AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264460 MtrunA17_Chr2g0328331 89.133 727 23 3 1 671 1 727 0.0 1312
Msa0264460 MtrunA17_Chr3g0111941 39.407 472 214 9 248 670 183 631 3.05e-84 278
Msa0264460 MtrunA17_Chr5g0435351 39.789 475 197 11 252 663 157 605 3.50e-77 258
Msa0264460 MtrunA17_Chr7g0238741 39.865 444 173 12 269 654 196 603 1.77e-72 246
Msa0264460 MtrunA17_Chr7g0238741 41.346 104 50 4 1 98 1 99 1.09e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264460 AT1G07540.1 47.971 419 148 13 283 658 225 616 2.74e-93 302
Msa0264460 AT1G07540.1 56.140 57 24 1 1 57 1 56 5.56e-11 66.2
Msa0264460 AT3G12560.1 40.167 478 194 10 230 658 163 597 3.83e-87 285
Msa0264460 AT3G12560.2 40.167 478 194 10 230 658 163 597 3.83e-87 285
Msa0264460 AT3G46590.5 44.420 448 167 18 243 653 93 495 2.25e-86 280
Msa0264460 AT3G46590.2 44.420 448 167 18 243 653 134 536 6.71e-86 280
Msa0264460 AT3G46590.1 44.420 448 167 18 243 653 133 535 8.59e-86 280
Msa0264460 AT3G46590.3 43.527 448 165 17 243 653 134 530 2.18e-84 276
Msa0264460 AT5G13820.2 37.938 485 221 12 240 671 177 634 2.30e-78 263
Msa0264460 AT5G13820.1 37.938 485 221 12 240 671 177 634 2.30e-78 263
Msa0264460 AT5G59430.3 41.215 461 168 18 241 654 148 552 3.66e-75 252
Msa0264460 AT5G59430.4 40.830 458 168 18 241 651 147 548 9.98e-73 246
Msa0264460 AT5G59430.2 40.830 458 168 18 241 651 148 549 1.18e-72 246
Msa0264460 AT5G59430.1 40.830 458 168 18 241 651 148 549 1.18e-72 246
Msa0264460 AT5G59430.5 40.830 458 168 18 241 651 148 549 1.18e-72 246
Msa0264460 AT3G46590.4 45.018 271 107 12 243 509 134 366 9.60e-47 171
Msa0264460 AT3G53790.1 40.520 269 84 6 424 651 163 396 1.18e-46 170

Find 167 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTGATCATTTCTTATTT+TGG 0.137908 2_2:+64405139 Msa0264460:five_prime_UTR
TCAATTAGCAAGCCCTTTAT+TGG 0.167282 2_2:-64409162 None:intergenic
GAATATTCATTTGAGATATT+TGG 0.208514 2_2:-64406453 None:intergenic
TAAAGTAGAAGGCAAGTTTC+AGG 0.226508 2_2:-64408844 None:intergenic
ATTACTAGTAAAGTTGAATT+AGG 0.235538 2_2:+64405852 Msa0264460:CDS
GGCTATTTCTTGTAAGTAAA+TGG 0.236955 2_2:+64409132 Msa0264460:three_prime_UTR
GCCTGTTCCTCAAGAACTTT+TGG 0.237700 2_2:+64408750 Msa0264460:CDS
TCTCAGTTCGCTTTGGCTTC+TGG 0.241253 2_2:-64407799 None:intergenic
GAAGCAACAGTTGCAGTTTC+AGG 0.244154 2_2:-64406917 None:intergenic
TGAACCTGCCAGTCTCAATT+TGG 0.246532 2_2:-64405094 None:intergenic
AGGAATAGTTACAAGTTCTT+TGG 0.254884 2_2:-64407738 None:intergenic
TCCACTTCGGCAACAGAAAA+AGG 0.257262 2_2:-64407848 None:intergenic
AGTCCCTCCGTATCCATTTC+AGG 0.264251 2_2:-64407758 None:intergenic
AATGTGTGCGATTGACTTAT+TGG 0.277403 2_2:+64405401 Msa0264460:CDS
ATTTGATAATGCAGGATAAA+TGG 0.287402 2_2:+64408677 Msa0264460:intron
GGTAAGCTTTGCGAAGAATT+AGG 0.294244 2_2:-64407182 None:intergenic
TTATGGATTTGTTGGCTATC+AGG 0.301924 2_2:+64405200 Msa0264460:CDS
TGATAACCAGCTGGATGCTT+TGG 0.304017 2_2:+64407145 Msa0264460:CDS
GCTTCCAAGGATGACTTTCC+AGG 0.307385 2_2:-64406712 None:intergenic
CATCAAATGAATCGAAATTT+CGG 0.310457 2_2:-64403979 None:intergenic
ACTATGGTTCTTTCCCTGTT+TGG 0.311608 2_2:+64409106 Msa0264460:three_prime_UTR
AGGATAGATTATGGATTTGT+TGG 0.319703 2_2:+64405192 Msa0264460:CDS
ATTGGTTTGGTTAGGTGTTA+AGG 0.324737 2_2:+64408915 Msa0264460:three_prime_UTR
TGAATGGTTTGTTTGCATCT+AGG 0.330283 2_2:-64405524 None:intergenic
AAATGGTTTATATCCAATAA+AGG 0.331893 2_2:+64409149 Msa0264460:three_prime_UTR
TTGCCTTCTACTTTAATATG+AGG 0.339068 2_2:+64408852 Msa0264460:exon
CTGTCACAACTAGCTTCATT+AGG 0.344968 2_2:-64405558 None:intergenic
GTATAGGTGATCAAAGAATA+AGG 0.363994 2_2:+64406198 Msa0264460:CDS
AAGAAATAGCCTCTCCAAAC+AGG 0.368417 2_2:-64409120 None:intergenic
AATTCGCATCTTGAAATTGA+TGG 0.376266 2_2:+64405729 Msa0264460:CDS
TTGGCATGGTTTCTGAGATA+TGG 0.379971 2_2:+64405158 Msa0264460:exon
CCTTGATTCGTGTCATTGTT+GGG 0.381125 2_2:-64406559 None:intergenic
CCTCAAGCGCCAATAGGTTT+AGG 0.381466 2_2:+64406017 Msa0264460:CDS
ATGTGAGATCGGGGTAAATT+CGG 0.382494 2_2:-64403942 None:intergenic
TCCAAAAGTTCTTGAGGAAC+AGG 0.384204 2_2:-64408751 None:intergenic
GATAACCAGCTGGATGCTTT+GGG 0.385054 2_2:+64407146 Msa0264460:CDS
GGTGGCAATGCCAAGTTGTC+GGG 0.385312 2_2:+64406038 Msa0264460:CDS
AATGGTTTATATCCAATAAA+GGG 0.385969 2_2:+64409150 Msa0264460:three_prime_UTR
ACTTGTAACTATTCCTGAAA+TGG 0.387283 2_2:+64407745 Msa0264460:CDS
CGCTTTGGCTTCTGGTTCAC+TGG 0.388587 2_2:-64407791 None:intergenic
CCTTCTTCTATCAATACATT+AGG 0.390584 2_2:+64407695 Msa0264460:CDS
CATCTCTAAGTTTCTTTCCA+TGG 0.391295 2_2:-64407088 None:intergenic
GCATTGCCACCTAAACCTAT+TGG 0.392718 2_2:-64406026 None:intergenic
GCGCAGAAGAGGATAGATTA+TGG 0.397692 2_2:+64405183 Msa0264460:CDS
GTTGCTTTGTTTGTTGCTGT+TGG 0.399464 2_2:-64408804 None:intergenic
TGCAACTGTTGCTTCCTTGA+AGG 0.401829 2_2:+64406925 Msa0264460:CDS
AGTAAAACTCTACTTCAAAC+TGG 0.401926 2_2:+64407113 Msa0264460:CDS
CATTATCCTTGCTCACACTA+TGG 0.402352 2_2:+64409090 Msa0264460:three_prime_UTR
TCCTCACTGCTCATGCATAT+TGG 0.404954 2_2:+64408779 Msa0264460:CDS
TTCATGCAAAATGTGAGATC+GGG 0.405879 2_2:-64403952 None:intergenic
AACTCCACTTCAAATTCTAA+TGG 0.407925 2_2:+64406505 Msa0264460:CDS
AAAGATTGGCTTCTAAATAT+CGG 0.408174 2_2:+64406222 Msa0264460:CDS
TATACAATTCTTTGATCTAA+AGG 0.408351 2_2:-64406180 None:intergenic
CGTGTGGCACGCGGCTTTGT+TGG 0.410650 2_2:-64405225 None:intergenic
TTCAACGACTTATTTGCATC+CGG 0.411417 2_2:-64405615 None:intergenic
TTGCTTTGTTTGTTGCTGTT+GGG 0.413177 2_2:-64408803 None:intergenic
TTTAGATCAAAGAATTGTAT+AGG 0.421024 2_2:+64406182 Msa0264460:CDS
TGTGAGATCTCAGTTCGCTT+TGG 0.423608 2_2:-64407806 None:intergenic
TGGTCCACAGAAAGCAGTTA+TGG 0.424624 2_2:+64407016 Msa0264460:intron
GGATGCTTTGGGCTTCACCT+TGG 0.427101 2_2:+64407157 Msa0264460:CDS
GATCCGTCACCAGGTGTGAT+TGG 0.433742 2_2:-64405465 None:intergenic
CTTTGTAGATTGGTTTGGTT+AGG 0.439650 2_2:+64408907 Msa0264460:three_prime_UTR
ATCTACAAAGTCACATCATA+TGG 0.440519 2_2:-64408894 None:intergenic
GCTTCAACACAGATTTGTTA+AGG 0.440987 2_2:+64405584 Msa0264460:CDS
ACCTTGATTCGTGTCATTGT+TGG 0.442882 2_2:-64406560 None:intergenic
CAATAAAGTGCCGGCGGCTA+CGG 0.444859 2_2:-64405427 None:intergenic
GAGGTTGGTTGCTGACGTTT+TGG 0.452923 2_2:+64405797 Msa0264460:CDS
AGGTGGCAATGCCAAGTTGT+CGG 0.455271 2_2:+64406037 Msa0264460:CDS
AAAGTAGAAGGCAAGTTTCA+GGG 0.459532 2_2:-64408843 None:intergenic
ATCTTTGAAGATAATTCTGT+GGG 0.461137 2_2:+64404013 Msa0264460:five_prime_UTR
AACATGCCTCTATCTTTACT+AGG 0.462368 2_2:+64407248 Msa0264460:CDS
AAAGTTGAATTAGGATCCTC+TGG 0.471052 2_2:+64405861 Msa0264460:CDS
GTGTTTCTTGTTCATCATCT+CGG 0.472466 2_2:+64406581 Msa0264460:CDS
TTAGGAAGCTCGGCTTTGAA+TGG 0.472558 2_2:-64405540 None:intergenic
AAGTTGCAATCACTACAATC+TGG 0.484938 2_2:-64405888 None:intergenic
GTGTTAAGGTTTCTGACCCT+TGG 0.485722 2_2:+64408929 Msa0264460:three_prime_UTR
TGCCTTCTACTTTAATATGA+GGG 0.487747 2_2:+64408853 Msa0264460:exon
CAAGGAAGAAAGTGAAGCAT+AGG 0.488785 2_2:+64409052 Msa0264460:three_prime_UTR
GTACCAATCGGTACTGCGAC+TGG 0.489310 2_2:+64405960 Msa0264460:CDS
TGTGACTTTGTAGATTGGTT+TGG 0.490365 2_2:+64408902 Msa0264460:three_prime_UTR
TATGATGTGACTTTGTAGAT+TGG 0.490431 2_2:+64408897 Msa0264460:three_prime_UTR
TCAAAGAATAAGGAAAAGAT+TGG 0.490559 2_2:+64406208 Msa0264460:CDS
GGCTCACCTCTTCTTTGTTG+AGG 0.499211 2_2:-64408730 None:intergenic
ATGCTGTGTTGAGGAACTAA+TGG 0.499819 2_2:+64405986 Msa0264460:CDS
ATTCATGCAAAATGTGAGAT+CGG 0.501354 2_2:-64403953 None:intergenic
CAACACAGATTTGTTAAGGA+AGG 0.505360 2_2:+64405588 Msa0264460:CDS
GATCAAATCATTTAAAGTGC+CGG 0.507969 2_2:+64406877 Msa0264460:CDS
CCTTTGAACAACGAGCTACT+AGG 0.508550 2_2:-64406077 None:intergenic
GCTTCCAAATTGAGACTGGC+AGG 0.513366 2_2:+64405090 Msa0264460:five_prime_UTR
CCTAGTAGCTCGTTGTTCAA+AGG 0.513868 2_2:+64406077 Msa0264460:CDS
CCTTCTACTTTAATATGAGG+GGG 0.515655 2_2:+64408855 Msa0264460:exon
CACAACGCCGCCGAATTCGC+AGG 0.516918 2_2:+64407825 Msa0264460:CDS
CCTAATGTATTGATAGAAGA+AGG 0.520168 2_2:-64407695 None:intergenic
ATCGTTATACCCCGACAACT+TGG 0.520649 2_2:-64406048 None:intergenic
CCCAACAATGACACGAATCA+AGG 0.522512 2_2:+64406559 Msa0264460:CDS
GAAGATAATTCTGTGGGGAA+AGG 0.524396 2_2:+64404019 Msa0264460:five_prime_UTR
CATTACCCTAGTAAAGATAG+AGG 0.525106 2_2:-64407254 None:intergenic
TCAACGACTTATTTGCATCC+GGG 0.528602 2_2:-64405614 None:intergenic
TAAAGTGCCGGCGGCTACGG+TGG 0.530670 2_2:-64405424 None:intergenic
TTTCTCTTGCAATAAAGTGC+CGG 0.532184 2_2:-64405436 None:intergenic
CGAGTTGGTATGATTCTCCA+TGG 0.533773 2_2:+64407071 Msa0264460:CDS
ATTTGTTAAGGAAGGTTGCC+CGG 0.534918 2_2:+64405596 Msa0264460:CDS
GCCTTCTACTTTAATATGAG+GGG 0.535220 2_2:+64408854 Msa0264460:exon
AAGGAAGAAAGTGAAGCATA+GGG 0.535836 2_2:+64409053 Msa0264460:three_prime_UTR
AACTATTCCTGAAATGGATA+CGG 0.538330 2_2:+64407751 Msa0264460:CDS
AAATCTGAAAAGGTACCAAT+CGG 0.539431 2_2:+64405948 Msa0264460:CDS
TGTTGATGTAAGTAAAGTAA+AGG 0.539535 2_2:+64405914 Msa0264460:CDS
CCTAAACCTATTGGCGCTTG+AGG 0.542181 2_2:-64406017 None:intergenic
CTGATGACGTAAGTAGTGAC+AGG 0.544616 2_2:+64405649 Msa0264460:CDS
GCAGTGACTACTCTACTTCA+AGG 0.546517 2_2:+64407041 Msa0264460:CDS
GGTTCTTTCCCTGTTTGGAG+AGG 0.549088 2_2:+64409111 Msa0264460:three_prime_UTR
ACTAGCTTCATTAGGAAGCT+CGG 0.549702 2_2:-64405550 None:intergenic
GATCTTTGAAGATAATTCTG+TGG 0.555472 2_2:+64404012 Msa0264460:five_prime_UTR
TGTTGCCGAAGTGGAAGCAC+TGG 0.564610 2_2:+64407856 Msa0264460:CDS
AATTTCTCATGATAACCAGC+TGG 0.565236 2_2:+64407136 Msa0264460:CDS
ATTTCCATTAGAATTTGAAG+TGG 0.566306 2_2:-64406509 None:intergenic
TCAGGCTTCCAAATTGAGAC+TGG 0.566330 2_2:+64405086 Msa0264460:intron
TCAACATGGATTCGTTAAAG+AGG 0.566359 2_2:+64405500 Msa0264460:CDS
CTTCAAGGTGGATTGCGAGT+TGG 0.570784 2_2:+64407056 Msa0264460:CDS
TCTAATGGAAATATCAGAAG+TGG 0.571057 2_2:+64406520 Msa0264460:CDS
GAGATATGGTGGCGCAGAAG+AGG 0.575112 2_2:+64405172 Msa0264460:exon
AGATCCTGGAAAGTCATCCT+TGG 0.577146 2_2:+64406708 Msa0264460:intron
TGAAGCCCAAAGCATCCAGC+TGG 0.587306 2_2:-64407151 None:intergenic
CAACATGGATTCGTTAAAGA+GGG 0.588442 2_2:+64405501 Msa0264460:CDS
ATATCTCCTCAACAAAGAAG+AGG 0.590679 2_2:+64408724 Msa0264460:CDS
GCAGGATAAATGGAAAACAT+TGG 0.595370 2_2:+64408687 Msa0264460:intron
ACCCTATCCAAAAGTTCTTG+AGG 0.596914 2_2:-64408757 None:intergenic
GCGTGCCACACGATCACCTA+GGG 0.598126 2_2:+64405236 Msa0264460:CDS
TTACGATCTAAAGATTCTCA+TGG 0.598425 2_2:+64406751 Msa0264460:CDS
TCATCATCTCGGATGCGCAA+AGG 0.599031 2_2:+64406592 Msa0264460:CDS
AAAGAACCATAGTGTGAGCA+AGG 0.599354 2_2:-64409096 None:intergenic
ACTTACGTCATCAGAAAGCT+CGG 0.600372 2_2:-64405640 None:intergenic
CTAGGTGATCGTGTGGCACG+CGG 0.600422 2_2:-64405234 None:intergenic
CGGTCAAAATCACTATTCGA+AGG 0.601638 2_2:+64405704 Msa0264460:CDS
GACTGGAGCATGCTGTGTTG+AGG 0.602494 2_2:+64405977 Msa0264460:CDS
TTGCGAAGAATTAGGCTCCA+AGG 0.603627 2_2:-64407174 None:intergenic
AGAAATAGCCTCTCCAAACA+GGG 0.604751 2_2:-64409119 None:intergenic
GCTCCAGTCGCAGTACCGAT+TGG 0.608866 2_2:-64405963 None:intergenic
CTCTTGCAATAAAGTGCCGG+CGG 0.613646 2_2:-64405433 None:intergenic
TTCAACCAGTGCTTCCACTT+CGG 0.614342 2_2:-64407861 None:intergenic
ATGGAAAACATTGGTACACA+CGG 0.617941 2_2:+64408696 Msa0264460:CDS
ATGAAGCTAGTTGTGACAGA+AGG 0.618118 2_2:+64405562 Msa0264460:CDS
AGAGGCATGTTGTCTGCAGT+AGG 0.619918 2_2:-64407236 None:intergenic
AATCCAATCACACCTGGTGA+CGG 0.619982 2_2:+64405462 Msa0264460:CDS
TATTCCTGAAATGGATACGG+AGG 0.621261 2_2:+64407754 Msa0264460:CDS
GCATGGTTTCTGAGATATGG+TGG 0.624102 2_2:+64405161 Msa0264460:exon
ACATGCCTCTATCTTTACTA+GGG 0.625348 2_2:+64407249 Msa0264460:CDS
CACGATACACTTGCTAACAA+TGG 0.629282 2_2:+64406266 Msa0264460:CDS
TTATTGGCCACCGTAGCCGC+CGG 0.631400 2_2:+64405417 Msa0264460:CDS
AATTGATGGTCACTCATGCA+TGG 0.632522 2_2:+64405743 Msa0264460:CDS
AGAATGACGATATGCTTCCA+AGG 0.635283 2_2:-64406725 None:intergenic
GAATCTTTAGCACATGTGAG+TGG 0.636250 2_2:-64407203 None:intergenic
GGATACATTTCAAAGAAGTG+TGG 0.637536 2_2:+64405368 Msa0264460:CDS
TCATGCAAAATGTGAGATCG+GGG 0.642204 2_2:-64403951 None:intergenic
GTGGCAATGCCAAGTTGTCG+GGG 0.645617 2_2:+64406039 Msa0264460:CDS
CAAGCGCCAATAGGTTTAGG+TGG 0.646070 2_2:+64406020 Msa0264460:CDS
CGCGTGCCACACGATCACCT+AGG 0.652320 2_2:+64405235 Msa0264460:CDS
ATTTACCCTAGGTGATCGTG+TGG 0.652914 2_2:-64405241 None:intergenic
TCCACAGAAAGCAGTTATGG+AGG 0.659363 2_2:+64407019 Msa0264460:intron
ATTCCTGAAATGGATACGGA+GGG 0.670098 2_2:+64407755 Msa0264460:CDS
AAACAGAATCCAATCACACC+TGG 0.670956 2_2:+64405456 Msa0264460:CDS
ACCAATATGCATGAGCAGTG+AGG 0.673172 2_2:-64408780 None:intergenic
TGGCAGGTTCAAGCAACACG+TGG 0.689986 2_2:+64405106 Msa0264460:five_prime_UTR
AGGAAGAAAGTGAAGCATAG+GGG 0.691011 2_2:+64409054 Msa0264460:three_prime_UTR
ACTACAATCTGGATATCCAG+AGG 0.693416 2_2:-64405877 None:intergenic
GTGACTACTCTACTTCAAGG+TGG 0.715265 2_2:+64407044 Msa0264460:CDS
TCTTTGAAGATAATTCTGTG+GGG 0.761234 2_2:+64404014 Msa0264460:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAATTTTAAAAAAGAAAA+TGG - chr2_2:64404810-64404829 None:intergenic 10.0%
!! AATAAATAGATAATAGTAAT+CGG - chr2_2:64405289-64405308 None:intergenic 10.0%
!!! GAATTTATTTAAAACTTATT+TGG + chr2_2:64407952-64407971 Msa0264460:intron 10.0%
!! AAAAAAAAATCTATACAAAA+GGG - chr2_2:64408237-64408256 None:intergenic 10.0%
!! AAAAAAAAAATCTATACAAA+AGG - chr2_2:64408238-64408257 None:intergenic 10.0%
!!! GTATAGATTTTTTTTTTTAT+TGG + chr2_2:64408241-64408260 Msa0264460:intron 10.0%
!!! TATTTGATCATTTCTTATTT+TGG + chr2_2:64405139-64405158 Msa0264460:five_prime_UTR 15.0%
!!! TAGAATTTTTCAATTGTATA+TGG - chr2_2:64406971-64406990 None:intergenic 15.0%
!!! ATCACTTTTTTCTTTTTTTT+GGG + chr2_2:64408984-64409003 Msa0264460:three_prime_UTR 15.0%
!! ATGTAAAAAATTATAGTACA+AGG + chr2_2:64409034-64409053 Msa0264460:three_prime_UTR 15.0%
!!! AACTTTTTTTTTGTTTGTGA+TGG + chr2_2:64403916-64403935 Msa0264460:five_prime_UTR 20.0%
!!! TTTTTTTGTTGAATCTTTGA+TGG + chr2_2:64404045-64404064 Msa0264460:intron 20.0%
!!! TTTTTTGTTGAATCTTTGAT+GGG + chr2_2:64404046-64404065 Msa0264460:intron 20.0%
!!! CAAAAAGTTAGCATATTTTA+AGG - chr2_2:64404084-64404103 None:intergenic 20.0%
!! AGAAAAAAAAAAACTGTTGT+TGG + chr2_2:64404124-64404143 Msa0264460:intron 20.0%
!! GAAAAAAAAAAACTGTTGTT+GGG + chr2_2:64404125-64404144 Msa0264460:intron 20.0%
!! ATACTAAAAAAATAAACCCT+AGG - chr2_2:64404732-64404751 None:intergenic 20.0%
!! ATGATTACAGATATTATCAA+TGG + chr2_2:64404779-64404798 Msa0264460:intron 20.0%
!! TTCAAAATTCAAACACATTA+TGG - chr2_2:64405043-64405062 None:intergenic 20.0%
!! CATTAAAAAAAGTAGTTACA+TGG - chr2_2:64405332-64405351 None:intergenic 20.0%
!!! TAATATTTTTCATTTCACTG+TGG - chr2_2:64405836-64405855 None:intergenic 20.0%
!! ATTACTAGTAAAGTTGAATT+AGG + chr2_2:64405852-64405871 Msa0264460:CDS 20.0%
!! TATACAATTCTTTGATCTAA+AGG - chr2_2:64406183-64406202 None:intergenic 20.0%
!! TTTAGATCAAAGAATTGTAT+AGG + chr2_2:64406182-64406201 Msa0264460:CDS 20.0%
!!! GAATATTCATTTGAGATATT+TGG - chr2_2:64406456-64406475 None:intergenic 20.0%
!!! ATAATTTTATTGTACCTTCA+AGG - chr2_2:64406942-64406961 None:intergenic 20.0%
!! AAATCAAGAGAATAATATTC+AGG + chr2_2:64407558-64407577 Msa0264460:intron 20.0%
!! ACTAACATTTGCATAATATT+TGG + chr2_2:64407987-64408006 Msa0264460:intron 20.0%
!!! TGATTTTTTTAATGACACAT+TGG - chr2_2:64408133-64408152 None:intergenic 20.0%
!!! AATGTGTCATTAAAAAAATC+AGG + chr2_2:64408132-64408151 Msa0264460:intron 20.0%
!! TAGAACAACTAATTTACATT+TGG - chr2_2:64408358-64408377 None:intergenic 20.0%
!!! AATCAACAAAAAAGCATAAA+TGG - chr2_2:64408426-64408445 None:intergenic 20.0%
!! TGTCCTTATAATAGAAAAAA+TGG + chr2_2:64408632-64408651 Msa0264460:intron 20.0%
!!! CAACCATTTTTTCTATTATA+AGG - chr2_2:64408638-64408657 None:intergenic 20.0%
!! CTTATAATAGAAAAAATGGT+TGG + chr2_2:64408636-64408655 Msa0264460:intron 20.0%
!!! CATCACTTTTTTCTTTTTTT+TGG + chr2_2:64408983-64409002 Msa0264460:three_prime_UTR 20.0%
!! AAATGGTTTATATCCAATAA+AGG + chr2_2:64409149-64409168 Msa0264460:three_prime_UTR 20.0%
!! AATGGTTTATATCCAATAAA+GGG + chr2_2:64409150-64409169 Msa0264460:three_prime_UTR 20.0%
! CATCAAATGAATCGAAATTT+CGG - chr2_2:64403982-64404001 None:intergenic 25.0%
!! ATCTTTGAAGATAATTCTGT+GGG + chr2_2:64404013-64404032 Msa0264460:five_prime_UTR 25.0%
!!! TTTTGTTTTGTGTTGTTGTT+TGG + chr2_2:64404419-64404438 Msa0264460:intron 25.0%
! TATACCAATTATTACTCCTA+GGG + chr2_2:64404713-64404732 Msa0264460:intron 25.0%
!! CAGTAATTGTTGTTGAATTT+AGG + chr2_2:64404846-64404865 Msa0264460:intron 25.0%
!!! TCTGATTTTTTCGCAATTTT+TGG + chr2_2:64404887-64404906 Msa0264460:intron 25.0%
!!! CTGATTTTTTCGCAATTTTT+GGG + chr2_2:64404888-64404907 Msa0264460:intron 25.0%
!! TTAATGATTTTTCGTAGAAG+AGG + chr2_2:64405346-64405365 Msa0264460:intron 25.0%
!! TAATGATTTTTCGTAGAAGA+GGG + chr2_2:64405347-64405366 Msa0264460:intron 25.0%
! TGTTGATGTAAGTAAAGTAA+AGG + chr2_2:64405914-64405933 Msa0264460:CDS 25.0%
! TCAAAGAATAAGGAAAAGAT+TGG + chr2_2:64406208-64406227 Msa0264460:CDS 25.0%
!!! AAAGATTGGCTTCTAAATAT+CGG + chr2_2:64406222-64406241 Msa0264460:CDS 25.0%
!! TATTTGAAACATGTTAGTTG+TGG + chr2_2:64406381-64406400 Msa0264460:intron 25.0%
! TGAATATTCCTTTCAAAAAG+AGG + chr2_2:64406467-64406486 Msa0264460:CDS 25.0%
!! AAAATCTTCCTCTTTTTGAA+AGG - chr2_2:64406478-64406497 None:intergenic 25.0%
! ATTTCCATTAGAATTTGAAG+TGG - chr2_2:64406512-64406531 None:intergenic 25.0%
! TAATGAAATGTTCCTATTCA+AGG + chr2_2:64406628-64406647 Msa0264460:intron 25.0%
!!! ATATTCTAGTTCAAGTAGTT+GGG - chr2_2:64407309-64407328 None:intergenic 25.0%
!!! CAGCATATTCTTTTTTTAGT+AGG - chr2_2:64407422-64407441 None:intergenic 25.0%
! TTAGGTGAAAAAAGATTGAT+AGG + chr2_2:64407713-64407732 Msa0264460:CDS 25.0%
! AACTAGCTAGATAGAATATT+AGG - chr2_2:64408450-64408469 None:intergenic 25.0%
! AATACAGTATAAGATACTGA+TGG + chr2_2:64408550-64408569 Msa0264460:intron 25.0%
! TAGTATTGCATTGTATCATT+TGG + chr2_2:64408606-64408625 Msa0264460:intron 25.0%
!!! TATTAGGTATTTGATAATGC+AGG + chr2_2:64408669-64408688 Msa0264460:intron 25.0%
!!! ATTTGATAATGCAGGATAAA+TGG + chr2_2:64408677-64408696 Msa0264460:intron 25.0%
! ACAAAAGAAAAAGTTACCAA+GGG - chr2_2:64408948-64408967 None:intergenic 25.0%
! TACAAAAGAAAAAGTTACCA+AGG - chr2_2:64408949-64408968 None:intergenic 25.0%
ATTCATGCAAAATGTGAGAT+CGG - chr2_2:64403956-64403975 None:intergenic 30.0%
! GATCTTTGAAGATAATTCTG+TGG + chr2_2:64404012-64404031 Msa0264460:five_prime_UTR 30.0%
! TCTTTGAAGATAATTCTGTG+GGG + chr2_2:64404014-64404033 Msa0264460:five_prime_UTR 30.0%
!! AGTTGAAATTTTGACGTGTT+TGG + chr2_2:64404194-64404213 Msa0264460:intron 30.0%
TCTTAAACCTCAGAGAAAAA+CGG - chr2_2:64404469-64404488 None:intergenic 30.0%
!!! TTTTCTCTGAGGTTTAAGAT+CGG + chr2_2:64404470-64404489 Msa0264460:intron 30.0%
GTATACCAATTATTACTCCT+AGG + chr2_2:64404712-64404731 Msa0264460:intron 30.0%
TAAACCCTAGGAGTAATAAT+TGG - chr2_2:64404720-64404739 None:intergenic 30.0%
CTGTAATCATTTCGTCAAAT+GGG - chr2_2:64404769-64404788 None:intergenic 30.0%
TCTGTAATCATTTCGTCAAA+TGG - chr2_2:64404770-64404789 None:intergenic 30.0%
TTCAACAACAATTACTGTGA+AGG - chr2_2:64404843-64404862 None:intergenic 30.0%
!!! GATCATTTCTTATTTTGGCA+TGG + chr2_2:64405144-64405163 Msa0264460:five_prime_UTR 30.0%
AGGATAGATTATGGATTTGT+TGG + chr2_2:64405192-64405211 Msa0264460:CDS 30.0%
TCATCGAAAAAAGATCAACA+TGG + chr2_2:64405486-64405505 Msa0264460:CDS 30.0%
AATTCGCATCTTGAAATTGA+TGG + chr2_2:64405729-64405748 Msa0264460:CDS 30.0%
TGAGCTACAAAAATCTGAAA+AGG + chr2_2:64405938-64405957 Msa0264460:CDS 30.0%
!! AAATCTGAAAAGGTACCAAT+CGG + chr2_2:64405948-64405967 Msa0264460:CDS 30.0%
!! ATGATGACGAAAACTTTTCA+GGG + chr2_2:64406129-64406148 Msa0264460:CDS 30.0%
!!! AGGACTTTGTTTTCAAACTA+GGG - chr2_2:64406163-64406182 None:intergenic 30.0%
!!! AAGGACTTTGTTTTCAAACT+AGG - chr2_2:64406164-64406183 None:intergenic 30.0%
GTATAGGTGATCAAAGAATA+AGG + chr2_2:64406198-64406217 Msa0264460:CDS 30.0%
AACTCCACTTCAAATTCTAA+TGG + chr2_2:64406505-64406524 Msa0264460:CDS 30.0%
TCTAATGGAAATATCAGAAG+TGG + chr2_2:64406520-64406539 Msa0264460:CDS 30.0%
TTACGATCTAAAGATTCTCA+TGG + chr2_2:64406751-64406770 Msa0264460:CDS 30.0%
TGAAGATATCAATCAAGTCA+GGG - chr2_2:64406809-64406828 None:intergenic 30.0%
TTGAAGATATCAATCAAGTC+AGG - chr2_2:64406810-64406829 None:intergenic 30.0%
CTTGATTGATATCTTCAAAG+AGG + chr2_2:64406812-64406831 Msa0264460:intron 30.0%
!!! TGTTTTAATCAGTGAAGCTT+AGG + chr2_2:64406855-64406874 Msa0264460:intron 30.0%
! GATCAAATCATTTAAAGTGC+CGG + chr2_2:64406877-64406896 Msa0264460:CDS 30.0%
AGTAAAACTCTACTTCAAAC+TGG + chr2_2:64407113-64407132 Msa0264460:CDS 30.0%
AATGCAATCAATTGCAAGTT+AGG - chr2_2:64407280-64407299 None:intergenic 30.0%
!! CATATTCTAGTTCAAGTAGT+TGG - chr2_2:64407310-64407329 None:intergenic 30.0%
TTTAATGACAACATCTCCAA+GGG - chr2_2:64407474-64407493 None:intergenic 30.0%
! TTTTAATGACAACATCTCCA+AGG - chr2_2:64407475-64407494 None:intergenic 30.0%
! CCTAATGTATTGATAGAAGA+AGG - chr2_2:64407698-64407717 None:intergenic 30.0%
CCTTCTTCTATCAATACATT+AGG + chr2_2:64407695-64407714 Msa0264460:CDS 30.0%
AGGAATAGTTACAAGTTCTT+TGG - chr2_2:64407741-64407760 None:intergenic 30.0%
ACTTGTAACTATTCCTGAAA+TGG + chr2_2:64407745-64407764 Msa0264460:CDS 30.0%
AACTATTCCTGAAATGGATA+CGG + chr2_2:64407751-64407770 Msa0264460:CDS 30.0%
! GTGTCATTAAAAAAATCAGG+TGG + chr2_2:64408135-64408154 Msa0264460:intron 30.0%
GTTCTATCAAGTCAAGTAAT+TGG + chr2_2:64408372-64408391 Msa0264460:intron 30.0%
CAAGTAATTGGTTGTGTATT+AGG + chr2_2:64408384-64408403 Msa0264460:intron 30.0%
TTGCCTTCTACTTTAATATG+AGG + chr2_2:64408852-64408871 Msa0264460:exon 30.0%
TGCCTTCTACTTTAATATGA+GGG + chr2_2:64408853-64408872 Msa0264460:exon 30.0%
ATCTACAAAGTCACATCATA+TGG - chr2_2:64408897-64408916 None:intergenic 30.0%
TATGATGTGACTTTGTAGAT+TGG + chr2_2:64408897-64408916 Msa0264460:three_prime_UTR 30.0%
!! GGCTATTTCTTGTAAGTAAA+TGG + chr2_2:64409132-64409151 Msa0264460:three_prime_UTR 30.0%
TTCATGCAAAATGTGAGATC+GGG - chr2_2:64403955-64403974 None:intergenic 35.0%
ACTGTTGTTGGGTTTATCTT+TGG + chr2_2:64404136-64404155 Msa0264460:intron 35.0%
CTGTTGTTGGGTTTATCTTT+GGG + chr2_2:64404137-64404156 Msa0264460:intron 35.0%
TGTTGTTGGGTTTATCTTTG+GGG + chr2_2:64404138-64404157 Msa0264460:intron 35.0%
!!! TGACGTGTTTGGTTTTGTTT+TGG + chr2_2:64404205-64404224 Msa0264460:intron 35.0%
!! TTTGGAAGTGTTTGTTTGTG+TGG + chr2_2:64404223-64404242 Msa0264460:intron 35.0%
AAGTGTTTGTTTGTGTGGTT+GGG + chr2_2:64404228-64404247 Msa0264460:intron 35.0%
! ACACGTGAGTTTTCAGTTTT+CGG + chr2_2:64404251-64404270 Msa0264460:intron 35.0%
! TCTCTGTTTATGCACTCTTT+TGG + chr2_2:64404317-64404336 Msa0264460:intron 35.0%
! ATTTCCATGTTGCTTGTGAT+AGG + chr2_2:64404395-64404414 Msa0264460:intron 35.0%
! TTTCCATGTTGCTTGTGATA+GGG + chr2_2:64404396-64404415 Msa0264460:intron 35.0%
!! TGTGTTGTTGTTTGGTGAAT+TGG + chr2_2:64404427-64404446 Msa0264460:intron 35.0%
AAGAGGACTAAACAAGACAA+AGG - chr2_2:64404504-64404523 None:intergenic 35.0%
!! TGTTTCTGGATTCTGTAATC+TGG + chr2_2:64404533-64404552 Msa0264460:intron 35.0%
!!! TCTGTAATCTGGTCTTGTTT+TGG + chr2_2:64404544-64404563 Msa0264460:intron 35.0%
TTGAAGAAGAACACGAGAAA+GGG - chr2_2:64404573-64404592 None:intergenic 35.0%
AGATTCAAATGAAGACGCAA+TGG - chr2_2:64404683-64404702 None:intergenic 35.0%
!! TTATGGATTTGTTGGCTATC+AGG + chr2_2:64405200-64405219 Msa0264460:CDS 35.0%
AAGCAGAATTCATTTACCCT+AGG - chr2_2:64405255-64405274 None:intergenic 35.0%
AATGAATTCTGCTTCGCTTA+TGG + chr2_2:64405261-64405280 Msa0264460:intron 35.0%
GGATACATTTCAAAGAAGTG+TGG + chr2_2:64405368-64405387 Msa0264460:CDS 35.0%
! AATGTGTGCGATTGACTTAT+TGG + chr2_2:64405401-64405420 Msa0264460:CDS 35.0%
TTTCTCTTGCAATAAAGTGC+CGG - chr2_2:64405439-64405458 None:intergenic 35.0%
TCAACATGGATTCGTTAAAG+AGG + chr2_2:64405500-64405519 Msa0264460:CDS 35.0%
CAACATGGATTCGTTAAAGA+GGG + chr2_2:64405501-64405520 Msa0264460:CDS 35.0%
!! TGAATGGTTTGTTTGCATCT+AGG - chr2_2:64405527-64405546 None:intergenic 35.0%
!! GCTTCAACACAGATTTGTTA+AGG + chr2_2:64405584-64405603 Msa0264460:CDS 35.0%
!! CAACACAGATTTGTTAAGGA+AGG + chr2_2:64405588-64405607 Msa0264460:CDS 35.0%
TTCAACGACTTATTTGCATC+CGG - chr2_2:64405618-64405637 None:intergenic 35.0%
! CAAGTTCTATTTTCTCAGAG+AGG + chr2_2:64405778-64405797 Msa0264460:CDS 35.0%
! TTCTATTTTCTCAGAGAGGT+TGG + chr2_2:64405782-64405801 Msa0264460:CDS 35.0%
AAAGTTGAATTAGGATCCTC+TGG + chr2_2:64405861-64405880 Msa0264460:CDS 35.0%
AAGTTGCAATCACTACAATC+TGG - chr2_2:64405891-64405910 None:intergenic 35.0%
!! GATGATGACGAAAACTTTTC+AGG + chr2_2:64406128-64406147 Msa0264460:CDS 35.0%
AAGTGACAAAACAAGAAAGC+AGG - chr2_2:64406323-64406342 None:intergenic 35.0%
GTGTTTCTTGTTCATCATCT+CGG + chr2_2:64406581-64406600 Msa0264460:CDS 35.0%
TTAAGTACAGTGCCTTGAAT+AGG - chr2_2:64406643-64406662 None:intergenic 35.0%
GGAATCTCAATAAAAAGCTC+CGG - chr2_2:64406899-64406918 None:intergenic 35.0%
! CTGCAGCTCTTACAAAATTT+TGG + chr2_2:64406996-64407015 Msa0264460:intron 35.0%
CATCTCTAAGTTTCTTTCCA+TGG - chr2_2:64407091-64407110 None:intergenic 35.0%
AATTTCTCATGATAACCAGC+TGG + chr2_2:64407136-64407155 Msa0264460:CDS 35.0%
AACATGCCTCTATCTTTACT+AGG + chr2_2:64407248-64407267 Msa0264460:CDS 35.0%
ACATGCCTCTATCTTTACTA+GGG + chr2_2:64407249-64407268 Msa0264460:CDS 35.0%
CATTACCCTAGTAAAGATAG+AGG - chr2_2:64407257-64407276 None:intergenic 35.0%
TCAGAGAAACCATGAATCAT+CGG - chr2_2:64407617-64407636 None:intergenic 35.0%
!!! CTTTTGATGATGCAAAGCAT+AGG + chr2_2:64408177-64408196 Msa0264460:intron 35.0%
TAGGACATATGTGGATTTGA+AGG + chr2_2:64408196-64408215 Msa0264460:intron 35.0%
GGTTGGCATGTGATAATATT+AGG + chr2_2:64408653-64408672 Msa0264460:intron 35.0%
GCAGGATAAATGGAAAACAT+TGG + chr2_2:64408687-64408706 Msa0264460:intron 35.0%
ATGGAAAACATTGGTACACA+CGG + chr2_2:64408696-64408715 Msa0264460:CDS 35.0%
ATATCTCCTCAACAAAGAAG+AGG + chr2_2:64408724-64408743 Msa0264460:CDS 35.0%
! TTCCTCAAGAACTTTTGGAT+AGG + chr2_2:64408755-64408774 Msa0264460:CDS 35.0%
! TCCTCAAGAACTTTTGGATA+GGG + chr2_2:64408756-64408775 Msa0264460:CDS 35.0%
!! TTGCTTTGTTTGTTGCTGTT+GGG - chr2_2:64408806-64408825 None:intergenic 35.0%
AAAGTAGAAGGCAAGTTTCA+GGG - chr2_2:64408846-64408865 None:intergenic 35.0%
TAAAGTAGAAGGCAAGTTTC+AGG - chr2_2:64408847-64408866 None:intergenic 35.0%
GCCTTCTACTTTAATATGAG+GGG + chr2_2:64408854-64408873 Msa0264460:exon 35.0%
CCTTCTACTTTAATATGAGG+GGG + chr2_2:64408855-64408874 Msa0264460:exon 35.0%
! TGTGACTTTGTAGATTGGTT+TGG + chr2_2:64408902-64408921 Msa0264460:three_prime_UTR 35.0%
!! CTTTGTAGATTGGTTTGGTT+AGG + chr2_2:64408907-64408926 Msa0264460:three_prime_UTR 35.0%
!! ATTGGTTTGGTTAGGTGTTA+AGG + chr2_2:64408915-64408934 Msa0264460:three_prime_UTR 35.0%
AAGGAAGAAAGTGAAGCATA+GGG + chr2_2:64409053-64409072 Msa0264460:three_prime_UTR 35.0%
TCAATTAGCAAGCCCTTTAT+TGG - chr2_2:64409165-64409184 None:intergenic 35.0%
ATGTGAGATCGGGGTAAATT+CGG - chr2_2:64403945-64403964 None:intergenic 40.0%
TCATGCAAAATGTGAGATCG+GGG - chr2_2:64403954-64403973 None:intergenic 40.0%
GAAGATAATTCTGTGGGGAA+AGG + chr2_2:64404019-64404038 Msa0264460:five_prime_UTR 40.0%
! GAAGTGTTTGTTTGTGTGGT+TGG + chr2_2:64404227-64404246 Msa0264460:intron 40.0%
AAACCCTATCACAAGCAACA+TGG - chr2_2:64404402-64404421 None:intergenic 40.0%
CAGAAACATTCACGAGAAAG+AGG - chr2_2:64404521-64404540 None:intergenic 40.0%
CTCTTTCTCGTGAATGTTTC+TGG + chr2_2:64404519-64404538 Msa0264460:intron 40.0%
CTTGAAGAAGAACACGAGAA+AGG - chr2_2:64404574-64404593 None:intergenic 40.0%
AGGAAATATCTTACATGGGG+AGG - chr2_2:64404918-64404937 None:intergenic 40.0%
GCGAGGAAATATCTTACATG+GGG - chr2_2:64404921-64404940 None:intergenic 40.0%
GGCGAGGAAATATCTTACAT+GGG - chr2_2:64404922-64404941 None:intergenic 40.0%
!! GGAGGGAAACAATGGATTAA+TGG + chr2_2:64404956-64404975 Msa0264460:intron 40.0%
GCGTTTGTGTGTTTAATGTC+AGG + chr2_2:64405068-64405087 Msa0264460:intron 40.0%
!! TTGGCATGGTTTCTGAGATA+TGG + chr2_2:64405158-64405177 Msa0264460:exon 40.0%
AAACAGAATCCAATCACACC+TGG + chr2_2:64405456-64405475 Msa0264460:CDS 40.0%
! ACTAGCTTCATTAGGAAGCT+CGG - chr2_2:64405553-64405572 None:intergenic 40.0%
! CTGTCACAACTAGCTTCATT+AGG - chr2_2:64405561-64405580 None:intergenic 40.0%
ATGAAGCTAGTTGTGACAGA+AGG + chr2_2:64405562-64405581 Msa0264460:CDS 40.0%
! ATTTGTTAAGGAAGGTTGCC+CGG + chr2_2:64405596-64405615 Msa0264460:CDS 40.0%
TCAACGACTTATTTGCATCC+GGG - chr2_2:64405617-64405636 None:intergenic 40.0%
ACTTACGTCATCAGAAAGCT+CGG - chr2_2:64405643-64405662 None:intergenic 40.0%
!!! TTTCTCTGCTTTTTCTTCGC+AGG + chr2_2:64405677-64405696 Msa0264460:CDS 40.0%
CGGTCAAAATCACTATTCGA+AGG + chr2_2:64405704-64405723 Msa0264460:CDS 40.0%
! AATTGATGGTCACTCATGCA+TGG + chr2_2:64405743-64405762 Msa0264460:CDS 40.0%
ACTACAATCTGGATATCCAG+AGG - chr2_2:64405880-64405899 None:intergenic 40.0%
ATGCTGTGTTGAGGAACTAA+TGG + chr2_2:64405986-64406005 Msa0264460:CDS 40.0%
! CACGATACACTTGCTAACAA+TGG + chr2_2:64406266-64406285 Msa0264460:CDS 40.0%
CGAACAAGCAAAAAGAAGCA+CGG - chr2_2:64406347-64406366 None:intergenic 40.0%
! CCTTGATTCGTGTCATTGTT+GGG - chr2_2:64406562-64406581 None:intergenic 40.0%
! ACCTTGATTCGTGTCATTGT+TGG - chr2_2:64406563-64406582 None:intergenic 40.0%
CAGGATCTGCAACAAAGATT+TGG - chr2_2:64406696-64406715 None:intergenic 40.0%
CAAATCTTTGTTGCAGATCC+TGG + chr2_2:64406694-64406713 Msa0264460:intron 40.0%
AGAATGACGATATGCTTCCA+AGG - chr2_2:64406728-64406747 None:intergenic 40.0%
TCATGGTATGCGAAGATTGA+GGG + chr2_2:64406768-64406787 Msa0264460:intron 40.0%
GGTAAGCTTTGCGAAGAATT+AGG - chr2_2:64407185-64407204 None:intergenic 40.0%
GAATCTTTAGCACATGTGAG+TGG - chr2_2:64407206-64407225 None:intergenic 40.0%
ATATGCTGTGTCAGTACCAT+CGG + chr2_2:64407325-64407344 Msa0264460:intron 40.0%
! ATGCTGTATCAGTGTTTCTG+TGG + chr2_2:64407436-64407455 Msa0264460:intron 40.0%
GTGGATATCTCAATTTCCCT+TGG + chr2_2:64407455-64407474 Msa0264460:intron 40.0%
AAACCATGAATCATCGGAGT+CGG - chr2_2:64407611-64407630 None:intergenic 40.0%
TTCAACAATGTTGCCTAACC+TGG - chr2_2:64407657-64407676 None:intergenic 40.0%
TATTCCTGAAATGGATACGG+AGG + chr2_2:64407754-64407773 Msa0264460:CDS 40.0%
ATTCCTGAAATGGATACGGA+GGG + chr2_2:64407755-64407774 Msa0264460:CDS 40.0%
AATTAGTAGAGCCATGCACA+CGG - chr2_2:64408108-64408127 None:intergenic 40.0%
TGCAAAGCATAGGACATATG+TGG + chr2_2:64408187-64408206 Msa0264460:intron 40.0%
TCCAAAAGTTCTTGAGGAAC+AGG - chr2_2:64408754-64408773 None:intergenic 40.0%
ACCCTATCCAAAAGTTCTTG+AGG - chr2_2:64408760-64408779 None:intergenic 40.0%
!! GTTGCTTTGTTTGTTGCTGT+TGG - chr2_2:64408807-64408826 None:intergenic 40.0%
CCCCCTCATATTAAAGTAGA+AGG - chr2_2:64408858-64408877 None:intergenic 40.0%
CAAGGAAGAAAGTGAAGCAT+AGG + chr2_2:64409052-64409071 Msa0264460:three_prime_UTR 40.0%
AGGAAGAAAGTGAAGCATAG+GGG + chr2_2:64409054-64409073 Msa0264460:three_prime_UTR 40.0%
CATTATCCTTGCTCACACTA+TGG + chr2_2:64409090-64409109 Msa0264460:three_prime_UTR 40.0%
AAAGAACCATAGTGTGAGCA+AGG - chr2_2:64409099-64409118 None:intergenic 40.0%
ACTATGGTTCTTTCCCTGTT+TGG + chr2_2:64409106-64409125 Msa0264460:three_prime_UTR 40.0%
AGAAATAGCCTCTCCAAACA+GGG - chr2_2:64409122-64409141 None:intergenic 40.0%
AAGAAATAGCCTCTCCAAAC+AGG - chr2_2:64409123-64409142 None:intergenic 40.0%
!! GTGAGATCCGTTTTTCTCTG+AGG + chr2_2:64404459-64404478 Msa0264460:intron 45.0%
GGGCGAGGAAATATCTTACA+TGG - chr2_2:64404923-64404942 None:intergenic 45.0%
TCAGGCTTCCAAATTGAGAC+TGG + chr2_2:64405086-64405105 Msa0264460:intron 45.0%
TGAACCTGCCAGTCTCAATT+TGG - chr2_2:64405097-64405116 None:intergenic 45.0%
!! GCATGGTTTCTGAGATATGG+TGG + chr2_2:64405161-64405180 Msa0264460:exon 45.0%
GCGCAGAAGAGGATAGATTA+TGG + chr2_2:64405183-64405202 Msa0264460:CDS 45.0%
ATTTACCCTAGGTGATCGTG+TGG - chr2_2:64405244-64405263 None:intergenic 45.0%
AATCCAATCACACCTGGTGA+CGG + chr2_2:64405462-64405481 Msa0264460:CDS 45.0%
!! TTTTTCGATGATCCGTCACC+AGG - chr2_2:64405477-64405496 None:intergenic 45.0%
!! TTAGGAAGCTCGGCTTTGAA+TGG - chr2_2:64405543-64405562 None:intergenic 45.0%
! CTGATGACGTAAGTAGTGAC+AGG + chr2_2:64405649-64405668 Msa0264460:CDS 45.0%
!! GCTTTTTCTTCGCAGGTGTA+CGG + chr2_2:64405684-64405703 Msa0264460:CDS 45.0%
GAAAAACCTCAAGCGCCAAT+AGG + chr2_2:64406011-64406030 Msa0264460:CDS 45.0%
GCATTGCCACCTAAACCTAT+TGG - chr2_2:64406029-64406048 None:intergenic 45.0%
ATCGTTATACCCCGACAACT+TGG - chr2_2:64406051-64406070 None:intergenic 45.0%
CCTTTGAACAACGAGCTACT+AGG - chr2_2:64406080-64406099 None:intergenic 45.0%
CCTAGTAGCTCGTTGTTCAA+AGG + chr2_2:64406077-64406096 Msa0264460:CDS 45.0%
CCCAACAATGACACGAATCA+AGG + chr2_2:64406559-64406578 Msa0264460:CDS 45.0%
AGATCCTGGAAAGTCATCCT+TGG + chr2_2:64406708-64406727 Msa0264460:intron 45.0%
CTCATGGTATGCGAAGATTG+AGG + chr2_2:64406767-64406786 Msa0264460:intron 45.0%
GAAGCAACAGTTGCAGTTTC+AGG - chr2_2:64406920-64406939 None:intergenic 45.0%
! TGCAACTGTTGCTTCCTTGA+AGG + chr2_2:64406925-64406944 Msa0264460:CDS 45.0%
TGGTCCACAGAAAGCAGTTA+TGG + chr2_2:64407016-64407035 Msa0264460:intron 45.0%
TCCACAGAAAGCAGTTATGG+AGG + chr2_2:64407019-64407038 Msa0264460:intron 45.0%
GCAGTGACTACTCTACTTCA+AGG + chr2_2:64407041-64407060 Msa0264460:CDS 45.0%
GTGACTACTCTACTTCAAGG+TGG + chr2_2:64407044-64407063 Msa0264460:CDS 45.0%
!! CGAGTTGGTATGATTCTCCA+TGG + chr2_2:64407071-64407090 Msa0264460:CDS 45.0%
TGATAACCAGCTGGATGCTT+TGG + chr2_2:64407145-64407164 Msa0264460:CDS 45.0%
GATAACCAGCTGGATGCTTT+GGG + chr2_2:64407146-64407165 Msa0264460:CDS 45.0%
TTGCGAAGAATTAGGCTCCA+AGG - chr2_2:64407177-64407196 None:intergenic 45.0%
TATGCTGTGTCAGTACCATC+GGG + chr2_2:64407326-64407345 Msa0264460:intron 45.0%
TTGACAACACACACACACTG+CGG - chr2_2:64407377-64407396 None:intergenic 45.0%
TGTGTGTGTTGTCAACCCTA+AGG + chr2_2:64407382-64407401 Msa0264460:intron 45.0%
TGTTGTCAACCCTAAGGTAC+TGG + chr2_2:64407388-64407407 Msa0264460:intron 45.0%
GAGCATCAAGTAACCAGGTT+AGG + chr2_2:64407641-64407660 Msa0264460:intron 45.0%
TGTGAGATCTCAGTTCGCTT+TGG - chr2_2:64407809-64407828 None:intergenic 45.0%
CAGAAAAAGGCCTGCGAATT+CGG - chr2_2:64407838-64407857 None:intergenic 45.0%
TCCACTTCGGCAACAGAAAA+AGG - chr2_2:64407851-64407870 None:intergenic 45.0%
TTCAACCAGTGCTTCCACTT+CGG - chr2_2:64407864-64407883 None:intergenic 45.0%
ACGGTCGATTAAGGACTCAT+TGG - chr2_2:64408089-64408108 None:intergenic 45.0%
ACAACGTGACTGTCACACTT+TGG + chr2_2:64408295-64408314 Msa0264460:intron 45.0%
! GCCTGTTCCTCAAGAACTTT+TGG + chr2_2:64408750-64408769 Msa0264460:CDS 45.0%
TCCTCACTGCTCATGCATAT+TGG + chr2_2:64408779-64408798 Msa0264460:CDS 45.0%
ACCAATATGCATGAGCAGTG+AGG - chr2_2:64408783-64408802 None:intergenic 45.0%
GTGTTAAGGTTTCTGACCCT+TGG + chr2_2:64408929-64408948 Msa0264460:three_prime_UTR 45.0%
TATTTCCTCGCCCTCAAGCA+TGG + chr2_2:64404930-64404949 Msa0264460:intron 50.0%
GCTTCCAAATTGAGACTGGC+AGG + chr2_2:64405090-64405109 Msa0264460:five_prime_UTR 50.0%
!! CTCTTGCAATAAAGTGCCGG+CGG - chr2_2:64405436-64405455 None:intergenic 50.0%
!! GAGGTTGGTTGCTGACGTTT+TGG + chr2_2:64405797-64405816 Msa0264460:CDS 50.0%
! GTTGGTTGCTGACGTTTTGG+TGG + chr2_2:64405800-64405819 Msa0264460:CDS 50.0%
CCTAAACCTATTGGCGCTTG+AGG - chr2_2:64406020-64406039 None:intergenic 50.0%
CCTCAAGCGCCAATAGGTTT+AGG + chr2_2:64406017-64406036 Msa0264460:CDS 50.0%
CAAGCGCCAATAGGTTTAGG+TGG + chr2_2:64406020-64406039 Msa0264460:CDS 50.0%
AGGTGGCAATGCCAAGTTGT+CGG + chr2_2:64406037-64406056 Msa0264460:CDS 50.0%
TCATCATCTCGGATGCGCAA+AGG + chr2_2:64406592-64406611 Msa0264460:CDS 50.0%
GCTTCCAAGGATGACTTTCC+AGG - chr2_2:64406715-64406734 None:intergenic 50.0%
GCCTCCATAACTGCTTTCTG+TGG - chr2_2:64407023-64407042 None:intergenic 50.0%
!! CTTCAAGGTGGATTGCGAGT+TGG + chr2_2:64407056-64407075 Msa0264460:CDS 50.0%
! AGAGGCATGTTGTCTGCAGT+AGG - chr2_2:64407239-64407258 None:intergenic 50.0%
GGAGTCGGATGAAGTACAGA+TGG - chr2_2:64407596-64407615 None:intergenic 50.0%
CATCCGACTCCGATGATTCA+TGG + chr2_2:64407605-64407624 Msa0264460:intron 50.0%
ACGCTGAGCATCAAGTAACC+AGG + chr2_2:64407636-64407655 Msa0264460:intron 50.0%
AGTCCCTCCGTATCCATTTC+AGG - chr2_2:64407761-64407780 None:intergenic 50.0%
! TCTCAGTTCGCTTTGGCTTC+TGG - chr2_2:64407802-64407821 None:intergenic 50.0%
AAAAAGGCCTGCGAATTCGG+CGG - chr2_2:64407835-64407854 None:intergenic 50.0%
! GCCTTTTTCTGTTGCCGAAG+TGG + chr2_2:64407847-64407866 Msa0264460:CDS 50.0%
TCCAGTTCCAAGTCTCTCGA+CGG - chr2_2:64407888-64407907 None:intergenic 50.0%
TCGAGAGACTTGGAACTGGA+AGG + chr2_2:64407888-64407907 Msa0264460:intron 50.0%
TCCTTAATCGACCGTGTGCA+TGG + chr2_2:64408094-64408113 Msa0264460:intron 50.0%
ACGTGACTGTCACACTTTGG+TGG + chr2_2:64408298-64408317 Msa0264460:intron 50.0%
GGCTCACCTCTTCTTTGTTG+AGG - chr2_2:64408733-64408752 None:intergenic 50.0%
GGTTCTTTCCCTGTTTGGAG+AGG + chr2_2:64409111-64409130 Msa0264460:three_prime_UTR 50.0%
CATGGCTGGGAGGGAAACAA+TGG + chr2_2:64404948-64404967 Msa0264460:intron 55.0%
TGGCAGGTTCAAGCAACACG+TGG + chr2_2:64405106-64405125 Msa0264460:five_prime_UTR 55.0%
! GAGATATGGTGGCGCAGAAG+AGG + chr2_2:64405172-64405191 Msa0264460:exon 55.0%
!! CAATAAAGTGCCGGCGGCTA+CGG - chr2_2:64405430-64405449 None:intergenic 55.0%
GATCCGTCACCAGGTGTGAT+TGG - chr2_2:64405468-64405487 None:intergenic 55.0%
GTACCAATCGGTACTGCGAC+TGG + chr2_2:64405960-64405979 Msa0264460:CDS 55.0%
GACTGGAGCATGCTGTGTTG+AGG + chr2_2:64405977-64405996 Msa0264460:CDS 55.0%
GGTGGCAATGCCAAGTTGTC+GGG + chr2_2:64406038-64406057 Msa0264460:CDS 55.0%
GTGGCAATGCCAAGTTGTCG+GGG + chr2_2:64406039-64406058 Msa0264460:CDS 55.0%
! TGAAGCCCAAAGCATCCAGC+TGG - chr2_2:64407154-64407173 None:intergenic 55.0%
! GGATGCTTTGGGCTTCACCT+TGG + chr2_2:64407157-64407176 Msa0264460:CDS 55.0%
CGGTACGCACCAACCACTTA+CGG - chr2_2:64407357-64407376 None:intergenic 55.0%
!! CGCTTTGGCTTCTGGTTCAC+TGG - chr2_2:64407794-64407813 None:intergenic 55.0%
! TGTTGCCGAAGTGGAAGCAC+TGG + chr2_2:64407856-64407875 Msa0264460:CDS 55.0%
GTTGAAGCCGTCGAGAGACT+TGG + chr2_2:64407878-64407897 Msa0264460:intron 55.0%
GCCATGCACACGGTCGATTA+AGG - chr2_2:64408098-64408117 None:intergenic 55.0%
TCCCTCCCAGCCATGCTTGA+GGG - chr2_2:64404943-64404962 None:intergenic 60.0%
TTCCCTCCCAGCCATGCTTG+AGG - chr2_2:64404944-64404963 None:intergenic 60.0%
CTAGGTGATCGTGTGGCACG+CGG - chr2_2:64405237-64405256 None:intergenic 60.0%
GCGTGCCACACGATCACCTA+GGG + chr2_2:64405236-64405255 Msa0264460:CDS 60.0%
TTATTGGCCACCGTAGCCGC+CGG + chr2_2:64405417-64405436 Msa0264460:CDS 60.0%
!! GCTCCAGTCGCAGTACCGAT+TGG - chr2_2:64405966-64405985 None:intergenic 60.0%
CCACTTACGGCAGAACCCGA+TGG - chr2_2:64407344-64407363 None:intergenic 60.0%
CCATCGGGTTCTGCCGTAAG+TGG + chr2_2:64407341-64407360 Msa0264460:intron 60.0%
CGGGTTCTGCCGTAAGTGGT+TGG + chr2_2:64407345-64407364 Msa0264460:intron 60.0%
GCCGTCGAGAGACTTGGAAC+TGG + chr2_2:64407884-64407903 Msa0264460:intron 60.0%
TCCTCGCCCTCAAGCATGGC+TGG + chr2_2:64404934-64404953 Msa0264460:intron 65.0%
CCTCGCCCTCAAGCATGGCT+GGG + chr2_2:64404935-64404954 Msa0264460:intron 65.0%
GCCCTCAAGCATGGCTGGGA+GGG + chr2_2:64404939-64404958 Msa0264460:intron 65.0%
! CGTGTGGCACGCGGCTTTGT+TGG - chr2_2:64405228-64405247 None:intergenic 65.0%
CGCGTGCCACACGATCACCT+AGG + chr2_2:64405235-64405254 Msa0264460:CDS 65.0%
!! TAAAGTGCCGGCGGCTACGG+TGG - chr2_2:64405427-64405446 None:intergenic 65.0%
CACAACGCCGCCGAATTCGC+AGG + chr2_2:64407825-64407844 Msa0264460:CDS 65.0%
CCCAGCCATGCTTGAGGGCG+AGG - chr2_2:64404938-64404957 None:intergenic 70.0%
CGCCCTCAAGCATGGCTGGG+AGG + chr2_2:64404938-64404957 Msa0264460:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 64403912 64409191 64403912 ID=Msa0264460;Name=Msa0264460
chr2_2 mRNA 64403912 64409191 64403912 ID=Msa0264460-mRNA-1;Parent=Msa0264460;Name=Msa0264460-mRNA-1;_AED=0.14;_eAED=0.14;_QI=216|0.75|0.88|1|0.87|0.77|9|324|671
chr2_2 exon 64403912 64404040 64403912 ID=Msa0264460-mRNA-1:exon:20089;Parent=Msa0264460-mRNA-1
chr2_2 exon 64405090 64405257 64405090 ID=Msa0264460-mRNA-1:exon:20090;Parent=Msa0264460-mRNA-1
chr2_2 exon 64405363 64406287 64405363 ID=Msa0264460-mRNA-1:exon:20091;Parent=Msa0264460-mRNA-1
chr2_2 exon 64406398 64406613 64406398 ID=Msa0264460-mRNA-1:exon:20092;Parent=Msa0264460-mRNA-1
chr2_2 exon 64406710 64406772 64406710 ID=Msa0264460-mRNA-1:exon:20093;Parent=Msa0264460-mRNA-1
chr2_2 exon 64406867 64406946 64406867 ID=Msa0264460-mRNA-1:exon:20094;Parent=Msa0264460-mRNA-1
chr2_2 exon 64407026 64407270 64407026 ID=Msa0264460-mRNA-1:exon:20095;Parent=Msa0264460-mRNA-1
chr2_2 exon 64407658 64407886 64407658 ID=Msa0264460-mRNA-1:exon:20096;Parent=Msa0264460-mRNA-1
chr2_2 exon 64408691 64409191 64408691 ID=Msa0264460-mRNA-1:exon:20097;Parent=Msa0264460-mRNA-1
chr2_2 five_prime_UTR 64403912 64404040 64403912 ID=Msa0264460-mRNA-1:five_prime_utr;Parent=Msa0264460-mRNA-1
chr2_2 five_prime_UTR 64405090 64405176 64405090 ID=Msa0264460-mRNA-1:five_prime_utr;Parent=Msa0264460-mRNA-1
chr2_2 CDS 64405177 64405257 64405177 ID=Msa0264460-mRNA-1:cds;Parent=Msa0264460-mRNA-1
chr2_2 CDS 64405363 64406287 64405363 ID=Msa0264460-mRNA-1:cds;Parent=Msa0264460-mRNA-1
chr2_2 CDS 64406398 64406613 64406398 ID=Msa0264460-mRNA-1:cds;Parent=Msa0264460-mRNA-1
chr2_2 CDS 64406710 64406772 64406710 ID=Msa0264460-mRNA-1:cds;Parent=Msa0264460-mRNA-1
chr2_2 CDS 64406867 64406946 64406867 ID=Msa0264460-mRNA-1:cds;Parent=Msa0264460-mRNA-1
chr2_2 CDS 64407026 64407270 64407026 ID=Msa0264460-mRNA-1:cds;Parent=Msa0264460-mRNA-1
chr2_2 CDS 64407658 64407886 64407658 ID=Msa0264460-mRNA-1:cds;Parent=Msa0264460-mRNA-1
chr2_2 CDS 64408691 64408867 64408691 ID=Msa0264460-mRNA-1:cds;Parent=Msa0264460-mRNA-1
chr2_2 three_prime_UTR 64408868 64409191 64408868 ID=Msa0264460-mRNA-1:three_prime_utr;Parent=Msa0264460-mRNA-1
Gene Sequence

>Msa0264460

ATGGTGGCGCAGAAGAGGATAGATTATGGATTTGTTGGCTATCAGGTGCCAACAAAGCCGCGTGCCACACGATCACCTAGGAAGAGGGATACATTTCAAAGAAGTGTGGAACACAATCAAATGTGTGCGATTGACTTATTGGCCACCGTAGCCGCCGGCACTTTATTGCAAGAGAAACAGAATCCAATCACACCTGGTGACGGATCATCGAAAAAAGATCAACATGGATTCGTTAAAGAGGGCCTAGATGCAAACAAACCATTCAAAGCCGAGCTTCCTAATGAAGCTAGTTGTGACAGAAGGCTTCAACACAGATTTGTTAAGGAAGGTTGCCCGGATGCAAATAAGTCGTTGAAAGCCGAGCTTTCTGATGACGTAAGTAGTGACAGGAAATGTTTCTCTGCTTTTTCTTCGCAGGTGTACGGTCAAAATCACTATTCGAAGGAAAATTCGCATCTTGAAATTGATGGTCACTCATGCATGGCTTCTATAGCAACAAGTTCTATTTTCTCAGAGAGGTTGGTTGCTGACGTTTTGGTGGATAGAAAAAGCCACAGTGAAATGAAAAATATTACTAGTAAAGTTGAATTAGGATCCTCTGGATATCCAGATTGTAGTGATTGCAACTTAGATGTTGATGTAAGTAAAGTAAAGGATGAGCTACAAAAATCTGAAAAGGTACCAATCGGTACTGCGACTGGAGCATGCTGTGTTGAGGAACTAATGGATGAAAAACCTCAAGCGCCAATAGGTTTAGGTGGCAATGCCAAGTTGTCGGGGTATAACGATAGTGTGCCTAGTAGCTCGTTGTTCAAAGGTTGCAAAAATGTAACTGTAGTTAGTAGAGATGATGACGAAAACTTTTCAGGGTGTGCTCACCCTAGTTTGAAAACAAAGTCCTTTAGATCAAAGAATTGTATAGGTGATCAAAGAATAAGGAAAAGATTGGCTTCTAAATATCGGAAAGTCGCTCGAGAATCAAAGCACGATACACTTGCTAACAATGTTGTGGATAGAAATTTCAACAGAGTTTACAACAGTCAGAAAAATTATCATAAACGCCAAATATCTCAAATGAATATTCCTTTCAAAAAGAGGAAGATTTTTGACTGCAACTCCACTTCAAATTCTAATGGAAATATCAGAAGTGGCTGCACTTACTATTTGCCCAACAATGACACGAATCAAGGTGTTTCTTGTTCATCATCTCGGATGCGCAAAGATCCTGGAAAGTCATCCTTGGAAGCATATCGTCATTCTGCATTACGATCTAAAGATTCTCATGTGAAGCTTAGGATCAAATCATTTAAAGTGCCGGAGCTTTTTATTGAGATTCCTGAAACTGCAACTGTTGCTTCCTTGAAGAAAGCAGTTATGGAGGCAGTGACTACTCTACTTCAAGGTGGATTGCGAGTTGGTATGATTCTCCATGGAAAGAAACTTAGAGATGACAGTAAAACTCTACTTCAAACTGGAATTTCTCATGATAACCAGCTGGATGCTTTGGGCTTCACCTTGGAGCCTAATTCTTCGCAAAGCTTACCACTCACATGTGCTAAAGATTCTCTTCATGTTCCTACTGCAGACAACATGCCTCTATCTTTACTAGGGTTAGGCAACATTGTTGAAAGTGATCATGATTCAGCACCTTCTTCTATCAATACATTAGGTGAAAAAAGATTGATAGGTTCCAAAGAACTTGTAACTATTCCTGAAATGGATACGGAGGGACTAGCTGTGTTACCAGTGAACCAGAAGCCAAAGCGAACTGAGATCTCACAACGCCGCCGAATTCGCAGGCCTTTTTCTGTTGCCGAAGTGGAAGCACTGGTTGAAGCCGATAAATGGAAAACATTGGTACACACGGCAAGAATATCTCCTCAACAAAGAAGAGGTGAGCCTGTTCCTCAAGAACTTTTGGATAGGGTCCTCACTGCTCATGCATATTGGTCCCAACAGCAACAAACAAAGCAACAACAACTCAAGCATCACCCTGAAACTTGCCTTCTACTTTAA
Protein sequence

>Msa0264460

MVAQKRIDYGFVGYQVPTKPRATRSPRKRDTFQRSVEHNQMCAIDLLATVAAGTLLQEKQNPITPGDGSSKKDQHGFVKEGLDANKPFKAELPNEASCDRRLQHRFVKEGCPDANKSLKAELSDDVSSDRKCFSAFSSQVYGQNHYSKENSHLEIDGHSCMASIATSSIFSERLVADVLVDRKSHSEMKNITSKVELGSSGYPDCSDCNLDVDVSKVKDELQKSEKVPIGTATGACCVEELMDEKPQAPIGLGGNAKLSGYNDSVPSSSLFKGCKNVTVVSRDDDENFSGCAHPSLKTKSFRSKNCIGDQRIRKRLASKYRKVARESKHDTLANNVVDRNFNRVYNSQKNYHKRQISQMNIPFKKRKIFDCNSTSNSNGNIRSGCTYYLPNNDTNQGVSCSSSRMRKDPGKSSLEAYRHSALRSKDSHVKLRIKSFKVPELFIEIPETATVASLKKAVMEAVTTLLQGGLRVGMILHGKKLRDDSKTLLQTGISHDNQLDALGFTLEPNSSQSLPLTCAKDSLHVPTADNMPLSLLGLGNIVESDHDSAPSSINTLGEKRLIGSKELVTIPEMDTEGLAVLPVNQKPKRTEISQRRRIRRPFSVAEVEALVEADKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQQQQTKQQQLKHHPETCLLL*