AlfalfaGEDB | Msa0263450

M. sativa cultivar zhongmu-4 / Msa0263450

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
PFAM: PF02140.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263450	XP_039686760.1	74.619	591	45	4	1	486	238	828	0.0	852

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263450	sp\|Q9SCV4\|BGAL8_ARATH	52.357	594	165	9	1	480	263	852	0.0	563

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263450	G7IRQ0	74.619	591	45	4	1	486	253	843	0.0	851

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0263450	Msa0798860	0.800664	1.296069e-48	-8.615850e-47
Msa0263450	Msa1082500	0.803339	3.654239e-49	-8.615850e-47
Msa0263450	Msa1143270	0.802156	6.413294e-49	-8.615850e-47
Msa0263450	Msa1342900	0.803037	4.219944e-49	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263450	MtrunA17_Chr2g0326451	78.269	543	48	4	12	486	10	550	0.0	837
Msa0263450	MtrunA17_Chr2g0326481	71.453	585	58	5	1	480	253	833	0.0	783
Msa0263450	MtrunA17_Chr4g0029301	61.407	583	120	4	1	479	257	838	0.0	681
Msa0263450	MtrunA17_Chr2g0326521	81.212	330	25	2	165	480	1	307	0.0	540
Msa0263450	MtrunA17_Chr8g0372421	40.978	593	231	15	4	485	262	846	1.54e-134	409
Msa0263450	MtrunA17_Chr5g0404841	41.327	588	225	15	4	480	260	838	2.33e-133	405
Msa0263450	MtrunA17_Chr8g0342001	39.212	584	242	11	4	479	259	837	3.04e-128	392
Msa0263450	MtrunA17_Chr2g0330291	38.974	585	242	11	4	479	262	840	9.04e-123	378
Msa0263450	MtrunA17_Chr2g0301001	38.515	579	244	15	4	480	261	829	4.73e-109	342
Msa0263450	MtrunA17_Chr1g0152571	41.737	472	179	11	1	380	262	729	8.27e-105	328

Showing 1 to 10 of 29 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263450	AT2G28470.1	52.357	594	165	9	1	480	263	852	0.0	563
Msa0263450	AT2G28470.3	52.357	594	165	9	1	480	263	852	0.0	563
Msa0263450	AT2G28470.2	52.357	594	165	9	1	480	257	846	0.0	562
Msa0263450	AT2G28470.4	52.357	594	165	9	1	480	257	846	0.0	562
Msa0263450	AT4G36360.1	39.219	589	237	14	4	480	267	846	2.72e-132	404
Msa0263450	AT4G36360.2	39.219	589	236	15	4	480	267	845	1.21e-130	399
Msa0263450	AT2G28470.5	50.225	444	120	7	1	347	263	702	1.32e-129	392
Msa0263450	AT3G13750.1	38.671	587	243	13	4	480	268	847	8.51e-121	374
Msa0263450	AT5G20710.2	37.217	575	252	18	4	479	57	621	5.82e-105	326
Msa0263450	AT5G20710.1	37.217	575	252	18	4	479	262	826	4.13e-103	327

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Find 122 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGAGGCTTGGGTAAA+TGG	0.261772	2_2:+62853900	Msa0263450:CDS
AAATCAACGGTTGGTTCTTA+GGG	0.361145	2_2:-62853689	None:intergenic
AACACTTACAATGTCTGTGA+TGG	0.608501	2_2:-62854038	None:intergenic
AAGTTTCCGCATGTCCCTAG+TGG	0.652981	2_2:-62854409	None:intergenic
AATACAAGAGTGTTGTCGTT+TGG	0.430388	2_2:-62854172	None:intergenic
AATCGCAACTGGATTACTGC+CGG	0.573419	2_2:-62853859	None:intergenic
AATTCTTAGGGAGTCAAACC+GGG	0.592065	2_2:+62853192	Msa0263450:intron
ACAAACTTTGATGCTCCATC+CGG	0.506118	2_2:+62853840	Msa0263450:CDS
ACAACTTCTTGATCCAATGC+AGG	0.595751	2_2:-62854982	None:intergenic
ACACTCTTGATCTCTCCTCT+CGG	0.601381	2_2:+62853498	Msa0263450:CDS

Showing 1 to 10 of 122 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACATACCATACTCATCAATT+GGG	-	chr2_2:62851697-62851716	None:intergenic	30.0%
TATATGCTGCAGGAATTATT+AGG	+	chr2_2:62851880-62851899	Msa0263450:intron	30.0%
TCATCTTAAAGATTTGCACA+AGG	+	chr2_2:62851917-62851936	Msa0263450:CDS	30.0%
ATCTTGTAAGTTTCTTTCTC+TGG	+	chr2_2:62852111-62852130	Msa0263450:intron	30.0%
AAAACACCCTGTTTATAGAT+AGG	-	chr2_2:62852513-62852532	None:intergenic	30.0%
TTCAAAATGGAGTTGGATAA+AGG	+	chr2_2:62852671-62852690	Msa0263450:CDS	30.0%
AAGTACAGAATCATCTATCA+GGG	-	chr2_2:62852832-62852851	None:intergenic	30.0%
TTGAAACTCAAATGAAGTCA+AGG	+	chr2_2:62853014-62853033	Msa0263450:intron	30.0%
TTCAAACCTTTCAATATCAC+TGG	-	chr2_2:62853467-62853486	None:intergenic	30.0%
ATTACCTTGTACCAAATCAA+CGG	-	chr2_2:62853705-62853724	None:intergenic	30.0%

Showing 1 to 10 of 254 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	62851394	62855103	62851394	ID=Msa0263450;Name=Msa0263450
chr2_2	mRNA	62851394	62855103	62851394	ID=Msa0263450-mRNA-1;Parent=Msa0263450;Name=Msa0263450-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0.1\|0\|1\|0.9\|0.81\|11\|0\|486
chr2_2	exon	62851394	62851475	62851394	ID=Msa0263450-mRNA-1:exon:19439;Parent=Msa0263450-mRNA-1
chr2_2	exon	62851892	62852010	62851892	ID=Msa0263450-mRNA-1:exon:19440;Parent=Msa0263450-mRNA-1
chr2_2	exon	62852594	62852796	62852594	ID=Msa0263450-mRNA-1:exon:19441;Parent=Msa0263450-mRNA-1
chr2_2	exon	62852884	62852978	62852884	ID=Msa0263450-mRNA-1:exon:19442;Parent=Msa0263450-mRNA-1
chr2_2	exon	62853201	62853310	62853201	ID=Msa0263450-mRNA-1:exon:19443;Parent=Msa0263450-mRNA-1
chr2_2	exon	62853419	62853535	62853419	ID=Msa0263450-mRNA-1:exon:19444;Parent=Msa0263450-mRNA-1
chr2_2	exon	62853618	62853719	62853618	ID=Msa0263450-mRNA-1:exon:19445;Parent=Msa0263450-mRNA-1
chr2_2	exon	62853840	62854051	62853840	ID=Msa0263450-mRNA-1:exon:19446;Parent=Msa0263450-mRNA-1
chr2_2	exon	62854144	62854330	62854144	ID=Msa0263450-mRNA-1:exon:19447;Parent=Msa0263450-mRNA-1
chr2_2	exon	62854373	62854480	62854373	ID=Msa0263450-mRNA-1:exon:19448;Parent=Msa0263450-mRNA-1
chr2_2	exon	62854981	62855103	62854981	ID=Msa0263450-mRNA-1:exon:19449;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62851394	62851475	62851394	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62851892	62852010	62851892	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62852594	62852796	62852594	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62852884	62852978	62852884	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62853201	62853310	62853201	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62853419	62853535	62853419	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62853618	62853719	62853618	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62853840	62854051	62853840	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62854144	62854330	62854144	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62854373	62854480	62854373	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1
chr2_2	CDS	62854981	62855103	62854981	ID=Msa0263450-mRNA-1:cds;Parent=Msa0263450-mRNA-1

Gene Sequence

>Msa0263450

TATCTTTTATTTGGTGGTGGATTTCCTCACAGACCTGTGGAAGATCTCGCATTTGCTGTCGCACGCTTTTTCCAACGAGGCGGAATTATTAGGCAGCCGAAGTGGAGTCATCTTAAAGATTTGCACAAGGCCATAAAGCTTTGTGAAGAAGCATTAATAGCTACAGAACCCAAGATTACTTCTCTTGGTCCAAACCTAGAGATTAATTCTGCATCTGTGATTTCAAACTTCGTAACTGAATCTTCAAAAGAAGATATCAGTTCTTTAGAAACTTCAAGTTCAAAATGGAGTTGGATAAAGGAACCTGTGGGTATTTCGAAGGATGATATATTTTCAAAAACTGGATTACTTGAGCAAATAAATATCACCGCTGATAGAAGTGACTACTTGTGGTACTCATTAAGCGTTGATCTTAAGGATGATCCTGGTTCTCAAACTTTCCTTCACATTGAATCGCTCGGCCATGACCTTCATGCCTTCGTAAACGGCAAGCTTGCAGGGAGTCAAACCGGGAACAAAGACAAACCTAAGCTTAATGTGGACATCCCGATCACAGTACTTTCTGGAAAGAATAAAATTGATCTGCTGAGTTTAACAGTTGGACTTCAGAACTATGGAGCTTTTTTTGACACATGGGGAGCGGGGATCACCGGTCCAGTGATATTGAAAGGTTTGAAGAATGGCAACAACACTCTTGATCTCTCCTCTCGGAAGTGGACATACCAGGTCGGCCTAAAAGGTGAAGATTTAGGTCTCTCTAGTGGAAATTCCGGAGGATGGAATTCACAGTCTACTTTCCCTAAGAACCAACCGTTGATTTGGTACAAGACAAACTTTGATGCTCCATCCGGCAGTAATCCAGTTGCGATTGACTTCACGGGGATGGGAAAAGGTGAGGCTTGGGTAAATGGACAAAGCATTGGGCGATACTGGCCTACATATGTTGCTTCAAATGCCGATTGCACAGACTCATGCAACTACAGAGGACCTTTTACTCAAACCAAATGTCACATGAATTGTGGAAAACCATCACAGACATTATACCATGTACCACGATCGTTTTTGAAACCAAACGACAACACTCTTGTATTGTTTGAGGAAAGTGGTGGTGATCCAACACAAATAGCTTTTGCTACAAAACAGCTAGAAAGTTTGTGTGCACATGTATCTGATTCTCACCCACCTCAAATAGACTTGTGGAACCAAGATACAGAATCAGGGGAAAAAGTAATCTCTTCCATTAAATTTGCAAGCTATGGAACACCACTAGGGACATGCGGAAACTTCTACCACGGACGCTGCAGAAGCAATAAGGCGATGTCAATTGTAAAGAAGGCCTGCATTGGATCAAGAAGTTGTAGTGTTGGAGTATCAACTGATACATTTGGAGACCCTTGTAGAGGAGTGCCAAAGAGTTTAGCTGTTGAAGCTACTTGTGCTTATAGCCATACAGACATG

Protein sequence

>Msa0263450

YLLFGGGFPHRPVEDLAFAVARFFQRGGIIRQPKWSHLKDLHKAIKLCEEALIATEPKITSLGPNLEINSASVISNFVTESSKEDISSLETSSSKWSWIKEPVGISKDDIFSKTGLLEQINITADRSDYLWYSLSVDLKDDPGSQTFLHIESLGHDLHAFVNGKLAGSQTGNKDKPKLNVDIPITVLSGKNKIDLLSLTVGLQNYGAFFDTWGAGITGPVILKGLKNGNNTLDLSSRKWTYQVGLKGEDLGLSSGNSGGWNSQSTFPKNQPLIWYKTNFDAPSGSNPVAIDFTGMGKGEAWVNGQSIGRYWPTYVASNADCTDSCNYRGPFTQTKCHMNCGKPSQTLYHVPRSFLKPNDNTLVLFEESGGDPTQIAFATKQLESLCAHVSDSHPPQIDLWNQDTESGEKVISSIKFASYGTPLGTCGNFYHGRCRSNKAMSIVKKACIGSRSCSVGVSTDTFGDPCRGVPKSLAVEATCAYSHTDM