + chr1_3:70078739-70078758 Msa0137570:CDS 40.0%
GAACTTTGCTTGGTATCTCA+AGG + chr1_3:70078789-70078808 Msa0137570:three_prime_UTR 40.0%
TTTGCTTGGTATCTCAAGGT+TGG + chr1_3:70078793-70078812 Msa0137570:three_prime_UTR 40.0%
GTACAGTAAATACCGCAGTA+AGG - chr1_3:70078832-70078851 None:intergenic 40.0%
CACCTTGTAAATCCTGACAT+GGG + chr1_3:70078972-70078991 Msa0137570:three_prime_UTR 40.0%
ACCTTGTAAATCCTGACATG+GGG + chr1_3:70078973-70078992 Msa0137570:three_prime_UTR 40.0%
TAAAGCCAAGTTCTCTCTGT+TGG + chr1_3:70079050-70079069 Msa0137570:three_prime_UTR 40.0%
!!! TGTTTTTTCGTGCCTACGAT+GGG + chr1_3:70079167-70079186 Msa0137570:three_prime_UTR 40.0%
! AGCGTGGTGATTTAGTTTCG+TGG + chr1_3:70074324-70074343 Msa0137570:five_prime_UTR 45.0%
!!! GAGGCGTTTTTTCTACTCGT+TGG + chr1_3:70074404-70074423 Msa0137570:CDS 45.0%
!!! GCGTTTTTTCTACTCGTTGG+TGG + chr1_3:70074407-70074426 Msa0137570:intron 45.0%
ACTTCATGCGTGAAATTGCG+AGG - chr1_3:70074614-70074633 None:intergenic 45.0%
CTTGACCAGCCTGCAAAAAT+TGG - chr1_3:70074689-70074708 None:intergenic 45.0%
! CTCTAAGGGTCTGCTTTGAT+TGG - chr1_3:70075668-70075687 None:intergenic 45.0%
AAAGCAGACCCTTAGAGATG+AGG + chr1_3:70075671-70075690 Msa0137570:intron 45.0%
! TACACTGGCCTCATCTCTAA+GGG - chr1_3:70075682-70075701 None:intergenic 45.0%
TCAAACACGAGGTCCTACAT+AGG + chr1_3:70075703-70075722 Msa0137570:intron 45.0%
AGGTCCTACATAGGATTGGA+AGG + chr1_3:70075712-70075731 Msa0137570:intron 45.0%
GGTCCTACATAGGATTGGAA+GGG + chr1_3:70075713-70075732 Msa0137570:intron 45.0%
GTCCTACATAGGATTGGAAG+GGG + chr1_3:70075714-70075733 Msa0137570:intron 45.0%
TCCTACATAGGATTGGAAGG+GGG + chr1_3:70075715-70075734 Msa0137570:intron 45.0%
CCACACCACAATGAAAACAG+GGG + chr1_3:70075995-70076014 Msa0137570:intron 45.0%
GAACAGGGCATAAAGGACAA+CGG + chr1_3:70076081-70076100 Msa0137570:intron 45.0%
AACAGGGCATAAAGGACAAC+GGG + chr1_3:70076082-70076101 Msa0137570:intron 45.0%
! AAGGGTTTTGCGAAAACCCT+GGG - chr1_3:70076153-70076172 None:intergenic 45.0%
AAGGCCCATTGCAAAATGGA+TGG + chr1_3:70076184-70076203 Msa0137570:intron 45.0%
! GTTGGCCATCCATTTTGCAA+TGG - chr1_3:70076192-70076211 None:intergenic 45.0%
TGTGATGCAGGCAAGATCAT+TGG - chr1_3:70076263-70076282 None:intergenic 45.0%
ATGGTAACATGCTGTGATGC+AGG - chr1_3:70076275-70076294 None:intergenic 45.0%
TGCATCACAGCATGTTACCA+TGG + chr1_3:70076274-70076293 Msa0137570:intron 45.0%
ACAGCATGTTACCATGGTCA+TGG + chr1_3:70076280-70076299 Msa0137570:intron 45.0%
TCAAAATCACGAGGTCACGT+AGG - chr1_3:70076324-70076343 None:intergenic 45.0%
CCAAGGTAGTCAAAATCACG+AGG - chr1_3:70076333-70076352 None:intergenic 45.0%
!!! CCTCGTGATTTTGACTACCT+TGG + chr1_3:70076330-70076349 Msa0137570:intron 45.0%
! GTTTTGCCTGTGTTGTACCT+CGG + chr1_3:70076430-70076449 Msa0137570:intron 45.0%
ATTCAATGTTGCAGCTGGAG+TGG - chr1_3:70076533-70076552 None:intergenic 45.0%
ACATAATAGGGAATGCCCGT+CGG + chr1_3:70076801-70076820 Msa0137570:intron 45.0%
TCTGAACTTCGTCCTGATTC+AGG + chr1_3:70076946-70076965 Msa0137570:CDS 45.0%
CTTTCAGTTAGTGCTCCATC+TGG + chr1_3:70077114-70077133 Msa0137570:CDS 45.0%
TTCATCCTTGATCCTGTCAC+CGG + chr1_3:70077400-70077419 Msa0137570:intron 45.0%
AATATCCGGTGACAGGATCA+AGG - chr1_3:70077408-70077427 None:intergenic 45.0%
AACTGACACATCATGAGGCA+AGG - chr1_3:70077459-70077478 None:intergenic 45.0%
GAGTCACTTATCAATGCTCG+TGG - chr1_3:70077679-70077698 None:intergenic 45.0%
GATAAGTGACTCTAGCTGTG+TGG + chr1_3:70077687-70077706 Msa0137570:intron 45.0%
GTGTGTTAAGAGTCTCACAC+TGG - chr1_3:70077849-70077868 None:intergenic 45.0%
!! AGATGTCCAGTTTGGTGTGA+GGG - chr1_3:70077874-70077893 None:intergenic 45.0%
CCGTTCTCACTACTTGATTC+TGG + chr1_3:70078193-70078212 Msa0137570:intron 45.0%
ACCTGTAGCATGTCAATCAC+TGG + chr1_3:70078229-70078248 Msa0137570:intron 45.0%
ACCAGTGATTGACATGCTAC+AGG - chr1_3:70078233-70078252 None:intergenic 45.0%
TTCTCATATTACCTGCAGGG+TGG + chr1_3:70078376-70078395 Msa0137570:intron 45.0%
ACGATTTGCAGAAGCTATGG+CGG - chr1_3:70078674-70078693 None:intergenic 45.0%
TGCACGATTTGCAGAAGCTA+TGG - chr1_3:70078677-70078696 None:intergenic 45.0%
GCACCTTGTAAATCCTGACA+TGG + chr1_3:70078971-70078990 Msa0137570:three_prime_UTR 45.0%
ACCCCATGTCAGGATTTACA+AGG - chr1_3:70078977-70078996 None:intergenic 45.0%
CAACGGAACTTTGATGTGCT+TGG + chr1_3:70079002-70079021 Msa0137570:three_prime_UTR 45.0%
TGCTACCAACAGAGAGAACT+TGG - chr1_3:70079058-70079077 None:intergenic 45.0%
!! GTTCTCTCTGTTGGTAGCAA+TGG + chr1_3:70079059-70079078 Msa0137570:three_prime_UTR 45.0%
!!! GTGTTTTTTCGTGCCTACGA+TGG + chr1_3:70079166-70079185 Msa0137570:three_prime_UTR 45.0%
TGATCTGAGGAAGCAAAGCG+TGG + chr1_3:70074308-70074327 Msa0137570:five_prime_UTR 50.0%
TGCGTGAAATTGCGAGGTTG+AGG - chr1_3:70074608-70074627 None:intergenic 50.0%
! CTACACTGGCCTCATCTCTA+AGG - chr1_3:70075683-70075702 None:intergenic 50.0%
GACCTCGTGTTTGACTACAC+TGG - chr1_3:70075697-70075716 None:intergenic 50.0%
CACGAGGTCCTACATAGGAT+TGG + chr1_3:70075708-70075727 Msa0137570:intron 50.0%
ACCCCCTTCCAATCCTATGT+AGG - chr1_3:70075719-70075738 None:intergenic 50.0%
! CCCCTGTTTTCATTGTGGTG+TGG - chr1_3:70075998-70076017 None:intergenic 50.0%
GAGGAGAGAACAGGGCATAA+AGG + chr1_3:70076074-70076093 Msa0137570:intron 50.0%
AACGGGAGAATGACGCAGTT+AGG + chr1_3:70076099-70076118 Msa0137570:intron 50.0%
! GAAGGGTTTTGCGAAAACCC+TGG - chr1_3:70076154-70076173 None:intergenic 50.0%
AAACCCTTCCCGTTTCAGCA+AGG + chr1_3:70076165-70076184 Msa0137570:intron 50.0%
TGCAATGGGCCTTGCTGAAA+CGG - chr1_3:70076177-70076196 None:intergenic 50.0%
CAGCAAGGCCCATTGCAAAA+TGG + chr1_3:70076180-70076199 Msa0137570:intron 50.0%
TCGAGATCGCGAGTTATGGT+AGG - chr1_3:70076225-70076244 None:intergenic 50.0%
TTACCATGGTCATGGATCGC+AGG + chr1_3:70076288-70076307 Msa0137570:intron 50.0%
CAACACAGGCAAAACAGCAC+AGG - chr1_3:70076425-70076444 None:intergenic 50.0%
TTTGCACCGAGGTACAACAC+AGG - chr1_3:70076439-70076458 None:intergenic 50.0%
! GTTGTACCTCGGTGCAAACA+TGG + chr1_3:70076441-70076460 Msa0137570:intron 50.0%
ATGGCTTCTCGCAATTCCGA+CGG - chr1_3:70076820-70076839 None:intergenic 50.0%
ATCAAGGATGAAGGTGGTCG+CGG - chr1_3:70077392-70077411 None:intergenic 50.0%
GACAGGATCAAGGATGAAGG+TGG - chr1_3:70077398-70077417 None:intergenic 50.0%
GGTGACAGGATCAAGGATGA+AGG - chr1_3:70077401-70077420 None:intergenic 50.0%
CCACAACTAGAGTCGCTTCT+CGG - chr1_3:70077494-70077513 None:intergenic 50.0%
AGCTCACCCCCCTATAAAAC+TGG + chr1_3:70077580-70077599 Msa0137570:intron 50.0%
GGTAGAGCTGTCACATCAAG+AGG - chr1_3:70077658-70077677 None:intergenic 50.0%
!! GATGTCCAGTTTGGTGTGAG+GGG - chr1_3:70077873-70077892 None:intergenic 50.0%
!! CAGATGTCCAGTTTGGTGTG+AGG - chr1_3:70077875-70077894 None:intergenic 50.0%
CTCACACCAAACTGGACATC+TGG + chr1_3:70077873-70077892 Msa0137570:intron 50.0%
!! GGAGCAAAGCAAGTTGGTGT+CGG + chr1_3:70078397-70078416 Msa0137570:CDS 50.0%
CTGACATGGGGTGAACACAA+CGG + chr1_3:70078985-70079004 Msa0137570:three_prime_UTR 50.0%
TCTTGCATTGAGCCCATCGT+AGG - chr1_3:70079182-70079201 None:intergenic 50.0%
GGCCAGTGTAGTCAAACACG+AGG + chr1_3:70075692-70075711 Msa0137570:intron 55.0%
GTCGAAGAGAACGGCGTAGA+GGG + chr1_3:70076048-70076067 Msa0137570:intron 55.0%
TCGAAGAGAACGGCGTAGAG+GGG + chr1_3:70076049-70076068 Msa0137570:intron 55.0%
GCAATGGGCCTTGCTGAAAC+GGG - chr1_3:70076176-70076195 None:intergenic 55.0%
GTGGTCGAGATCGCGAGTTA+TGG - chr1_3:70076229-70076248 None:intergenic 55.0%
GATCCTGCGATCCATGACCA+TGG - chr1_3:70076294-70076313 None:intergenic 55.0%
GACTACCTTGGATGAGCCGT+AGG + chr1_3:70076342-70076361 Msa0137570:intron 55.0%
TTGGTCCTACGGCTCATCCA+AGG - chr1_3:70076350-70076369 None:intergenic 55.0%
ATGGGTCCATGTTTGCACCG+AGG - chr1_3:70076450-70076469 None:intergenic 55.0%
TGGCTTCTCGCAATTCCGAC+GGG - chr1_3:70076819-70076838 None:intergenic 55.0%
GTGCGATTCACGCCTGAATC+AGG - chr1_3:70076961-70076980 None:intergenic 55.0%
TCAAGGATGAAGGTGGTCGC+GGG - chr1_3:70077391-70077410 None:intergenic 55.0%
CCGAGAAGCGACTCTAGTTG+TGG + chr1_3:70077491-70077510 Msa0137570:intron 55.0%
ACACACCCCTCACACCAAAC+TGG + chr1_3:70077865-70077884 Msa0137570:intron 55.0%
CAGGCTCCAGATGTCCAGTT+TGG - chr1_3:70077882-70077901 None:intergenic 55.0%
! CATCTGGAGCCTGATGCAAG+TGG + chr1_3:70077889-70077908 Msa0137570:intron 55.0%
GCTATCGAGCCACTTGCATC+AGG - chr1_3:70077901-70077920 None:intergenic 55.0%
GATGCAAGTGGCTCGATAGC+AGG + chr1_3:70077901-70077920 Msa0137570:intron 55.0%
CTCGATAGCAGGTGGTCTGA+TGG + chr1_3:70077912-70077931 Msa0137570:intron 55.0%
CAGGGTGGAGCAAAGCAAGT+TGG + chr1_3:70078391-70078410 Msa0137570:intron 55.0%
CGTTGTGTTCACCCCATGTC+AGG - chr1_3:70078987-70079006 None:intergenic 55.0%
GGTCGAAGAGAACGGCGTAG+AGG + chr1_3:70076047-70076066 Msa0137570:intron 60.0%
AAGAGAACGGCGTAGAGGGG+AGG + chr1_3:70076052-70076071 Msa0137570:intron 60.0%
AGAGGGGAGGAGGAGAGAAC+AGG + chr1_3:70076065-70076084 Msa0137570:intron 60.0%
GAGGGGAGGAGGAGAGAACA+GGG + chr1_3:70076066-70076085 Msa0137570:intron 60.0%
GGGCCTTGCTGAAACGGGAA+GGG - chr1_3:70076171-70076190 None:intergenic 60.0%
TGGGCCTTGCTGAAACGGGA+AGG - chr1_3:70076172-70076191 None:intergenic 60.0%
GCAAGTGGCTCGATAGCAGG+TGG + chr1_3:70077904-70077923 Msa0137570:intron 60.0%
CTTGCTTTGCTCCACCCTGC+AGG - chr1_3:70078390-70078409 None:intergenic 60.0%
AGAACGGCGTAGAGGGGAGG+AGG + chr1_3:70076055-70076074 Msa0137570:intron 65.0%
!! GAGTCGCTTCTCGGTGCTCG+TGG - chr1_3:70077485-70077504 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70074264 70079396 70074264 ID=Msa0137570;Name=Msa0137570
chr1_3 mRNA 70074264 70079396 70074264 ID=Msa0137570-mRNA-1;Parent=Msa0137570;Name=Msa0137570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=112|1|1|1|0.8|0.83|6|622|326
chr1_3 exon 70074264 70074425 70074264 ID=Msa0137570-mRNA-1:exon:24236;Parent=Msa0137570-mRNA-1
chr1_3 exon 70074596 70074728 70074596 ID=Msa0137570-mRNA-1:exon:24237;Parent=Msa0137570-mRNA-1
chr1_3 exon 70074816 70074919 70074816 ID=Msa0137570-mRNA-1:exon:24238;Parent=Msa0137570-mRNA-1
chr1_3 exon 70076810 70076981 70076810 ID=Msa0137570-mRNA-1:exon:24239;Parent=Msa0137570-mRNA-1
chr1_3 exon 70077102 70077242 70077102 ID=Msa0137570-mRNA-1:exon:24240;Parent=Msa0137570-mRNA-1
chr1_3 exon 70078394 70079396 70078394 ID=Msa0137570-mRNA-1:exon:24241;Parent=Msa0137570-mRNA-1
chr1_3 five_prime_UTR 70074264 70074375 70074264 ID=Msa0137570-mRNA-1:five_prime_utr;Parent=Msa0137570-mRNA-1
chr1_3 CDS 70074376 70074425 70074376 ID=Msa0137570-mRNA-1:cds;Parent=Msa0137570-mRNA-1
chr1_3 CDS 70074596 70074728 70074596 ID=Msa0137570-mRNA-1:cds;Parent=Msa0137570-mRNA-1
chr1_3 CDS 70074816 70074919 70074816 ID=Msa0137570-mRNA-1:cds;Parent=Msa0137570-mRNA-1
chr1_3 CDS 70076810 70076981 70076810 ID=Msa0137570-mRNA-1:cds;Parent=Msa0137570-mRNA-1
chr1_3 CDS 70077102 70077242 70077102 ID=Msa0137570-mRNA-1:cds;Parent=Msa0137570-mRNA-1
chr1_3 CDS 70078394 70078774 70078394 ID=Msa0137570-mRNA-1:cds;Parent=Msa0137570-mRNA-1
chr1_3 three_prime_UTR 70078775 70079396 70078775 ID=Msa0137570-mRNA-1:three_prime_utr;Parent=Msa0137570-mRNA-1
Gene Sequence

>Msa0137570

ATGTCACTTCTTAATCAACTCTTTAGCAGAGGCGTTTTTTCTACTCGTTGTAAAACATGCCTCAACCTCGCAATTTCACGCATGAAGTTGCTACAAAACAAGCGAGATGTTCAACTCAAACAAATGCGGAAGGAGATTTCCCAATTTTTGCAGGCTGGTCAAGAACCAATTGCTAGAATTCGGGTGGAGCATATCATTCGAGAACAAAATATATGGGCTGCATATGAAATTTTGGAGTTATTCTGCGAGTTCGTCCTTGCACGTGTACCTATAATTGAGAGTCAGAAGGAATGCCCGTCGGAATTGCGAGAAGCCATTGCAAGTATAATTTTTGCTGCTCCTAGGTGTTCTGATATACCAGACTTATTGCACATCAAGAACTTGTTTACTACTAAATATGGGAAAGAATTTGTCACTGCAATATCTGAACTTCGTCCTGATTCAGGCGTGAATCGCACTATAATTGAAAAACTTTCAGTTAGTGCTCCATCTGGAGAGATAAAACTCAAGGTCTTGACGGATATTGCAGAAGAATACAATCTAGCATGGGATTCTTCTAAAACTGCAGCAGAATTTAGGAAAAATCATGAAGATCTACTGGGTGGAGCAAAGCAAGTTGGTGTCGGAGCTGCACTTTCTCATGCTCCCAGCAAAAACAATTCCAATAGTTTTTCAGCTTGTAATACGGAACAGTCTATCAAATCTACACACGATAAACAACAATATGAACACCTTGAAGCTTCTATTCTTTCTAACAATAATTCTTGGTTGAACACTAATGAAATTGAGCAGTCACACAAAAATAACGACGTCCAATTCAATGATACTAAAACTGAGACTATATTTCAATCCTCTGATATATTGGAGAAGGCTCGAGCCGCCATAGCTTCTGCAAATCGTGCAACTGCAGCTGCTCGTGCTGCTGCTTCACTTGCACATAGTGACTTTGGATCATTGAAGCTGGAAGGCGAATCTTCATAG

Protein sequence

>Msa0137570

MSLLNQLFSRGVFSTRCKTCLNLAISRMKLLQNKRDVQLKQMRKEISQFLQAGQEPIARIRVEHIIREQNIWAAYEILELFCEFVLARVPIIESQKECPSELREAIASIIFAAPRCSDIPDLLHIKNLFTTKYGKEFVTAISELRPDSGVNRTIIEKLSVSAPSGEIKLKVLTDIAEEYNLAWDSSKTAAEFRKNHEDLLGGAKQVGVGAALSHAPSKNNSNSFSACNTEQSIKSTHDKQQYEHLEASILSNNNSWLNTNEIEQSHKNNDVQFNDTKTETIFQSSDILEKARAAIASANRATAAARAAASLAHSDFGSLKLEGESS*