Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259540 | KEH38287.1 | 88.652 | 141 | 16 | 0 | 63 | 203 | 2 | 142 | 1.77e-80 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259540 | A0A072V911 | 88.652 | 141 | 16 | 0 | 63 | 203 | 2 | 142 | 8.43e-81 | 246 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220740 | Msa0259540 | 0.810785 | 9.698890e-51 | -8.615850e-47 |
| Msa0259540 | Msa0536220 | 0.802891 | 4.523601e-49 | -8.615850e-47 |
| Msa0259540 | Msa0880140 | 0.808579 | 2.889773e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259540 | MtrunA17_Chr3g0124341 | 64.356 | 101 | 35 | 1 | 61 | 161 | 212 | 311 | 4.77e-38 | 137 |
| Msa0259540 | MtrunA17_Chr3g0124341 | 66.667 | 48 | 16 | 0 | 18 | 65 | 59 | 106 | 1.58e-11 | 62.4 |
| Msa0259540 | MtrunA17_Chr2g0323481 | 57.759 | 116 | 45 | 3 | 61 | 174 | 203 | 316 | 3.50e-37 | 134 |
| Msa0259540 | MtrunA17_Chr2g0323501 | 58.261 | 115 | 44 | 2 | 61 | 173 | 217 | 329 | 3.11e-36 | 132 |
| Msa0259540 | MtrunA17_Chr2g0323421 | 55.652 | 115 | 43 | 3 | 61 | 173 | 255 | 363 | 1.04e-33 | 125 |
| Msa0259540 | MtrunA17_Chr2g0323421 | 68.000 | 50 | 16 | 0 | 16 | 65 | 101 | 150 | 3.49e-13 | 67.4 |
| Msa0259540 | MtrunA17_Chr3g0092011 | 70.000 | 60 | 18 | 0 | 61 | 120 | 204 | 263 | 1.08e-21 | 89.7 |
| Msa0259540 | MtrunA17_Chr3g0092011 | 63.333 | 60 | 17 | 1 | 11 | 65 | 40 | 99 | 1.79e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAATCTTCATGTTCTT+TGG | 0.200803 | 2_2:+56575942 | None:intergenic |
| CAACATTTCTTCCCTCTTGC+TGG | 0.285829 | 2_2:-56577619 | Msa0259540:CDS |
| AAAACATTCTCAAGTCCTTT+TGG | 0.289190 | 2_2:+56576030 | None:intergenic |
| TTCTTTGGTGTGGAGAATAA+AGG | 0.307385 | 2_2:+56577564 | None:intergenic |
| GGCATCTCATTCAATTTGTC+AGG | 0.338907 | 2_2:+56575632 | None:intergenic |
| TCGTAACTTGTGCTTTCGTT+TGG | 0.345287 | 2_2:-56575798 | Msa0259540:CDS |
| CGTAACTTGTGCTTTCGTTT+GGG | 0.352319 | 2_2:-56575797 | Msa0259540:CDS |
| ACTTGGGATGCCTCGGGGTT+GGG | 0.373129 | 2_2:+56575697 | None:intergenic |
| AACTTGGGATGCCTCGGGGT+TGG | 0.403176 | 2_2:+56575696 | None:intergenic |
| AAAGGCAACAGAGTCTTCTT+TGG | 0.405446 | 2_2:+56577549 | None:intergenic |
| TCTTTGGTGTGGAGAATAAA+GGG | 0.411058 | 2_2:+56577565 | None:intergenic |
| TGAGTTTCAGCAATGAGTAT+AGG | 0.454643 | 2_2:+56575970 | None:intergenic |
| GAACTTGAGTATCATGAACT+TGG | 0.459286 | 2_2:+56575680 | None:intergenic |
| TCATGAACTTGGGATGCCTC+GGG | 0.469451 | 2_2:+56575691 | None:intergenic |
| ATCATGAACTTGGGATGCCT+CGG | 0.474117 | 2_2:+56575690 | None:intergenic |
| ACAAATTTAGATAGAAATTG+TGG | 0.488485 | 2_2:+56575820 | None:intergenic |
| TTTGGAAAAGAAGAAATTGA+GGG | 0.502317 | 2_2:-56575904 | Msa0259540:CDS |
| CAAATTTAGATAGAAATTGT+GGG | 0.516339 | 2_2:+56575821 | None:intergenic |
| TGGTTGGTTGAATAAGCAAA+AGG | 0.542580 | 2_2:+56577695 | None:intergenic |
| GAAATGAGATTTCCAGCAAG+AGG | 0.544753 | 2_2:+56577607 | None:intergenic |
| CAACAGAGTCTTCTTTGGTG+TGG | 0.564955 | 2_2:+56577554 | None:intergenic |
| AACTTGAGTATCATGAACTT+GGG | 0.592485 | 2_2:+56575681 | None:intergenic |
| AAATGAGATTTCCAGCAAGA+GGG | 0.599162 | 2_2:+56577608 | None:intergenic |
| GCATCTCATTCAATTTGTCA+GGG | 0.609461 | 2_2:+56575633 | None:intergenic |
| TTGGAAAAGAAGAAATTGAG+GGG | 0.626217 | 2_2:-56575903 | Msa0259540:CDS |
| ATACATAGATACGATGAGGA+TGG | 0.647221 | 2_2:-56575757 | Msa0259540:CDS |
| CATGAACTTGGGATGCCTCG+GGG | 0.663679 | 2_2:+56575692 | None:intergenic |
| AAATTTAGATAGAAATTGTG+GGG | 0.663875 | 2_2:+56575822 | None:intergenic |
| AGCAATACATAGATACGATG+AGG | 0.688058 | 2_2:-56575761 | Msa0259540:CDS |
| TAATCAGTTACCCAACCCCG+AGG | 0.751135 | 2_2:-56575707 | Msa0259540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTATTTGAGATTTTTT+AGG | + | chr2_2:56575890-56575909 | None:intergenic | 15.0% |
| !! | AATTAAAACATACATAAACT+GGG | + | chr2_2:56576438-56576457 | None:intergenic | 15.0% |
| !! | TTTATTAGAACAATTCAATT+AGG | + | chr2_2:56576700-56576719 | None:intergenic | 15.0% |
| !! | TAGATTTGATTAAGAAAATA+TGG | + | chr2_2:56576969-56576988 | None:intergenic | 15.0% |
| !!! | TAGTTTATTTGAGATTTTTT+AGG | + | chr2_2:56575890-56575909 | None:intergenic | 15.0% |
| !! | AATTAAAACATACATAAACT+GGG | + | chr2_2:56576438-56576457 | None:intergenic | 15.0% |
| !! | TTTATTAGAACAATTCAATT+AGG | + | chr2_2:56576700-56576719 | None:intergenic | 15.0% |
| !! | TAGATTTGATTAAGAAAATA+TGG | + | chr2_2:56576969-56576988 | None:intergenic | 15.0% |
| !! | GAATTAAAACATACATAAAC+TGG | + | chr2_2:56576439-56576458 | None:intergenic | 20.0% |
| !! | AATCATGTTTATATTTGATC+AGG | + | chr2_2:56576635-56576654 | None:intergenic | 20.0% |
| !! | TTGAATTGTTCTAATAAACA+TGG | - | chr2_2:56576702-56576721 | Msa0259540:intron | 20.0% |
| !! | AGAGAATCATTAGTAATAAT+AGG | - | chr2_2:56576886-56576905 | Msa0259540:intron | 20.0% |
| !! | AAAAATATATACTGGATCAA+TGG | - | chr2_2:56577487-56577506 | Msa0259540:intron | 20.0% |
| !! | AAATTTAGATAGAAATTGTG+GGG | + | chr2_2:56577544-56577563 | None:intergenic | 20.0% |
| !! | CAAATTTAGATAGAAATTGT+GGG | + | chr2_2:56577545-56577564 | None:intergenic | 20.0% |
| !! | ACAAATTTAGATAGAAATTG+TGG | + | chr2_2:56577546-56577565 | None:intergenic | 20.0% |
| !! | GAATTAAAACATACATAAAC+TGG | + | chr2_2:56576439-56576458 | None:intergenic | 20.0% |
| !! | AATCATGTTTATATTTGATC+AGG | + | chr2_2:56576635-56576654 | None:intergenic | 20.0% |
| !! | TTGAATTGTTCTAATAAACA+TGG | - | chr2_2:56576702-56576721 | Msa0259540:intron | 20.0% |
| !! | AGAGAATCATTAGTAATAAT+AGG | - | chr2_2:56576886-56576905 | Msa0259540:intron | 20.0% |
| !! | AAAAATATATACTGGATCAA+TGG | - | chr2_2:56577487-56577506 | Msa0259540:intron | 20.0% |
| !! | AAATTTAGATAGAAATTGTG+GGG | + | chr2_2:56577544-56577563 | None:intergenic | 20.0% |
| !! | CAAATTTAGATAGAAATTGT+GGG | + | chr2_2:56577545-56577564 | None:intergenic | 20.0% |
| !! | ACAAATTTAGATAGAAATTG+TGG | + | chr2_2:56577546-56577565 | None:intergenic | 20.0% |
| ! | GATGTTAAAAGCAACAAAAT+TGG | - | chr2_2:56576088-56576107 | Msa0259540:intron | 25.0% |
| ! | ACAGCAACATATGTTAATTA+GGG | + | chr2_2:56576543-56576562 | None:intergenic | 25.0% |
| !! | AGGATGTGTAAAGTTTATTT+TGG | + | chr2_2:56577046-56577065 | None:intergenic | 25.0% |
| ! | TTTACTACTTCGATAGTATT+TGG | - | chr2_2:56577124-56577143 | Msa0259540:intron | 25.0% |
| !! | ATTTTGCAATGAGAAAATCA+TGG | - | chr2_2:56577367-56577386 | Msa0259540:intron | 25.0% |
| ! | AACAAAATCTTCATGTTCTT+TGG | + | chr2_2:56577424-56577443 | None:intergenic | 25.0% |
| !! | AGAACATGAAGATTTTGTTA+AGG | - | chr2_2:56577425-56577444 | Msa0259540:intron | 25.0% |
| !! | GTTAAGGCAATTATTGTTTT+TGG | - | chr2_2:56577441-56577460 | Msa0259540:intron | 25.0% |
| !!! | TTTTGGAAAAGAAGAAATTG+AGG | - | chr2_2:56577458-56577477 | Msa0259540:intron | 25.0% |
| ! | TTTGGAAAAGAAGAAATTGA+GGG | - | chr2_2:56577459-56577478 | Msa0259540:intron | 25.0% |
| ! | GATGTTAAAAGCAACAAAAT+TGG | - | chr2_2:56576088-56576107 | Msa0259540:intron | 25.0% |
| ! | ACAGCAACATATGTTAATTA+GGG | + | chr2_2:56576543-56576562 | None:intergenic | 25.0% |
| !! | AGGATGTGTAAAGTTTATTT+TGG | + | chr2_2:56577046-56577065 | None:intergenic | 25.0% |
| ! | TTTACTACTTCGATAGTATT+TGG | - | chr2_2:56577124-56577143 | Msa0259540:intron | 25.0% |
| !! | ATTTTGCAATGAGAAAATCA+TGG | - | chr2_2:56577367-56577386 | Msa0259540:intron | 25.0% |
| ! | AACAAAATCTTCATGTTCTT+TGG | + | chr2_2:56577424-56577443 | None:intergenic | 25.0% |
| !! | AGAACATGAAGATTTTGTTA+AGG | - | chr2_2:56577425-56577444 | Msa0259540:intron | 25.0% |
| !! | GTTAAGGCAATTATTGTTTT+TGG | - | chr2_2:56577441-56577460 | Msa0259540:intron | 25.0% |
| !!! | TTTTGGAAAAGAAGAAATTG+AGG | - | chr2_2:56577458-56577477 | Msa0259540:intron | 25.0% |
| ! | TTTGGAAAAGAAGAAATTGA+GGG | - | chr2_2:56577459-56577478 | Msa0259540:intron | 25.0% |
| !!! | TGTTGTTTTGCAAAAATGGT+TGG | + | chr2_2:56575687-56575706 | None:intergenic | 30.0% |
| !!! | GAAGTGTTGTTTTGCAAAAA+TGG | + | chr2_2:56575691-56575710 | None:intergenic | 30.0% |
| !!! | AGAGAGATTTTTTTGAGAGA+TGG | + | chr2_2:56575713-56575732 | None:intergenic | 30.0% |
| !!! | GAGATTTTTTAGGTGTTGTT+TGG | + | chr2_2:56575880-56575899 | None:intergenic | 30.0% |
| ! | TGTGTGTTAATTTTCGAACA+AGG | + | chr2_2:56575917-56575936 | None:intergenic | 30.0% |
| ! | GCTGTCATTACGTAATTTTT+AGG | - | chr2_2:56576015-56576034 | Msa0259540:CDS | 30.0% |
| ! | CTAAGCATTATAAAGTATCC+AGG | - | chr2_2:56576064-56576083 | Msa0259540:intron | 30.0% |
| !! | AATGGCTTTGAAGGAAATTA+GGG | - | chr2_2:56576238-56576257 | Msa0259540:intron | 30.0% |
| AGACTAACTTCAGCTTAAAT+AGG | + | chr2_2:56576328-56576347 | None:intergenic | 30.0% | |
| ! | TGAAGTTAGTCTCAAACAAA+GGG | - | chr2_2:56576336-56576355 | Msa0259540:intron | 30.0% |
| AGCTAAATCTCTTAGAGATT+AGG | - | chr2_2:56576497-56576516 | Msa0259540:intron | 30.0% | |
| CACAGCAACATATGTTAATT+AGG | + | chr2_2:56576544-56576563 | None:intergenic | 30.0% | |
| CTAATAAACATGGTTAACCT+AGG | - | chr2_2:56576712-56576731 | Msa0259540:intron | 30.0% | |
| ! | ACTCGTTTGTTAGTGATATT+AGG | - | chr2_2:56576742-56576761 | Msa0259540:intron | 30.0% |
| TAACGTTCATAAAACCTTCA+AGG | - | chr2_2:56576766-56576785 | Msa0259540:intron | 30.0% | |
| AATAGGTGCAATAACCAATT+AGG | - | chr2_2:56576903-56576922 | Msa0259540:intron | 30.0% | |
| ATAGGTGCAATAACCAATTA+GGG | - | chr2_2:56576904-56576923 | Msa0259540:intron | 30.0% | |
| TTCAATCGCGTTATAGAAAT+AGG | + | chr2_2:56577066-56577085 | None:intergenic | 30.0% | |
| AAGTTAAAAACAGTCCTCTT+GGG | - | chr2_2:56577092-56577111 | Msa0259540:intron | 30.0% | |
| AAAACTTTCCTGTCAAAACA+AGG | + | chr2_2:56577307-56577326 | None:intergenic | 30.0% | |
| !! | TTTTGACAGGAAAGTTTTGA+GGG | - | chr2_2:56577309-56577328 | Msa0259540:intron | 30.0% |
| ! | AAAACATTCTCAAGTCCTTT+TGG | + | chr2_2:56577336-56577355 | None:intergenic | 30.0% |
| TTGGAAAAGAAGAAATTGAG+GGG | - | chr2_2:56577460-56577479 | Msa0259540:intron | 30.0% | |
| GGGGATGAAAAAATATATAC+TGG | - | chr2_2:56577479-56577498 | Msa0259540:intron | 30.0% | |
| GAAGAAAAATGACAACGATA+AGG | - | chr2_2:56577509-56577528 | Msa0259540:intron | 30.0% | |
| AACTTGAGTATCATGAACTT+GGG | + | chr2_2:56577685-56577704 | None:intergenic | 30.0% | |
| !!! | TGTTGTTTTGCAAAAATGGT+TGG | + | chr2_2:56575687-56575706 | None:intergenic | 30.0% |
| !!! | GAAGTGTTGTTTTGCAAAAA+TGG | + | chr2_2:56575691-56575710 | None:intergenic | 30.0% |
| !!! | AGAGAGATTTTTTTGAGAGA+TGG | + | chr2_2:56575713-56575732 | None:intergenic | 30.0% |
| !!! | GAGATTTTTTAGGTGTTGTT+TGG | + | chr2_2:56575880-56575899 | None:intergenic | 30.0% |
| ! | TGTGTGTTAATTTTCGAACA+AGG | + | chr2_2:56575917-56575936 | None:intergenic | 30.0% |
| ! | GCTGTCATTACGTAATTTTT+AGG | - | chr2_2:56576015-56576034 | Msa0259540:CDS | 30.0% |
| ! | CTAAGCATTATAAAGTATCC+AGG | - | chr2_2:56576064-56576083 | Msa0259540:intron | 30.0% |
| !! | AATGGCTTTGAAGGAAATTA+GGG | - | chr2_2:56576238-56576257 | Msa0259540:intron | 30.0% |
| AGACTAACTTCAGCTTAAAT+AGG | + | chr2_2:56576328-56576347 | None:intergenic | 30.0% | |
| ! | TGAAGTTAGTCTCAAACAAA+GGG | - | chr2_2:56576336-56576355 | Msa0259540:intron | 30.0% |
| AGCTAAATCTCTTAGAGATT+AGG | - | chr2_2:56576497-56576516 | Msa0259540:intron | 30.0% | |
| CACAGCAACATATGTTAATT+AGG | + | chr2_2:56576544-56576563 | None:intergenic | 30.0% | |
| CTAATAAACATGGTTAACCT+AGG | - | chr2_2:56576712-56576731 | Msa0259540:intron | 30.0% | |
| ! | ACTCGTTTGTTAGTGATATT+AGG | - | chr2_2:56576742-56576761 | Msa0259540:intron | 30.0% |
| TAACGTTCATAAAACCTTCA+AGG | - | chr2_2:56576766-56576785 | Msa0259540:intron | 30.0% | |
| AATAGGTGCAATAACCAATT+AGG | - | chr2_2:56576903-56576922 | Msa0259540:intron | 30.0% | |
| ATAGGTGCAATAACCAATTA+GGG | - | chr2_2:56576904-56576923 | Msa0259540:intron | 30.0% | |
| TTCAATCGCGTTATAGAAAT+AGG | + | chr2_2:56577066-56577085 | None:intergenic | 30.0% | |
| AAGTTAAAAACAGTCCTCTT+GGG | - | chr2_2:56577092-56577111 | Msa0259540:intron | 30.0% | |
| AAAACTTTCCTGTCAAAACA+AGG | + | chr2_2:56577307-56577326 | None:intergenic | 30.0% | |
| !! | TTTTGACAGGAAAGTTTTGA+GGG | - | chr2_2:56577309-56577328 | Msa0259540:intron | 30.0% |
| ! | AAAACATTCTCAAGTCCTTT+TGG | + | chr2_2:56577336-56577355 | None:intergenic | 30.0% |
| TTGGAAAAGAAGAAATTGAG+GGG | - | chr2_2:56577460-56577479 | Msa0259540:intron | 30.0% | |
| GGGGATGAAAAAATATATAC+TGG | - | chr2_2:56577479-56577498 | Msa0259540:intron | 30.0% | |
| GAAGAAAAATGACAACGATA+AGG | - | chr2_2:56577509-56577528 | Msa0259540:intron | 30.0% | |
| AACTTGAGTATCATGAACTT+GGG | + | chr2_2:56577685-56577704 | None:intergenic | 30.0% | |
| ! | TGGTTGGTTGAATAAGCAAA+AGG | + | chr2_2:56575671-56575690 | None:intergenic | 35.0% |
| AAATGAGATTTCCAGCAAGA+GGG | + | chr2_2:56575758-56575777 | None:intergenic | 35.0% | |
| ! | AGAATAAAGGGTTTTTGTGG+TGG | + | chr2_2:56575789-56575808 | None:intergenic | 35.0% |
| ! | TGGAGAATAAAGGGTTTTTG+TGG | + | chr2_2:56575792-56575811 | None:intergenic | 35.0% |
| ! | TCTTTGGTGTGGAGAATAAA+GGG | + | chr2_2:56575801-56575820 | None:intergenic | 35.0% |
| ! | TTCTTTGGTGTGGAGAATAA+AGG | + | chr2_2:56575802-56575821 | None:intergenic | 35.0% |
| TGAGGATTCAATGATGGTAA+AGG | + | chr2_2:56575835-56575854 | None:intergenic | 35.0% | |
| !!! | TTGTTGCTTTTAACATCTCC+TGG | + | chr2_2:56576085-56576104 | None:intergenic | 35.0% |
| AGCAACAAAATTGGAAGAAC+TGG | - | chr2_2:56576097-56576116 | Msa0259540:intron | 35.0% | |
| GGTGAAAATCGTAATACGAT+TGG | + | chr2_2:56576129-56576148 | None:intergenic | 35.0% | |
| TTCAAGAAATCGTATTGCGA+TGG | + | chr2_2:56576150-56576169 | None:intergenic | 35.0% | |
| TCGTGATACGATTTCAAGAA+TGG | - | chr2_2:56576220-56576239 | Msa0259540:intron | 35.0% | |
| !! | GATTTCAAGAATGGCTTTGA+AGG | - | chr2_2:56576229-56576248 | Msa0259540:intron | 35.0% |
| !! | GAATGGCTTTGAAGGAAATT+AGG | - | chr2_2:56576237-56576256 | Msa0259540:intron | 35.0% |
| AGGGTTTAATGTACTAATCG+TGG | - | chr2_2:56576257-56576276 | Msa0259540:intron | 35.0% | |
| ! | CTGAAGTTAGTCTCAAACAA+AGG | - | chr2_2:56576335-56576354 | Msa0259540:intron | 35.0% |
| ! | GAAGTTAGTCTCAAACAAAG+GGG | - | chr2_2:56576337-56576356 | Msa0259540:intron | 35.0% |
| ! | AACAAAGGGGATTACGATTT+TGG | - | chr2_2:56576350-56576369 | Msa0259540:intron | 35.0% |
| !! | GTGTAATTTTAACACCCAGA+AGG | - | chr2_2:56576382-56576401 | Msa0259540:intron | 35.0% |
| AAACATGGTTAACCTAGGAA+TGG | - | chr2_2:56576717-56576736 | Msa0259540:intron | 35.0% | |
| AAGGATTATTAGACCACCTA+AGG | - | chr2_2:56576785-56576804 | Msa0259540:intron | 35.0% | |
| ATTAGACCACCTAAGGAATT+AGG | - | chr2_2:56576792-56576811 | Msa0259540:intron | 35.0% | |
| TTAGACCACCTAAGGAATTA+GGG | - | chr2_2:56576793-56576812 | Msa0259540:intron | 35.0% | |
| CTAACTCAAGGGATTGATTA+GGG | - | chr2_2:56576838-56576857 | Msa0259540:intron | 35.0% | |
| TAGGTGCAATAACCAATTAG+GGG | - | chr2_2:56576905-56576924 | Msa0259540:intron | 35.0% | |
| !!! | GTTTATTTTGGTTTGCCACT+AGG | + | chr2_2:56577034-56577053 | None:intergenic | 35.0% |
| GAAGTTAAAAACAGTCCTCT+TGG | - | chr2_2:56577091-56577110 | Msa0259540:intron | 35.0% | |
| GTAAAAATATCGATCCCAAG+AGG | + | chr2_2:56577109-56577128 | None:intergenic | 35.0% | |
| AACTATTATCATCCATCACG+TGG | + | chr2_2:56577216-56577235 | None:intergenic | 35.0% | |
| ! | TCTTCGTCTTTTATCCATCA+AGG | - | chr2_2:56577253-56577272 | Msa0259540:intron | 35.0% |
| !! | GTTTTGACAGGAAAGTTTTG+AGG | - | chr2_2:56577308-56577327 | Msa0259540:intron | 35.0% |
| TGAGTTTCAGCAATGAGTAT+AGG | + | chr2_2:56577396-56577415 | None:intergenic | 35.0% | |
| AGCAATACATAGATACGATG+AGG | - | chr2_2:56577602-56577621 | Msa0259540:CDS | 35.0% | |
| ATACATAGATACGATGAGGA+TGG | - | chr2_2:56577606-56577625 | Msa0259540:CDS | 35.0% | |
| GAACTTGAGTATCATGAACT+TGG | + | chr2_2:56577686-56577705 | None:intergenic | 35.0% | |
| ! | TGGTTGGTTGAATAAGCAAA+AGG | + | chr2_2:56575671-56575690 | None:intergenic | 35.0% |
| AAATGAGATTTCCAGCAAGA+GGG | + | chr2_2:56575758-56575777 | None:intergenic | 35.0% | |
| ! | AGAATAAAGGGTTTTTGTGG+TGG | + | chr2_2:56575789-56575808 | None:intergenic | 35.0% |
| ! | TGGAGAATAAAGGGTTTTTG+TGG | + | chr2_2:56575792-56575811 | None:intergenic | 35.0% |
| ! | TCTTTGGTGTGGAGAATAAA+GGG | + | chr2_2:56575801-56575820 | None:intergenic | 35.0% |
| ! | TTCTTTGGTGTGGAGAATAA+AGG | + | chr2_2:56575802-56575821 | None:intergenic | 35.0% |
| TGAGGATTCAATGATGGTAA+AGG | + | chr2_2:56575835-56575854 | None:intergenic | 35.0% | |
| !!! | TTGTTGCTTTTAACATCTCC+TGG | + | chr2_2:56576085-56576104 | None:intergenic | 35.0% |
| AGCAACAAAATTGGAAGAAC+TGG | - | chr2_2:56576097-56576116 | Msa0259540:intron | 35.0% | |
| GGTGAAAATCGTAATACGAT+TGG | + | chr2_2:56576129-56576148 | None:intergenic | 35.0% | |
| TTCAAGAAATCGTATTGCGA+TGG | + | chr2_2:56576150-56576169 | None:intergenic | 35.0% | |
| TCGTGATACGATTTCAAGAA+TGG | - | chr2_2:56576220-56576239 | Msa0259540:intron | 35.0% | |
| !! | GATTTCAAGAATGGCTTTGA+AGG | - | chr2_2:56576229-56576248 | Msa0259540:intron | 35.0% |
| !! | GAATGGCTTTGAAGGAAATT+AGG | - | chr2_2:56576237-56576256 | Msa0259540:intron | 35.0% |
| AGGGTTTAATGTACTAATCG+TGG | - | chr2_2:56576257-56576276 | Msa0259540:intron | 35.0% | |
| ! | CTGAAGTTAGTCTCAAACAA+AGG | - | chr2_2:56576335-56576354 | Msa0259540:intron | 35.0% |
| ! | GAAGTTAGTCTCAAACAAAG+GGG | - | chr2_2:56576337-56576356 | Msa0259540:intron | 35.0% |
| ! | AACAAAGGGGATTACGATTT+TGG | - | chr2_2:56576350-56576369 | Msa0259540:intron | 35.0% |
| !! | GTGTAATTTTAACACCCAGA+AGG | - | chr2_2:56576382-56576401 | Msa0259540:intron | 35.0% |
| AAACATGGTTAACCTAGGAA+TGG | - | chr2_2:56576717-56576736 | Msa0259540:intron | 35.0% | |
| AAGGATTATTAGACCACCTA+AGG | - | chr2_2:56576785-56576804 | Msa0259540:intron | 35.0% | |
| ATTAGACCACCTAAGGAATT+AGG | - | chr2_2:56576792-56576811 | Msa0259540:intron | 35.0% | |
| TTAGACCACCTAAGGAATTA+GGG | - | chr2_2:56576793-56576812 | Msa0259540:intron | 35.0% | |
| CTAACTCAAGGGATTGATTA+GGG | - | chr2_2:56576838-56576857 | Msa0259540:intron | 35.0% | |
| TAGGTGCAATAACCAATTAG+GGG | - | chr2_2:56576905-56576924 | Msa0259540:intron | 35.0% | |
| !!! | GTTTATTTTGGTTTGCCACT+AGG | + | chr2_2:56577034-56577053 | None:intergenic | 35.0% |
| GAAGTTAAAAACAGTCCTCT+TGG | - | chr2_2:56577091-56577110 | Msa0259540:intron | 35.0% | |
| GTAAAAATATCGATCCCAAG+AGG | + | chr2_2:56577109-56577128 | None:intergenic | 35.0% | |
| AACTATTATCATCCATCACG+TGG | + | chr2_2:56577216-56577235 | None:intergenic | 35.0% | |
| ! | TCTTCGTCTTTTATCCATCA+AGG | - | chr2_2:56577253-56577272 | Msa0259540:intron | 35.0% |
| !! | GTTTTGACAGGAAAGTTTTG+AGG | - | chr2_2:56577308-56577327 | Msa0259540:intron | 35.0% |
| TGAGTTTCAGCAATGAGTAT+AGG | + | chr2_2:56577396-56577415 | None:intergenic | 35.0% | |
| AGCAATACATAGATACGATG+AGG | - | chr2_2:56577602-56577621 | Msa0259540:CDS | 35.0% | |
| ATACATAGATACGATGAGGA+TGG | - | chr2_2:56577606-56577625 | Msa0259540:CDS | 35.0% | |
| GAACTTGAGTATCATGAACT+TGG | + | chr2_2:56577686-56577705 | None:intergenic | 35.0% | |
| GAAATGAGATTTCCAGCAAG+AGG | + | chr2_2:56575759-56575778 | None:intergenic | 40.0% | |
| ! | ATAAAGGGTTTTTGTGGTGG+TGG | + | chr2_2:56575786-56575805 | None:intergenic | 40.0% |
| AAAGGCAACAGAGTCTTCTT+TGG | + | chr2_2:56575817-56575836 | None:intergenic | 40.0% | |
| ATCTGCTGAGGATTCAATGA+TGG | + | chr2_2:56575841-56575860 | None:intergenic | 40.0% | |
| CTTGCAAAGCTAACAATGGA+AGG | + | chr2_2:56575980-56575999 | None:intergenic | 40.0% | |
| ! | GTGACTTGCAAAGCTAACAA+TGG | + | chr2_2:56575984-56576003 | None:intergenic | 40.0% |
| !! | GTCAGAGAGCATGTTTTTGA+AGG | - | chr2_2:56576170-56576189 | Msa0259540:intron | 40.0% |
| TAGGTCTAAGTCGAAAGCTA+TGG | + | chr2_2:56576681-56576700 | None:intergenic | 40.0% | |
| ACAAACGAGTATCCATTCCT+AGG | + | chr2_2:56576732-56576751 | None:intergenic | 40.0% | |
| GGTGGTCTAATAATCCTTGA+AGG | + | chr2_2:56576783-56576802 | None:intergenic | 40.0% | |
| TAGACCACCTAAGGAATTAG+GGG | - | chr2_2:56576794-56576813 | Msa0259540:intron | 40.0% | |
| ACTACATCCCCTAATTCCTT+AGG | + | chr2_2:56576804-56576823 | None:intergenic | 40.0% | |
| AGGGGATGTAGTTTAAGAAG+AGG | - | chr2_2:56576812-56576831 | Msa0259540:intron | 40.0% | |
| GGGGATGTAGTTTAAGAAGA+GGG | - | chr2_2:56576813-56576832 | Msa0259540:intron | 40.0% | |
| CCTAATCAATCCCTTGAGTT+AGG | + | chr2_2:56576840-56576859 | None:intergenic | 40.0% | |
| CCTAACTCAAGGGATTGATT+AGG | - | chr2_2:56576837-56576856 | Msa0259540:intron | 40.0% | |
| ACCAATTAGGGGAAACATAG+AGG | - | chr2_2:56576916-56576935 | Msa0259540:intron | 40.0% | |
| TCCTCTATGTTTCCCCTAAT+TGG | + | chr2_2:56576920-56576939 | None:intergenic | 40.0% | |
| ATATGGAGAGAGATGAGATC+AGG | + | chr2_2:56576952-56576971 | None:intergenic | 40.0% | |
| AAACCAAATCTACTGCCTAG+TGG | - | chr2_2:56577016-56577035 | Msa0259540:intron | 40.0% | |
| AAAACTGTGTGATAGGCGTT+TGG | + | chr2_2:56577158-56577177 | None:intergenic | 40.0% | |
| TGATGCCAATGCAAATACCA+TGG | + | chr2_2:56577186-56577205 | None:intergenic | 40.0% | |
| CATCACATATTTCCACGTGA+TGG | - | chr2_2:56577201-56577220 | Msa0259540:intron | 40.0% | |
| ! | TCGTCTTTTATCCATCAAGG+AGG | - | chr2_2:56577256-56577275 | Msa0259540:intron | 40.0% |
| CAACTACATTTCCTCCTTGA+TGG | + | chr2_2:56577270-56577289 | None:intergenic | 40.0% | |
| !!! | AGTCACTACCTTGTTTTGAC+AGG | - | chr2_2:56577296-56577315 | Msa0259540:intron | 40.0% |
| !!! | GAAAGTTTTGAGGGACCAAA+AGG | - | chr2_2:56577318-56577337 | Msa0259540:intron | 40.0% |
| ! | TCGTAACTTGTGCTTTCGTT+TGG | - | chr2_2:56577565-56577584 | Msa0259540:CDS | 40.0% |
| ! | CGTAACTTGTGCTTTCGTTT+GGG | - | chr2_2:56577566-56577585 | Msa0259540:CDS | 40.0% |
| GAAATGAGATTTCCAGCAAG+AGG | + | chr2_2:56575759-56575778 | None:intergenic | 40.0% | |
| ! | ATAAAGGGTTTTTGTGGTGG+TGG | + | chr2_2:56575786-56575805 | None:intergenic | 40.0% |
| AAAGGCAACAGAGTCTTCTT+TGG | + | chr2_2:56575817-56575836 | None:intergenic | 40.0% | |
| ATCTGCTGAGGATTCAATGA+TGG | + | chr2_2:56575841-56575860 | None:intergenic | 40.0% | |
| CTTGCAAAGCTAACAATGGA+AGG | + | chr2_2:56575980-56575999 | None:intergenic | 40.0% | |
| ! | GTGACTTGCAAAGCTAACAA+TGG | + | chr2_2:56575984-56576003 | None:intergenic | 40.0% |
| !! | GTCAGAGAGCATGTTTTTGA+AGG | - | chr2_2:56576170-56576189 | Msa0259540:intron | 40.0% |
| TAGGTCTAAGTCGAAAGCTA+TGG | + | chr2_2:56576681-56576700 | None:intergenic | 40.0% | |
| ACAAACGAGTATCCATTCCT+AGG | + | chr2_2:56576732-56576751 | None:intergenic | 40.0% | |
| GGTGGTCTAATAATCCTTGA+AGG | + | chr2_2:56576783-56576802 | None:intergenic | 40.0% | |
| TAGACCACCTAAGGAATTAG+GGG | - | chr2_2:56576794-56576813 | Msa0259540:intron | 40.0% | |
| ACTACATCCCCTAATTCCTT+AGG | + | chr2_2:56576804-56576823 | None:intergenic | 40.0% | |
| AGGGGATGTAGTTTAAGAAG+AGG | - | chr2_2:56576812-56576831 | Msa0259540:intron | 40.0% | |
| GGGGATGTAGTTTAAGAAGA+GGG | - | chr2_2:56576813-56576832 | Msa0259540:intron | 40.0% | |
| CCTAATCAATCCCTTGAGTT+AGG | + | chr2_2:56576840-56576859 | None:intergenic | 40.0% | |
| CCTAACTCAAGGGATTGATT+AGG | - | chr2_2:56576837-56576856 | Msa0259540:intron | 40.0% | |
| ACCAATTAGGGGAAACATAG+AGG | - | chr2_2:56576916-56576935 | Msa0259540:intron | 40.0% | |
| TCCTCTATGTTTCCCCTAAT+TGG | + | chr2_2:56576920-56576939 | None:intergenic | 40.0% | |
| ATATGGAGAGAGATGAGATC+AGG | + | chr2_2:56576952-56576971 | None:intergenic | 40.0% | |
| AAACCAAATCTACTGCCTAG+TGG | - | chr2_2:56577016-56577035 | Msa0259540:intron | 40.0% | |
| AAAACTGTGTGATAGGCGTT+TGG | + | chr2_2:56577158-56577177 | None:intergenic | 40.0% | |
| TGATGCCAATGCAAATACCA+TGG | + | chr2_2:56577186-56577205 | None:intergenic | 40.0% | |
| CATCACATATTTCCACGTGA+TGG | - | chr2_2:56577201-56577220 | Msa0259540:intron | 40.0% | |
| ! | TCGTCTTTTATCCATCAAGG+AGG | - | chr2_2:56577256-56577275 | Msa0259540:intron | 40.0% |
| CAACTACATTTCCTCCTTGA+TGG | + | chr2_2:56577270-56577289 | None:intergenic | 40.0% | |
| !!! | AGTCACTACCTTGTTTTGAC+AGG | - | chr2_2:56577296-56577315 | Msa0259540:intron | 40.0% |
| !!! | GAAAGTTTTGAGGGACCAAA+AGG | - | chr2_2:56577318-56577337 | Msa0259540:intron | 40.0% |
| ! | TCGTAACTTGTGCTTTCGTT+TGG | - | chr2_2:56577565-56577584 | Msa0259540:CDS | 40.0% |
| ! | CGTAACTTGTGCTTTCGTTT+GGG | - | chr2_2:56577566-56577585 | Msa0259540:CDS | 40.0% |
| CAACATTTCTTCCCTCTTGC+TGG | - | chr2_2:56575744-56575763 | Msa0259540:CDS | 45.0% | |
| CAACAGAGTCTTCTTTGGTG+TGG | + | chr2_2:56575812-56575831 | None:intergenic | 45.0% | |
| GAGATGGTTGAAATCTGCTG+AGG | + | chr2_2:56575853-56575872 | None:intergenic | 45.0% | |
| ! | TGCCATCGTGGTACGATTTT+GGG | - | chr2_2:56576289-56576308 | Msa0259540:intron | 45.0% |
| ACATCCCCTAATTCCTTAGG+TGG | + | chr2_2:56576801-56576820 | None:intergenic | 45.0% | |
| AAGAAGAGGGTCCTAACTCA+AGG | - | chr2_2:56576826-56576845 | Msa0259540:intron | 45.0% | |
| AGAAGAGGGTCCTAACTCAA+GGG | - | chr2_2:56576827-56576846 | Msa0259540:intron | 45.0% | |
| TTGCCACTAGGCAGTAGATT+TGG | + | chr2_2:56577022-56577041 | None:intergenic | 45.0% | |
| CCAATGCAAATACCATGGTC+GGG | + | chr2_2:56577181-56577200 | None:intergenic | 45.0% | |
| GCCAATGCAAATACCATGGT+CGG | + | chr2_2:56577182-56577201 | None:intergenic | 45.0% | |
| ATCATGAACTTGGGATGCCT+CGG | + | chr2_2:56577676-56577695 | None:intergenic | 45.0% | |
| CAACATTTCTTCCCTCTTGC+TGG | - | chr2_2:56575744-56575763 | Msa0259540:CDS | 45.0% | |
| CAACAGAGTCTTCTTTGGTG+TGG | + | chr2_2:56575812-56575831 | None:intergenic | 45.0% | |
| GAGATGGTTGAAATCTGCTG+AGG | + | chr2_2:56575853-56575872 | None:intergenic | 45.0% | |
| ! | TGCCATCGTGGTACGATTTT+GGG | - | chr2_2:56576289-56576308 | Msa0259540:intron | 45.0% |
| ACATCCCCTAATTCCTTAGG+TGG | + | chr2_2:56576801-56576820 | None:intergenic | 45.0% | |
| AAGAAGAGGGTCCTAACTCA+AGG | - | chr2_2:56576826-56576845 | Msa0259540:intron | 45.0% | |
| AGAAGAGGGTCCTAACTCAA+GGG | - | chr2_2:56576827-56576846 | Msa0259540:intron | 45.0% | |
| TTGCCACTAGGCAGTAGATT+TGG | + | chr2_2:56577022-56577041 | None:intergenic | 45.0% | |
| CCAATGCAAATACCATGGTC+GGG | + | chr2_2:56577181-56577200 | None:intergenic | 45.0% | |
| GCCAATGCAAATACCATGGT+CGG | + | chr2_2:56577182-56577201 | None:intergenic | 45.0% | |
| ATCATGAACTTGGGATGCCT+CGG | + | chr2_2:56577676-56577695 | None:intergenic | 45.0% | |
| !! | GGTGTTGTTTGGTCGAGAGA+TGG | + | chr2_2:56575869-56575888 | None:intergenic | 50.0% |
| TGGTACGATTTGTGCCATCG+TGG | - | chr2_2:56576277-56576296 | Msa0259540:intron | 50.0% | |
| ! | GTGCCATCGTGGTACGATTT+TGG | - | chr2_2:56576288-56576307 | Msa0259540:intron | 50.0% |
| GGTCGGGAAAACTGTGTGAT+AGG | + | chr2_2:56577165-56577184 | None:intergenic | 50.0% | |
| ! | TCACACAGTTTTCCCGACCA+TGG | - | chr2_2:56577166-56577185 | Msa0259540:intron | 50.0% |
| CCCGACCATGGTATTTGCAT+TGG | - | chr2_2:56577178-56577197 | Msa0259540:intron | 50.0% | |
| TAATCAGTTACCCAACCCCG+AGG | - | chr2_2:56577656-56577675 | Msa0259540:CDS | 50.0% | |
| TCATGAACTTGGGATGCCTC+GGG | + | chr2_2:56577675-56577694 | None:intergenic | 50.0% | |
| !! | GGTGTTGTTTGGTCGAGAGA+TGG | + | chr2_2:56575869-56575888 | None:intergenic | 50.0% |
| TGGTACGATTTGTGCCATCG+TGG | - | chr2_2:56576277-56576296 | Msa0259540:intron | 50.0% | |
| ! | GTGCCATCGTGGTACGATTT+TGG | - | chr2_2:56576288-56576307 | Msa0259540:intron | 50.0% |
| GGTCGGGAAAACTGTGTGAT+AGG | + | chr2_2:56577165-56577184 | None:intergenic | 50.0% | |
| ! | TCACACAGTTTTCCCGACCA+TGG | - | chr2_2:56577166-56577185 | Msa0259540:intron | 50.0% |
| CCCGACCATGGTATTTGCAT+TGG | - | chr2_2:56577178-56577197 | Msa0259540:intron | 50.0% | |
| TAATCAGTTACCCAACCCCG+AGG | - | chr2_2:56577656-56577675 | Msa0259540:CDS | 50.0% | |
| TCATGAACTTGGGATGCCTC+GGG | + | chr2_2:56577675-56577694 | None:intergenic | 50.0% | |
| CGCCCAAAATCGTACCACGA+TGG | + | chr2_2:56576294-56576313 | None:intergenic | 55.0% | |
| TAACACCCAGAAGGCTGCAG+CGG | - | chr2_2:56576391-56576410 | Msa0259540:intron | 55.0% | |
| CATGAACTTGGGATGCCTCG+GGG | + | chr2_2:56577674-56577693 | None:intergenic | 55.0% | |
| CGCCCAAAATCGTACCACGA+TGG | + | chr2_2:56576294-56576313 | None:intergenic | 55.0% | |
| TAACACCCAGAAGGCTGCAG+CGG | - | chr2_2:56576391-56576410 | Msa0259540:intron | 55.0% | |
| CATGAACTTGGGATGCCTCG+GGG | + | chr2_2:56577674-56577693 | None:intergenic | 55.0% | |
| ACTTGGGATGCCTCGGGGTT+GGG | + | chr2_2:56577669-56577688 | None:intergenic | 60.0% | |
| AACTTGGGATGCCTCGGGGT+TGG | + | chr2_2:56577670-56577689 | None:intergenic | 60.0% | |
| ACTTGGGATGCCTCGGGGTT+GGG | + | chr2_2:56577669-56577688 | None:intergenic | 60.0% | |
| AACTTGGGATGCCTCGGGGT+TGG | + | chr2_2:56577670-56577689 | None:intergenic | 60.0% | |
| CCTCTCCGCTGCAGCCTTCT+GGG | + | chr2_2:56576399-56576418 | None:intergenic | 65.0% | |
| TCCTCTCCGCTGCAGCCTTC+TGG | + | chr2_2:56576400-56576419 | None:intergenic | 65.0% | |
| CCTCTCCGCTGCAGCCTTCT+GGG | + | chr2_2:56576399-56576418 | None:intergenic | 65.0% | |
| TCCTCTCCGCTGCAGCCTTC+TGG | + | chr2_2:56576400-56576419 | None:intergenic | 65.0% | |
| CCCAGAAGGCTGCAGCGGAG+AGG | - | chr2_2:56576396-56576415 | Msa0259540:intron | 70.0% | |
| CCCAGAAGGCTGCAGCGGAG+AGG | - | chr2_2:56576396-56576415 | Msa0259540:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 56575642 | 56577743 | 56575642 | ID=Msa0259540;Name=Msa0259540 |
| chr2_2 | mRNA | 56575642 | 56577743 | 56575642 | ID=Msa0259540-mRNA-1;Parent=Msa0259540;Name=Msa0259540-mRNA-1;_AED=0.21;_eAED=0.25;_QI=0|0|0|1|0|0.5|2|0|203 |
| chr2_2 | exon | 56577558 | 56577743 | 56577558 | ID=Msa0259540-mRNA-1:exon:17151;Parent=Msa0259540-mRNA-1 |
| chr2_2 | exon | 56575642 | 56576067 | 56575642 | ID=Msa0259540-mRNA-1:exon:17150;Parent=Msa0259540-mRNA-1 |
| chr2_2 | CDS | 56577558 | 56577743 | 56577558 | ID=Msa0259540-mRNA-1:cds;Parent=Msa0259540-mRNA-1 |
| chr2_2 | CDS | 56575642 | 56576067 | 56575642 | ID=Msa0259540-mRNA-1:cds;Parent=Msa0259540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
