AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0220740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220740 MtrunA17_Chr2g0324441 98.372 430 7 0 1 430 1 430 0.0 887
Msa0220740 MtrunA17_Chr4g0040121 70.534 431 123 3 1 430 1 428 0.0 632
Msa0220740 MtrunA17_Chr8g0334501 46.565 393 207 2 21 413 43 432 1.61e-132 389
Msa0220740 MtrunA17_Chr7g0245051 47.632 380 196 2 34 413 53 429 1.46e-131 387
Msa0220740 MtrunA17_Chr7g0245101 47.105 380 198 2 34 413 54 430 3.60e-130 383
Msa0220740 MtrunA17_Chr5g0404601 47.594 374 192 2 39 412 30 399 3.50e-129 380
Msa0220740 MtrunA17_Chr4g0020521 43.687 396 213 4 21 412 11 400 1.24e-125 370
Msa0220740 MtrunA17_Chr7g0271511 45.789 380 197 4 37 416 59 429 1.64e-123 365
Msa0220740 MtrunA17_Chr1g0193611 44.591 379 203 4 39 416 31 403 1.65e-121 359
Msa0220740 MtrunA17_Chr1g0193531 42.716 405 226 4 12 416 1 399 2.68e-121 358
Msa0220740 MtrunA17_Chr1g0193601 44.180 378 206 3 39 416 31 403 1.65e-119 354
Msa0220740 MtrunA17_Chr3g0141751 43.799 379 202 5 40 416 26 395 2.41e-119 353
Msa0220740 MtrunA17_Chr1g0193551 41.019 412 228 6 12 416 1 404 6.81e-116 345
Msa0220740 MtrunA17_Chr1g0193541 38.845 381 191 5 38 416 29 369 3.69e-91 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220740 AT2G20680.1 67.952 415 131 1 3 417 5 417 0.0 603
Msa0220740 AT4G28320.1 66.429 420 137 2 11 430 12 427 0.0 582
Msa0220740 AT5G01930.1 46.719 381 198 3 33 413 42 417 5.44e-128 377
Msa0220740 AT3G10900.1 42.356 399 224 5 17 413 6 400 6.88e-123 363
Msa0220740 AT5G66460.1 45.722 374 197 3 39 412 30 397 3.10e-122 362
Msa0220740 AT3G10890.1 42.520 381 212 5 39 417 30 405 4.84e-117 348
Msa0220740 AT1G02310.1 42.338 385 208 6 37 416 26 401 1.11e-110 332
Msa0220740 AT1G02310.2 42.338 385 208 6 37 416 46 421 1.81e-110 332
Msa0220740 AT3G30540.1 36.842 361 186 5 17 376 6 325 2.77e-85 264

Find 122 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAAAACTGGGGCTAATA+TGG 0.193950 2_1:-69181181 Msa0220740:CDS
GAAATCAATATCAGAGATTT+TGG 0.195187 2_1:+69177934 None:intergenic
AATCATTCCAAATTGAAATT+AGG 0.219616 2_1:+69177063 None:intergenic
GCAATATCCTAATTTCAATT+TGG 0.221596 2_1:-69177070 Msa0220740:three_prime_UTR
GAGGAGTATTCTGATGATTA+TGG 0.231278 2_1:-69177304 Msa0220740:CDS
AAGTCTGGATGCCCAATAAT+TGG 0.233607 2_1:+69177979 None:intergenic
TGACTGTCAACCCCAATTAT+TGG 0.235416 2_1:-69177991 Msa0220740:CDS
AGGAAAGTTGAATTATTTAT+AGG 0.245976 2_1:+69181777 None:intergenic
AAAAGAAGCAAAACCCAAAA+TGG 0.248452 2_1:+69181395 None:intergenic
TGAATGGGTGGAATTCTTAT+TGG 0.297092 2_1:-69181254 Msa0220740:CDS
GACTGTCAACCCCAATTATT+GGG 0.301516 2_1:-69177990 Msa0220740:CDS
GTAGTAATGAGAAAATAATT+AGG 0.307860 2_1:+69181757 None:intergenic
TCATTAAAGTTAGTGTCTTT+TGG 0.308669 2_1:-69181669 Msa0220740:five_prime_UTR
TAGTTTGGCAATTCTTAGTT+GGG 0.322364 2_1:-69177333 Msa0220740:CDS
GTCATTTCTATATTCAATTC+CGG 0.324364 2_1:+69178517 None:intergenic
TTAGTTTGGCAATTCTTAGT+TGG 0.337398 2_1:-69177334 Msa0220740:CDS
TTGAAATAACTACGGATTGA+TGG 0.340488 2_1:+69179676 None:intergenic
GTTCGTCAGATGCTGAAAAC+TGG 0.349630 2_1:-69181192 Msa0220740:CDS
GTGGAATTCTTATTGGTTGA+TGG 0.368784 2_1:-69181247 Msa0220740:CDS
GATTTAAGTGACTACACATT+GGG 0.373083 2_1:-69177100 Msa0220740:three_prime_UTR
CTGGAGCAGGTGCCTTAGTT+TGG 0.373407 2_1:-69177348 Msa0220740:CDS
AGTCTGGATGCCCAATAATT+GGG 0.376159 2_1:+69177980 None:intergenic
TTTGAAGAAGGGAGAGAAAT+GGG 0.376956 2_1:-69181330 Msa0220740:CDS
AAGCAAGGCAAAATGGAATA+AGG 0.383619 2_1:-69179816 Msa0220740:CDS
GTCAAATCCTTTGGGTCATT+CGG 0.385271 2_1:+69178010 None:intergenic
GAGATAATGTTTGCAGGAAA+TGG 0.389136 2_1:-69181429 Msa0220740:exon
ACTAATTTAGTGACCCTTTG+AGG 0.392458 2_1:-69181499 Msa0220740:five_prime_UTR
GGGTTGACAGTCAAATCCTT+TGG 0.393935 2_1:+69178001 None:intergenic
CATTCCCCACAGTCAGCATA+TGG 0.398844 2_1:+69178047 None:intergenic
CAGTATGGAATAGAGATATC+TGG 0.399999 2_1:-69177133 Msa0220740:three_prime_UTR
GGTCTGATACGGTGAAGTTC+TGG 0.401323 2_1:+69177431 None:intergenic
TATAAAACAGTCATGCAGAT+TGG 0.406700 2_1:-69177242 Msa0220740:CDS
GACTCACTGTTTGTAGAACT+TGG 0.410613 2_1:-69181158 Msa0220740:CDS
ATAATCCGTATTCGGAGAAT+AGG 0.412420 2_1:+69177464 None:intergenic
GTAAATAACTTGCAACCATA+TGG 0.414901 2_1:-69179778 Msa0220740:CDS
AGCAATGCTTACCATTGATC+CGG 0.418166 2_1:+69177893 None:intergenic
GGTTGACAGTCAAATCCTTT+GGG 0.421618 2_1:+69178002 None:intergenic
ATAGCAGAAGCAAGGCAAAA+TGG 0.422959 2_1:-69179823 Msa0220740:CDS
AATACAAATAGTTATCCATC+TGG 0.427787 2_1:-69176839 Msa0220740:three_prime_UTR
TGTTGTGAGATAATGTTTGC+AGG 0.428403 2_1:-69181435 Msa0220740:exon
ATAAAACAGTCATGCAGATT+GGG 0.432170 2_1:-69177241 Msa0220740:CDS
GAAGGGATGGATTAATCAAC+AGG 0.435221 2_1:-69177212 Msa0220740:CDS
GATATAATCAGACCCAAGTC+TGG 0.436740 2_1:+69177964 None:intergenic
AGAACTTGGGCTTTCAATGA+TGG 0.449779 2_1:-69181144 Msa0220740:CDS
TACTGACTCTTCCCACCATA+TGG 0.450859 2_1:+69179763 None:intergenic
TCAAATGGGCATGGCAAGAA+GGG 0.452269 2_1:-69179738 Msa0220740:CDS
AGGAGTATTCTGATGATTAT+GGG 0.452599 2_1:-69177303 Msa0220740:CDS
AATTATTGGGCATCCAGACT+TGG 0.454898 2_1:-69177977 Msa0220740:CDS
ATCATAGAAGAACGAATCAT+TGG 0.455387 2_1:+69179699 None:intergenic
CCGGTCCTATTCTCCGAATA+CGG 0.474856 2_1:-69177469 Msa0220740:CDS
TGTGTTGATCGACTTTCCGC+TGG 0.476825 2_1:+69177274 None:intergenic
GGAAGAGTCAGTATGTCAAA+TGG 0.484963 2_1:-69179753 Msa0220740:CDS
GACTTGGGTCTGATTATATC+CGG 0.485591 2_1:-69177961 Msa0220740:CDS
AACTGAAATTTGTCAACAAG+TGG 0.489345 2_1:-69177534 Msa0220740:CDS
TTCATATCTACCCGGATCAA+TGG 0.489590 2_1:-69177904 Msa0220740:intron
CTGAAAACTGGGGCTAATAT+GGG 0.491105 2_1:-69181180 Msa0220740:CDS
ACACAACTCAGTGAGATGAT+AGG 0.491985 2_1:+69176886 None:intergenic
GTCAAATGGGCATGGCAAGA+AGG 0.494866 2_1:-69179739 Msa0220740:CDS
TTCGTCAGATGCTGAAAACT+GGG 0.497421 2_1:-69181191 Msa0220740:CDS
ACTCACTGTTTGTAGAACTT+GGG 0.499364 2_1:-69181157 Msa0220740:CDS
AACTAAGAATTGCCAAACTA+AGG 0.499946 2_1:+69177336 None:intergenic
AAAGAAGCAAAACCCAAAAT+GGG 0.501043 2_1:+69181396 None:intergenic
CGTTGCATGACTGATCGTTC+CGG 0.503031 2_1:-69178458 Msa0220740:CDS
TAGATCTCTCTCTTAGAGCT+TGG 0.504009 2_1:+69181630 None:intergenic
CACCTCTGTTCATATCTACC+CGG 0.515950 2_1:-69177912 Msa0220740:CDS
TCTGCAAAGAGAAACAAGTC+TGG 0.516164 2_1:-69177367 Msa0220740:CDS
ATGCTTTCTCACATTGAAGA+TGG 0.517878 2_1:-69177511 Msa0220740:CDS
GCAAGTTATTTACTAAGCAA+AGG 0.522679 2_1:+69179788 None:intergenic
GGGACACAGTTTGTGTTGGA+TGG 0.524754 2_1:-69181291 Msa0220740:CDS
ATTATTGGGCATCCAGACTT+GGG 0.530301 2_1:-69177976 Msa0220740:CDS
ATGCTGACTGTGGGGAATGA+AGG 0.535452 2_1:-69178043 Msa0220740:CDS
TGTAATTCTTGAAATAACTA+CGG 0.536027 2_1:+69179668 None:intergenic
AAGAGAAACAAGTCTGGAGC+AGG 0.538273 2_1:-69177361 Msa0220740:CDS
ATCATCTCACTGAGTTGTGT+TGG 0.539441 2_1:-69176883 Msa0220740:three_prime_UTR
GAAGAGTCAGTATGTCAAAT+GGG 0.540890 2_1:-69179752 Msa0220740:CDS
TGATTTAAGTGACTACACAT+TGG 0.544263 2_1:-69177101 Msa0220740:three_prime_UTR
ACTTACTTGGAGAGTGTCGC+CGG 0.545828 2_1:+69178439 None:intergenic
GATTGGGCAAAGCGAAGGGA+TGG 0.552832 2_1:-69177225 Msa0220740:CDS
TAAGAATGAGGAAATGATTG+AGG 0.558383 2_1:+69181808 None:intergenic
AAAGAGTGAAGCAAATAAAG+AGG 0.558705 2_1:-69181992 None:intergenic
AATAACTTGCAACCATATGG+TGG 0.566863 2_1:-69179775 Msa0220740:CDS
ATGCAGATTGGGCAAAGCGA+AGG 0.567084 2_1:-69177230 Msa0220740:CDS
GTTTGGCAATTCTTAGTTGG+GGG 0.572306 2_1:-69177331 Msa0220740:CDS
TTATTTCAAGAATTACATCA+AGG 0.573575 2_1:-69179662 Msa0220740:intron
TTCTGCAGACTGTCTTGACA+AGG 0.576048 2_1:-69178553 Msa0220740:intron
GTCAGTATGTCAAATGGGCA+TGG 0.579900 2_1:-69179747 Msa0220740:CDS
AATGCTCTTCAAATTTCACC+TGG 0.579990 2_1:-69181114 Msa0220740:CDS
GAGTGAAGCAAATAAAGAGG+TGG 0.580198 2_1:-69181989 None:intergenic
GTGTTGATCGACTTTCCGCT+GGG 0.580201 2_1:+69177275 None:intergenic
TGGGCATGGCAAGAAGGGGT+AGG 0.584409 2_1:-69179733 Msa0220740:CDS
AAATGGGACACAGTTTGTGT+TGG 0.586472 2_1:-69181295 Msa0220740:CDS
ATAGAAGAACGAATCATTGG+AGG 0.587282 2_1:+69179702 None:intergenic
GCAATGCTTACCATTGATCC+GGG 0.587323 2_1:+69177894 None:intergenic
AAATTTGTACTGAATGAAGA+AGG 0.588806 2_1:+69181950 None:intergenic
GAGTGTATAGTGTGGTAGCA+TGG 0.589089 2_1:-69177036 Msa0220740:three_prime_UTR
TAGGTGAACAACTAAGAATG+AGG 0.589645 2_1:+69181796 None:intergenic
TGCAGATTGGGCAAAGCGAA+GGG 0.590290 2_1:-69177229 Msa0220740:CDS
AGTGAAGCAAATAAAGAGGT+GGG 0.592941 2_1:-69181988 None:intergenic
CCGTATTCGGAGAATAGGAC+CGG 0.594817 2_1:+69177469 None:intergenic
GGACACAGTTTGTGTTGGAT+GGG 0.598899 2_1:-69181290 Msa0220740:CDS
AGTTTGGCAATTCTTAGTTG+GGG 0.603862 2_1:-69177332 Msa0220740:CDS
GTCTGGATGCCCAATAATTG+GGG 0.607898 2_1:+69177981 None:intergenic
ATAACTTGCAACCATATGGT+GGG 0.615616 2_1:-69179774 Msa0220740:CDS
AGTAATTGAGTGTGAGTGTG+AGG 0.621002 2_1:-69181545 Msa0220740:five_prime_UTR
TTATGGTCCGAATGACCCAA+AGG 0.630396 2_1:-69178017 Msa0220740:CDS
ACTTGTTCATCAAAGTGACC+AGG 0.634282 2_1:+69181096 None:intergenic
GGAGTGGATAGAAGAAATGT+CGG 0.638950 2_1:-69178095 Msa0220740:CDS
AAGAACCATATGCTGACTGT+GGG 0.639037 2_1:-69178052 Msa0220740:CDS
CGACGAAGTACTGAAGAAGC+CGG 0.642356 2_1:-69177488 Msa0220740:CDS
TAGAAGTGAAACCGACGGTG+TGG 0.650208 2_1:+69181926 None:intergenic
ATGACTGAATTGAAACCAGA+TGG 0.650506 2_1:+69176824 None:intergenic
ATTACGTCATAGCAGAAGCA+AGG 0.656346 2_1:-69179831 Msa0220740:CDS
CAAATGGGCATGGCAAGAAG+GGG 0.658594 2_1:-69179737 Msa0220740:CDS
ATTTAAGTGACTACACATTG+GGG 0.670111 2_1:-69177099 Msa0220740:three_prime_UTR
TGAGTTAGAAGTGAAACCGA+CGG 0.677252 2_1:+69181921 None:intergenic
CAAGAACCATATGCTGACTG+TGG 0.692843 2_1:-69178053 Msa0220740:CDS
TCGTCAGATGCTGAAAACTG+GGG 0.713407 2_1:-69181190 Msa0220740:CDS
TGATTATGGGATCGTCCCAG+CGG 0.724033 2_1:-69177290 Msa0220740:CDS
AGAACCATATGCTGACTGTG+GGG 0.728545 2_1:-69178051 Msa0220740:CDS
ATCCGGGTAGATATGAACAG+AGG 0.729379 2_1:+69177910 None:intergenic
GATTAGTTGAGTGTATAGTG+TGG 0.740109 2_1:-69177044 Msa0220740:three_prime_UTR
GAACGATCAGTCATGCAACG+AGG 0.746364 2_1:+69178461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATCTATTAGAAAAA+TGG - chr2_1:69181797-69181816 Msa0220740:five_prime_UTR 10.0%
!! ATTATTATTATCCTCAAAAA+TGG + chr2_1:69176874-69176893 None:intergenic 15.0%
!! TTATAAACAATTATAATCAC+AGG + chr2_1:69177996-69178015 None:intergenic 15.0%
!! AAAATTAAGTACTTGAAATT+TGG + chr2_1:69178591-69178610 None:intergenic 15.0%
!! TTTCTATTCTTCAAAAATAA+TGG + chr2_1:69178860-69178879 None:intergenic 15.0%
!!! ATTTAATAATACTTTTGTAC+TGG - chr2_1:69179293-69179312 Msa0220740:intron 15.0%
!!! TAATTTTTTAAGTAGTTACT+TGG + chr2_1:69180350-69180369 None:intergenic 15.0%
!! TAGAAAATATGGATAAAATT+TGG + chr2_1:69180560-69180579 None:intergenic 15.0%
!! ACACTATAAAATAGAAAATA+TGG + chr2_1:69180571-69180590 None:intergenic 15.0%
!!! TTATAATATATTTTCCAACA+GGG + chr2_1:69180604-69180623 None:intergenic 15.0%
!!! AATTATATAACTTTTTCCAT+AGG - chr2_1:69181161-69181180 Msa0220740:CDS 15.0%
!! AGGAAAGTTGAATTATTTAT+AGG + chr2_1:69176975-69176994 None:intergenic 20.0%
!! GTAGTAATGAGAAAATAATT+AGG + chr2_1:69176995-69177014 None:intergenic 20.0%
!!! CTTCTCTTAATACATTTTTT+TGG - chr2_1:69177035-69177054 Msa0220740:three_prime_UTR 20.0%
!!! AAAAAACCAAACTTTTTTTC+TGG - chr2_1:69177167-69177186 Msa0220740:exon 20.0%
!!! AAAAACCAAACTTTTTTTCT+GGG - chr2_1:69177168-69177187 Msa0220740:exon 20.0%
!!! GTTTTTATTTACATGACTTT+TGG - chr2_1:69177380-69177399 Msa0220740:CDS 20.0%
!!! CATAAAAAACTAATTTGTGT+CGG + chr2_1:69177806-69177825 None:intergenic 20.0%
!!! TGACTTGTTTTTTGTTTTTT+GGG - chr2_1:69177844-69177863 Msa0220740:intron 20.0%
!! TGTTTATAATAATGGTATCT+TGG - chr2_1:69178007-69178026 Msa0220740:CDS 20.0%
!! AAGTAAAACATAAATCTCTA+AGG + chr2_1:69178630-69178649 None:intergenic 20.0%
!! TGTAATTCTTGAAATAACTA+CGG + chr2_1:69179084-69179103 None:intergenic 20.0%
!! TTATTTCAAGAATTACATCA+AGG - chr2_1:69179087-69179106 Msa0220740:intron 20.0%
!! AGTTATCATATGACAATTAA+AGG + chr2_1:69179269-69179288 None:intergenic 20.0%
!! TTATTATTCTTAAACTCAGT+AGG - chr2_1:69179324-69179343 Msa0220740:intron 20.0%
!!! CTTATAATATATTTTCCAAC+AGG + chr2_1:69180605-69180624 None:intergenic 20.0%
!! AATCATTCCAAATTGAAATT+AGG + chr2_1:69181689-69181708 None:intergenic 20.0%
! AAATTTGTACTGAATGAAGA+AGG + chr2_1:69176802-69176821 None:intergenic 25.0%
! TCAAAAATGGACAAAATTAG+CGG + chr2_1:69176861-69176880 None:intergenic 25.0%
!! TCATTAAAGTTAGTGTCTTT+TGG - chr2_1:69177080-69177099 Msa0220740:three_prime_UTR 25.0%
!!! CTTTTGATTTTTTCCTCAAA+GGG + chr2_1:69177266-69177285 None:intergenic 25.0%
!! CTTTGAGGAAAAAATCAAAA+GGG - chr2_1:69177265-69177284 Msa0220740:CDS 25.0%
!! TTTATTTACATGACTTTTGG+AGG - chr2_1:69177383-69177402 Msa0220740:CDS 25.0%
!! TTATTTACATGACTTTTGGA+GGG - chr2_1:69177384-69177403 Msa0220740:CDS 25.0%
!!! TTAAGGTTTAGTTTTGAAGA+AGG - chr2_1:69177407-69177426 Msa0220740:CDS 25.0%
!!! TAAGGTTTAGTTTTGAAGAA+GGG - chr2_1:69177408-69177427 Msa0220740:CDS 25.0%
! ACATAATCAGAACAAATCAT+AGG + chr2_1:69177747-69177766 None:intergenic 25.0%
! AACAACATGAAACAATGAAA+GGG + chr2_1:69177779-69177798 None:intergenic 25.0%
!!! GTGACTTGTTTTTTGTTTTT+TGG - chr2_1:69177843-69177862 Msa0220740:intron 25.0%
!!! GACTTGTTTTTTGTTTTTTG+GGG - chr2_1:69177845-69177864 Msa0220740:intron 25.0%
! TTATAATAATGGTATCTTGG+TGG - chr2_1:69178010-69178029 Msa0220740:CDS 25.0%
! TATAATAATGGTATCTTGGT+GGG - chr2_1:69178011-69178030 Msa0220740:CDS 25.0%
! AGATACCTAGTTTATTAGTT+TGG + chr2_1:69178047-69178066 None:intergenic 25.0%
!! AATAAACTAGGTATCTTTTG+TGG - chr2_1:69178051-69178070 Msa0220740:CDS 25.0%
! AAAATGGTTAAGTTCATGTT+TGG - chr2_1:69178145-69178164 Msa0220740:intron 25.0%
!! TACCTAGTAAACACAATTTT+AGG + chr2_1:69178431-69178450 None:intergenic 25.0%
!!! CAGATTTTTTTTTTATGACC+AGG + chr2_1:69178742-69178761 None:intergenic 25.0%
! AAAACTTTCTTTCCTTCAAT+CGG + chr2_1:69178780-69178799 None:intergenic 25.0%
! ATAGAAATTATGCTGAACTA+AGG - chr2_1:69178873-69178892 Msa0220740:intron 25.0%
!! CTGACATAATGACTTTAAAA+AGG + chr2_1:69179229-69179248 None:intergenic 25.0%
!! AAAACTTGTTTCCTTAAGTA+AGG + chr2_1:69179679-69179698 None:intergenic 25.0%
!! TTACTTAAGGAAACAAGTTT+TGG - chr2_1:69179678-69179697 Msa0220740:CDS 25.0%
! TCAATGAAGCTTGAAAAATA+AGG + chr2_1:69179896-69179915 None:intergenic 25.0%
! ATACATAAGAAAACAGAAAG+CGG + chr2_1:69179959-69179978 None:intergenic 25.0%
! GTCATTTCTATATTCAATTC+CGG + chr2_1:69180235-69180254 None:intergenic 25.0%
!! AATTTTGCAATATTCAGATG+TGG + chr2_1:69180500-69180519 None:intergenic 25.0%
!!! AATGTTGAATTTTTTTCTGC+AGG - chr2_1:69180633-69180652 Msa0220740:intron 25.0%
!! GAAATCAATATCAGAGATTT+TGG + chr2_1:69180818-69180837 None:intergenic 25.0%
! CAAAATATCCTTTATGAGTA+GGG - chr2_1:69180946-69180965 Msa0220740:intron 25.0%
! AGAAGTAAGAAAGGTTATAA+GGG - chr2_1:69181035-69181054 Msa0220740:intron 25.0%
!!! CTTTTTTGATAATCCGTATT+CGG + chr2_1:69181296-69181315 None:intergenic 25.0%
! TTTGTTAGCAAAAAAAGAAG+TGG - chr2_1:69181578-69181597 Msa0220740:five_prime_UTR 25.0%
! AAAAAAAGTTGACTACAGTA+TGG - chr2_1:69181601-69181620 Msa0220740:five_prime_UTR 25.0%
! GCAATATCCTAATTTCAATT+TGG - chr2_1:69181679-69181698 Msa0220740:five_prime_UTR 25.0%
! AATACAAATAGTTATCCATC+TGG - chr2_1:69181910-69181929 Msa0220740:five_prime_UTR 25.0%
!! GCTAATTTTGTCCATTTTTG+AGG - chr2_1:69176860-69176879 Msa0220740:three_prime_UTR 30.0%
TAAGAATGAGGAAATGATTG+AGG + chr2_1:69176944-69176963 None:intergenic 30.0%
!! ATCTAGACATTTTAGCCAAT+TGG - chr2_1:69177137-69177156 Msa0220740:three_prime_UTR 30.0%
!! TCTAGACATTTTAGCCAATT+GGG - chr2_1:69177138-69177157 Msa0220740:three_prime_UTR 30.0%
ACAAACCCAGAAAAAAAGTT+TGG + chr2_1:69177176-69177195 None:intergenic 30.0%
!!! AAACTTTTTTTCTGGGTTTG+TGG - chr2_1:69177175-69177194 Msa0220740:exon 30.0%
!!! CCTTTTGATTTTTTCCTCAA+AGG + chr2_1:69177267-69177286 None:intergenic 30.0%
! CCTTTGAGGAAAAAATCAAA+AGG - chr2_1:69177264-69177283 Msa0220740:CDS 30.0%
!! TGGATTGTTTTATCCCATTT+TGG - chr2_1:69177340-69177359 Msa0220740:CDS 30.0%
!! GGATTGTTTTATCCCATTTT+GGG - chr2_1:69177341-69177360 Msa0220740:CDS 30.0%
AAAGAAGCAAAACCCAAAAT+GGG + chr2_1:69177356-69177375 None:intergenic 30.0%
AAAAGAAGCAAAACCCAAAA+TGG + chr2_1:69177357-69177376 None:intergenic 30.0%
! GGAATGTGTTTTATGTGAAT+GGG - chr2_1:69177480-69177499 Msa0220740:CDS 30.0%
! CTTTGATGAACAAGTTTTTC+AGG - chr2_1:69177661-69177680 Msa0220740:intron 30.0%
CAACAACATGAAACAATGAA+AGG + chr2_1:69177780-69177799 None:intergenic 30.0%
AGTTATGTACTTGTTCCTTT+AGG - chr2_1:69178118-69178137 Msa0220740:intron 30.0%
GTTATGTACTTGTTCCTTTA+GGG - chr2_1:69178119-69178138 Msa0220740:intron 30.0%
! TTAACCATTTTCAACCCTAA+AGG + chr2_1:69178136-69178155 None:intergenic 30.0%
TAAGTGCATGTTTGAATTGA+CGG + chr2_1:69178280-69178299 None:intergenic 30.0%
AACATGCACTTAGTTAATTG+AGG - chr2_1:69178288-69178307 Msa0220740:intron 30.0%
CTCCTAAAATTGTGTTTACT+AGG - chr2_1:69178426-69178445 Msa0220740:intron 30.0%
AATTGTGTTTACTAGGTAGA+TGG - chr2_1:69178433-69178452 Msa0220740:intron 30.0%
TTATGACCAGGAATTGAAAT+CGG + chr2_1:69178730-69178749 None:intergenic 30.0%
AAACTTTCTTTCCTTCAATC+GGG + chr2_1:69178779-69178798 None:intergenic 30.0%
AATTATGCTGAACTAAGGAT+TGG - chr2_1:69178878-69178897 Msa0220740:intron 30.0%
GCAAGTTATTTACTAAGCAA+AGG + chr2_1:69178964-69178983 None:intergenic 30.0%
! GTAAATAACTTGCAACCATA+TGG - chr2_1:69178971-69178990 Msa0220740:intron 30.0%
ATCATAGAAGAACGAATCAT+TGG + chr2_1:69179053-69179072 None:intergenic 30.0%
! TTGAAATAACTACGGATTGA+TGG + chr2_1:69179076-69179095 None:intergenic 30.0%
! AATTAAAGGCATACAACATG+TGG + chr2_1:69179255-69179274 None:intergenic 30.0%
ACACAAGTCAAAGAAAACAT+AGG + chr2_1:69179350-69179369 None:intergenic 30.0%
TCTTCGAAAAGAAAAAGAGA+AGG + chr2_1:69179463-69179482 None:intergenic 30.0%
GAAGATTGAATCAAATAGAC+AGG - chr2_1:69179478-69179497 Msa0220740:intron 30.0%
!!! TGGTATCTTTTTTACCGTTT+AGG - chr2_1:69179524-69179543 Msa0220740:intron 30.0%
! ATTTTTCCTATCTACAAGAC+TGG - chr2_1:69179644-69179663 Msa0220740:intron 30.0%
ATTCTTTCATTAAGATGCCA+GGG + chr2_1:69179707-69179726 None:intergenic 30.0%
AATTCTTTCATTAAGATGCC+AGG + chr2_1:69179708-69179727 None:intergenic 30.0%
CCTTTATTGAGTAAAAGAAG+TGG + chr2_1:69179755-69179774 None:intergenic 30.0%
! CCACTTCTTTTACTCAATAA+AGG - chr2_1:69179752-69179771 Msa0220740:CDS 30.0%
AAAAGGAAGAAAGGTAAGAA+AGG + chr2_1:69179856-69179875 None:intergenic 30.0%
TTAAGAATGTGTGTGTGAAA+AGG + chr2_1:69179873-69179892 None:intergenic 30.0%
CCAAAAAGTTAAAGGAAACA+GGG + chr2_1:69179931-69179950 None:intergenic 30.0%
ACCAAAAAGTTAAAGGAAAC+AGG + chr2_1:69179932-69179951 None:intergenic 30.0%
!!! CTTGTATCTTTGGTTTTTCT+AGG - chr2_1:69180046-69180065 Msa0220740:intron 30.0%
TTAACAAAGAATAGCCTCAA+GGG + chr2_1:69180155-69180174 None:intergenic 30.0%
TTTAACAAAGAATAGCCTCA+AGG + chr2_1:69180156-69180175 None:intergenic 30.0%
ACAAGGAAAAATTCTTTCAC+CGG - chr2_1:69180213-69180232 Msa0220740:intron 30.0%
TCATTTATGCTCAAAGTCAT+TGG - chr2_1:69180915-69180934 Msa0220740:intron 30.0%
CATTTATGCTCAAAGTCATT+GGG - chr2_1:69180916-69180935 Msa0220740:intron 30.0%
!!! CTCATAAAGGATATTTTGGT+CGG + chr2_1:69180944-69180963 None:intergenic 30.0%
! CCTACTCATAAAGGATATTT+TGG + chr2_1:69180948-69180967 None:intergenic 30.0%
CCAAAATATCCTTTATGAGT+AGG - chr2_1:69180945-69180964 Msa0220740:intron 30.0%
! TACTTTTACCCTACTCATAA+AGG + chr2_1:69180957-69180976 None:intergenic 30.0%
! CATAGGTAATTACTCTGAAA+CGG - chr2_1:69180999-69181018 Msa0220740:intron 30.0%
CAGAAGTAAGAAAGGTTATA+AGG - chr2_1:69181034-69181053 Msa0220740:intron 30.0%
! TTCCCTTTTAGATTTGTCTT+CGG - chr2_1:69181119-69181138 Msa0220740:CDS 30.0%
AACTGAAATTTGTCAACAAG+TGG - chr2_1:69181215-69181234 Msa0220740:CDS 30.0%
! TCGTTTCATACATCTTTTCT+CGG + chr2_1:69181342-69181361 None:intergenic 30.0%
AACTAAGAATTGCCAAACTA+AGG + chr2_1:69181416-69181435 None:intergenic 30.0%
! TTAGTTTGGCAATTCTTAGT+TGG - chr2_1:69181415-69181434 Msa0220740:CDS 30.0%
TAGTTTGGCAATTCTTAGTT+GGG - chr2_1:69181416-69181435 Msa0220740:CDS 30.0%
!! AGGAGTATTCTGATGATTAT+GGG - chr2_1:69181446-69181465 Msa0220740:five_prime_UTR 30.0%
TATAAAACAGTCATGCAGAT+TGG - chr2_1:69181507-69181526 Msa0220740:five_prime_UTR 30.0%
ATAAAACAGTCATGCAGATT+GGG - chr2_1:69181508-69181527 Msa0220740:five_prime_UTR 30.0%
TGATTTAAGTGACTACACAT+TGG - chr2_1:69181648-69181667 Msa0220740:five_prime_UTR 30.0%
GATTTAAGTGACTACACATT+GGG - chr2_1:69181649-69181668 Msa0220740:five_prime_UTR 30.0%
ATTTAAGTGACTACACATTG+GGG - chr2_1:69181650-69181669 Msa0220740:five_prime_UTR 30.0%
! TGCTTCTTTTCACTTCTTTG+AGG - chr2_1:69176901-69176920 Msa0220740:three_prime_UTR 35.0%
TAGGTGAACAACTAAGAATG+AGG + chr2_1:69176956-69176975 None:intergenic 35.0%
!!! GGTTTTTTTGACAACCCAAT+TGG + chr2_1:69177155-69177174 None:intergenic 35.0%
ACTAATTTAGTGACCCTTTG+AGG - chr2_1:69177250-69177269 Msa0220740:CDS 35.0%
TGTTGTGAGATAATGTTTGC+AGG - chr2_1:69177314-69177333 Msa0220740:CDS 35.0%
GAGATAATGTTTGCAGGAAA+TGG - chr2_1:69177320-69177339 Msa0220740:CDS 35.0%
!! TTTGGGTTTTGCTTCTTTTG+TGG - chr2_1:69177358-69177377 Msa0220740:CDS 35.0%
!! TTTTGAAGAAGGGAGAGAAA+TGG - chr2_1:69177418-69177437 Msa0220740:CDS 35.0%
TTTGAAGAAGGGAGAGAAAT+GGG - chr2_1:69177419-69177438 Msa0220740:CDS 35.0%
!! ATGGGTTTTGTGATGAGAAA+TGG - chr2_1:69177437-69177456 Msa0220740:CDS 35.0%
!! TGGGTTTTGTGATGAGAAAT+GGG - chr2_1:69177438-69177457 Msa0220740:CDS 35.0%
! GGGAATGTGTTTTATGTGAA+TGG - chr2_1:69177479-69177498 Msa0220740:CDS 35.0%
! ATGTGTTTTATGTGAATGGG+TGG - chr2_1:69177483-69177502 Msa0220740:CDS 35.0%
TGAATGGGTGGAATTCTTAT+TGG - chr2_1:69177495-69177514 Msa0220740:CDS 35.0%
! GTGGAATTCTTATTGGTTGA+TGG - chr2_1:69177502-69177521 Msa0220740:CDS 35.0%
ACTCACTGTTTGTAGAACTT+GGG - chr2_1:69177592-69177611 Msa0220740:intron 35.0%
AATGCTCTTCAAATTTCACC+TGG - chr2_1:69177635-69177654 Msa0220740:intron 35.0%
! GTTTGTAGCTCTTGATTTTC+TGG - chr2_1:69177700-69177719 Msa0220740:intron 35.0%
! ACTCAGTCATGCACAATTTT+AGG + chr2_1:69177928-69177947 None:intergenic 35.0%
TGAGTGTGATTATGTCTCAT+AGG - chr2_1:69177943-69177962 Msa0220740:CDS 35.0%
AGGGACCAAACTAATAAACT+AGG - chr2_1:69178039-69178058 Msa0220740:CDS 35.0%
!! TGTTCCTTTAGGGTTGAAAA+TGG - chr2_1:69178129-69178148 Msa0220740:intron 35.0%
GGTAGAATACAGAGAAAAAG+TGG - chr2_1:69178338-69178357 Msa0220740:intron 35.0%
! TTTTGTCCATCATGAAACCT+GGG - chr2_1:69178499-69178518 Msa0220740:CDS 35.0%
TGGGAAATTGACCCAAAAAA+CGG - chr2_1:69178518-69178537 Msa0220740:CDS 35.0%
TTTCTGTTATACCCGATTGA+AGG - chr2_1:69178765-69178784 Msa0220740:intron 35.0%
AAGCAAGGCAAAATGGAATA+AGG - chr2_1:69178933-69178952 Msa0220740:intron 35.0%
! AATAACTTGCAACCATATGG+TGG - chr2_1:69178974-69178993 Msa0220740:intron 35.0%
! ATAACTTGCAACCATATGGT+GGG - chr2_1:69178975-69178994 Msa0220740:intron 35.0%
GAAGAGTCAGTATGTCAAAT+GGG - chr2_1:69178997-69179016 Msa0220740:intron 35.0%
ATAGAAGAACGAATCATTGG+AGG + chr2_1:69179050-69179069 None:intergenic 35.0%
CAACTCCTATGTCAGATAAA+TGG + chr2_1:69179430-69179449 None:intergenic 35.0%
! GAATCAAATAGACAGGCTTT+TGG - chr2_1:69179485-69179504 Msa0220740:intron 35.0%
GGTAAAAAAGATACCATCAC+CGG + chr2_1:69179520-69179539 None:intergenic 35.0%
TAGTCAGAGTCTAACGTTAT+CGG + chr2_1:69179567-69179586 None:intergenic 35.0%
TAGATAGGAAAAATAGCGTC+GGG + chr2_1:69179638-69179657 None:intergenic 35.0%
GTAGATAGGAAAAATAGCGT+CGG + chr2_1:69179639-69179658 None:intergenic 35.0%
CTGTGAAGCAAAGAATTAGA+TGG - chr2_1:69179820-69179839 Msa0220740:CDS 35.0%
!! CCCTGTTTCCTTTAACTTTT+TGG - chr2_1:69179928-69179947 Msa0220740:intron 35.0%
CGGTGAAACCAAAAAGTTAA+AGG + chr2_1:69179939-69179958 None:intergenic 35.0%
AATCAATTCCCAGCCAAAAA+TGG + chr2_1:69180262-69180281 None:intergenic 35.0%
GTGCAAATAAAGGACTTACT+TGG + chr2_1:69180326-69180345 None:intergenic 35.0%
GTTACTTGGAGTGCAAATAA+AGG + chr2_1:69180336-69180355 None:intergenic 35.0%
! TGAACTTTTCAATCTCCACA+TGG + chr2_1:69180420-69180439 None:intergenic 35.0%
GATCTCTAATGAATTTGTCC+TGG - chr2_1:69180463-69180482 Msa0220740:intron 35.0%
AGAGTCCTTCATATTGAACT+CGG + chr2_1:69180535-69180554 None:intergenic 35.0%
!!! TGAATTTTTTTCTGCAGGAG+TGG - chr2_1:69180638-69180657 Msa0220740:intron 35.0%
!!! TATCAGAGATTTTGGAGTTC+CGG + chr2_1:69180810-69180829 None:intergenic 35.0%
AGCATTGCTTGAACTCTATA+AGG - chr2_1:69180870-69180889 Msa0220740:intron 35.0%
! TAGGGTAAAAGTACGTGTTA+TGG - chr2_1:69180964-69180983 Msa0220740:intron 35.0%
! AGGGTAAAAGTACGTGTTAT+GGG - chr2_1:69180965-69180984 Msa0220740:intron 35.0%
! AAAAGTACGTGTTATGGGTA+TGG - chr2_1:69180970-69180989 Msa0220740:intron 35.0%
AAAGTACGTGTTATGGGTAT+GGG - chr2_1:69180971-69180990 Msa0220740:intron 35.0%
ATAACCTTTCTTACTTCTGC+AGG + chr2_1:69181033-69181052 None:intergenic 35.0%
TGCCGAAGACAAATCTAAAA+GGG + chr2_1:69181124-69181143 None:intergenic 35.0%
ATGCCGAAGACAAATCTAAA+AGG + chr2_1:69181125-69181144 None:intergenic 35.0%
! CTTTTTCCATAGGTTTCATG+AGG - chr2_1:69181171-69181190 Msa0220740:CDS 35.0%
TTTCATCCTCATGAAACCTA+TGG + chr2_1:69181180-69181199 None:intergenic 35.0%
ATGCTTTCTCACATTGAAGA+TGG - chr2_1:69181238-69181257 Msa0220740:CDS 35.0%
ATAATCCGTATTCGGAGAAT+AGG + chr2_1:69181288-69181307 None:intergenic 35.0%
AGTTTGGCAATTCTTAGTTG+GGG - chr2_1:69181417-69181436 Msa0220740:CDS 35.0%
!! GAGGAGTATTCTGATGATTA+TGG - chr2_1:69181445-69181464 Msa0220740:exon 35.0%
CAGTATGGAATAGAGATATC+TGG - chr2_1:69181616-69181635 Msa0220740:five_prime_UTR 35.0%
! GATTAGTTGAGTGTATAGTG+TGG - chr2_1:69181705-69181724 Msa0220740:five_prime_UTR 35.0%
ATGACTGAATTGAAACCAGA+TGG + chr2_1:69181928-69181947 None:intergenic 35.0%
! GTACAAATTTTCCACACCGT+CGG - chr2_1:69176812-69176831 Msa0220740:three_prime_UTR 40.0%
TGAGTTAGAAGTGAAACCGA+CGG + chr2_1:69176831-69176850 None:intergenic 40.0%
TAGATCTCTCTCTTAGAGCT+TGG + chr2_1:69177122-69177141 None:intergenic 40.0%
AGTAATTGAGTGTGAGTGTG+AGG - chr2_1:69177204-69177223 Msa0220740:CDS 40.0%
!! ACATGACTTTTGGAGGGTTA+AGG - chr2_1:69177390-69177409 Msa0220740:CDS 40.0%
AAATGGGACACAGTTTGTGT+TGG - chr2_1:69177454-69177473 Msa0220740:CDS 40.0%
!!! ATTCTGTCGATTTTTCGTCG+CGG - chr2_1:69177528-69177547 Msa0220740:CDS 40.0%
TTCGTCAGATGCTGAAAACT+GGG - chr2_1:69177558-69177577 Msa0220740:CDS 40.0%
CTGAAAACTGGGGCTAATAT+GGG - chr2_1:69177569-69177588 Msa0220740:CDS 40.0%
GACTCACTGTTTGTAGAACT+TGG - chr2_1:69177591-69177610 Msa0220740:intron 40.0%
AGAACTTGGGCTTTCAATGA+TGG - chr2_1:69177605-69177624 Msa0220740:intron 40.0%
ACTTGTTCATCAAAGTGACC+AGG + chr2_1:69177656-69177675 None:intergenic 40.0%
TTATGTGTGAGTGTGTGTTG+TGG - chr2_1:69177821-69177840 Msa0220740:intron 40.0%
! AAGAGTGCACAAACTGAGTA+GGG + chr2_1:69177903-69177922 None:intergenic 40.0%
! AAAGAGTGCACAAACTGAGT+AGG + chr2_1:69177904-69177923 None:intergenic 40.0%
CTCATAGGTCTTTGCAAAAG+TGG - chr2_1:69177958-69177977 Msa0220740:CDS 40.0%
ATAATGGTATCTTGGTGGGA+AGG - chr2_1:69178015-69178034 Msa0220740:CDS 40.0%
AGCATTTGCCAAAATCACAG+TGG + chr2_1:69178203-69178222 None:intergenic 40.0%
GTTTGAATTGACGGTGAGTT+TGG + chr2_1:69178271-69178290 None:intergenic 40.0%
ACTGAGTTACCATCGTTTCT+GGG - chr2_1:69178311-69178330 Msa0220740:intron 40.0%
GGATCTGACAAGCAATATGT+TGG - chr2_1:69178454-69178473 Msa0220740:CDS 40.0%
!! CAGGTTTCATGATGGACAAA+AGG + chr2_1:69178500-69178519 None:intergenic 40.0%
! CTTTTGTCCATCATGAAACC+TGG - chr2_1:69178498-69178517 Msa0220740:CDS 40.0%
CAATTTCCCAGGTTTCATGA+TGG + chr2_1:69178508-69178527 None:intergenic 40.0%
!!! GTTTTTTGGGTCAATTTCCC+AGG + chr2_1:69178519-69178538 None:intergenic 40.0%
ATTGACCCAAAAAACGGTGT+CGG - chr2_1:69178524-69178543 Msa0220740:CDS 40.0%
!!! AAACACCGACACCGTTTTTT+GGG + chr2_1:69178532-69178551 None:intergenic 40.0%
TAGTATGTCCTTTATGACCG+AGG - chr2_1:69178649-69178668 Msa0220740:intron 40.0%
!! TGTGGAAGTGTTGTGAACTT+CGG - chr2_1:69178699-69178718 Msa0220740:intron 40.0%
! ACTAAGGATTGGTATGTGAC+AGG - chr2_1:69178889-69178908 Msa0220740:intron 40.0%
ATTACGTCATAGCAGAAGCA+AGG - chr2_1:69178918-69178937 Msa0220740:intron 40.0%
ATAGCAGAAGCAAGGCAAAA+TGG - chr2_1:69178926-69178945 Msa0220740:intron 40.0%
GGAAGAGTCAGTATGTCAAA+TGG - chr2_1:69178996-69179015 Msa0220740:intron 40.0%
CCTATGTCAGATAAATGGTC+TGG + chr2_1:69179425-69179444 None:intergenic 40.0%
CCAGACCATTTATCTGACAT+AGG - chr2_1:69179422-69179441 Msa0220740:intron 40.0%
TAGACTCTGACTAATATCCG+AGG - chr2_1:69179574-69179593 Msa0220740:intron 40.0%
AGACTCTGACTAATATCCGA+GGG - chr2_1:69179575-69179594 Msa0220740:intron 40.0%
ACTAATATCCGAGGGTTGTT+GGG - chr2_1:69179583-69179602 Msa0220740:intron 40.0%
! CAAGTTCCAGTCTTGTAGAT+AGG + chr2_1:69179653-69179672 None:intergenic 40.0%
GGAACTTGAGACCTTACTTA+AGG - chr2_1:69179665-69179684 Msa0220740:CDS 40.0%
AATAAAGGAGTAGCGACGAA+GGG - chr2_1:69179767-69179786 Msa0220740:CDS 40.0%
! AAGGTAAGAAAGGTGTGCAT+TGG + chr2_1:69179846-69179865 None:intergenic 40.0%
GTGTGTGTGAAAAGGAAGAA+AGG + chr2_1:69179865-69179884 None:intergenic 40.0%
CCAAAGATACAAGCTTCATG+TGG + chr2_1:69180039-69180058 None:intergenic 40.0%
CCACATGAAGCTTGTATCTT+TGG - chr2_1:69180036-69180055 Msa0220740:intron 40.0%
! AGAAATGACCCCACCATTTT+TGG - chr2_1:69180246-69180265 Msa0220740:intron 40.0%
AATTCCCAGCCAAAAATGGT+GGG + chr2_1:69180258-69180277 None:intergenic 40.0%
!! GTGTAAGTTTTAGTCCCTGT+TGG - chr2_1:69180587-69180606 Msa0220740:intron 40.0%
GGAGTGGATAGAAGAAATGT+CGG - chr2_1:69180654-69180673 Msa0220740:intron 40.0%
! AAGAACCATATGCTGACTGT+GGG - chr2_1:69180697-69180716 Msa0220740:intron 40.0%
! GTGGGGAATGAAGGTTTTTA+TGG - chr2_1:69180715-69180734 Msa0220740:intron 40.0%
GTCAAATCCTTTGGGTCATT+CGG + chr2_1:69180742-69180761 None:intergenic 40.0%
GGTTGACAGTCAAATCCTTT+GGG + chr2_1:69180750-69180769 None:intergenic 40.0%
TGACTGTCAACCCCAATTAT+TGG - chr2_1:69180758-69180777 Msa0220740:intron 40.0%
GACTGTCAACCCCAATTATT+GGG - chr2_1:69180759-69180778 Msa0220740:intron 40.0%
AGTCTGGATGCCCAATAATT+GGG + chr2_1:69180772-69180791 None:intergenic 40.0%
AAGTCTGGATGCCCAATAAT+TGG + chr2_1:69180773-69180792 None:intergenic 40.0%
AATTATTGGGCATCCAGACT+TGG - chr2_1:69180772-69180791 Msa0220740:intron 40.0%
ATTATTGGGCATCCAGACTT+GGG - chr2_1:69180773-69180792 Msa0220740:intron 40.0%
GATATAATCAGACCCAAGTC+TGG + chr2_1:69180788-69180807 None:intergenic 40.0%
GACTTGGGTCTGATTATATC+CGG - chr2_1:69180788-69180807 Msa0220740:intron 40.0%
TTCATATCTACCCGGATCAA+TGG - chr2_1:69180845-69180864 Msa0220740:intron 40.0%
AGCAATGCTTACCATTGATC+CGG + chr2_1:69180859-69180878 None:intergenic 40.0%
ACAACCTGCAGAAGTAAGAA+AGG - chr2_1:69181026-69181045 Msa0220740:intron 40.0%
! CATCTTTTCTCGGTCTGATA+CGG + chr2_1:69181332-69181351 None:intergenic 40.0%
TCTGCAAAGAGAAACAAGTC+TGG - chr2_1:69181382-69181401 Msa0220740:CDS 40.0%
GTTTGGCAATTCTTAGTTGG+GGG - chr2_1:69181418-69181437 Msa0220740:CDS 40.0%
!! GAAGGGATGGATTAATCAAC+AGG - chr2_1:69181537-69181556 Msa0220740:five_prime_UTR 40.0%
ACACAACTCAGTGAGATGAT+AGG + chr2_1:69181866-69181885 None:intergenic 40.0%
ATCATCTCACTGAGTTGTGT+TGG - chr2_1:69181866-69181885 Msa0220740:five_prime_UTR 40.0%
GGACACAGTTTGTGTTGGAT+GGG - chr2_1:69177459-69177478 Msa0220740:CDS 45.0%
! CGATTTTTCGTCGCGGTTTA+AGG - chr2_1:69177535-69177554 Msa0220740:CDS 45.0%
GTTCGTCAGATGCTGAAAAC+TGG - chr2_1:69177557-69177576 Msa0220740:CDS 45.0%
TCGTCAGATGCTGAAAACTG+GGG - chr2_1:69177559-69177578 Msa0220740:CDS 45.0%
GCTGAAAACTGGGGCTAATA+TGG - chr2_1:69177568-69177587 Msa0220740:CDS 45.0%
CGGTGAGTTTGGCAAATTCA+TGG + chr2_1:69178260-69178279 None:intergenic 45.0%
GACTGAGTTACCATCGTTTC+TGG - chr2_1:69178310-69178329 Msa0220740:intron 45.0%
! TTACCATCGTTTCTGGGAAG+TGG - chr2_1:69178317-69178336 Msa0220740:intron 45.0%
!!! GAAACACCGACACCGTTTTT+TGG + chr2_1:69178533-69178552 None:intergenic 45.0%
!! GTGGAAGTGTTGTGAACTTC+GGG - chr2_1:69178700-69178719 Msa0220740:intron 45.0%
!! TGGAAGTGTTGTGAACTTCG+GGG - chr2_1:69178701-69178720 Msa0220740:intron 45.0%
GATTGGTATGTGACAGGCTT+TGG - chr2_1:69178895-69178914 Msa0220740:intron 45.0%
!! TACTGACTCTTCCCACCATA+TGG + chr2_1:69178989-69179008 None:intergenic 45.0%
GTCAGTATGTCAAATGGGCA+TGG - chr2_1:69179002-69179021 Msa0220740:intron 45.0%
TCAAATGGGCATGGCAAGAA+GGG - chr2_1:69179011-69179030 Msa0220740:intron 45.0%
GGGGAAAGGAGAAAGAGAAA+AGG + chr2_1:69179142-69179161 None:intergenic 45.0%
AAGAATGCCACTCCAACCAT+TGG + chr2_1:69179188-69179207 None:intergenic 45.0%
!! AGGCTTTTGGAAGTTGAGAC+CGG - chr2_1:69179498-69179517 Msa0220740:intron 45.0%
CCGGTGTTCTATGACCTAAA+CGG + chr2_1:69179541-69179560 None:intergenic 45.0%
CCGTTTAGGTCATAGAACAC+CGG - chr2_1:69179538-69179557 Msa0220740:intron 45.0%
AGTCTAACGTTATCGGAGAC+CGG + chr2_1:69179560-69179579 None:intergenic 45.0%
GACTAATATCCGAGGGTTGT+TGG - chr2_1:69179582-69179601 Msa0220740:intron 45.0%
!!! GAAACAAGTTTTGGTGTCCC+TGG - chr2_1:69179687-69179706 Msa0220740:CDS 45.0%
CAATAAAGGAGTAGCGACGA+AGG - chr2_1:69179766-69179785 Msa0220740:CDS 45.0%
CAAGCTTCATGTGGAAGTCA+TGG + chr2_1:69180030-69180049 None:intergenic 45.0%
TTCTGCAGACTGTCTTGACA+AGG - chr2_1:69180196-69180215 Msa0220740:intron 45.0%
ATTCCCAGCCAAAAATGGTG+GGG + chr2_1:69180257-69180276 None:intergenic 45.0%
CAATTCCCAGCCAAAAATGG+TGG + chr2_1:69180259-69180278 None:intergenic 45.0%
CTTCCTCCTTACTACATGCT+GGG - chr2_1:69180389-69180408 Msa0220740:intron 45.0%
GATCTTCCCAGCATGTAGTA+AGG + chr2_1:69180398-69180417 None:intergenic 45.0%
TGCGTCCGAGTTCAATATGA+AGG - chr2_1:69180527-69180546 Msa0220740:intron 45.0%
! CAAGAACCATATGCTGACTG+TGG - chr2_1:69180696-69180715 Msa0220740:intron 45.0%
! AGAACCATATGCTGACTGTG+GGG - chr2_1:69180698-69180717 Msa0220740:intron 45.0%
TTATGGTCCGAATGACCCAA+AGG - chr2_1:69180732-69180751 Msa0220740:intron 45.0%
GGGTTGACAGTCAAATCCTT+TGG + chr2_1:69180751-69180770 None:intergenic 45.0%
GTCTGGATGCCCAATAATTG+GGG + chr2_1:69180771-69180790 None:intergenic 45.0%
CACCTCTGTTCATATCTACC+CGG - chr2_1:69180837-69180856 Msa0220740:intron 45.0%
ATCCGGGTAGATATGAACAG+AGG + chr2_1:69180842-69180861 None:intergenic 45.0%
GCAATGCTTACCATTGATCC+GGG + chr2_1:69180858-69180877 None:intergenic 45.0%
! AAGAGAAACAAGTCTGGAGC+AGG - chr2_1:69181388-69181407 Msa0220740:CDS 45.0%
GCAATTCTTAGTTGGGGGAA+TGG - chr2_1:69181423-69181442 Msa0220740:CDS 45.0%
ATTCTTAGTTGGGGGAATGG+AGG - chr2_1:69181426-69181445 Msa0220740:CDS 45.0%
GAGTGTATAGTGTGGTAGCA+TGG - chr2_1:69181713-69181732 Msa0220740:five_prime_UTR 45.0%
!! ATTATAATTGTTTATAATAA+TGG - chr2_1:69177999-69178018 Msa0220740:CDS 5.0%
!!! GTAAAAATTATATATTTTTT+TGG - chr2_1:69181970-69181989 Msa0220740:five_prime_UTR 5.0%
TAGAAGTGAAACCGACGGTG+TGG + chr2_1:69176826-69176845 None:intergenic 50.0%
GGGACACAGTTTGTGTTGGA+TGG - chr2_1:69177458-69177477 Msa0220740:CDS 50.0%
!! ACAGCGTGCCACTGTGATTT+TGG - chr2_1:69178192-69178211 Msa0220740:intron 50.0%
CTACCACTTCCCAGAAACGA+TGG + chr2_1:69178323-69178342 None:intergenic 50.0%
TGGCAAGCGATCTCTCTCTA+TGG - chr2_1:69178358-69178377 Msa0220740:intron 50.0%
!! GGAAGTGTTGTGAACTTCGG+GGG - chr2_1:69178702-69178721 Msa0220740:intron 50.0%
!! GGGGTACCGATTTCAATTCC+TGG - chr2_1:69178721-69178740 Msa0220740:intron 50.0%
GTCAAATGGGCATGGCAAGA+AGG - chr2_1:69179010-69179029 Msa0220740:intron 50.0%
CAAATGGGCATGGCAAGAAG+GGG - chr2_1:69179012-69179031 Msa0220740:intron 50.0%
GGTAAAGAGAAAGGGGGGAA+AGG + chr2_1:69179156-69179175 None:intergenic 50.0%
ATGCCACTCCAACCATTGGA+GGG + chr2_1:69179184-69179203 None:intergenic 50.0%
AATGCCACTCCAACCATTGG+AGG + chr2_1:69179185-69179204 None:intergenic 50.0%
TTGGAAGTTGAGACCGGTGA+TGG - chr2_1:69179504-69179523 Msa0220740:intron 50.0%
GAGAGCTTACCCTCCTCTAT+GGG + chr2_1:69179616-69179635 None:intergenic 50.0%
CTCTATGTTTGCAGCCCTTG+AGG - chr2_1:69180138-69180157 Msa0220740:intron 50.0%
!!! ATGACCCCACCATTTTTGGC+TGG - chr2_1:69180250-69180269 Msa0220740:intron 50.0%
!!! TGACCCCACCATTTTTGGCT+GGG - chr2_1:69180251-69180270 Msa0220740:intron 50.0%
GAACGATCAGTCATGCAACG+AGG + chr2_1:69180291-69180310 None:intergenic 50.0%
CGTTGCATGACTGATCGTTC+CGG - chr2_1:69180291-69180310 Msa0220740:intron 50.0%
!! ACTTACTTGGAGAGTGTCGC+CGG + chr2_1:69180313-69180332 None:intergenic 50.0%
GCTTCCTCCTTACTACATGC+TGG - chr2_1:69180388-69180407 Msa0220740:intron 50.0%
CTTCCCAGCATGTAGTAAGG+AGG + chr2_1:69180395-69180414 None:intergenic 50.0%
ACATGCTGGGAAGATCCATG+TGG - chr2_1:69180402-69180421 Msa0220740:intron 50.0%
GATGTGGAGAGAAAACAGCC+AGG + chr2_1:69180484-69180503 None:intergenic 50.0%
CATTCCCCACAGTCAGCATA+TGG + chr2_1:69180705-69180724 None:intergenic 50.0%
! ATGCTGACTGTGGGGAATGA+AGG - chr2_1:69180706-69180725 Msa0220740:intron 50.0%
TATGGGTATGGGCACGACAT+AGG - chr2_1:69180982-69181001 Msa0220740:intron 50.0%
!! CGACGAAGTACTGAAGAAGC+CGG - chr2_1:69181261-69181280 Msa0220740:CDS 50.0%
CCGTATTCGGAGAATAGGAC+CGG + chr2_1:69181283-69181302 None:intergenic 50.0%
CCGGTCCTATTCTCCGAATA+CGG - chr2_1:69181280-69181299 Msa0220740:CDS 50.0%
GGTCTGATACGGTGAAGTTC+TGG + chr2_1:69181321-69181340 None:intergenic 50.0%
TGATTATGGGATCGTCCCAG+CGG - chr2_1:69181459-69181478 Msa0220740:five_prime_UTR 50.0%
! GTGTTGATCGACTTTCCGCT+GGG + chr2_1:69181477-69181496 None:intergenic 50.0%
! TGTGTTGATCGACTTTCCGC+TGG + chr2_1:69181478-69181497 None:intergenic 50.0%
ATGCAGATTGGGCAAAGCGA+AGG - chr2_1:69181519-69181538 Msa0220740:five_prime_UTR 50.0%
TGCAGATTGGGCAAAGCGAA+GGG - chr2_1:69181520-69181539 Msa0220740:five_prime_UTR 50.0%
TGGTATCTTGGTGGGAAGGC+AGG - chr2_1:69178019-69178038 Msa0220740:CDS 55.0%
GGTATCTTGGTGGGAAGGCA+GGG - chr2_1:69178020-69178039 Msa0220740:CDS 55.0%
GCGCTAGACCTCGGTCATAA+AGG + chr2_1:69178660-69178679 None:intergenic 55.0%
CAACCACTTGCGCTAGACCT+CGG + chr2_1:69178669-69178688 None:intergenic 55.0%
CGTGGGGTAAAGAGAAAGGG+GGG + chr2_1:69179161-69179180 None:intergenic 55.0%
GCGTGGGGTAAAGAGAAAGG+GGG + chr2_1:69179162-69179181 None:intergenic 55.0%
GGCGTGGGGTAAAGAGAAAG+GGG + chr2_1:69179163-69179182 None:intergenic 55.0%
GGGCGTGGGGTAAAGAGAAA+GGG + chr2_1:69179164-69179183 None:intergenic 55.0%
AGGGCGTGGGGTAAAGAGAA+AGG + chr2_1:69179165-69179184 None:intergenic 55.0%
ATCCGAGGGTTGTTGGGAAG+AGG - chr2_1:69179589-69179608 Msa0220740:intron 55.0%
GTCCTCTTCCCAACAACCCT+CGG + chr2_1:69179594-69179613 None:intergenic 55.0%
GTTGGGAAGAGGACCCATAG+AGG - chr2_1:69179600-69179619 Msa0220740:intron 55.0%
GGAAGAGGACCCATAGAGGA+GGG - chr2_1:69179604-69179623 Msa0220740:intron 55.0%
GGAGAGCTTACCCTCCTCTA+TGG + chr2_1:69179617-69179636 None:intergenic 55.0%
GCACTGCTGCGGTGATGATT+CGG + chr2_1:69179793-69179812 None:intergenic 55.0%
ACAGCACGATTGCACTGCTG+CGG + chr2_1:69179804-69179823 None:intergenic 55.0%
CTGGAGCAGGTGCCTTAGTT+TGG - chr2_1:69181401-69181420 Msa0220740:CDS 55.0%
GATTGGGCAAAGCGAAGGGA+TGG - chr2_1:69181524-69181543 Msa0220740:five_prime_UTR 55.0%
TGACCGAGGTCTAGCGCAAG+TGG - chr2_1:69178663-69178682 Msa0220740:intron 60.0%
CGAGGTCTAGCGCAAGTGGT+TGG - chr2_1:69178667-69178686 Msa0220740:intron 60.0%
! AGTGGTTGGTGCGCAGTGTG+TGG - chr2_1:69178681-69178700 Msa0220740:intron 60.0%
TGGGCATGGCAAGAAGGGGT+AGG - chr2_1:69179016-69179035 Msa0220740:intron 60.0%
CTTTACCCCACGCCCTCCAA+TGG - chr2_1:69179169-69179188 Msa0220740:intron 60.0%
! TCCAACCATTGGAGGGCGTG+GGG + chr2_1:69179177-69179196 None:intergenic 60.0%
! CTCCAACCATTGGAGGGCGT+GGG + chr2_1:69179178-69179197 None:intergenic 60.0%
ACTCCAACCATTGGAGGGCG+TGG + chr2_1:69179179-69179198 None:intergenic 60.0%
ACGCCCTCCAATGGTTGGAG+TGG - chr2_1:69179178-69179197 Msa0220740:intron 60.0%
GGGAAGAGGACCCATAGAGG+AGG - chr2_1:69179603-69179622 Msa0220740:intron 60.0%
ACCCCACGCCCTCCAATGGT+TGG - chr2_1:69179173-69179192 Msa0220740:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 69176772 69181999 69176772 ID=Msa0220740;Name=Msa0220740
chr2_1 mRNA 69176772 69181999 69176772 ID=Msa0220740-mRNA-1;Parent=Msa0220740;Name=Msa0220740-mRNA-1;_AED=0.13;_eAED=0.13;_QI=554|1|1|1|1|1|5|414|430
chr2_1 exon 69176772 69177588 69176772 ID=Msa0220740-mRNA-1:exon:19588;Parent=Msa0220740-mRNA-1
chr2_1 exon 69177905 69178116 69177905 ID=Msa0220740-mRNA-1:exon:19587;Parent=Msa0220740-mRNA-1
chr2_1 exon 69178445 69178567 69178445 ID=Msa0220740-mRNA-1:exon:19586;Parent=Msa0220740-mRNA-1
chr2_1 exon 69179663 69179860 69179663 ID=Msa0220740-mRNA-1:exon:19585;Parent=Msa0220740-mRNA-1
chr2_1 exon 69181089 69181999 69181089 ID=Msa0220740-mRNA-1:exon:19584;Parent=Msa0220740-mRNA-1
chr2_1 five_prime_UTR 69181446 69181999 69181446 ID=Msa0220740-mRNA-1:five_prime_utr;Parent=Msa0220740-mRNA-1
chr2_1 CDS 69181089 69181445 69181089 ID=Msa0220740-mRNA-1:cds;Parent=Msa0220740-mRNA-1
chr2_1 CDS 69179663 69179860 69179663 ID=Msa0220740-mRNA-1:cds;Parent=Msa0220740-mRNA-1
chr2_1 CDS 69178445 69178567 69178445 ID=Msa0220740-mRNA-1:cds;Parent=Msa0220740-mRNA-1
chr2_1 CDS 69177905 69178116 69177905 ID=Msa0220740-mRNA-1:cds;Parent=Msa0220740-mRNA-1
chr2_1 CDS 69177186 69177588 69177186 ID=Msa0220740-mRNA-1:cds;Parent=Msa0220740-mRNA-1
chr2_1 three_prime_UTR 69176772 69177185 69176772 ID=Msa0220740-mRNA-1:three_prime_utr;Parent=Msa0220740-mRNA-1
Gene Sequence

>Msa0220740

ATGTTTGCAGGAAATGGATTGTTTTATCCCATTTTGGGTTTTGCTTCTTTTGTGGTTTTTATTTACATGACTTTTGGAGGGTTAAGGTTTAGTTTTGAAGAAGGGAGAGAAATGGGTTTTGTGATGAGAAATGGGACACAGTTTGTGTTGGATGGGAATGTGTTTTATGTGAATGGGTGGAATTCTTATTGGTTGATGGATCATTCTGTCGATTTTTCGTCGCGGTTTAAGGTTCGTCAGATGCTGAAAACTGGGGCTAATATGGGACTCACTGTTTGTAGAACTTGGGCTTTCAATGATGGTCATTATAATGCTCTTCAAATTTCACCTGGTCACTTTGATGAACAAGTTTTTCAGGCTTTGGATTACGTCATAGCAGAAGCAAGGCAAAATGGAATAAGGCTGCTCCTTTGCTTAGTAAATAACTTGCAACCATATGGTGGGAAGAGTCAGTATGTCAAATGGGCATGGCAAGAAGGGGTAGGATTAAGCGCCTCCAATGATTCGTTCTTCTATGATCCATCAATCCGTAGTTATTTCAAGAATTACATCAAGACTGTCTTGACAAGGAAAAATTCTTTCACCGGAATTGAATATAGAAATGACCCCACCATTTTTGGCTGGGAATTGATTAATGAGCCTCGTTGCATGACTGATCGTTCCGGCGACACTCTCCAAGAGTGGATAGAAGAAATGTCGGCTTTTGTGAAATTGATTGACAAGAACCATATGCTGACTGTGGGGAATGAAGGTTTTTATGGTCCGAATGACCCAAAGGATTTGACTGTCAACCCCAATTATTGGGCATCCAGACTTGGGTCTGATTATATCCGGAACTCCAAAATCTCTGATATTGATTTCACCTCTGTTCATATCTACCCGGATCAATGGTTTCATGAGGATGAAAAAGCAATTGAAACTCAACTGAAATTTGTCAACAAGTGGATGCTTTCTCACATTGAAGATGGCGACGAAGTACTGAAGAAGCCGGTCCTATTCTCCGAATACGGATTATCAAAAAAGAACCAGAACTTCACCGTATCAGACCGAGAAAAGATGTATGAAACGATTTTAAACATCGTTTACAAATCTGCAAAGAGAAACAAGTCTGGAGCAGGTGCCTTAGTTTGGCAATTCTTAGTTGGGGGAATGGAGGAGTATTCTGATGATTATGGGATCGTCCCAGCGGAAAGTCGATCAACACAATCACTATTTATAAAACAGTCATGCAGATTGGGCAAAGCGAAGGGATGGATTAATCAACAGGATGTAAATTTCAAAGCACTTTGTTAG

Protein sequence

>Msa0220740

MFAGNGLFYPILGFASFVVFIYMTFGGLRFSFEEGREMGFVMRNGTQFVLDGNVFYVNGWNSYWLMDHSVDFSSRFKVRQMLKTGANMGLTVCRTWAFNDGHYNALQISPGHFDEQVFQALDYVIAEARQNGIRLLLCLVNNLQPYGGKSQYVKWAWQEGVGLSASNDSFFYDPSIRSYFKNYIKTVLTRKNSFTGIEYRNDPTIFGWELINEPRCMTDRSGDTLQEWIEEMSAFVKLIDKNHMLTVGNEGFYGPNDPKDLTVNPNYWASRLGSDYIRNSKISDIDFTSVHIYPDQWFHEDEKAIETQLKFVNKWMLSHIEDGDEVLKKPVLFSEYGLSKKNQNFTVSDREKMYETILNIVYKSAKRNKSGAGALVWQFLVGGMEEYSDDYGIVPAESRSTQSLFIKQSCRLGKAKGWINQQDVNFKALC*