AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339700 MtrunA17_Chr2g0328331 89.133 727 21 4 1 669 1 727 0.0 1307
Msa0339700 MtrunA17_Chr3g0111941 39.619 472 213 9 246 668 183 631 9.52e-85 279
Msa0339700 MtrunA17_Chr3g0111941 31.788 151 63 5 1 111 1 151 6.16e-11 65.5
Msa0339700 MtrunA17_Chr5g0435351 40.426 470 201 11 250 661 157 605 1.55e-77 259
Msa0339700 MtrunA17_Chr7g0238741 39.865 444 173 12 267 652 196 603 2.41e-72 245
Msa0339700 MtrunA17_Chr7g0238741 41.346 104 50 4 1 98 1 99 9.90e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339700 AT1G07540.1 47.971 419 148 13 281 656 225 616 1.21e-93 303
Msa0339700 AT1G07540.1 56.140 57 24 1 1 57 1 56 5.21e-11 66.2
Msa0339700 AT3G12560.1 40.167 478 194 10 228 656 163 597 5.16e-87 285
Msa0339700 AT3G12560.2 40.167 478 194 10 228 656 163 597 5.16e-87 285
Msa0339700 AT3G46590.5 43.750 448 170 17 241 651 93 495 5.31e-86 279
Msa0339700 AT3G46590.1 44.196 448 168 18 241 651 133 535 1.00e-85 280
Msa0339700 AT3G46590.2 43.750 448 170 17 241 651 134 536 1.18e-85 280
Msa0339700 AT3G46590.3 43.527 448 165 17 241 651 134 530 1.72e-84 276
Msa0339700 AT5G13820.2 37.938 485 221 12 238 669 177 634 2.17e-78 263
Msa0339700 AT5G13820.1 37.938 485 221 12 238 669 177 634 2.17e-78 263
Msa0339700 AT5G59430.3 41.215 461 168 18 239 652 148 552 3.06e-75 252
Msa0339700 AT5G59430.4 40.830 458 168 18 239 649 147 548 1.12e-72 246
Msa0339700 AT5G59430.2 40.830 458 168 18 239 649 148 549 1.48e-72 245
Msa0339700 AT5G59430.1 40.830 458 168 18 239 649 148 549 1.48e-72 245
Msa0339700 AT5G59430.5 40.830 458 168 18 239 649 148 549 1.48e-72 245
Msa0339700 AT3G53790.1 40.520 269 84 6 422 649 163 396 1.11e-46 170
Msa0339700 AT3G46590.4 43.911 271 110 11 241 507 134 366 1.44e-46 170

Find 165 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTGATCATTTCTTATTT+TGG 0.137908 2_4:+60948274 Msa0339700:five_prime_UTR
GAATATTCATTTGAGATATT+TGG 0.208514 2_4:-60949582 None:intergenic
TAAAGTAGAAGGCAAGTTTC+AGG 0.226508 2_4:-60951980 None:intergenic
ATTACTAGTAAAGTTGAATT+AGG 0.235538 2_4:+60948981 Msa0339700:CDS
GGCTATTTCTTGTAAGTAAA+TGG 0.236955 2_4:+60952268 Msa0339700:three_prime_UTR
GCCTGTTCCTCAAGAACTTT+TGG 0.237700 2_4:+60951886 Msa0339700:CDS
TCTCAGTTCGCTTTGGCTTC+TGG 0.241253 2_4:-60950926 None:intergenic
GAAGCAACAGTTGCAGTTTC+AGG 0.244154 2_4:-60950046 None:intergenic
AGGAATAGTTACAAGTTCTT+TGG 0.254884 2_4:-60950865 None:intergenic
TGACCCTGCCAGTCTCAATT+TGG 0.255588 2_4:-60948229 None:intergenic
AGTCCCTCCGTATCCATTTC+AGG 0.264251 2_4:-60950885 None:intergenic
TCAACTTCGGCAACAGAAAA+AGG 0.271689 2_4:-60950975 None:intergenic
AATGTGTGCGATTGACTTAT+TGG 0.277403 2_4:+60948536 Msa0339700:CDS
ATTTGATAATGCAGGATAAA+TGG 0.287402 2_4:+60951813 Msa0339700:intron
GGTAAGCTTTGCGAAGAATT+AGG 0.294244 2_4:-60950311 None:intergenic
TTATGGATTTGTTGGCTATC+AGG 0.301924 2_4:+60948335 Msa0339700:CDS
TGATAACCAGCTGGATGCTT+TGG 0.304017 2_4:+60950274 Msa0339700:CDS
AAATGGTTTATATGCAATAA+AGG 0.304781 2_4:+60952285 Msa0339700:three_prime_UTR
GCTTCCAAGGATGACTTTCC+AGG 0.307385 2_4:-60949841 None:intergenic
CATCAAATGAATCGAAATTT+CGG 0.310457 2_4:-60947112 None:intergenic
ACTATGGTTCTTTCCCTGTT+TGG 0.311608 2_4:+60952242 Msa0339700:three_prime_UTR
AGGATAGATTATGGATTTGT+TGG 0.319703 2_4:+60948327 Msa0339700:CDS
ATTGGTTTGGTTAGGTGTTA+AGG 0.324737 2_4:+60952051 Msa0339700:three_prime_UTR
TGAATGGTTTGTTTGCATCT+AGG 0.330283 2_4:-60948659 None:intergenic
TTGCCTTCTACTTTAATATG+AGG 0.339068 2_4:+60951988 Msa0339700:exon
CTGTCACAACTAGCTTCATT+AGG 0.344968 2_4:-60948693 None:intergenic
GTATAGGTGATCAAAGAATA+AGG 0.363994 2_4:+60949327 Msa0339700:CDS
AAGAAATAGCCTCTCCAAAC+AGG 0.368417 2_4:-60952256 None:intergenic
AATTCGCATCTTGAAATTGA+TGG 0.376266 2_4:+60948858 Msa0339700:CDS
TTGGCATGGTTTCTGAGATA+TGG 0.379971 2_4:+60948293 Msa0339700:exon
CCTTGATTCGTGTCATTGTT+GGG 0.381125 2_4:-60949688 None:intergenic
CCTCAAGCGCCAATAGGTTT+AGG 0.381466 2_4:+60949146 Msa0339700:CDS
TCCAAAAGTTCTTGAGGAAC+AGG 0.384204 2_4:-60951887 None:intergenic
GATAACCAGCTGGATGCTTT+GGG 0.385054 2_4:+60950275 Msa0339700:CDS
GGTGGCAATGCCAAGTTGTC+GGG 0.385312 2_4:+60949167 Msa0339700:CDS
AATGGTTTATATGCAATAAA+GGG 0.385969 2_4:+60952286 Msa0339700:three_prime_UTR
ACTTGTAACTATTCCTGAAA+TGG 0.387283 2_4:+60950872 Msa0339700:CDS
CGCTTTGGCTTCTGGTTCAC+TGG 0.388587 2_4:-60950918 None:intergenic
CCTTCTTCTATCAATACATT+AGG 0.390584 2_4:+60950822 Msa0339700:CDS
CATCTCTAAGTTTCTTTCCA+TGG 0.391295 2_4:-60950217 None:intergenic
GCATTGCCACCTAAACCTAT+TGG 0.392718 2_4:-60949155 None:intergenic
ATGTGAGATCGGAGTATATT+CGG 0.393206 2_4:-60947075 None:intergenic
GCGCAGAAGAGGATAGATTA+TGG 0.397692 2_4:+60948318 Msa0339700:CDS
GTTGCTTTGTTTGTTGCTGT+TGG 0.399464 2_4:-60951940 None:intergenic
TGCAACTGTTGCTTCCTTGA+AGG 0.401829 2_4:+60950054 Msa0339700:CDS
AGTAAAACTCTACTTCAAAC+TGG 0.401926 2_4:+60950242 Msa0339700:CDS
CATTATCCTTGCTCACACTA+TGG 0.402352 2_4:+60952226 Msa0339700:three_prime_UTR
TCCTCACTGCTCATGCATAT+TGG 0.404954 2_4:+60951915 Msa0339700:CDS
AACTCCACTTCAAATTCTAA+TGG 0.407925 2_4:+60949634 Msa0339700:CDS
AAAGATTGGCTTCTAAATAT+CGG 0.408174 2_4:+60949351 Msa0339700:CDS
TATACAATTCTTTGATCTAA+AGG 0.408351 2_4:-60949309 None:intergenic
CGTGTGGCACGCGGCTTTGT+TGG 0.410650 2_4:-60948360 None:intergenic
TTGCTTTGTTTGTTGCTGTT+GGG 0.413177 2_4:-60951939 None:intergenic
GCTTCAACACAGATTTGTTA+AGG 0.414000 2_4:+60948719 Msa0339700:CDS
TTTAGATCAAAGAATTGTAT+AGG 0.421024 2_4:+60949311 Msa0339700:CDS
TGTGAGATCTCAGTTCGCTT+TGG 0.423608 2_4:-60950933 None:intergenic
TGGTCCACAGAAAGCAGTTA+TGG 0.424624 2_4:+60950145 Msa0339700:intron
ACACAGATTTGTTAAGGAAC+CGG 0.425345 2_4:+60948725 Msa0339700:CDS
GGATGCTTTGGGCTTCACCT+TGG 0.427101 2_4:+60950286 Msa0339700:CDS
GATCCGTCACCAGGTGTGAT+TGG 0.433742 2_4:-60948600 None:intergenic
CTTTGTAGATTGGTTTGGTT+AGG 0.439650 2_4:+60952043 Msa0339700:three_prime_UTR
ATCTACAAAGTCACATCATA+TGG 0.440519 2_4:-60952030 None:intergenic
ACCTTGATTCGTGTCATTGT+TGG 0.442882 2_4:-60949689 None:intergenic
CAATAAAGTGCCGGCGGCTA+CGG 0.444859 2_4:-60948562 None:intergenic
GAGGTTGGTTGCTGACGTTT+TGG 0.452923 2_4:+60948926 Msa0339700:CDS
AGGTGGCAATGCCAAGTTGT+CGG 0.455271 2_4:+60949166 Msa0339700:CDS
AAAGTAGAAGGCAAGTTTCA+GGG 0.459532 2_4:-60951979 None:intergenic
ATCTTTGAAGATAATTCTGT+GGG 0.461137 2_4:+60947146 Msa0339700:five_prime_UTR
AACATGCCTCTATCTTTACT+AGG 0.462368 2_4:+60950377 Msa0339700:CDS
TTCAACGACTTATTTGCATC+CGG 0.470804 2_4:-60948744 None:intergenic
AAAGTTGAATTAGGATCCTC+TGG 0.471052 2_4:+60948990 Msa0339700:CDS
GTGTTTCTTGTTCATCATCT+CGG 0.472466 2_4:+60949710 Msa0339700:CDS
TTAGGAAGCTCGGCTTTGAA+TGG 0.472558 2_4:-60948675 None:intergenic
GCTTCCAAATTGAGACTGGC+AGG 0.481659 2_4:+60948225 Msa0339700:five_prime_UTR
AAGTTGCAATCACTACAATC+TGG 0.484938 2_4:-60949017 None:intergenic
GTGTTAAGGTTTCTGACCCT+TGG 0.485722 2_4:+60952065 Msa0339700:three_prime_UTR
TGCCTTCTACTTTAATATGA+GGG 0.487747 2_4:+60951989 Msa0339700:exon
CAAGGAAGAAAGTGAAGCAT+AGG 0.488785 2_4:+60952188 Msa0339700:three_prime_UTR
GTACCAATCGGTACTGCGAC+TGG 0.489310 2_4:+60949089 Msa0339700:CDS
TTCTATTTGCTCAGAGAGGT+TGG 0.489879 2_4:+60948911 Msa0339700:CDS
TGTGACTTTGTAGATTGGTT+TGG 0.490365 2_4:+60952038 Msa0339700:three_prime_UTR
TATGATGTGACTTTGTAGAT+TGG 0.490431 2_4:+60952033 Msa0339700:three_prime_UTR
TCAAAGAATAAGGAAAAGAT+TGG 0.490559 2_4:+60949337 Msa0339700:CDS
TTCAACCAGTGCTTCAACTT+CGG 0.497529 2_4:-60950988 None:intergenic
GGCTCACCTCTTCTTTGTTG+AGG 0.499211 2_4:-60951866 None:intergenic
ATGCTGTGTTGAGGAACTAA+TGG 0.499819 2_4:+60949115 Msa0339700:CDS
GATCAAATCATTTAAAGTGC+CGG 0.507969 2_4:+60950006 Msa0339700:CDS
CCTTTGAACAACGAGCTACT+AGG 0.508550 2_4:-60949206 None:intergenic
CCTAGTAGCTCGTTGTTCAA+AGG 0.513868 2_4:+60949206 Msa0339700:CDS
CCTTCTACTTTAATATGAGG+GGG 0.515655 2_4:+60951991 Msa0339700:exon
CACAACGCCGCCGAATTCGC+AGG 0.516918 2_4:+60950952 Msa0339700:CDS
CCTAATGTATTGATAGAAGA+AGG 0.520168 2_4:-60950822 None:intergenic
ATCGTTATACCCCGACAACT+TGG 0.520649 2_4:-60949177 None:intergenic
CCCAACAATGACACGAATCA+AGG 0.522512 2_4:+60949688 Msa0339700:CDS
GAAGATAATTCTGTGGGGAA+AGG 0.524396 2_4:+60947152 Msa0339700:five_prime_UTR
CATTACCCTAGTAAAGATAG+AGG 0.525106 2_4:-60950383 None:intergenic
TAAAGTGCCGGCGGCTACGG+TGG 0.530670 2_4:-60948559 None:intergenic
TTTCTCTTGCAATAAAGTGC+CGG 0.532184 2_4:-60948571 None:intergenic
CGAGTTGGTATGATTCTCCA+TGG 0.533773 2_4:+60950200 Msa0339700:CDS
GCCTTCTACTTTAATATGAG+GGG 0.535220 2_4:+60951990 Msa0339700:exon
AAGGAAGAAAGTGAAGCATA+GGG 0.535836 2_4:+60952189 Msa0339700:three_prime_UTR
AACTATTCCTGAAATGGATA+CGG 0.538330 2_4:+60950878 Msa0339700:CDS
AAATCTGAAAAGGTACCAAT+CGG 0.539431 2_4:+60949077 Msa0339700:CDS
TGTTGATGTAAGTAAAGTAA+AGG 0.539535 2_4:+60949043 Msa0339700:CDS
CCTAAACCTATTGGCGCTTG+AGG 0.542181 2_4:-60949146 None:intergenic
CTGATGACGTAAGTAGTGAC+AGG 0.544616 2_4:+60948778 Msa0339700:CDS
GCAGTGACTACTCTACTTCA+AGG 0.546517 2_4:+60950170 Msa0339700:CDS
GGTTCTTTCCCTGTTTGGAG+AGG 0.549088 2_4:+60952247 Msa0339700:three_prime_UTR
ACTAGCTTCATTAGGAAGCT+CGG 0.549702 2_4:-60948685 None:intergenic
TGTTGCCGAAGTTGAAGCAC+TGG 0.554421 2_4:+60950983 Msa0339700:CDS
GATCTTTGAAGATAATTCTG+TGG 0.555472 2_4:+60947145 Msa0339700:five_prime_UTR
ATTCATGCAAAATGTGAGAT+CGG 0.564599 2_4:-60947086 None:intergenic
AATTTCTCATGATAACCAGC+TGG 0.565236 2_4:+60950265 Msa0339700:CDS
ATTTCCATTAGAATTTGAAG+TGG 0.566306 2_4:-60949638 None:intergenic
TCAGGCTTCCAAATTGAGAC+TGG 0.566330 2_4:+60948221 Msa0339700:intron
TCAACATGGATTCGTTAAAG+AGG 0.566359 2_4:+60948635 Msa0339700:CDS
CTTCAAGGTGGATTGCGAGT+TGG 0.570784 2_4:+60950185 Msa0339700:CDS
TCTAATGGAAATATCAGAAG+TGG 0.571057 2_4:+60949649 Msa0339700:CDS
GAGATATGGTGGCGCAGAAG+AGG 0.575112 2_4:+60948307 Msa0339700:exon
CACGATACACTTTCTAACAA+TGG 0.577025 2_4:+60949395 Msa0339700:CDS
AGATCCTGGAAAGTCATCCT+TGG 0.577146 2_4:+60949837 Msa0339700:intron
TGAAGCCCAAAGCATCCAGC+TGG 0.587306 2_4:-60950280 None:intergenic
CAACATGGATTCGTTAAAGA+GGG 0.588442 2_4:+60948636 Msa0339700:CDS
ATATCTCCTCAACAAAGAAG+AGG 0.590679 2_4:+60951860 Msa0339700:CDS
GCAGGATAAATGGAAAACAT+TGG 0.595370 2_4:+60951823 Msa0339700:intron
ACCCTATCCAAAAGTTCTTG+AGG 0.596914 2_4:-60951893 None:intergenic
GCGTGCCACACGATCACCTA+GGG 0.598126 2_4:+60948371 Msa0339700:CDS
TTACGATCTAAAGATTCTCA+TGG 0.598425 2_4:+60949880 Msa0339700:CDS
TCATCATCTCGGATGCGCAA+AGG 0.599031 2_4:+60949721 Msa0339700:CDS
AAAGAACCATAGTGTGAGCA+AGG 0.599354 2_4:-60952232 None:intergenic
ACTTACGTCATCAGAAAGCT+CGG 0.600372 2_4:-60948769 None:intergenic
CTAGGTGATCGTGTGGCACG+CGG 0.600422 2_4:-60948369 None:intergenic
CGGTCAAAATCACTATTCGA+AGG 0.601638 2_4:+60948833 Msa0339700:CDS
GACTGGAGCATGCTGTGTTG+AGG 0.602494 2_4:+60949106 Msa0339700:CDS
TTGCGAAGAATTAGGCTCCA+AGG 0.603627 2_4:-60950303 None:intergenic
AGAAATAGCCTCTCCAAACA+GGG 0.604751 2_4:-60952255 None:intergenic
GCTCCAGTCGCAGTACCGAT+TGG 0.608866 2_4:-60949092 None:intergenic
CTCTTGCAATAAAGTGCCGG+CGG 0.613646 2_4:-60948568 None:intergenic
ATGGAAAACATTGGTACACA+CGG 0.617941 2_4:+60951832 Msa0339700:CDS
ATGAAGCTAGTTGTGACAGA+AGG 0.618118 2_4:+60948697 Msa0339700:CDS
AGAGGCATGTTGTCTGCAGT+AGG 0.619918 2_4:-60950365 None:intergenic
AATCCAATCACACCTGGTGA+CGG 0.619982 2_4:+60948597 Msa0339700:CDS
TATTCCTGAAATGGATACGG+AGG 0.621261 2_4:+60950881 Msa0339700:CDS
GCATGGTTTCTGAGATATGG+TGG 0.624102 2_4:+60948296 Msa0339700:exon
ACATGCCTCTATCTTTACTA+GGG 0.625348 2_4:+60950378 Msa0339700:CDS
CAAGTTCTATTTGCTCAGAG+AGG 0.625767 2_4:+60948907 Msa0339700:CDS
TTATTGGCCACCGTAGCCGC+CGG 0.631400 2_4:+60948552 Msa0339700:CDS
AATTGATGGTCACTCATGCA+TGG 0.632522 2_4:+60948872 Msa0339700:CDS
AGAATGACGATATGCTTCCA+AGG 0.635283 2_4:-60949854 None:intergenic
GAATCTTTAGCACATGTGAG+TGG 0.636250 2_4:-60950332 None:intergenic
GGATACATTTCAAAGAAGTG+TGG 0.637536 2_4:+60948503 Msa0339700:CDS
GTGGCAATGCCAAGTTGTCG+GGG 0.645617 2_4:+60949168 Msa0339700:CDS
CAAGCGCCAATAGGTTTAGG+TGG 0.646070 2_4:+60949149 Msa0339700:CDS
CGCGTGCCACACGATCACCT+AGG 0.652320 2_4:+60948370 Msa0339700:CDS
ATTTACCCTAGGTGATCGTG+TGG 0.652914 2_4:-60948376 None:intergenic
TCCACAGAAAGCAGTTATGG+AGG 0.659363 2_4:+60950148 Msa0339700:intron
CTTCCAAATTGAGACTGGCA+GGG 0.663098 2_4:+60948226 Msa0339700:five_prime_UTR
ATTCCTGAAATGGATACGGA+GGG 0.670098 2_4:+60950882 Msa0339700:CDS
AAACAGAATCCAATCACACC+TGG 0.670956 2_4:+60948591 Msa0339700:CDS
ACCAATATGCATGAGCAGTG+AGG 0.673172 2_4:-60951916 None:intergenic
TGGCAGGGTCAAGCAACACG+TGG 0.689986 2_4:+60948241 Msa0339700:five_prime_UTR
AGGAAGAAAGTGAAGCATAG+GGG 0.691011 2_4:+60952190 Msa0339700:three_prime_UTR
ACTACAATCTGGATATCCAG+AGG 0.693416 2_4:-60949006 None:intergenic
GTGACTACTCTACTTCAAGG+TGG 0.715265 2_4:+60950173 Msa0339700:CDS
TCTTTGAAGATAATTCTGTG+GGG 0.761234 2_4:+60947147 Msa0339700:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTATTTGTGA+TGG + chr2_4:60947049-60947068 Msa0339700:five_prime_UTR 10.0%
!!! CATAATTTTAAAAAAGAAAA+TGG - chr2_4:60947945-60947964 None:intergenic 10.0%
!! AATAAATAGATAATAGTAAT+CGG - chr2_4:60948424-60948443 None:intergenic 10.0%
!!! GAATTTATTTAAAACTTATT+TGG + chr2_4:60951079-60951098 Msa0339700:intron 10.0%
!! AAAAAAAAATCTATACAAAA+GGG - chr2_4:60951364-60951383 None:intergenic 10.0%
!! AAAAAAAAAATCTATACAAA+AGG - chr2_4:60951365-60951384 None:intergenic 10.0%
!!! TGTATAGATTTTTTTTTTAT+TGG + chr2_4:60951367-60951386 Msa0339700:intron 10.0%
!! AAAAAAAAAAAACTGTTGTT+GGG + chr2_4:60947260-60947279 Msa0339700:intron 15.0%
!!! TATTTGATCATTTCTTATTT+TGG + chr2_4:60948274-60948293 Msa0339700:five_prime_UTR 15.0%
!!! TAGAATTTTTCAATTGTATA+TGG - chr2_4:60950100-60950119 None:intergenic 15.0%
!!! ATCACTTTTTTCTTTTTTTT+GGG + chr2_4:60952120-60952139 Msa0339700:three_prime_UTR 15.0%
!! ATGTAAAAAATTATAGTACA+AGG + chr2_4:60952170-60952189 Msa0339700:three_prime_UTR 15.0%
!!! TTTTTTTGTTGAATCTTTGA+TGG + chr2_4:60947179-60947198 Msa0339700:intron 20.0%
!!! TTTTTTGTTGAATCTTTGAT+GGG + chr2_4:60947180-60947199 Msa0339700:intron 20.0%
!!! CAAAAAGTTAGCATATTTTA+AGG - chr2_4:60947218-60947237 None:intergenic 20.0%
!! GAAAAAAAAAAAACTGTTGT+TGG + chr2_4:60947259-60947278 Msa0339700:intron 20.0%
!! ATACTAAAAAAATAAACCCT+AGG - chr2_4:60947867-60947886 None:intergenic 20.0%
!! ATGATTACAGATATTATCAA+TGG + chr2_4:60947914-60947933 Msa0339700:intron 20.0%
!! TTCAAAATTCAAACACATTA+TGG - chr2_4:60948178-60948197 None:intergenic 20.0%
!! CATTAAAAAAAGTAGTTACA+TGG - chr2_4:60948467-60948486 None:intergenic 20.0%
!!! TAATATTTTTCATTTCACTG+TGG - chr2_4:60948965-60948984 None:intergenic 20.0%
!! ATTACTAGTAAAGTTGAATT+AGG + chr2_4:60948981-60949000 Msa0339700:CDS 20.0%
!! TATACAATTCTTTGATCTAA+AGG - chr2_4:60949312-60949331 None:intergenic 20.0%
!! TTTAGATCAAAGAATTGTAT+AGG + chr2_4:60949311-60949330 Msa0339700:CDS 20.0%
!!! GAATATTCATTTGAGATATT+TGG - chr2_4:60949585-60949604 None:intergenic 20.0%
!!! ATAATTTTATTGTACCTTCA+AGG - chr2_4:60950071-60950090 None:intergenic 20.0%
!! AAATCAAGAGAATAATATTC+AGG + chr2_4:60950685-60950704 Msa0339700:intron 20.0%
!! ACTAACATTTGCATAATATT+TGG + chr2_4:60951114-60951133 Msa0339700:intron 20.0%
!!! TGATTTTTTTAATGACACAT+TGG - chr2_4:60951260-60951279 None:intergenic 20.0%
!!! AATGTGTCATTAAAAAAATC+AGG + chr2_4:60951259-60951278 Msa0339700:intron 20.0%
!!! AATCAACAAAAAAGCATAAA+TGG - chr2_4:60951562-60951581 None:intergenic 20.0%
!! TAGTATTTCATTGTATCATT+TGG + chr2_4:60951742-60951761 Msa0339700:intron 20.0%
!! TGTCCTTATAATAGAAAAAA+TGG + chr2_4:60951768-60951787 Msa0339700:intron 20.0%
!!! CAACCATTTTTTCTATTATA+AGG - chr2_4:60951774-60951793 None:intergenic 20.0%
!! CTTATAATAGAAAAAATGGT+TGG + chr2_4:60951772-60951791 Msa0339700:intron 20.0%
!!! CATCACTTTTTTCTTTTTTT+TGG + chr2_4:60952119-60952138 Msa0339700:three_prime_UTR 20.0%
!! AAATGGTTTATATGCAATAA+AGG + chr2_4:60952285-60952304 Msa0339700:three_prime_UTR 20.0%
!! AATGGTTTATATGCAATAAA+GGG + chr2_4:60952286-60952305 Msa0339700:three_prime_UTR 20.0%
! CATCAAATGAATCGAAATTT+CGG - chr2_4:60947115-60947134 None:intergenic 25.0%
!! ATCTTTGAAGATAATTCTGT+GGG + chr2_4:60947146-60947165 Msa0339700:five_prime_UTR 25.0%
!!! TTTTGTTTTGTGTTGTTGTT+TGG + chr2_4:60947554-60947573 Msa0339700:intron 25.0%
! TATACCAATTATTACTCCTA+GGG + chr2_4:60947848-60947867 Msa0339700:intron 25.0%
!! CAGTAATTGTTGTTGAATTT+AGG + chr2_4:60947981-60948000 Msa0339700:intron 25.0%
!! TTAATGATTTTTCGTAGAAG+AGG + chr2_4:60948481-60948500 Msa0339700:intron 25.0%
!! TAATGATTTTTCGTAGAAGA+GGG + chr2_4:60948482-60948501 Msa0339700:intron 25.0%
! TGTTGATGTAAGTAAAGTAA+AGG + chr2_4:60949043-60949062 Msa0339700:CDS 25.0%
! TCAAAGAATAAGGAAAAGAT+TGG + chr2_4:60949337-60949356 Msa0339700:CDS 25.0%
!!! AAAGATTGGCTTCTAAATAT+CGG + chr2_4:60949351-60949370 Msa0339700:CDS 25.0%
!! TATTTGAAACATGTTAGTTG+TGG + chr2_4:60949510-60949529 Msa0339700:intron 25.0%
! TGAATATTCCTTTCAAAAAG+AGG + chr2_4:60949596-60949615 Msa0339700:CDS 25.0%
!! AAAATCTTCCTCTTTTTGAA+AGG - chr2_4:60949607-60949626 None:intergenic 25.0%
! ATTTCCATTAGAATTTGAAG+TGG - chr2_4:60949641-60949660 None:intergenic 25.0%
! TAATGAAATGTTCCTATTCA+AGG + chr2_4:60949757-60949776 Msa0339700:intron 25.0%
!!! ATATTCTAGTTCAAGTAGTT+GGG - chr2_4:60950438-60950457 None:intergenic 25.0%
!!! CAGCATATTCTTTTTTTAGT+AGG - chr2_4:60950549-60950568 None:intergenic 25.0%
! TTAGGTGAAAAAAGATTGAT+AGG + chr2_4:60950840-60950859 Msa0339700:CDS 25.0%
!! TAGAACAACTAATTTGCATT+TGG - chr2_4:60951494-60951513 None:intergenic 25.0%
! AACTAGCTAGATAGAATATT+AGG - chr2_4:60951586-60951605 None:intergenic 25.0%
! AATACAGTATAAGATACTGA+TGG + chr2_4:60951686-60951705 Msa0339700:intron 25.0%
!!! TATTAGGTATTTGATAATGC+AGG + chr2_4:60951805-60951824 Msa0339700:intron 25.0%
!!! ATTTGATAATGCAGGATAAA+TGG + chr2_4:60951813-60951832 Msa0339700:intron 25.0%
! ACAAAAGAAAAAGTTACCAA+GGG - chr2_4:60952084-60952103 None:intergenic 25.0%
! TACAAAAGAAAAAGTTACCA+AGG - chr2_4:60952085-60952104 None:intergenic 25.0%
ATTCATGCAAAATGTGAGAT+CGG - chr2_4:60947089-60947108 None:intergenic 30.0%
! GATCTTTGAAGATAATTCTG+TGG + chr2_4:60947145-60947164 Msa0339700:five_prime_UTR 30.0%
! TCTTTGAAGATAATTCTGTG+GGG + chr2_4:60947147-60947166 Msa0339700:five_prime_UTR 30.0%
!! AGTTGAAATTTTGACGTGTT+TGG + chr2_4:60947329-60947348 Msa0339700:intron 30.0%
TCTTAAACCTCAGAGAAAAA+CGG - chr2_4:60947604-60947623 None:intergenic 30.0%
!!! TTTTCTCTGAGGTTTAAGAT+CGG + chr2_4:60947605-60947624 Msa0339700:intron 30.0%
GTATACCAATTATTACTCCT+AGG + chr2_4:60947847-60947866 Msa0339700:intron 30.0%
TAAACCCTAGGAGTAATAAT+TGG - chr2_4:60947855-60947874 None:intergenic 30.0%
CTGTAATCATTTCGTCAAAT+GGG - chr2_4:60947904-60947923 None:intergenic 30.0%
TCTGTAATCATTTCGTCAAA+TGG - chr2_4:60947905-60947924 None:intergenic 30.0%
TTCAACAACAATTACTGTGA+AGG - chr2_4:60947978-60947997 None:intergenic 30.0%
! TCTGATTTTCTCGCAATTTT+TGG + chr2_4:60948022-60948041 Msa0339700:intron 30.0%
! CTGATTTTCTCGCAATTTTT+GGG + chr2_4:60948023-60948042 Msa0339700:intron 30.0%
!!! GATCATTTCTTATTTTGGCA+TGG + chr2_4:60948279-60948298 Msa0339700:five_prime_UTR 30.0%
AGGATAGATTATGGATTTGT+TGG + chr2_4:60948327-60948346 Msa0339700:CDS 30.0%
TCATCGAAAAAAGATCAACA+TGG + chr2_4:60948621-60948640 Msa0339700:CDS 30.0%
AATTCGCATCTTGAAATTGA+TGG + chr2_4:60948858-60948877 Msa0339700:CDS 30.0%
TGAGCTACAAAAATCTGAAA+AGG + chr2_4:60949067-60949086 Msa0339700:CDS 30.0%
!! AAATCTGAAAAGGTACCAAT+CGG + chr2_4:60949077-60949096 Msa0339700:CDS 30.0%
!! ATGATGACGAAAACTTTTCA+GGG + chr2_4:60949258-60949277 Msa0339700:CDS 30.0%
!!! AGGACTTTGTTTTCAAACTA+GGG - chr2_4:60949292-60949311 None:intergenic 30.0%
!!! AAGGACTTTGTTTTCAAACT+AGG - chr2_4:60949293-60949312 None:intergenic 30.0%
GTATAGGTGATCAAAGAATA+AGG + chr2_4:60949327-60949346 Msa0339700:CDS 30.0%
AACTCCACTTCAAATTCTAA+TGG + chr2_4:60949634-60949653 Msa0339700:CDS 30.0%
TCTAATGGAAATATCAGAAG+TGG + chr2_4:60949649-60949668 Msa0339700:CDS 30.0%
TTACGATCTAAAGATTCTCA+TGG + chr2_4:60949880-60949899 Msa0339700:CDS 30.0%
CTTGATTGATATCTTCAAAG+AGG + chr2_4:60949941-60949960 Msa0339700:intron 30.0%
!!! TGTTTTAATCAGTGAAGCTT+AGG + chr2_4:60949984-60950003 Msa0339700:intron 30.0%
! GATCAAATCATTTAAAGTGC+CGG + chr2_4:60950006-60950025 Msa0339700:CDS 30.0%
AGTAAAACTCTACTTCAAAC+TGG + chr2_4:60950242-60950261 Msa0339700:CDS 30.0%
AATGCAATCAATTGCAAGTT+AGG - chr2_4:60950409-60950428 None:intergenic 30.0%
!! CATATTCTAGTTCAAGTAGT+TGG - chr2_4:60950439-60950458 None:intergenic 30.0%
TTTAATGACAACATCTCCAA+GGG - chr2_4:60950601-60950620 None:intergenic 30.0%
! TTTTAATGACAACATCTCCA+AGG - chr2_4:60950602-60950621 None:intergenic 30.0%
! CCTAATGTATTGATAGAAGA+AGG - chr2_4:60950825-60950844 None:intergenic 30.0%
CCTTCTTCTATCAATACATT+AGG + chr2_4:60950822-60950841 Msa0339700:CDS 30.0%
AGGAATAGTTACAAGTTCTT+TGG - chr2_4:60950868-60950887 None:intergenic 30.0%
ACTTGTAACTATTCCTGAAA+TGG + chr2_4:60950872-60950891 Msa0339700:CDS 30.0%
AACTATTCCTGAAATGGATA+CGG + chr2_4:60950878-60950897 Msa0339700:CDS 30.0%
! GTGTCATTAAAAAAATCAGG+TGG + chr2_4:60951262-60951281 Msa0339700:intron 30.0%
! TGTCACACTTTAAGTCATTT+TGG + chr2_4:60951431-60951450 Msa0339700:intron 30.0%
GTTCTATCAAGTCAAGTAAT+TGG + chr2_4:60951508-60951527 Msa0339700:intron 30.0%
CAAGTAATTGGTTGTGTATT+AGG + chr2_4:60951520-60951539 Msa0339700:intron 30.0%
TTGCCTTCTACTTTAATATG+AGG + chr2_4:60951988-60952007 Msa0339700:exon 30.0%
TGCCTTCTACTTTAATATGA+GGG + chr2_4:60951989-60952008 Msa0339700:exon 30.0%
ATCTACAAAGTCACATCATA+TGG - chr2_4:60952033-60952052 None:intergenic 30.0%
TATGATGTGACTTTGTAGAT+TGG + chr2_4:60952033-60952052 Msa0339700:three_prime_UTR 30.0%
!! GGCTATTTCTTGTAAGTAAA+TGG + chr2_4:60952268-60952287 Msa0339700:three_prime_UTR 30.0%
ATGTGAGATCGGAGTATATT+CGG - chr2_4:60947078-60947097 None:intergenic 35.0%
ACTGTTGTTGGGTTTATCTT+TGG + chr2_4:60947271-60947290 Msa0339700:intron 35.0%
CTGTTGTTGGGTTTATCTTT+GGG + chr2_4:60947272-60947291 Msa0339700:intron 35.0%
TGTTGTTGGGTTTATCTTTG+GGG + chr2_4:60947273-60947292 Msa0339700:intron 35.0%
!!! TGACGTGTTTGGTTTTGTTT+TGG + chr2_4:60947340-60947359 Msa0339700:intron 35.0%
!! TTTGGAAGTGTTTGTTTGTG+TGG + chr2_4:60947358-60947377 Msa0339700:intron 35.0%
AAGTGTTTGTTTGTGTGGTT+GGG + chr2_4:60947363-60947382 Msa0339700:intron 35.0%
! TCTCTGTTTATGCACTCTTT+TGG + chr2_4:60947452-60947471 Msa0339700:intron 35.0%
! ATTTCCATGTTGCTTGTGAT+AGG + chr2_4:60947530-60947549 Msa0339700:intron 35.0%
! TTTCCATGTTGCTTGTGATA+GGG + chr2_4:60947531-60947550 Msa0339700:intron 35.0%
!! TGTGTTGTTGTTTGGTGAAT+TGG + chr2_4:60947562-60947581 Msa0339700:intron 35.0%
AAGAGGACTAAACAAGACAA+AGG - chr2_4:60947639-60947658 None:intergenic 35.0%
!! TGTTTCTGGATTCTGTAATC+TGG + chr2_4:60947668-60947687 Msa0339700:intron 35.0%
!!! TCTGTAATCTGGTCTTGTTT+TGG + chr2_4:60947679-60947698 Msa0339700:intron 35.0%
TTGAAGAAGAACACGAGAAA+GGG - chr2_4:60947708-60947727 None:intergenic 35.0%
AGATTCAAATGAAGACGCAA+TGG - chr2_4:60947818-60947837 None:intergenic 35.0%
TCAAACACATTATGGTAAGC+TGG - chr2_4:60948170-60948189 None:intergenic 35.0%
!! TTATGGATTTGTTGGCTATC+AGG + chr2_4:60948335-60948354 Msa0339700:CDS 35.0%
AAGCAGAATTCATTTACCCT+AGG - chr2_4:60948390-60948409 None:intergenic 35.0%
AATGAATTCTGCTTCGCTTA+TGG + chr2_4:60948396-60948415 Msa0339700:intron 35.0%
GGATACATTTCAAAGAAGTG+TGG + chr2_4:60948503-60948522 Msa0339700:CDS 35.0%
! AATGTGTGCGATTGACTTAT+TGG + chr2_4:60948536-60948555 Msa0339700:CDS 35.0%
TTTCTCTTGCAATAAAGTGC+CGG - chr2_4:60948574-60948593 None:intergenic 35.0%
TCAACATGGATTCGTTAAAG+AGG + chr2_4:60948635-60948654 Msa0339700:CDS 35.0%
CAACATGGATTCGTTAAAGA+GGG + chr2_4:60948636-60948655 Msa0339700:CDS 35.0%
!! TGAATGGTTTGTTTGCATCT+AGG - chr2_4:60948662-60948681 None:intergenic 35.0%
!! GCTTCAACACAGATTTGTTA+AGG + chr2_4:60948719-60948738 Msa0339700:CDS 35.0%
!! ACACAGATTTGTTAAGGAAC+CGG + chr2_4:60948725-60948744 Msa0339700:CDS 35.0%
TTCAACGACTTATTTGCATC+CGG - chr2_4:60948747-60948766 None:intergenic 35.0%
AAAGTTGAATTAGGATCCTC+TGG + chr2_4:60948990-60949009 Msa0339700:CDS 35.0%
AAGTTGCAATCACTACAATC+TGG - chr2_4:60949020-60949039 None:intergenic 35.0%
!! GATGATGACGAAAACTTTTC+AGG + chr2_4:60949257-60949276 Msa0339700:CDS 35.0%
CACGATACACTTTCTAACAA+TGG + chr2_4:60949395-60949414 Msa0339700:CDS 35.0%
AAGTGACAAAACAAGAAAGC+AGG - chr2_4:60949452-60949471 None:intergenic 35.0%
GTGTTTCTTGTTCATCATCT+CGG + chr2_4:60949710-60949729 Msa0339700:CDS 35.0%
TTAAGTACAGTGCCTTGAAT+AGG - chr2_4:60949772-60949791 None:intergenic 35.0%
GGAATCTCAATAAAAAGCTC+CGG - chr2_4:60950028-60950047 None:intergenic 35.0%
! CTGCAGCTCTTACAAAATTT+TGG + chr2_4:60950125-60950144 Msa0339700:intron 35.0%
CATCTCTAAGTTTCTTTCCA+TGG - chr2_4:60950220-60950239 None:intergenic 35.0%
AATTTCTCATGATAACCAGC+TGG + chr2_4:60950265-60950284 Msa0339700:CDS 35.0%
AACATGCCTCTATCTTTACT+AGG + chr2_4:60950377-60950396 Msa0339700:CDS 35.0%
ACATGCCTCTATCTTTACTA+GGG + chr2_4:60950378-60950397 Msa0339700:CDS 35.0%
CATTACCCTAGTAAAGATAG+AGG - chr2_4:60950386-60950405 None:intergenic 35.0%
TCAGAGAAACCATGAATCAT+CGG - chr2_4:60950744-60950763 None:intergenic 35.0%
!!! CTTTTGATGATGCAAAGCAT+AGG + chr2_4:60951304-60951323 Msa0339700:intron 35.0%
TAGGACATATGTGGATTTGA+AGG + chr2_4:60951323-60951342 Msa0339700:intron 35.0%
!! CACACTTTAAGTCATTTTGG+TGG + chr2_4:60951434-60951453 Msa0339700:intron 35.0%
GGTTGGCATGTGATAATATT+AGG + chr2_4:60951789-60951808 Msa0339700:intron 35.0%
GCAGGATAAATGGAAAACAT+TGG + chr2_4:60951823-60951842 Msa0339700:intron 35.0%
ATGGAAAACATTGGTACACA+CGG + chr2_4:60951832-60951851 Msa0339700:CDS 35.0%
ATATCTCCTCAACAAAGAAG+AGG + chr2_4:60951860-60951879 Msa0339700:CDS 35.0%
! TTCCTCAAGAACTTTTGGAT+AGG + chr2_4:60951891-60951910 Msa0339700:CDS 35.0%
! TCCTCAAGAACTTTTGGATA+GGG + chr2_4:60951892-60951911 Msa0339700:CDS 35.0%
!! TTGCTTTGTTTGTTGCTGTT+GGG - chr2_4:60951942-60951961 None:intergenic 35.0%
AAAGTAGAAGGCAAGTTTCA+GGG - chr2_4:60951982-60952001 None:intergenic 35.0%
TAAAGTAGAAGGCAAGTTTC+AGG - chr2_4:60951983-60952002 None:intergenic 35.0%
GCCTTCTACTTTAATATGAG+GGG + chr2_4:60951990-60952009 Msa0339700:exon 35.0%
CCTTCTACTTTAATATGAGG+GGG + chr2_4:60951991-60952010 Msa0339700:exon 35.0%
! TGTGACTTTGTAGATTGGTT+TGG + chr2_4:60952038-60952057 Msa0339700:three_prime_UTR 35.0%
!! CTTTGTAGATTGGTTTGGTT+AGG + chr2_4:60952043-60952062 Msa0339700:three_prime_UTR 35.0%
!! ATTGGTTTGGTTAGGTGTTA+AGG + chr2_4:60952051-60952070 Msa0339700:three_prime_UTR 35.0%
AAGGAAGAAAGTGAAGCATA+GGG + chr2_4:60952189-60952208 Msa0339700:three_prime_UTR 35.0%
GAAGATAATTCTGTGGGGAA+AGG + chr2_4:60947152-60947171 Msa0339700:five_prime_UTR 40.0%
! GAAGTGTTTGTTTGTGTGGT+TGG + chr2_4:60947362-60947381 Msa0339700:intron 40.0%
AGTGTTTGTTTGTGTGGTTG+GGG + chr2_4:60947364-60947383 Msa0339700:intron 40.0%
! GCACGTGAGTTTTCAGTTTT+CGG + chr2_4:60947386-60947405 Msa0339700:intron 40.0%
AAACCCTATCACAAGCAACA+TGG - chr2_4:60947537-60947556 None:intergenic 40.0%
CAGAAACATTCACGAGAAAG+AGG - chr2_4:60947656-60947675 None:intergenic 40.0%
CTCTTTCTCGTGAATGTTTC+TGG + chr2_4:60947654-60947673 Msa0339700:intron 40.0%
CTTGAAGAAGAACACGAGAA+AGG - chr2_4:60947709-60947728 None:intergenic 40.0%
AGGAAATATCTTACATGGGG+AGG - chr2_4:60948053-60948072 None:intergenic 40.0%
GCGAGGAAATATCTTACATG+GGG - chr2_4:60948056-60948075 None:intergenic 40.0%
GGCGAGGAAATATCTTACAT+GGG - chr2_4:60948057-60948076 None:intergenic 40.0%
!! GGAGGGAAACAATGGATTAA+TGG + chr2_4:60948091-60948110 Msa0339700:intron 40.0%
GCGTTTGTGTGTTTAATGTC+AGG + chr2_4:60948203-60948222 Msa0339700:intron 40.0%
!! TTGGCATGGTTTCTGAGATA+TGG + chr2_4:60948293-60948312 Msa0339700:exon 40.0%
AAACAGAATCCAATCACACC+TGG + chr2_4:60948591-60948610 Msa0339700:CDS 40.0%
! ACTAGCTTCATTAGGAAGCT+CGG - chr2_4:60948688-60948707 None:intergenic 40.0%
! CTGTCACAACTAGCTTCATT+AGG - chr2_4:60948696-60948715 None:intergenic 40.0%
ATGAAGCTAGTTGTGACAGA+AGG + chr2_4:60948697-60948716 Msa0339700:CDS 40.0%
ACTTACGTCATCAGAAAGCT+CGG - chr2_4:60948772-60948791 None:intergenic 40.0%
!!! TTTCTCTGCTTTTTCTTCGC+AGG + chr2_4:60948806-60948825 Msa0339700:CDS 40.0%
CGGTCAAAATCACTATTCGA+AGG + chr2_4:60948833-60948852 Msa0339700:CDS 40.0%
! AATTGATGGTCACTCATGCA+TGG + chr2_4:60948872-60948891 Msa0339700:CDS 40.0%
CAAGTTCTATTTGCTCAGAG+AGG + chr2_4:60948907-60948926 Msa0339700:CDS 40.0%
TTCTATTTGCTCAGAGAGGT+TGG + chr2_4:60948911-60948930 Msa0339700:CDS 40.0%
ACTACAATCTGGATATCCAG+AGG - chr2_4:60949009-60949028 None:intergenic 40.0%
ATGCTGTGTTGAGGAACTAA+TGG + chr2_4:60949115-60949134 Msa0339700:CDS 40.0%
CGAACAAGCAAAAAGAAGCA+CGG - chr2_4:60949476-60949495 None:intergenic 40.0%
! CCTTGATTCGTGTCATTGTT+GGG - chr2_4:60949691-60949710 None:intergenic 40.0%
! ACCTTGATTCGTGTCATTGT+TGG - chr2_4:60949692-60949711 None:intergenic 40.0%
CAGGATCTGCAACAAAGATT+TGG - chr2_4:60949825-60949844 None:intergenic 40.0%
CAAATCTTTGTTGCAGATCC+TGG + chr2_4:60949823-60949842 Msa0339700:intron 40.0%
AGAATGACGATATGCTTCCA+AGG - chr2_4:60949857-60949876 None:intergenic 40.0%
TCATGGTATGCGAAGATTGA+GGG + chr2_4:60949897-60949916 Msa0339700:intron 40.0%
GGTAAGCTTTGCGAAGAATT+AGG - chr2_4:60950314-60950333 None:intergenic 40.0%
GAATCTTTAGCACATGTGAG+TGG - chr2_4:60950335-60950354 None:intergenic 40.0%
ATATGCTGTGTCAGTACCAT+CGG + chr2_4:60950454-60950473 Msa0339700:intron 40.0%
! ATGCTGTATCAGTGTTTCTG+TGG + chr2_4:60950563-60950582 Msa0339700:intron 40.0%
GTGGATATCTCAATTTCCCT+TGG + chr2_4:60950582-60950601 Msa0339700:intron 40.0%
AAACCATGAATCATCGGAGT+CGG - chr2_4:60950738-60950757 None:intergenic 40.0%
TTCAACAATGTTGCCTAACC+TGG - chr2_4:60950784-60950803 None:intergenic 40.0%
TATTCCTGAAATGGATACGG+AGG + chr2_4:60950881-60950900 Msa0339700:CDS 40.0%
ATTCCTGAAATGGATACGGA+GGG + chr2_4:60950882-60950901 Msa0339700:CDS 40.0%
TCAACTTCGGCAACAGAAAA+AGG - chr2_4:60950978-60950997 None:intergenic 40.0%
TTCAACCAGTGCTTCAACTT+CGG - chr2_4:60950991-60951010 None:intergenic 40.0%
AATTAGTAGAGCCATGCACA+CGG - chr2_4:60951235-60951254 None:intergenic 40.0%
TGCAAAGCATAGGACATATG+TGG + chr2_4:60951314-60951333 Msa0339700:intron 40.0%
TCCAAAAGTTCTTGAGGAAC+AGG - chr2_4:60951890-60951909 None:intergenic 40.0%
ACCCTATCCAAAAGTTCTTG+AGG - chr2_4:60951896-60951915 None:intergenic 40.0%
!! GTTGCTTTGTTTGTTGCTGT+TGG - chr2_4:60951943-60951962 None:intergenic 40.0%
CCCCCTCATATTAAAGTAGA+AGG - chr2_4:60951994-60952013 None:intergenic 40.0%
CAAGGAAGAAAGTGAAGCAT+AGG + chr2_4:60952188-60952207 Msa0339700:three_prime_UTR 40.0%
AGGAAGAAAGTGAAGCATAG+GGG + chr2_4:60952190-60952209 Msa0339700:three_prime_UTR 40.0%
CATTATCCTTGCTCACACTA+TGG + chr2_4:60952226-60952245 Msa0339700:three_prime_UTR 40.0%
AAAGAACCATAGTGTGAGCA+AGG - chr2_4:60952235-60952254 None:intergenic 40.0%
ACTATGGTTCTTTCCCTGTT+TGG + chr2_4:60952242-60952261 Msa0339700:three_prime_UTR 40.0%
AGAAATAGCCTCTCCAAACA+GGG - chr2_4:60952258-60952277 None:intergenic 40.0%
AAGAAATAGCCTCTCCAAAC+AGG - chr2_4:60952259-60952278 None:intergenic 40.0%
!! GTGAGATCCGTTTTTCTCTG+AGG + chr2_4:60947594-60947613 Msa0339700:intron 45.0%
GGGCGAGGAAATATCTTACA+TGG - chr2_4:60948058-60948077 None:intergenic 45.0%
TCAGGCTTCCAAATTGAGAC+TGG + chr2_4:60948221-60948240 Msa0339700:intron 45.0%
CTTCCAAATTGAGACTGGCA+GGG + chr2_4:60948226-60948245 Msa0339700:five_prime_UTR 45.0%
!! GCATGGTTTCTGAGATATGG+TGG + chr2_4:60948296-60948315 Msa0339700:exon 45.0%
GCGCAGAAGAGGATAGATTA+TGG + chr2_4:60948318-60948337 Msa0339700:CDS 45.0%
ATTTACCCTAGGTGATCGTG+TGG - chr2_4:60948379-60948398 None:intergenic 45.0%
AATCCAATCACACCTGGTGA+CGG + chr2_4:60948597-60948616 Msa0339700:CDS 45.0%
!! TTTTTCGATGATCCGTCACC+AGG - chr2_4:60948612-60948631 None:intergenic 45.0%
!! TTAGGAAGCTCGGCTTTGAA+TGG - chr2_4:60948678-60948697 None:intergenic 45.0%
! CTGATGACGTAAGTAGTGAC+AGG + chr2_4:60948778-60948797 Msa0339700:CDS 45.0%
!! GCTTTTTCTTCGCAGGTGTA+CGG + chr2_4:60948813-60948832 Msa0339700:CDS 45.0%
GAAAAACCTCAAGCGCCAAT+AGG + chr2_4:60949140-60949159 Msa0339700:CDS 45.0%
GCATTGCCACCTAAACCTAT+TGG - chr2_4:60949158-60949177 None:intergenic 45.0%
ATCGTTATACCCCGACAACT+TGG - chr2_4:60949180-60949199 None:intergenic 45.0%
CCTTTGAACAACGAGCTACT+AGG - chr2_4:60949209-60949228 None:intergenic 45.0%
CCTAGTAGCTCGTTGTTCAA+AGG + chr2_4:60949206-60949225 Msa0339700:CDS 45.0%
CCCAACAATGACACGAATCA+AGG + chr2_4:60949688-60949707 Msa0339700:CDS 45.0%
AGATCCTGGAAAGTCATCCT+TGG + chr2_4:60949837-60949856 Msa0339700:intron 45.0%
CTCATGGTATGCGAAGATTG+AGG + chr2_4:60949896-60949915 Msa0339700:intron 45.0%
GAAGCAACAGTTGCAGTTTC+AGG - chr2_4:60950049-60950068 None:intergenic 45.0%
! TGCAACTGTTGCTTCCTTGA+AGG + chr2_4:60950054-60950073 Msa0339700:CDS 45.0%
TGGTCCACAGAAAGCAGTTA+TGG + chr2_4:60950145-60950164 Msa0339700:intron 45.0%
TCCACAGAAAGCAGTTATGG+AGG + chr2_4:60950148-60950167 Msa0339700:intron 45.0%
GCAGTGACTACTCTACTTCA+AGG + chr2_4:60950170-60950189 Msa0339700:CDS 45.0%
GTGACTACTCTACTTCAAGG+TGG + chr2_4:60950173-60950192 Msa0339700:CDS 45.0%
!! CGAGTTGGTATGATTCTCCA+TGG + chr2_4:60950200-60950219 Msa0339700:CDS 45.0%
TGATAACCAGCTGGATGCTT+TGG + chr2_4:60950274-60950293 Msa0339700:CDS 45.0%
GATAACCAGCTGGATGCTTT+GGG + chr2_4:60950275-60950294 Msa0339700:CDS 45.0%
TTGCGAAGAATTAGGCTCCA+AGG - chr2_4:60950306-60950325 None:intergenic 45.0%
TATGCTGTGTCAGTACCATC+GGG + chr2_4:60950455-60950474 Msa0339700:intron 45.0%
TGTGTGTGTTGTCAACCCTA+AGG + chr2_4:60950509-60950528 Msa0339700:intron 45.0%
TGTTGTCAACCCTAAGGTAC+TGG + chr2_4:60950515-60950534 Msa0339700:intron 45.0%
! GTTGTCAACCCTAAGGTACT+GGG + chr2_4:60950516-60950535 Msa0339700:intron 45.0%
GAGCATCAAGTAACCAGGTT+AGG + chr2_4:60950768-60950787 Msa0339700:intron 45.0%
TGTGAGATCTCAGTTCGCTT+TGG - chr2_4:60950936-60950955 None:intergenic 45.0%
CAGAAAAAGGCCTGCGAATT+CGG - chr2_4:60950965-60950984 None:intergenic 45.0%
ACGGTCGATTAAGGACTCAT+TGG - chr2_4:60951216-60951235 None:intergenic 45.0%
! GCCTGTTCCTCAAGAACTTT+TGG + chr2_4:60951886-60951905 Msa0339700:CDS 45.0%
TCCTCACTGCTCATGCATAT+TGG + chr2_4:60951915-60951934 Msa0339700:CDS 45.0%
ACCAATATGCATGAGCAGTG+AGG - chr2_4:60951919-60951938 None:intergenic 45.0%
GTGTTAAGGTTTCTGACCCT+TGG + chr2_4:60952065-60952084 Msa0339700:three_prime_UTR 45.0%
TATTTCCTCGCCCTCAAGCA+TGG + chr2_4:60948065-60948084 Msa0339700:intron 50.0%
GCTTCCAAATTGAGACTGGC+AGG + chr2_4:60948225-60948244 Msa0339700:five_prime_UTR 50.0%
TGACCCTGCCAGTCTCAATT+TGG - chr2_4:60948232-60948251 None:intergenic 50.0%
!! CTCTTGCAATAAAGTGCCGG+CGG - chr2_4:60948571-60948590 None:intergenic 50.0%
!! GAGGTTGGTTGCTGACGTTT+TGG + chr2_4:60948926-60948945 Msa0339700:CDS 50.0%
! GTTGGTTGCTGACGTTTTGG+TGG + chr2_4:60948929-60948948 Msa0339700:CDS 50.0%
CCTAAACCTATTGGCGCTTG+AGG - chr2_4:60949149-60949168 None:intergenic 50.0%
CCTCAAGCGCCAATAGGTTT+AGG + chr2_4:60949146-60949165 Msa0339700:CDS 50.0%
CAAGCGCCAATAGGTTTAGG+TGG + chr2_4:60949149-60949168 Msa0339700:CDS 50.0%
AGGTGGCAATGCCAAGTTGT+CGG + chr2_4:60949166-60949185 Msa0339700:CDS 50.0%
TCATCATCTCGGATGCGCAA+AGG + chr2_4:60949721-60949740 Msa0339700:CDS 50.0%
GCTTCCAAGGATGACTTTCC+AGG - chr2_4:60949844-60949863 None:intergenic 50.0%
GCCTCCATAACTGCTTTCTG+TGG - chr2_4:60950152-60950171 None:intergenic 50.0%
!! CTTCAAGGTGGATTGCGAGT+TGG + chr2_4:60950185-60950204 Msa0339700:CDS 50.0%
! AGAGGCATGTTGTCTGCAGT+AGG - chr2_4:60950368-60950387 None:intergenic 50.0%
GGTTGACAACACACACACTG+CGG - chr2_4:60950506-60950525 None:intergenic 50.0%
GGAGTCGGATGAAGTACAGA+TGG - chr2_4:60950723-60950742 None:intergenic 50.0%
CATCCGACTCCGATGATTCA+TGG + chr2_4:60950732-60950751 Msa0339700:intron 50.0%
ACGCTGAGCATCAAGTAACC+AGG + chr2_4:60950763-60950782 Msa0339700:intron 50.0%
AGTCCCTCCGTATCCATTTC+AGG - chr2_4:60950888-60950907 None:intergenic 50.0%
! TCTCAGTTCGCTTTGGCTTC+TGG - chr2_4:60950929-60950948 None:intergenic 50.0%
AAAAAGGCCTGCGAATTCGG+CGG - chr2_4:60950962-60950981 None:intergenic 50.0%
TGTTGCCGAAGTTGAAGCAC+TGG + chr2_4:60950983-60951002 Msa0339700:CDS 50.0%
TCCAGTTCCAAGTCTCTCGA+CGG - chr2_4:60951015-60951034 None:intergenic 50.0%
TCGAGAGACTTGGAACTGGA+AGG + chr2_4:60951015-60951034 Msa0339700:intron 50.0%
TCCTTAATCGACCGTGTGCA+TGG + chr2_4:60951221-60951240 Msa0339700:intron 50.0%
GGCTCACCTCTTCTTTGTTG+AGG - chr2_4:60951869-60951888 None:intergenic 50.0%
GGTTCTTTCCCTGTTTGGAG+AGG + chr2_4:60952247-60952266 Msa0339700:three_prime_UTR 50.0%
CATGGCTGGGAGGGAAACAA+TGG + chr2_4:60948083-60948102 Msa0339700:intron 55.0%
! GAGATATGGTGGCGCAGAAG+AGG + chr2_4:60948307-60948326 Msa0339700:exon 55.0%
!! CAATAAAGTGCCGGCGGCTA+CGG - chr2_4:60948565-60948584 None:intergenic 55.0%
GATCCGTCACCAGGTGTGAT+TGG - chr2_4:60948603-60948622 None:intergenic 55.0%
GTACCAATCGGTACTGCGAC+TGG + chr2_4:60949089-60949108 Msa0339700:CDS 55.0%
GACTGGAGCATGCTGTGTTG+AGG + chr2_4:60949106-60949125 Msa0339700:CDS 55.0%
GGTGGCAATGCCAAGTTGTC+GGG + chr2_4:60949167-60949186 Msa0339700:CDS 55.0%
GTGGCAATGCCAAGTTGTCG+GGG + chr2_4:60949168-60949187 Msa0339700:CDS 55.0%
! TGAAGCCCAAAGCATCCAGC+TGG - chr2_4:60950283-60950302 None:intergenic 55.0%
! GGATGCTTTGGGCTTCACCT+TGG + chr2_4:60950286-60950305 Msa0339700:CDS 55.0%
CGGTACGCACCAACCACTTA+CGG - chr2_4:60950486-60950505 None:intergenic 55.0%
!! CGCTTTGGCTTCTGGTTCAC+TGG - chr2_4:60950921-60950940 None:intergenic 55.0%
GTTGAAGCCGTCGAGAGACT+TGG + chr2_4:60951005-60951024 Msa0339700:intron 55.0%
GCCATGCACACGGTCGATTA+AGG - chr2_4:60951225-60951244 None:intergenic 55.0%
TCCCTCCCAGCCATGCTTGA+GGG - chr2_4:60948078-60948097 None:intergenic 60.0%
TTCCCTCCCAGCCATGCTTG+AGG - chr2_4:60948079-60948098 None:intergenic 60.0%
TGGCAGGGTCAAGCAACACG+TGG + chr2_4:60948241-60948260 Msa0339700:five_prime_UTR 60.0%
CTAGGTGATCGTGTGGCACG+CGG - chr2_4:60948372-60948391 None:intergenic 60.0%
GCGTGCCACACGATCACCTA+GGG + chr2_4:60948371-60948390 Msa0339700:CDS 60.0%
TTATTGGCCACCGTAGCCGC+CGG + chr2_4:60948552-60948571 Msa0339700:CDS 60.0%
!! GCTCCAGTCGCAGTACCGAT+TGG - chr2_4:60949095-60949114 None:intergenic 60.0%
CCACTTACGGCAGAACCCGA+TGG - chr2_4:60950473-60950492 None:intergenic 60.0%
CCATCGGGTTCTGCCGTAAG+TGG + chr2_4:60950470-60950489 Msa0339700:intron 60.0%
CGGGTTCTGCCGTAAGTGGT+TGG + chr2_4:60950474-60950493 Msa0339700:intron 60.0%
GCCGTCGAGAGACTTGGAAC+TGG + chr2_4:60951011-60951030 Msa0339700:intron 60.0%
TCCTCGCCCTCAAGCATGGC+TGG + chr2_4:60948069-60948088 Msa0339700:intron 65.0%
CCTCGCCCTCAAGCATGGCT+GGG + chr2_4:60948070-60948089 Msa0339700:intron 65.0%
GCCCTCAAGCATGGCTGGGA+GGG + chr2_4:60948074-60948093 Msa0339700:intron 65.0%
! CGTGTGGCACGCGGCTTTGT+TGG - chr2_4:60948363-60948382 None:intergenic 65.0%
CGCGTGCCACACGATCACCT+AGG + chr2_4:60948370-60948389 Msa0339700:CDS 65.0%
!! TAAAGTGCCGGCGGCTACGG+TGG - chr2_4:60948562-60948581 None:intergenic 65.0%
CACAACGCCGCCGAATTCGC+AGG + chr2_4:60950952-60950971 Msa0339700:CDS 65.0%
CCCAGCCATGCTTGAGGGCG+AGG - chr2_4:60948073-60948092 None:intergenic 70.0%
CGCCCTCAAGCATGGCTGGG+AGG + chr2_4:60948073-60948092 Msa0339700:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 60947041 60952327 60947041 ID=Msa0339700;Name=Msa0339700
chr2_4 mRNA 60947041 60952327 60947041 ID=Msa0339700-mRNA-1;Parent=Msa0339700;Name=Msa0339700-mRNA-1;_AED=0.13;_eAED=0.13;_QI=220|0.75|0.88|1|0.87|0.77|9|324|669
chr2_4 exon 60947041 60947173 60947041 ID=Msa0339700-mRNA-1:exon:18982;Parent=Msa0339700-mRNA-1
chr2_4 exon 60948225 60948392 60948225 ID=Msa0339700-mRNA-1:exon:18983;Parent=Msa0339700-mRNA-1
chr2_4 exon 60948498 60949416 60948498 ID=Msa0339700-mRNA-1:exon:18984;Parent=Msa0339700-mRNA-1
chr2_4 exon 60949527 60949742 60949527 ID=Msa0339700-mRNA-1:exon:18985;Parent=Msa0339700-mRNA-1
chr2_4 exon 60949839 60949901 60949839 ID=Msa0339700-mRNA-1:exon:18986;Parent=Msa0339700-mRNA-1
chr2_4 exon 60949996 60950075 60949996 ID=Msa0339700-mRNA-1:exon:18987;Parent=Msa0339700-mRNA-1
chr2_4 exon 60950155 60950399 60950155 ID=Msa0339700-mRNA-1:exon:18988;Parent=Msa0339700-mRNA-1
chr2_4 exon 60950785 60951013 60950785 ID=Msa0339700-mRNA-1:exon:18989;Parent=Msa0339700-mRNA-1
chr2_4 exon 60951827 60952327 60951827 ID=Msa0339700-mRNA-1:exon:18990;Parent=Msa0339700-mRNA-1
chr2_4 five_prime_UTR 60947041 60947173 60947041 ID=Msa0339700-mRNA-1:five_prime_utr;Parent=Msa0339700-mRNA-1
chr2_4 five_prime_UTR 60948225 60948311 60948225 ID=Msa0339700-mRNA-1:five_prime_utr;Parent=Msa0339700-mRNA-1
chr2_4 CDS 60948312 60948392 60948312 ID=Msa0339700-mRNA-1:cds;Parent=Msa0339700-mRNA-1
chr2_4 CDS 60948498 60949416 60948498 ID=Msa0339700-mRNA-1:cds;Parent=Msa0339700-mRNA-1
chr2_4 CDS 60949527 60949742 60949527 ID=Msa0339700-mRNA-1:cds;Parent=Msa0339700-mRNA-1
chr2_4 CDS 60949839 60949901 60949839 ID=Msa0339700-mRNA-1:cds;Parent=Msa0339700-mRNA-1
chr2_4 CDS 60949996 60950075 60949996 ID=Msa0339700-mRNA-1:cds;Parent=Msa0339700-mRNA-1
chr2_4 CDS 60950155 60950399 60950155 ID=Msa0339700-mRNA-1:cds;Parent=Msa0339700-mRNA-1
chr2_4 CDS 60950785 60951013 60950785 ID=Msa0339700-mRNA-1:cds;Parent=Msa0339700-mRNA-1
chr2_4 CDS 60951827 60952003 60951827 ID=Msa0339700-mRNA-1:cds;Parent=Msa0339700-mRNA-1
chr2_4 three_prime_UTR 60952004 60952327 60952004 ID=Msa0339700-mRNA-1:three_prime_utr;Parent=Msa0339700-mRNA-1
Gene Sequence

>Msa0339700

ATGGTGGCGCAGAAGAGGATAGATTATGGATTTGTTGGCTATCAGGTGCCAACAAAGCCGCGTGCCACACGATCACCTAGGAAGAGGGATACATTTCAAAGAAGTGTGGAACACAATCAAATGTGTGCGATTGACTTATTGGCCACCGTAGCCGCCGGCACTTTATTGCAAGAGAAACAGAATCCAATCACACCTGGTGACGGATCATCGAAAAAAGATCAACATGGATTCGTTAAAGAGGGCCTAGATGCAAACAAACCATTCAAAGCCGAGCTTCCTAATGAAGCTAGTTGTGACAGAAGGCTTCAACACAGATTTGTTAAGGAACCGGATGCAAATAAGTCGTTGAAAGCCGAGCTTTCTGATGACGTAAGTAGTGACAGGAAATGTTTCTCTGCTTTTTCTTCGCAGGTGTACGGTCAAAATCACTATTCGAAGGAAAATTCGCATCTTGAAATTGATGGTCACTCATGCATGGCTTCTATAGCAACAAGTTCTATTTGCTCAGAGAGGTTGGTTGCTGACGTTTTGGTGGATAGAAAAAGCCACAGTGAAATGAAAAATATTACTAGTAAAGTTGAATTAGGATCCTCTGGATATCCAGATTGTAGTGATTGCAACTTAGATGTTGATGTAAGTAAAGTAAAGGATGAGCTACAAAAATCTGAAAAGGTACCAATCGGTACTGCGACTGGAGCATGCTGTGTTGAGGAACTAATGGATGAAAAACCTCAAGCGCCAATAGGTTTAGGTGGCAATGCCAAGTTGTCGGGGTATAACGATAGTGTGCCTAGTAGCTCGTTGTTCAAAGGTTGCAAAAATGTAACTGTAGTTAGTAGAGATGATGACGAAAACTTTTCAGGGTGTGCTCACCCTAGTTTGAAAACAAAGTCCTTTAGATCAAAGAATTGTATAGGTGATCAAAGAATAAGGAAAAGATTGGCTTCTAAATATCGGAAAGTCGCTCGAGAATCAAAGCACGATACACTTTCTAACAATGTTGTGGATAGAAATTTCAACAGAGTTTACAACAGTCAGAAAAATTATCATAAACGCCAAATATCTCAAATGAATATTCCTTTCAAAAAGAGGAAGATTTTTGACTGCAACTCCACTTCAAATTCTAATGGAAATATCAGAAGTGGCTGCACTTACTATTTGCCCAACAATGACACGAATCAAGGTGTTTCTTGTTCATCATCTCGGATGCGCAAAGATCCTGGAAAGTCATCCTTGGAAGCATATCGTCATTCTGCATTACGATCTAAAGATTCTCATGTGAAGCTTAGGATCAAATCATTTAAAGTGCCGGAGCTTTTTATTGAGATTCCTGAAACTGCAACTGTTGCTTCCTTGAAGAAAGCAGTTATGGAGGCAGTGACTACTCTACTTCAAGGTGGATTGCGAGTTGGTATGATTCTCCATGGAAAGAAACTTAGAGATGACAGTAAAACTCTACTTCAAACTGGAATTTCTCATGATAACCAGCTGGATGCTTTGGGCTTCACCTTGGAGCCTAATTCTTCGCAAAGCTTACCACTCACATGTGCTAAAGATTCTCTTCATGTTCCTACTGCAGACAACATGCCTCTATCTTTACTAGGGTTAGGCAACATTGTTGAAAGTGATCATGATTCAGCACCTTCTTCTATCAATACATTAGGTGAAAAAAGATTGATAGGTTCCAAAGAACTTGTAACTATTCCTGAAATGGATACGGAGGGACTAGCTGTGTTACCAGTGAACCAGAAGCCAAAGCGAACTGAGATCTCACAACGCCGCCGAATTCGCAGGCCTTTTTCTGTTGCCGAAGTTGAAGCACTGGTTGAAGCCGATAAATGGAAAACATTGGTACACACGGCAAGAATATCTCCTCAACAAAGAAGAGGTGAGCCTGTTCCTCAAGAACTTTTGGATAGGGTCCTCACTGCTCATGCATATTGGTCCCAACAGCAACAAACAAAGCAACAACAACTCAAGCATCACCCTGAAACTTGCCTTCTACTTTAA
Protein sequence

>Msa0339700

MVAQKRIDYGFVGYQVPTKPRATRSPRKRDTFQRSVEHNQMCAIDLLATVAAGTLLQEKQNPITPGDGSSKKDQHGFVKEGLDANKPFKAELPNEASCDRRLQHRFVKEPDANKSLKAELSDDVSSDRKCFSAFSSQVYGQNHYSKENSHLEIDGHSCMASIATSSICSERLVADVLVDRKSHSEMKNITSKVELGSSGYPDCSDCNLDVDVSKVKDELQKSEKVPIGTATGACCVEELMDEKPQAPIGLGGNAKLSGYNDSVPSSSLFKGCKNVTVVSRDDDENFSGCAHPSLKTKSFRSKNCIGDQRIRKRLASKYRKVARESKHDTLSNNVVDRNFNRVYNSQKNYHKRQISQMNIPFKKRKIFDCNSTSNSNGNIRSGCTYYLPNNDTNQGVSCSSSRMRKDPGKSSLEAYRHSALRSKDSHVKLRIKSFKVPELFIEIPETATVASLKKAVMEAVTTLLQGGLRVGMILHGKKLRDDSKTLLQTGISHDNQLDALGFTLEPNSSQSLPLTCAKDSLHVPTADNMPLSLLGLGNIVESDHDSAPSSINTLGEKRLIGSKELVTIPEMDTEGLAVLPVNQKPKRTEISQRRRIRRPFSVAEVEALVEADKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQQQQTKQQQLKHHPETCLLL*