AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342900 MtrunA17_Chr4g0037241 78.409 88 6 1 3 90 79 153 8.08e-41 131
Msa1342900 MtrunA17_Chr4g0037241 69.663 89 14 1 1 89 1 76 3.39e-34 114
Msa1342900 MtrunA17_Chr5g0444101 78.409 88 6 1 3 90 79 153 8.08e-41 131
Msa1342900 MtrunA17_Chr5g0444101 69.663 89 14 1 1 89 1 76 3.39e-34 114
Msa1342900 MtrunA17_Chr6g0475951 69.663 89 14 1 1 89 1 76 2.51e-35 115
Msa1342900 MtrunA17_Chr7g0266661 69.663 89 14 1 1 89 1 76 4.26e-35 116
Msa1342900 MtrunA17_Chr1g0178381 69.663 89 14 1 1 89 1 76 4.26e-35 116
Msa1342900 MtrunA17_Chr3g0127481 69.663 89 14 1 1 89 1 76 4.26e-35 116
Msa1342900 MtrunA17_Chr5g0413361 69.663 89 14 1 1 89 1 76 1.62e-34 115
Msa1342900 MtrunA17_Chr8g0380181 69.663 89 14 1 1 89 1 76 1.69e-34 115
Msa1342900 MtrunA17_Chr6g0475961 69.663 89 14 1 1 89 4 79 5.47e-34 115
Msa1342900 MtrunA17_Chr6g0475961 69.663 89 14 1 1 89 80 155 5.47e-34 115
Msa1342900 MtrunA17_Chr6g0475961 72.000 50 1 1 1 50 156 192 7.03e-14 63.5
Msa1342900 MtrunA17_Chr7g0274921 69.663 89 14 1 1 89 3 78 1.25e-33 115
Msa1342900 MtrunA17_Chr7g0274921 69.663 89 14 1 1 89 79 154 1.25e-33 115
Msa1342900 MtrunA17_Chr7g0274921 69.663 89 14 1 1 89 155 230 1.25e-33 115
Msa1342900 MtrunA17_Chr1g0181441 69.663 89 14 1 1 89 1 76 1.73e-33 115
Msa1342900 MtrunA17_Chr1g0181441 69.663 89 14 1 1 89 77 152 1.73e-33 115
Msa1342900 MtrunA17_Chr1g0181441 69.663 89 14 1 1 89 153 228 1.73e-33 115
Msa1342900 MtrunA17_Chr4g0041751 69.663 89 14 1 1 89 77 152 2.33e-33 114
Msa1342900 MtrunA17_Chr4g0041751 68.539 89 15 1 1 89 1 76 1.14e-32 113
Msa1342900 MtrunA17_Chr4g0041751 53.933 89 28 1 1 89 153 228 1.02e-20 82.0
Msa1342900 MtrunA17_Chr8g0377821 70.000 90 14 1 1 90 313 389 3.46e-33 117
Msa1342900 MtrunA17_Chr8g0377821 69.663 89 14 1 1 89 9 84 3.05e-32 115
Msa1342900 MtrunA17_Chr8g0377821 69.663 89 14 1 1 89 85 160 3.05e-32 115
Msa1342900 MtrunA17_Chr8g0377821 69.663 89 14 1 1 89 161 236 3.05e-32 115
Msa1342900 MtrunA17_Chr8g0377821 69.663 89 14 1 1 89 237 312 3.05e-32 115
Msa1342900 MtrunA17_Chr4g0046801 69.663 89 14 1 1 89 4 79 5.94e-32 115
Msa1342900 MtrunA17_Chr4g0046801 69.663 89 14 1 1 89 80 155 5.94e-32 115
Msa1342900 MtrunA17_Chr4g0046801 69.663 89 14 1 1 89 156 231 5.94e-32 115
Msa1342900 MtrunA17_Chr4g0046801 69.663 89 14 1 1 89 232 307 5.94e-32 115
Msa1342900 MtrunA17_Chr4g0046801 69.663 89 14 1 1 89 308 383 5.94e-32 115
Msa1342900 MtrunA17_Chr4g0046801 69.663 89 14 1 1 89 384 459 5.94e-32 115
Msa1342900 MtrunA17_Chr4g0041641 69.663 89 14 1 1 89 5 80 6.12e-32 115
Msa1342900 MtrunA17_Chr4g0041641 69.663 89 14 1 1 89 81 156 6.12e-32 115
Msa1342900 MtrunA17_Chr4g0041641 69.663 89 14 1 1 89 157 232 6.12e-32 115
Msa1342900 MtrunA17_Chr4g0041641 69.663 89 14 1 1 89 233 308 6.12e-32 115
Msa1342900 MtrunA17_Chr4g0041641 69.663 89 14 1 1 89 309 384 6.12e-32 115
Msa1342900 MtrunA17_Chr4g0041641 69.663 89 14 1 1 89 385 460 6.12e-32 115
Msa1342900 MtrunA17_Chr8g0342711 69.663 89 14 1 1 89 4 79 1.01e-31 115
Msa1342900 MtrunA17_Chr8g0342711 69.663 89 14 1 1 89 80 155 1.01e-31 115
Msa1342900 MtrunA17_Chr8g0342711 69.663 89 14 1 1 89 156 231 1.01e-31 115
Msa1342900 MtrunA17_Chr8g0342711 69.663 89 14 1 1 89 232 307 1.01e-31 115
Msa1342900 MtrunA17_Chr8g0342711 69.663 89 14 1 1 89 308 383 1.01e-31 115
Msa1342900 MtrunA17_Chr8g0342711 69.663 89 14 1 1 89 384 459 1.01e-31 115
Msa1342900 MtrunA17_Chr8g0342711 69.663 89 14 1 1 89 460 535 1.01e-31 115
Msa1342900 MtrunA17_Chr4g0048591 69.663 89 14 1 1 89 4 79 1.10e-31 115
Msa1342900 MtrunA17_Chr4g0048591 69.663 89 14 1 1 89 80 155 1.10e-31 115
Msa1342900 MtrunA17_Chr4g0048591 69.663 89 14 1 1 89 156 231 1.10e-31 115
Msa1342900 MtrunA17_Chr4g0048591 69.663 89 14 1 1 89 232 307 1.10e-31 115
Msa1342900 MtrunA17_Chr4g0048591 69.663 89 14 1 1 89 384 459 1.10e-31 115
Msa1342900 MtrunA17_Chr4g0048591 69.663 89 14 1 1 89 460 535 1.10e-31 115
Msa1342900 MtrunA17_Chr4g0048591 68.539 89 15 1 1 89 308 383 1.10e-30 112
Msa1342900 MtrunA17_Chr4g0041701 69.663 89 14 1 1 89 1 76 1.11e-31 115
Msa1342900 MtrunA17_Chr4g0041701 69.663 89 14 1 1 89 77 152 1.11e-31 115
Msa1342900 MtrunA17_Chr4g0041701 69.663 89 14 1 1 89 153 228 1.11e-31 115
Msa1342900 MtrunA17_Chr4g0041701 69.663 89 14 1 1 89 229 304 1.11e-31 115
Msa1342900 MtrunA17_Chr4g0041701 69.663 89 14 1 1 89 305 380 1.11e-31 115
Msa1342900 MtrunA17_Chr4g0041701 69.663 89 14 1 1 89 381 456 1.11e-31 115
Msa1342900 MtrunA17_Chr4g0041701 69.663 89 14 1 1 89 457 532 1.11e-31 115
Msa1342900 MtrunA17_Chr4g0046831 69.663 89 14 1 1 89 80 155 1.29e-31 115
Msa1342900 MtrunA17_Chr4g0046831 69.663 89 14 1 1 89 156 231 1.29e-31 115
Msa1342900 MtrunA17_Chr4g0046831 69.663 89 14 1 1 89 232 307 1.29e-31 115
Msa1342900 MtrunA17_Chr4g0046831 69.663 89 14 1 1 89 368 443 1.29e-31 115
Msa1342900 MtrunA17_Chr4g0046831 69.663 89 14 1 1 89 444 519 1.29e-31 115
Msa1342900 MtrunA17_Chr4g0046831 69.663 89 14 1 1 89 520 595 1.29e-31 115
Msa1342900 MtrunA17_Chr4g0046831 69.663 89 14 1 1 89 4 79 1.38e-31 115
Msa1342900 MtrunA17_Chr8g0374171 67.416 89 16 1 1 89 74 149 3.28e-24 89.7
Msa1342900 MtrunA17_Chr8g0374161 73.684 57 2 1 1 57 9 52 1.37e-19 74.7
Msa1342900 MtrunA17_Chr5g0433631 54.762 84 25 1 1 84 266 336 4.85e-19 79.3
Msa1342900 MtrunA17_Chr5g0433721 51.111 90 30 2 1 89 194 270 1.72e-18 77.0
Msa1342900 MtrunA17_Chr1g0169371 50.000 88 31 1 1 88 215 289 3.24e-18 76.6
Msa1342900 MtrunA17_Chr5g0428191 51.136 88 30 1 1 88 241 315 1.52e-17 75.1
Msa1342900 MtrunA17_Chr5g0424981 43.182 88 37 1 1 88 2 76 6.85e-16 65.9
Msa1342900 MtrunA17_Chr5g0433661 45.455 88 35 1 1 88 278 352 1.51e-14 67.0
Msa1342900 MtrunA17_Chr5g0433681 42.697 89 37 2 1 88 1 76 1.94e-14 62.4
Msa1342900 MtrunA17_Chr5g0433411 46.512 86 33 1 1 86 267 339 3.28e-14 65.9
Msa1342900 MtrunA17_Chr2g0298951 43.182 88 37 2 1 88 236 310 9.39e-14 64.7
Msa1342900 MtrunA17_Chr2g0298941 42.045 88 38 1 1 88 177 251 1.56e-13 63.5
Msa1342900 MtrunA17_Chr1g0169401 43.373 83 34 1 7 89 2 71 5.63e-13 58.5
Msa1342900 MtrunA17_Chr5g0424971 42.045 88 38 1 1 88 252 326 5.69e-13 62.4
Msa1342900 MtrunA17_Chr5g0433521 38.636 88 41 1 1 88 240 314 8.63e-13 62.0
Msa1342900 MtrunA17_Chr7g0259431 40.909 88 39 1 1 88 223 297 1.29e-12 61.2
Msa1342900 MtrunA17_Chr4g0003111 37.500 88 42 1 1 88 4 78 5.41e-12 56.2
Msa1342900 MtrunA17_Chr7g0223111 46.591 88 35 2 1 88 267 342 9.71e-12 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342900 AT1G31340.1 77.011 87 7 1 3 89 79 152 5.77e-39 127
Msa1342900 AT1G31340.1 68.889 90 15 1 1 90 1 77 6.90e-34 114
Msa1342900 AT2G35635.1 75.862 87 8 1 3 89 79 152 6.71e-38 124
Msa1342900 AT2G35635.1 68.889 90 15 1 1 90 1 77 5.25e-34 114
Msa1342900 AT2G36170.1 69.663 89 14 1 1 89 1 76 4.62e-35 116
Msa1342900 AT3G52590.1 69.663 89 14 1 1 89 1 76 4.62e-35 116
Msa1342900 AT1G23410.1 69.663 89 14 1 1 89 1 76 2.64e-34 115
Msa1342900 AT4G05320.7 69.663 89 14 1 1 89 1 76 2.92e-34 115
Msa1342900 AT4G05320.7 69.663 89 14 1 1 89 77 152 2.92e-34 115
Msa1342900 AT4G05050.4 69.663 89 14 1 1 89 1 76 2.92e-34 115
Msa1342900 AT4G05050.4 69.663 89 14 1 1 89 77 152 2.92e-34 115
Msa1342900 AT2G47110.2 69.663 89 14 1 1 89 1 76 3.69e-34 115
Msa1342900 AT2G47110.1 69.663 89 14 1 1 89 1 76 3.69e-34 115
Msa1342900 AT3G62250.1 69.663 89 14 1 1 89 1 76 3.73e-34 115
Msa1342900 AT4G02890.2 69.663 89 14 1 1 89 1 76 1.95e-33 115
Msa1342900 AT4G02890.2 69.663 89 14 1 1 89 77 152 1.95e-33 115
Msa1342900 AT4G02890.2 69.663 89 14 1 1 89 153 228 1.95e-33 115
Msa1342900 AT4G02890.1 69.663 89 14 1 1 89 1 76 1.95e-33 115
Msa1342900 AT4G02890.1 69.663 89 14 1 1 89 77 152 1.95e-33 115
Msa1342900 AT4G02890.1 69.663 89 14 1 1 89 153 228 1.95e-33 115
Msa1342900 AT4G05050.2 69.663 89 14 1 1 89 1 76 1.95e-33 115
Msa1342900 AT4G05050.2 69.663 89 14 1 1 89 77 152 1.95e-33 115
Msa1342900 AT4G05050.2 69.663 89 14 1 1 89 153 228 1.95e-33 115
Msa1342900 AT4G05050.1 69.663 89 14 1 1 89 1 76 1.95e-33 115
Msa1342900 AT4G05050.1 69.663 89 14 1 1 89 77 152 1.95e-33 115
Msa1342900 AT4G05050.1 69.663 89 14 1 1 89 153 228 1.95e-33 115
Msa1342900 AT4G05050.3 69.663 89 14 1 1 89 1 76 1.95e-33 115
Msa1342900 AT4G05050.3 69.663 89 14 1 1 89 77 152 1.95e-33 115
Msa1342900 AT4G05050.3 69.663 89 14 1 1 89 153 228 1.95e-33 115
Msa1342900 AT1G11980.1 65.169 89 18 1 1 89 1 76 2.71e-33 110
Msa1342900 AT1G55060.1 68.539 89 15 1 1 89 77 152 5.00e-33 114
Msa1342900 AT1G55060.1 66.667 90 17 1 1 90 153 229 2.80e-31 109
Msa1342900 AT1G55060.1 60.674 89 22 1 1 89 1 76 2.98e-28 102
Msa1342900 AT5G03240.3 68.889 90 15 1 1 90 229 305 6.82e-33 115
Msa1342900 AT5G03240.3 69.663 89 14 1 1 89 1 76 9.59e-33 115
Msa1342900 AT5G03240.3 69.663 89 14 1 1 89 77 152 9.59e-33 115
Msa1342900 AT5G03240.3 69.663 89 14 1 1 89 153 228 9.59e-33 115
Msa1342900 AT5G03240.2 68.889 90 15 1 1 90 229 305 6.82e-33 115
Msa1342900 AT5G03240.2 69.663 89 14 1 1 89 1 76 9.59e-33 115
Msa1342900 AT5G03240.2 69.663 89 14 1 1 89 77 152 9.59e-33 115
Msa1342900 AT5G03240.2 69.663 89 14 1 1 89 153 228 9.59e-33 115
Msa1342900 AT5G03240.1 68.889 90 15 1 1 90 229 305 6.82e-33 115
Msa1342900 AT5G03240.1 69.663 89 14 1 1 89 1 76 9.59e-33 115
Msa1342900 AT5G03240.1 69.663 89 14 1 1 89 77 152 9.59e-33 115
Msa1342900 AT5G03240.1 69.663 89 14 1 1 89 153 228 9.59e-33 115
Msa1342900 AT5G20620.2 68.889 90 15 1 1 90 229 305 6.82e-33 115
Msa1342900 AT5G20620.2 69.663 89 14 1 1 89 1 76 9.59e-33 115
Msa1342900 AT5G20620.2 69.663 89 14 1 1 89 77 152 9.59e-33 115
Msa1342900 AT5G20620.2 69.663 89 14 1 1 89 153 228 9.59e-33 115
Msa1342900 AT4G05320.5 69.663 89 14 1 1 89 1 76 9.31e-33 115
Msa1342900 AT4G05320.5 69.663 89 14 1 1 89 77 152 9.31e-33 115
Msa1342900 AT4G05320.5 69.663 89 14 1 1 89 153 228 9.31e-33 115
Msa1342900 AT4G05320.5 69.663 89 14 1 1 89 229 304 9.31e-33 115
Msa1342900 AT4G05320.8 69.663 89 14 1 1 89 1 76 9.31e-33 115
Msa1342900 AT4G05320.8 69.663 89 14 1 1 89 77 152 9.31e-33 115
Msa1342900 AT4G05320.8 69.663 89 14 1 1 89 153 228 9.31e-33 115
Msa1342900 AT4G05320.8 69.663 89 14 1 1 89 229 304 9.31e-33 115
Msa1342900 AT4G02890.3 69.663 89 14 1 1 89 1 76 9.31e-33 115
Msa1342900 AT4G02890.3 69.663 89 14 1 1 89 77 152 9.31e-33 115
Msa1342900 AT4G02890.3 69.663 89 14 1 1 89 153 228 9.31e-33 115
Msa1342900 AT4G02890.3 69.663 89 14 1 1 89 229 304 9.31e-33 115
Msa1342900 AT4G02890.4 69.663 89 14 1 1 89 1 76 9.31e-33 115
Msa1342900 AT4G02890.4 69.663 89 14 1 1 89 77 152 9.31e-33 115
Msa1342900 AT4G02890.4 69.663 89 14 1 1 89 153 228 9.31e-33 115
Msa1342900 AT4G02890.4 69.663 89 14 1 1 89 229 304 9.31e-33 115
Msa1342900 AT1G65350.1 69.663 89 14 1 1 89 1 76 1.19e-32 115
Msa1342900 AT1G65350.1 68.539 89 15 1 1 89 152 227 1.35e-31 112
Msa1342900 AT1G65350.1 68.539 89 14 2 1 89 77 151 1.19e-29 107
Msa1342900 AT1G65350.1 56.731 104 18 2 1 90 228 318 6.67e-26 97.8
Msa1342900 AT5G37640.1 68.539 89 15 1 1 89 79 154 2.00e-32 114
Msa1342900 AT5G37640.1 64.045 89 19 1 1 89 155 230 1.88e-28 104
Msa1342900 AT5G37640.1 64.444 90 18 2 1 89 231 307 1.76e-26 99.4
Msa1342900 AT5G37640.1 55.056 89 27 1 1 89 3 78 1.07e-21 86.7
Msa1342900 AT5G20620.1 68.889 90 15 1 1 90 305 381 2.38e-32 115
Msa1342900 AT5G20620.1 69.663 89 14 1 1 89 1 76 3.33e-32 115
Msa1342900 AT5G20620.1 69.663 89 14 1 1 89 77 152 3.33e-32 115
Msa1342900 AT5G20620.1 69.663 89 14 1 1 89 153 228 3.33e-32 115
Msa1342900 AT5G20620.1 69.663 89 14 1 1 89 229 304 3.33e-32 115
Msa1342900 AT4G05320.1 69.663 89 14 1 1 89 1 76 3.35e-32 115
Msa1342900 AT4G05320.1 69.663 89 14 1 1 89 77 152 3.35e-32 115
Msa1342900 AT4G05320.1 69.663 89 14 1 1 89 153 228 3.35e-32 115
Msa1342900 AT4G05320.1 69.663 89 14 1 1 89 229 304 3.35e-32 115
Msa1342900 AT4G05320.1 69.663 89 14 1 1 89 305 380 3.35e-32 115
Msa1342900 AT4G05320.6 69.663 89 14 1 1 89 1 76 3.35e-32 115
Msa1342900 AT4G05320.6 69.663 89 14 1 1 89 77 152 3.35e-32 115
Msa1342900 AT4G05320.6 69.663 89 14 1 1 89 153 228 3.35e-32 115
Msa1342900 AT4G05320.6 69.663 89 14 1 1 89 229 304 3.35e-32 115
Msa1342900 AT4G05320.6 69.663 89 14 1 1 89 305 380 3.35e-32 115
Msa1342900 AT4G05320.3 69.663 89 14 1 1 89 1 76 3.35e-32 115
Msa1342900 AT4G05320.3 69.663 89 14 1 1 89 77 152 3.35e-32 115
Msa1342900 AT4G05320.3 69.663 89 14 1 1 89 153 228 3.35e-32 115
Msa1342900 AT4G05320.3 69.663 89 14 1 1 89 229 304 3.35e-32 115
Msa1342900 AT4G05320.3 69.663 89 14 1 1 89 305 380 3.35e-32 115
Msa1342900 AT4G05320.2 69.663 89 14 1 1 89 1 76 8.21e-32 115
Msa1342900 AT4G05320.2 69.663 89 14 1 1 89 77 152 8.21e-32 115
Msa1342900 AT4G05320.2 69.663 89 14 1 1 89 153 228 8.21e-32 115
Msa1342900 AT4G05320.2 69.663 89 14 1 1 89 229 304 8.21e-32 115
Msa1342900 AT4G05320.2 69.663 89 14 1 1 89 305 380 8.21e-32 115
Msa1342900 AT4G05320.2 69.663 89 14 1 1 89 381 456 8.21e-32 115
Msa1342900 AT4G05320.4 69.663 89 14 1 1 89 1 76 8.21e-32 115
Msa1342900 AT4G05320.4 69.663 89 14 1 1 89 77 152 8.21e-32 115
Msa1342900 AT4G05320.4 69.663 89 14 1 1 89 153 228 8.21e-32 115
Msa1342900 AT4G05320.4 69.663 89 14 1 1 89 229 304 8.21e-32 115
Msa1342900 AT4G05320.4 69.663 89 14 1 1 89 305 380 8.21e-32 115
Msa1342900 AT4G05320.4 69.663 89 14 1 1 89 381 456 8.21e-32 115
Msa1342900 AT3G09790.2 65.169 89 18 1 1 89 79 154 7.05e-28 105
Msa1342900 AT3G09790.2 59.551 89 23 1 1 89 3 78 7.83e-24 94.0
Msa1342900 AT3G09790.2 57.471 87 24 1 1 87 552 625 2.04e-20 84.3
Msa1342900 AT3G09790.2 50.000 96 28 2 1 89 469 551 6.33e-19 80.1
Msa1342900 AT3G09790.2 50.562 89 31 1 1 89 393 468 4.35e-18 77.8
Msa1342900 AT3G09790.2 51.685 89 28 2 1 87 319 394 2.09e-17 75.9
Msa1342900 AT3G09790.2 48.936 94 30 2 1 89 238 318 9.26e-17 73.9
Msa1342900 AT3G09790.2 47.368 95 30 3 1 88 155 236 1.39e-16 73.2
Msa1342900 AT3G09790.1 65.169 89 18 1 1 89 79 154 7.05e-28 105
Msa1342900 AT3G09790.1 59.551 89 23 1 1 89 3 78 7.83e-24 94.0
Msa1342900 AT3G09790.1 57.471 87 24 1 1 87 552 625 2.04e-20 84.3
Msa1342900 AT3G09790.1 50.000 96 28 2 1 89 469 551 6.33e-19 80.1
Msa1342900 AT3G09790.1 50.562 89 31 1 1 89 393 468 4.35e-18 77.8
Msa1342900 AT3G09790.1 51.685 89 28 2 1 87 319 394 2.09e-17 75.9
Msa1342900 AT3G09790.1 48.936 94 30 2 1 89 238 318 9.26e-17 73.9
Msa1342900 AT3G09790.1 47.368 95 30 3 1 88 155 236 1.39e-16 73.2
Msa1342900 AT1G53930.1 52.326 86 28 1 1 86 86 158 5.21e-22 84.3
Msa1342900 AT1G53950.1 48.864 88 32 1 1 88 69 143 3.24e-18 73.9

Find 43 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCGTCGTTCTTTCT+TGG 0.186573 tig0006056:+125884 None:intergenic
CGATGCGGAGTATGGGTAAT+TGG 0.206513 tig0006056:+125970 None:intergenic
CTCGAGAGTGATAGTCTTTC+CGG 0.212687 tig0006056:+125793 None:intergenic
CTTGGTCACTTTCTAGTTCT+TGG 0.254399 tig0006056:-122410 Msa1342900:three_prime_UTR
AGTTTGAGCGATGCGGAGTA+TGG 0.275126 tig0006056:+125962 None:intergenic
GAGCTTCCTTTCATGTCTTT+AGG 0.290193 tig0006056:+122362 None:intergenic
TATAAATTTGGGGTAACTAT+TGG 0.336842 tig0006056:-122289 Msa1342900:three_prime_UTR
TCACTTGGTGCTTGCATTGA+GGG 0.346912 tig0006056:-122489 Msa1342900:CDS
AACAATTATGTCCTCAGAGA+TGG 0.437971 tig0006056:+122330 None:intergenic
TTCACTTGGTGCTTGCATTG+AGG 0.449045 tig0006056:-122490 Msa1342900:CDS
TTGAGGGGTGGTAATTAGTA+AGG 0.455140 tig0006056:-122473 Msa1342900:exon
AGAGAGTACCTCTGCTGCAC+AGG 0.466683 tig0006056:+124588 None:intergenic
GGGTGGTTCTGTGCTTCACT+TGG 0.473264 tig0006056:-122504 Msa1342900:CDS
ATCTTCGTCAAAACTTTGAC+CGG 0.482710 tig0006056:-125812 Msa1342900:CDS
ATACGATCAATTGTATCAGT+TGG 0.484906 tig0006056:+124645 None:intergenic
CACTTGGTGCTTGCATTGAG+GGG 0.485261 tig0006056:-122488 Msa1342900:CDS
GATGCGGAGTATGGGTAATT+GGG 0.487568 tig0006056:+125971 None:intergenic
AAATTTGGGGTAACTATTGG+TGG 0.492106 tig0006056:-122286 Msa1342900:three_prime_UTR
ACCCTAACTAACCTGGATCT+TGG 0.496140 tig0006056:+125736 None:intergenic
CAACGTCAAGGCCAAGATCC+AGG 0.500226 tig0006056:-125747 Msa1342900:intron
GACATTAGCTTGTTTAGACT+TGG 0.510967 tig0006056:-122428 Msa1342900:three_prime_UTR
TGCTGCAGGCTCATATATGC+TGG 0.530859 tig0006056:-122572 Msa1342900:intron
ACAATTATGTCCTCAGAGAT+GGG 0.532913 tig0006056:+122331 None:intergenic
TTGTGAGAGCGCGATAGAGA+CGG 0.535448 tig0006056:+125909 None:intergenic
AGAGCGCGATAGAGACGGAA+AGG 0.537317 tig0006056:+125914 None:intergenic
CTTGGCCTTGACGTTGTCGA+TGG 0.546175 tig0006056:+125754 None:intergenic
ACAAGCTAATGTCTTGAGAT+CGG 0.547092 tig0006056:+122438 None:intergenic
GTTTGAGCGATGCGGAGTAT+GGG 0.557728 tig0006056:+125963 None:intergenic
GAGTACCTCTGCTGCACAGG+TGG 0.559186 tig0006056:+124591 None:intergenic
TGATACAATTGATCGTATCA+AGG 0.564246 tig0006056:-124640 Msa1342900:CDS
GCTAAAGAGTACAACATTGA+GGG 0.566179 tig0006056:-122524 Msa1342900:CDS
GAGCGCGATAGAGACGGAAA+GGG 0.571124 tig0006056:+125915 None:intergenic
AGCTAAAGAGTACAACATTG+AGG 0.583787 tig0006056:-122525 Msa1342900:CDS
GAATTCCACCTGTGCAGCAG+AGG 0.584170 tig0006056:-124596 Msa1342900:intron
GTTATTTAGTTTGAGCGATG+CGG 0.602160 tig0006056:+125955 None:intergenic
TTGGTGCTTGCATTGAGGGG+TGG 0.618700 tig0006056:-122485 Msa1342900:CDS
TCTGAACCTAAAGACATGAA+AGG 0.620725 tig0006056:-122368 Msa1342900:three_prime_UTR
ATTCATAAACAGAAGTACAA+TGG 0.633072 tig0006056:-122202 Msa1342900:three_prime_UTR
TCTATACTCGCCCATCTCTG+AGG 0.660317 tig0006056:-122341 Msa1342900:three_prime_UTR
CGACACCATCGACAACGTCA+AGG 0.661901 tig0006056:-125759 Msa1342900:CDS
CGGAAAGACTATCACTCTCG+AGG 0.665568 tig0006056:-125792 Msa1342900:CDS
AAAGAGTACAACATTGAGGG+TGG 0.697133 tig0006056:-122521 Msa1342900:CDS
TATTTGAAGCAACTACCCTG+TGG 0.724318 tig0006056:+125994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTCATAATAAAAAAATTA+TGG + tig0006056:124737-124756 None:intergenic 10.0%
!! AATTTAAGAGTTATAACATT+TGG + tig0006056:123647-123666 None:intergenic 15.0%
!!! ACTTTTGAATTGAAAATTAT+TGG - tig0006056:124064-124083 Msa1342900:intron 15.0%
!! GTTAAGAGATTTATTTATTT+AGG - tig0006056:125112-125131 Msa1342900:intron 15.0%
!! TAAGCATATAAAAGAATGTT+TGG - tig0006056:123995-124014 Msa1342900:intron 20.0%
!!! TGCATGAATATTTAACTTAT+AGG + tig0006056:124025-124044 None:intergenic 20.0%
!!! TTTTCAATTCAAAAGTCAAA+CGG + tig0006056:124060-124079 None:intergenic 20.0%
!!! TTATTTCTCTAATGATTTGT+AGG + tig0006056:124338-124357 None:intergenic 20.0%
!! TACAAATCATTAGAGAAATA+AGG - tig0006056:124337-124356 Msa1342900:intron 20.0%
!!! TGTTTTTTAAAGTTTAGAAC+AGG + tig0006056:124526-124545 None:intergenic 20.0%
!!! TTATGAAGAGAACTAGTTTT+GGG + tig0006056:122624-122643 None:intergenic 25.0%
!!! ATTATGAAGAGAACTAGTTT+TGG + tig0006056:122625-122644 None:intergenic 25.0%
!! ATGATATTTAAGAAAAGTGC+TGG + tig0006056:122784-122803 None:intergenic 25.0%
! TTAAAAAATAGCACATAGAC+AGG + tig0006056:123107-123126 None:intergenic 25.0%
! AGCTTAGTTTCAGTTTATTT+GGG + tig0006056:123181-123200 None:intergenic 25.0%
! TAGCTTAGTTTCAGTTTATT+TGG + tig0006056:123182-123201 None:intergenic 25.0%
! ACGTCATATAAAACAGATAA+AGG + tig0006056:123210-123229 None:intergenic 25.0%
! TAAAGTCTTCACTTTAATCA+TGG + tig0006056:123471-123490 None:intergenic 25.0%
! ATTAAAGTGAAGACTTTAAC+TGG - tig0006056:123473-123492 Msa1342900:intron 25.0%
!! ATTATCTGCCAGTATTATTT+TGG - tig0006056:123713-123732 Msa1342900:intron 25.0%
! TTTATCTGCCAAAATAATAC+TGG + tig0006056:123724-123743 None:intergenic 25.0%
!!! TTTTAAAGCTTACTCATGTA+AGG - tig0006056:123797-123816 Msa1342900:intron 25.0%
! CCAAAAATCATATTAAACAG+AGG + tig0006056:123953-123972 None:intergenic 25.0%
!! CCTCTGTTTAATATGATTTT+TGG - tig0006056:123950-123969 Msa1342900:intron 25.0%
! CATATAAAAGAATGTTTGGA+GGG - tig0006056:123999-124018 Msa1342900:intron 25.0%
!! GTATTTCTTGTTTACATAGT+TGG + tig0006056:124309-124328 None:intergenic 25.0%
! GTGTAATATGAGTAAATCTA+TGG + tig0006056:124607-124626 None:intergenic 25.0%
!! CCTTTTAGTATGATTCTTTT+CGG - tig0006056:124670-124689 Msa1342900:intron 25.0%
!! CTTTTAGTATGATTCTTTTC+GGG - tig0006056:124671-124690 Msa1342900:intron 25.0%
! TCAAAAAATTTCAGTTCAGA+AGG - tig0006056:124704-124723 Msa1342900:intron 25.0%
! TTCAGTTAATTGTTTGAGAA+GGG + tig0006056:124868-124887 None:intergenic 25.0%
! TTTCAGTTAATTGTTTGAGA+AGG + tig0006056:124869-124888 None:intergenic 25.0%
! ATCTAGTATTTCACAAACAT+CGG - tig0006056:124990-125009 Msa1342900:intron 25.0%
!! TTGTATCTTTTGAATATCCA+GGG - tig0006056:125242-125261 Msa1342900:intron 25.0%
!! TAATTGTTCTTTTATGTGCT+TGG - tig0006056:125851-125870 Msa1342900:five_prime_UTR 25.0%
!!! TGTGCTTGGTTTTATAAATT+TGG - tig0006056:125865-125884 Msa1342900:five_prime_UTR 25.0%
!!! GTGCTTGGTTTTATAAATTT+GGG - tig0006056:125866-125885 Msa1342900:five_prime_UTR 25.0%
!!! TGCTTGGTTTTATAAATTTG+GGG - tig0006056:125867-125886 Msa1342900:five_prime_UTR 25.0%
!! TATAAATTTGGGGTAACTAT+TGG - tig0006056:125877-125896 Msa1342900:five_prime_UTR 25.0%
!!! TGATTAAGATACCACTTTTT+GGG + tig0006056:125929-125948 None:intergenic 25.0%
!!! TTGATTAAGATACCACTTTT+TGG + tig0006056:125930-125949 None:intergenic 25.0%
!! ATTCATAAACAGAAGTACAA+TGG - tig0006056:125964-125983 Msa1342900:five_prime_UTR 25.0%
GAATTGAATATCAGATCGTA+TGG - tig0006056:122804-122823 Msa1342900:intron 30.0%
TCTATAAGATTTAGTGATCC+TGG - tig0006056:122975-122994 Msa1342900:intron 30.0%
ATAAACTGAAACTAAGCTAC+AGG - tig0006056:123183-123202 Msa1342900:intron 30.0%
TAAACTGAAACTAAGCTACA+GGG - tig0006056:123184-123203 Msa1342900:intron 30.0%
! TGCTGATTACAACATACAAA+AGG - tig0006056:123406-123425 Msa1342900:intron 30.0%
ATACGATCAATTGTATCAGT+TGG + tig0006056:123524-123543 None:intergenic 30.0%
TGATACAATTGATCGTATCA+AGG - tig0006056:123526-123545 Msa1342900:intron 30.0%
TCCATGCATTTATATGTCAT+TGG - tig0006056:123755-123774 Msa1342900:intron 30.0%
ACCAATGACATATAAATGCA+TGG + tig0006056:123759-123778 None:intergenic 30.0%
GCATATAAAAGAATGTTTGG+AGG - tig0006056:123998-124017 Msa1342900:intron 30.0%
AACTTGATCTCAAATTTCCT+CGG - tig0006056:124158-124177 Msa1342900:intron 30.0%
GCACATAGATAGTATTAATG+CGG - tig0006056:124273-124292 Msa1342900:intron 30.0%
TCATCAGTTTCAATTCTTTC+TGG - tig0006056:124453-124472 Msa1342900:intron 30.0%
!!! TAGAACAGGTTTTGAAAAAC+CGG + tig0006056:124512-124531 None:intergenic 30.0%
!!! TACACGACTGGTTTTTTAAA+AGG + tig0006056:124639-124658 None:intergenic 30.0%
CCGAAAAGAATCATACTAAA+AGG + tig0006056:124673-124692 None:intergenic 30.0%
!! TAGCGGATACTAATATTTTG+AGG + tig0006056:124903-124922 None:intergenic 30.0%
GTTTGTGAAATACTAGATAC+TGG + tig0006056:124988-125007 None:intergenic 30.0%
!! ATTTGGTGCTAATTAGAACT+GGG - tig0006056:125206-125225 Msa1342900:intron 30.0%
! CTTGTATCTTTTGAATATCC+AGG - tig0006056:125241-125260 Msa1342900:intron 30.0%
! ATGCTTTTAAACCCAAAAAG+TGG - tig0006056:125915-125934 Msa1342900:five_prime_UTR 30.0%
!! GTTATTTAGTTTGAGCGATG+CGG + tig0006056:122214-122233 None:intergenic 35.0%
ATCTTCGTCAAAACTTTGAC+CGG - tig0006056:122354-122373 Msa1342900:three_prime_UTR 35.0%
ACTGTTAACGTATGTGTGTT+AGG - tig0006056:122577-122596 Msa1342900:intron 35.0%
!!! ATTGTGTGCCTTTTAGAGTT+GGG - tig0006056:122666-122685 Msa1342900:intron 35.0%
GATCTCTTAGTAATAACGAG+AGG - tig0006056:122701-122720 Msa1342900:intron 35.0%
GAGCCGCATATTGAAATAAA+CGG + tig0006056:122742-122761 None:intergenic 35.0%
!! TGGGTTTTCACGATTTTGAT+CGG + tig0006056:122859-122878 None:intergenic 35.0%
GAGTGAAATCACAAAATCGT+GGG + tig0006056:122878-122897 None:intergenic 35.0%
TGAGTGAAATCACAAAATCG+TGG + tig0006056:122879-122898 None:intergenic 35.0%
AACATAAACAACTCAAAGCC+AGG + tig0006056:122996-123015 None:intergenic 35.0%
TTTGTCTGTTAGAGGATTAG+TGG - tig0006056:123243-123262 Msa1342900:intron 35.0%
CATTCATTTCTAACTGCTAG+TGG - tig0006056:123294-123313 Msa1342900:intron 35.0%
CTAGTGGAATATGTTGTTGT+AGG - tig0006056:123310-123329 Msa1342900:intron 35.0%
ATGTTGTTGTAGGACAAAGA+AGG - tig0006056:123320-123339 Msa1342900:intron 35.0%
AAAGGAATCAACTCTTCACT+TGG - tig0006056:123424-123443 Msa1342900:intron 35.0%
!!! TCTCTCTCTCTCATGTTTTT+TGG - tig0006056:123604-123623 Msa1342900:intron 35.0%
!!! CTCTCTCTCTCATGTTTTTT+GGG - tig0006056:123605-123624 Msa1342900:intron 35.0%
!! GAGTAAGCTTTAAAAGTGAG+CGG + tig0006056:123792-123811 None:intergenic 35.0%
!! GATTTTTGGATGCTTCATCT+AGG - tig0006056:123964-123983 Msa1342900:intron 35.0%
TTCAAAAGTCAAACGGTGTA+TGG + tig0006056:124053-124072 None:intergenic 35.0%
AAAATCCCTCTTCTCATCAT+AGG + tig0006056:124372-124391 None:intergenic 35.0%
! ATGATGAGAAGAGGGATTTT+AGG - tig0006056:124120-124139 Msa1342900:intron 35.0%
! TGATGAGAAGAGGGATTTTA+GGG - tig0006056:124121-124140 Msa1342900:intron 35.0%
CTAAACCTAGAAACTAGATC+AGG + tig0006056:124217-124236 None:intergenic 35.0%
AGATAGTATTAATGCGGATC+TGG - tig0006056:124279-124298 Msa1342900:intron 35.0%
GTTTCAGCTTCATTTCTGTT+TGG - tig0006056:124475-124494 Msa1342900:intron 35.0%
ATGGTTGTACTGCAATTCTA+GGG + tig0006056:124588-124607 None:intergenic 35.0%
TATGGTTGTACTGCAATTCT+AGG + tig0006056:124589-124608 None:intergenic 35.0%
GTTTGAAAACTATACACGAC+TGG + tig0006056:124651-124670 None:intergenic 35.0%
! TCATTTTCTCCATCAACTGT+GGG - tig0006056:124769-124788 Msa1342900:intron 35.0%
CAAACTAGAGGATGCTTATT+GGG + tig0006056:124826-124845 None:intergenic 35.0%
TCAAACTAGAGGATGCTTAT+TGG + tig0006056:124827-124846 None:intergenic 35.0%
!! TTAGTATCCGCTATTTCTAG+TGG - tig0006056:124910-124929 Msa1342900:intron 35.0%
CGAAAGTTATTGTACTCTTC+CGG - tig0006056:124942-124961 Msa1342900:intron 35.0%
ATAATGTGTGAAGTCTGTAC+CGG + tig0006056:124964-124983 None:intergenic 35.0%
GTATTTCACAAACATCGGTA+TGG - tig0006056:124995-125014 Msa1342900:intron 35.0%
CAATTAAGCTATTCACCTTG+AGG - tig0006056:125048-125067 Msa1342900:intron 35.0%
! AGGACAGGGTTAATGTTTTT+GGG - tig0006056:125068-125087 Msa1342900:intron 35.0%
TGTATTGCCTATGAATGAAG+AGG - tig0006056:125167-125186 Msa1342900:intron 35.0%
GTATTGCCTATGAATGAAGA+GGG - tig0006056:125168-125187 Msa1342900:intron 35.0%
!! CATTTGGTGCTAATTAGAAC+TGG - tig0006056:125205-125224 Msa1342900:intron 35.0%
CATAAAGTTATGTAGATCCC+TGG + tig0006056:125262-125281 None:intergenic 35.0%
! TGCACTGATATGATAGAAAG+CGG + tig0006056:125308-125327 None:intergenic 35.0%
TTATACAAGCTTCATCGAGT+TGG - tig0006056:125355-125374 Msa1342900:intron 35.0%
GAGTTGGATTGCATATTTAC+TGG - tig0006056:125371-125390 Msa1342900:intron 35.0%
TTGATTCTGACGCTTTAATC+TGG - tig0006056:125443-125462 Msa1342900:intron 35.0%
!!! ATGTTTTAGCTTTCTTCGCT+AGG - tig0006056:125498-125517 Msa1342900:intron 35.0%
! AGCTAAAGAGTACAACATTG+AGG - tig0006056:125641-125660 Msa1342900:intron 35.0%
! GCTAAAGAGTACAACATTGA+GGG - tig0006056:125642-125661 Msa1342900:intron 35.0%
ACAAGCTAATGTCTTGAGAT+CGG + tig0006056:125731-125750 None:intergenic 35.0%
!! GACATTAGCTTGTTTAGACT+TGG - tig0006056:125738-125757 Msa1342900:intron 35.0%
TCTGAACCTAAAGACATGAA+AGG - tig0006056:125798-125817 Msa1342900:CDS 35.0%
ACAATTATGTCCTCAGAGAT+GGG + tig0006056:125838-125857 None:intergenic 35.0%
AACAATTATGTCCTCAGAGA+TGG + tig0006056:125839-125858 None:intergenic 35.0%
! AAATTTGGGGTAACTATTGG+TGG - tig0006056:125880-125899 Msa1342900:five_prime_UTR 35.0%
TTCTTCTCGTCGTTCTTTCT+TGG + tig0006056:122285-122304 None:intergenic 40.0%
ATGAGAAACCCTAACTAACC+TGG + tig0006056:122440-122459 None:intergenic 40.0%
ATCAAAATTTCGCGTCTGCT+AGG - tig0006056:122515-122534 Msa1342900:CDS 40.0%
TCAAAATTTCGCGTCTGCTA+GGG - tig0006056:122516-122535 Msa1342900:CDS 40.0%
GTGTTAGGTATCACAGAACT+AGG - tig0006056:122592-122611 Msa1342900:intron 40.0%
!!! GATTGTGTGCCTTTTAGAGT+TGG - tig0006056:122665-122684 Msa1342900:intron 40.0%
!!! TGCCTTTTAGAGTTGGGAAT+GGG - tig0006056:122672-122691 Msa1342900:intron 40.0%
TTCCCATTCCCAACTCTAAA+AGG + tig0006056:122677-122696 None:intergenic 40.0%
! AACGAGAGGTTATTGCTGTT+TGG - tig0006056:122715-122734 Msa1342900:intron 40.0%
!! ACGAGAGGTTATTGCTGTTT+GGG - tig0006056:122716-122735 Msa1342900:intron 40.0%
GGGCCGTTTATTTCAATATG+CGG - tig0006056:122736-122755 Msa1342900:intron 40.0%
!! GGGTTTTCACGATTTTGATC+GGG + tig0006056:122858-122877 None:intergenic 40.0%
! TGTTTGCATGCGATTTTGCA+CGG + tig0006056:122930-122949 None:intergenic 40.0%
GCAGTAGCATGGATCAATTA+AGG + tig0006056:123148-123167 None:intergenic 40.0%
TCCATGCTACTGCAATAGAT+TGG - tig0006056:123155-123174 Msa1342900:intron 40.0%
TGACTGAGTTTGTCTGTTAG+AGG - tig0006056:123235-123254 Msa1342900:intron 40.0%
GAGCGTGTTGAAGAAAAAGA+AGG - tig0006056:123548-123567 Msa1342900:intron 40.0%
!!! TCTCTCATGTTTTTTGGGCT+TGG - tig0006056:123610-123629 Msa1342900:intron 40.0%
CTCATGTAAGGATTTACTCG+AGG - tig0006056:123809-123828 Msa1342900:intron 40.0%
TGTTGCCTATGATGAGAAGA+GGG - tig0006056:124112-124131 Msa1342900:intron 40.0%
! ACAGAAAGTATGCAAATCCG+AGG + tig0006056:124178-124197 None:intergenic 40.0%
! CTCAACCTGATCTAGTTTCT+AGG - tig0006056:124209-124228 Msa1342900:intron 40.0%
AATCCCTCTTCTCATCATAG+TGG - tig0006056:124374-124393 Msa1342900:intron 40.0%
! CTGTTTGGCTTAGACAAAAC+CGG - tig0006056:124490-124509 Msa1342900:intron 40.0%
! CTCATTTTCTCCATCAACTG+TGG - tig0006056:124768-124787 Msa1342900:intron 40.0%
!! ATTGGGAAAAGTGCTGTCTA+CGG + tig0006056:124809-124828 None:intergenic 40.0%
! ATCCTCTAGTTTGATCACTG+AGG - tig0006056:124833-124852 Msa1342900:intron 40.0%
CATGACACCACTAGAAATAG+CGG + tig0006056:124920-124939 None:intergenic 40.0%
!! GCTATTTCTAGTGGTGTCAT+GGG - tig0006056:124919-124938 Msa1342900:intron 40.0%
AAACATTAACCCTGTCCTCA+AGG + tig0006056:125066-125085 None:intergenic 40.0%
! GAGGACAGGGTTAATGTTTT+TGG - tig0006056:125067-125086 Msa1342900:intron 40.0%
!!! ACAGGGTTAATGTTTTTGGG+TGG - tig0006056:125071-125090 Msa1342900:intron 40.0%
!!! CAGGGTTAATGTTTTTGGGT+GGG - tig0006056:125072-125091 Msa1342900:intron 40.0%
!!! AGGGTTAATGTTTTTGGGTG+GGG - tig0006056:125073-125092 Msa1342900:intron 40.0%
TCAATGCCCTCTTCATTCAT+AGG + tig0006056:125177-125196 None:intergenic 40.0%
TGCTAATTAGAACTGGGACT+AGG - tig0006056:125212-125231 Msa1342900:intron 40.0%
! AAAGAGTACAACATTGAGGG+TGG - tig0006056:125645-125664 Msa1342900:intron 40.0%
TTGAGGGGTGGTAATTAGTA+AGG - tig0006056:125693-125712 Msa1342900:intron 40.0%
!! CTTGGTCACTTTCTAGTTCT+TGG - tig0006056:125756-125775 Msa1342900:CDS 40.0%
GAGCTTCCTTTCATGTCTTT+AGG + tig0006056:125807-125826 None:intergenic 40.0%
GATGCGGAGTATGGGTAATT+GGG + tig0006056:122198-122217 None:intergenic 45.0%
CTCGAGAGTGATAGTCTTTC+CGG + tig0006056:122376-122395 None:intergenic 45.0%
! GCCAAGATCCAGGTTAGTTA+GGG - tig0006056:122429-122448 Msa1342900:three_prime_UTR 45.0%
ACCCTAACTAACCTGGATCT+TGG + tig0006056:122433-122452 None:intergenic 45.0%
!!! GTGCCTTTTAGAGTTGGGAA+TGG - tig0006056:122671-122690 Msa1342900:intron 45.0%
!! AGTGCTGGCTGATGACTATT+AGG + tig0006056:122769-122788 None:intergenic 45.0%
TTGATCGGGATTTGACAGCA+AGG + tig0006056:122844-122863 None:intergenic 45.0%
ACTCAACTCAGCATCAGTAG+CGG + tig0006056:122902-122921 None:intergenic 45.0%
GCCAATCTATTGCAGTAGCA+TGG + tig0006056:123159-123178 None:intergenic 45.0%
AAAATCAACCTCTGCTGGTC+AGG + tig0006056:123353-123372 None:intergenic 45.0%
! GATTTTCGCTGGTAAGCAAC+TGG - tig0006056:123367-123386 Msa1342900:intron 45.0%
GTGTTGCCTATGATGAGAAG+AGG - tig0006056:124111-124130 Msa1342900:intron 45.0%
CCACCACTATGATGAGAAGA+GGG + tig0006056:124380-124399 None:intergenic 45.0%
CCTCTTCTCATCATAGTGGT+GGG - tig0006056:124378-124397 Msa1342900:intron 45.0%
TTTGCACCACGATGAATCAG+AGG + tig0006056:124405-124424 None:intergenic 45.0%
TTCATCGTGGTGCAAAGCAT+CGG - tig0006056:124409-124428 Msa1342900:intron 45.0%
GAAACTGATGAACAACACCG+AGG + tig0006056:124444-124463 None:intergenic 45.0%
! GGAGTATTTCCCACAGTTGA+TGG + tig0006056:124781-124800 None:intergenic 45.0%
CTCCTCAGTGATCAAACTAG+AGG + tig0006056:124838-124857 None:intergenic 45.0%
!! CGCTATTTCTAGTGGTGTCA+TGG - tig0006056:124918-124937 Msa1342900:intron 45.0%
AAGCTATTCACCTTGAGGAC+AGG - tig0006056:125053-125072 Msa1342900:intron 45.0%
AGCTATTCACCTTGAGGACA+GGG - tig0006056:125054-125073 Msa1342900:intron 45.0%
!!! GGGTTAATGTTTTTGGGTGG+GGG - tig0006056:125074-125093 Msa1342900:intron 45.0%
!! TGAATGAAGAGGGCATTGAG+AGG - tig0006056:125178-125197 Msa1342900:intron 45.0%
!! GAATGAAGAGGGCATTGAGA+GGG - tig0006056:125179-125198 Msa1342900:intron 45.0%
!! TTCACTTGGTGCTTGCATTG+AGG - tig0006056:125676-125695 Msa1342900:intron 45.0%
!! TCACTTGGTGCTTGCATTGA+GGG - tig0006056:125677-125696 Msa1342900:intron 45.0%
!!! ATTTTTTTTCTTAATTATAT+TGG - tig0006056:125541-125560 Msa1342900:intron 5.0%
CGATGCGGAGTATGGGTAAT+TGG + tig0006056:122199-122218 None:intergenic 50.0%
GTTTGAGCGATGCGGAGTAT+GGG + tig0006056:122206-122225 None:intergenic 50.0%
AGTTTGAGCGATGCGGAGTA+TGG + tig0006056:122207-122226 None:intergenic 50.0%
! TTGTGAGAGCGCGATAGAGA+CGG + tig0006056:122260-122279 None:intergenic 50.0%
CGGAAAGACTATCACTCTCG+AGG - tig0006056:122374-122393 Msa1342900:three_prime_UTR 50.0%
! GGCCAAGATCCAGGTTAGTT+AGG - tig0006056:122428-122447 Msa1342900:three_prime_UTR 50.0%
CAGCGAAAATCAACCTCTGC+TGG + tig0006056:123358-123377 None:intergenic 50.0%
!! CAGCAGAGGTTGATTTTCGC+TGG - tig0006056:123356-123375 Msa1342900:intron 50.0%
GCTGGTAAGCAACTGGAAGA+TGG - tig0006056:123374-123393 Msa1342900:intron 50.0%
CAACTCTTCACTTGGTCCTG+AGG - tig0006056:123432-123451 Msa1342900:intron 50.0%
GGATTTACTCGAGGATCACG+TGG - tig0006056:123818-123837 Msa1342900:intron 50.0%
CCCTCTTCTCATCATAGTGG+TGG - tig0006056:124377-124396 Msa1342900:intron 50.0%
CCCACCACTATGATGAGAAG+AGG + tig0006056:124381-124400 None:intergenic 50.0%
! AGCATCGGAGTTCTGTTCCT+CGG - tig0006056:124424-124443 Msa1342900:intron 50.0%
!! TTGGGTGGGGGAGTATTGAT+AGG - tig0006056:125086-125105 Msa1342900:intron 50.0%
! GGCATTGAGAGGGAGTCATT+TGG - tig0006056:125189-125208 Msa1342900:intron 50.0%
!! CACCTGTTGTAACTTGCTGC+AGG - tig0006056:125580-125599 Msa1342900:intron 50.0%
AGCCTGCAGCAAGTTACAAC+AGG + tig0006056:125585-125604 None:intergenic 50.0%
TGCTGCAGGCTCATATATGC+TGG - tig0006056:125594-125613 Msa1342900:intron 50.0%
!! CACTTGGTGCTTGCATTGAG+GGG - tig0006056:125678-125697 Msa1342900:intron 50.0%
TCTATACTCGCCCATCTCTG+AGG - tig0006056:125825-125844 Msa1342900:exon 50.0%
GAGCGCGATAGAGACGGAAA+GGG + tig0006056:122254-122273 None:intergenic 55.0%
AGAGCGCGATAGAGACGGAA+AGG + tig0006056:122255-122274 None:intergenic 55.0%
CGACACCATCGACAACGTCA+AGG - tig0006056:122407-122426 Msa1342900:three_prime_UTR 55.0%
!! CTTGGCCTTGACGTTGTCGA+TGG + tig0006056:122415-122434 None:intergenic 55.0%
CAACGTCAAGGCCAAGATCC+AGG - tig0006056:122419-122438 Msa1342900:three_prime_UTR 55.0%
TCAACCTCTGCTGGTCAGGA+GGG + tig0006056:123349-123368 None:intergenic 55.0%
ATCAACCTCTGCTGGTCAGG+AGG + tig0006056:123350-123369 None:intergenic 55.0%
TTCACTTGGTCCTGAGGCTC+AGG - tig0006056:123438-123457 Msa1342900:intron 55.0%
TCACTTGGTCCTGAGGCTCA+GGG - tig0006056:123439-123458 Msa1342900:intron 55.0%
GAATTCCACCTGTGCAGCAG+AGG - tig0006056:123570-123589 Msa1342900:intron 55.0%
!! AGAGAGTACCTCTGCTGCAC+AGG + tig0006056:123581-123600 None:intergenic 55.0%
ACTCGAGGATCACGTGGTCT+AGG - tig0006056:123824-123843 Msa1342900:intron 55.0%
GTGGGTCCTCTGATTCATCG+TGG - tig0006056:124396-124415 Msa1342900:intron 55.0%
!! AAAGTGCTGTCTACGGCGGA+TGG + tig0006056:124802-124821 None:intergenic 55.0%
!! GGGAAAAGTGCTGTCTACGG+CGG + tig0006056:124806-124825 None:intergenic 55.0%
! GGGTGGTTCTGTGCTTCACT+TGG - tig0006056:125662-125681 Msa1342900:intron 55.0%
! TTGGTGCTTGCATTGAGGGG+TGG - tig0006056:125681-125700 Msa1342900:intron 55.0%
CACTTGGTCCTGAGGCTCAG+GGG - tig0006056:123440-123459 Msa1342900:intron 60.0%
GAGTACCTCTGCTGCACAGG+TGG + tig0006056:123578-123597 None:intergenic 60.0%
GCATCCCTCCTGACCAGCAG+AGG - tig0006056:123342-123361 Msa1342900:intron 65.0%
TTGGTCCTGAGGCTCAGGGG+AGG - tig0006056:123443-123462 Msa1342900:intron 65.0%
TGGTTCCTCCCCTGAGCCTC+AGG + tig0006056:123451-123470 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0006056 gene 122175 126013 122175 ID=Msa1342900;Name=Msa1342900
tig0006056 mRNA 122175 126013 122175 ID=Msa1342900-mRNA-1;Parent=Msa1342900;Name=Msa1342900-mRNA-1;_AED=0.14;_eAED=0.14;_QI=173|0.5|0.66|1|1|1|3|303|90
tig0006056 exon 122175 122586 122175 ID=Msa1342900-mRNA-1:exon:3914;Parent=Msa1342900-mRNA-1
tig0006056 exon 124597 124667 124597 ID=Msa1342900-mRNA-1:exon:3913;Parent=Msa1342900-mRNA-1
tig0006056 exon 125748 126013 125748 ID=Msa1342900-mRNA-1:exon:3912;Parent=Msa1342900-mRNA-1
tig0006056 five_prime_UTR 125841 126013 125841 ID=Msa1342900-mRNA-1:five_prime_utr;Parent=Msa1342900-mRNA-1
tig0006056 CDS 125748 125840 125748 ID=Msa1342900-mRNA-1:cds;Parent=Msa1342900-mRNA-1
tig0006056 CDS 124597 124667 124597 ID=Msa1342900-mRNA-1:cds;Parent=Msa1342900-mRNA-1
tig0006056 CDS 122478 122586 122478 ID=Msa1342900-mRNA-1:cds;Parent=Msa1342900-mRNA-1
tig0006056 three_prime_UTR 122175 122477 122175 ID=Msa1342900-mRNA-1:three_prime_utr;Parent=Msa1342900-mRNA-1
Gene Sequence

>Msa1342900

ATGCAGATCTTCGTCAAAACTTTGACCGGAAAGACTATCACTCTCGAGGTTGAGAGTAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGCCAACTGATACAATTGATCGTATCAAGGAGCGTGTTGAAGAAAAAGAAGGAATTCCACCTGTGCAGCAGAGGCTCATATATGCTGGTAAGCAGCTTGCTGATGACAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCTGTGCTTCACTTGGTGCTTGCATTGAGGGGTGGTAATTAG
Protein sequence

>Msa1342900

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGN*