AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0265290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265290 MtrunA17_Chr2g0330031 91.777 377 8 1 70 423 1 377 0.0 703
Msa0265290 MtrunA17_Chr1g0205501 32.219 329 165 5 114 418 3 297 7.43e-54 181
Msa0265290 MtrunA17_Chr5g0394431 32.229 332 162 7 114 418 3 298 1.97e-52 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265290 AT1G72880.2 57.825 377 128 7 71 419 8 381 9.67e-143 412
Msa0265290 AT1G72880.1 57.825 377 128 7 71 419 8 381 9.67e-143 412
Msa0265290 AT4G14930.1 32.407 324 164 6 119 418 13 305 7.57e-49 169
Msa0265290 AT4G14930.2 41.951 205 95 2 119 299 13 217 7.10e-48 166

Find 110 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTCCATCTTTGCTTTA+AGG 0.101982 2_2:-65531542 None:intergenic
TTTCCCCTTTCTTCATTTCT+AGG 0.132640 2_2:+65528518 Msa0265290:CDS
TTTAGGGATAAATCTGTTTC+TGG 0.178353 2_2:+65528998 Msa0265290:intron
GAAGTATTTCTTCACTTTAT+TGG 0.213458 2_2:-65530783 None:intergenic
TTCTACTCTGGGGTTGTTGC+TGG 0.231757 2_2:+65529933 Msa0265290:CDS
TGTGTTTCATTGGCTTTATC+TGG 0.234130 2_2:+65529253 Msa0265290:CDS
AAAAGCTTCTTGTAATTTCT+TGG 0.239883 2_2:+65531691 Msa0265290:three_prime_UTR
GCTTGTTCTGCTCAAGTTAA+TGG 0.246805 2_2:+65529052 Msa0265290:CDS
TGGATTTCTGCTGTGATTCC+TGG 0.252539 2_2:+65531436 Msa0265290:CDS
AATTCGATAGGGTTAGGATT+AGG 0.265411 2_2:-65528731 None:intergenic
CTTCATTGTTTCAGTTCCTT+TGG 0.272424 2_2:+65531641 Msa0265290:three_prime_UTR
CGTTGATAAATGCAGCTATC+AGG 0.280646 2_2:+65530147 Msa0265290:CDS
TGAAGAAAGAAAATTGAAAT+TGG 0.282214 2_2:-65528475 None:intergenic
TTTATTGAAATGTGCTCTAA+TGG 0.283892 2_2:+65531831 Msa0265290:three_prime_UTR
TTCTTCACTTTATTGGTATC+AGG 0.291732 2_2:-65530776 None:intergenic
TATATCATGTTATAGGAAAA+AGG 0.296377 2_2:+65530076 Msa0265290:intron
ATTCGATAGGGTTAGGATTA+GGG 0.300748 2_2:-65528730 None:intergenic
CTATCCAACTGGTCATTTCT+TGG 0.301621 2_2:+65530500 Msa0265290:CDS
CAATCCAAAGTTTAACTATC+TGG 0.306685 2_2:-65531804 None:intergenic
GCCAATCCACAAGGTGGCCT+TGG 0.331528 2_2:+65530522 Msa0265290:CDS
TCCTGCGGATTGTGTTTCAT+TGG 0.339731 2_2:+65529243 Msa0265290:CDS
GAAATGAAGAAAGGGGAAAA+AGG 0.341908 2_2:-65528514 None:intergenic
TTTGAAACAGCTAACCAGTT+TGG 0.357202 2_2:-65530471 None:intergenic
TTGGAGATTATTGAATCAAC+TGG 0.357915 2_2:+65530740 Msa0265290:CDS
GCTGTTTGTGAGCAAGATAA+TGG 0.364803 2_2:-65528768 None:intergenic
TTTCTTCCTTAAAGCAAAGA+TGG 0.380472 2_2:+65531536 Msa0265290:three_prime_UTR
TTCAAACGTCAACTTCTGAT+TGG 0.384107 2_2:+65531416 Msa0265290:CDS
CATTATCAATATCATTAAAC+TGG 0.385947 2_2:+65529988 Msa0265290:CDS
TCATCGAATTCGATAGGGTT+AGG 0.387109 2_2:-65528737 None:intergenic
ATTGAAATCAGCTATTGAAT+TGG 0.387679 2_2:-65531582 None:intergenic
AAAGCTTCTTGTAATTTCTT+GGG 0.388567 2_2:+65531692 Msa0265290:three_prime_UTR
TTCCCCTTTCTTCATTTCTA+GGG 0.392444 2_2:+65528519 Msa0265290:CDS
GAGAAGTGCTTCTTGAAGAT+TGG 0.399004 2_2:-65528639 None:intergenic
CTGGGGTTGTTGCTGGAGCT+AGG 0.415674 2_2:+65529940 Msa0265290:CDS
TGGGGTTGTTGCTGGAGCTA+GGG 0.421199 2_2:+65529941 Msa0265290:CDS
CTGTTTGTGAGCAAGATAAT+GGG 0.422044 2_2:-65528767 None:intergenic
GGTCTTCAGTTTGCACAGCT+TGG 0.423296 2_2:+65530543 Msa0265290:CDS
TGAAGATTGGAAACGAGGCC+CGG 0.439122 2_2:-65528626 None:intergenic
TCTTCCAGATAGTTAAACTT+TGG 0.439867 2_2:+65531800 Msa0265290:three_prime_UTR
TGTGAGCAAGATAATGGGTT+TGG 0.440916 2_2:-65528762 None:intergenic
AAGTCAAGAAACTGATTTCA+AGG 0.442158 2_2:+65530103 Msa0265290:CDS
AGAAATAGATGACGATGATC+TGG 0.446591 2_2:+65531164 Msa0265290:CDS
GAAGATTGGAAACGAGGCCC+GGG 0.453439 2_2:-65528625 None:intergenic
TTTAATGATATTGATAATGA+TGG 0.457599 2_2:-65529984 None:intergenic
ATTGAATCAACTGGAGCTGC+AGG 0.468057 2_2:+65530749 Msa0265290:CDS
GATATTACAAACAGACCAAA+TGG 0.470062 2_2:-65531732 None:intergenic
AATGCTCCAGGTTCTACTCT+GGG 0.470332 2_2:+65529922 Msa0265290:intron
AAACCCTAGAAATGAAGAAA+GGG 0.471301 2_2:-65528522 None:intergenic
AAATGCTCCAGGTTCTACTC+TGG 0.471886 2_2:+65529921 Msa0265290:intron
AGCTATCAGGGATGCTGAAA+AGG 0.478095 2_2:+65530160 Msa0265290:CDS
TGTGGAGATCCACTCCAAAC+TGG 0.479831 2_2:+65530457 Msa0265290:CDS
TCAAATAGCCGCTATCCAAC+TGG 0.485041 2_2:+65530489 Msa0265290:CDS
TCCACGTACACCGTTAGAAC+CGG 0.490654 2_2:+65528416 Msa0265290:CDS
ACCAAGGCCACCTTGTGGAT+TGG 0.492533 2_2:-65530523 None:intergenic
TCGTTTCAAGATGATGCCCC+CGG 0.496104 2_2:+65528607 Msa0265290:CDS
AGGATTAGGGTTATCATCGT+TGG 0.497932 2_2:-65528717 None:intergenic
TTGTTCAGGGCGCAGCTCGT+CGG 0.499499 2_2:+65530696 Msa0265290:intron
AAAACCCTAGAAATGAAGAA+AGG 0.500295 2_2:-65528523 None:intergenic
CGCAAACATGGACATTGTAA+AGG 0.507879 2_2:-65528847 None:intergenic
TTGGATTCATCGAATTCGAT+AGG 0.510175 2_2:-65528743 None:intergenic
TGAATATCACTCTCAATATG+AGG 0.515335 2_2:-65531397 None:intergenic
ATCATCGTTGGTGGAAGAAA+CGG 0.515938 2_2:-65528705 None:intergenic
TTGTTGCTCAAAGGTGATCT+CGG 0.524280 2_2:-65530221 None:intergenic
TTTGATTCATCTTGTTGTGA+AGG 0.524748 2_2:-65528677 None:intergenic
ATTAGGGTTATCATCGTTGG+TGG 0.527462 2_2:-65528714 None:intergenic
AGGAACTGAAACAATGAAGA+AGG 0.531500 2_2:-65531637 None:intergenic
AAGCAAAGATGGAGCAGAAG+TGG 0.533404 2_2:+65531547 Msa0265290:three_prime_UTR
TTACAGACCTTGTTGCTCAA+AGG 0.534339 2_2:-65530230 None:intergenic
GGTTGTTGCTGGAGCTAGGG+AGG 0.535432 2_2:+65529944 Msa0265290:CDS
GTTGATAAATGCAGCTATCA+GGG 0.535579 2_2:+65530148 Msa0265290:CDS
TTGAGCAGAACAAGCTTCCA+CGG 0.545035 2_2:-65529044 None:intergenic
TCAGGGCGCAGCTCGTCGGT+TGG 0.546235 2_2:+65530700 Msa0265290:intron
AGATGAGATGATAGATAGAC+CGG 0.547804 2_2:-65528435 None:intergenic
GAAGAACGAGAGCTTCAACT+AGG 0.548339 2_2:-65528820 None:intergenic
ATATGAGGAGAAAGAGATAC+CGG 0.550193 2_2:-65531382 None:intergenic
TGGATTCATCGAATTCGATA+GGG 0.554963 2_2:-65528742 None:intergenic
GATTACAGAGCACTTGAAAG+TGG 0.567031 2_2:+65531186 Msa0265290:CDS
ATTTCTGCTGTGATTCCTGG+TGG 0.569344 2_2:+65531439 Msa0265290:CDS
GCCAATGAAACACAATCCGC+AGG 0.578293 2_2:-65529244 None:intergenic
GATAGATAGACCGGTTCTAA+CGG 0.581569 2_2:-65528426 None:intergenic
AAGATTGGAAACGAGGCCCG+GGG 0.581766 2_2:-65528624 None:intergenic
CATTTCTTGGCCAATCCACA+AGG 0.583050 2_2:+65530513 Msa0265290:CDS
AATTGACTAAGCAAAGTATG+TGG 0.583954 2_2:+65530439 Msa0265290:CDS
GAAACAGGTTGCAGTGACTC+CGG 0.585349 2_2:+65531363 Msa0265290:intron
CAAATCAAGAAATAACTAAG+TGG 0.588283 2_2:-65531664 None:intergenic
ACGATTGAGGAACGCAAACA+TGG 0.602918 2_2:-65528859 None:intergenic
ACCGGTTCTAACGGTGTACG+TGG 0.602932 2_2:-65528417 None:intergenic
CTTCTTGAAGATTGGAAACG+AGG 0.607887 2_2:-65528631 None:intergenic
AGAAATAACTAAGTGGCCAA+AGG 0.608629 2_2:-65531657 None:intergenic
CTGATAGCTGCATTTATCAA+CGG 0.609132 2_2:-65530146 None:intergenic
ACCTGAAATCTCAAAAGCAG+TGG 0.609300 2_2:-65529077 None:intergenic
AACAGCTAACCAGTTTGGAG+TGG 0.612572 2_2:-65530466 None:intergenic
ATCTTGCTCACAAACAGCGA+TGG 0.615557 2_2:+65528773 Msa0265290:CDS
TTGGCCAAGAAATGACCAGT+TGG 0.621148 2_2:-65530504 None:intergenic
TAGGATACTTACAGCTGCAG+AGG 0.621441 2_2:-65530574 None:intergenic
AACCCTAGAAATGAAGAAAG+GGG 0.628453 2_2:-65528521 None:intergenic
TTACAGCTGCAGAGGCATCT+CGG 0.632794 2_2:-65530566 None:intergenic
GAGATCACCTTTGAGCAACA+AGG 0.634652 2_2:+65530223 Msa0265290:CDS
AGCGATGGAGTTGAATCACC+AGG 0.636526 2_2:+65528788 Msa0265290:CDS
TAATAATTCAGGGACTCCTG+CGG 0.636885 2_2:+65529228 Msa0265290:intron
TCAACTAGGTGTGTAAGACC+TGG 0.638164 2_2:-65528806 None:intergenic
AGAAATGACCAGTTGGATAG+CGG 0.646911 2_2:-65530497 None:intergenic
GAAGAAATACTTCAGACTAG+AGG 0.658962 2_2:+65530793 Msa0265290:CDS
ATGCTCCAGGTTCTACTCTG+GGG 0.670311 2_2:+65529923 Msa0265290:intron
TTCTTGGCCAATCCACAAGG+TGG 0.682503 2_2:+65530516 Msa0265290:CDS
TGTTACGATTCGAGAAACCG+TGG 0.686133 2_2:+65529027 Msa0265290:CDS
TGAAGACCAAGGCCACCTTG+TGG 0.695105 2_2:-65530528 None:intergenic
GCTAGGGAGGCATTATTATG+CGG 0.703521 2_2:+65529957 Msa0265290:CDS
GCTGTGCAAACTGAAGACCA+AGG 0.760862 2_2:-65530539 None:intergenic
AGATTGGAAACGAGGCCCGG+GGG 0.763136 2_2:-65528623 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTTGATTTTTTTGT+TGG + chr2_2:65528919-65528938 Msa0265290:intron 10.0%
!!! TAAATCAAATTTTTGTTTTT+TGG + chr2_2:65529124-65529143 Msa0265290:intron 10.0%
!!! AAATCAAATTTTTGTTTTTT+GGG + chr2_2:65529125-65529144 Msa0265290:intron 10.0%
!! TTAGTAATTTATAATAATTC+AGG + chr2_2:65529217-65529236 Msa0265290:intron 10.0%
!! TAGTAATTTATAATAATTCA+GGG + chr2_2:65529218-65529237 Msa0265290:intron 10.0%
!!! AATCAAATTTTTGTTTTTTG+GGG + chr2_2:65529126-65529145 Msa0265290:intron 15.0%
!!! TTTAATGATATTGATAATGA+TGG - chr2_2:65529987-65530006 None:intergenic 15.0%
!! TGAAGAAAGAAAATTGAAAT+TGG - chr2_2:65528478-65528497 None:intergenic 20.0%
!!! ATCAAATTTTTGTTTTTTGG+GGG + chr2_2:65529127-65529146 Msa0265290:intron 20.0%
!!! TGATTATGTAAAATTGATTC+TGG + chr2_2:65529385-65529404 Msa0265290:intron 20.0%
!!! TCAAGTTAGAATAATTTTGA+AGG + chr2_2:65529528-65529547 Msa0265290:intron 20.0%
!! CATTATCAATATCATTAAAC+TGG + chr2_2:65529988-65530007 Msa0265290:CDS 20.0%
!! TTTCATTAGAGATTATGAAT+TGG + chr2_2:65530048-65530067 Msa0265290:intron 20.0%
!! TATATCATGTTATAGGAAAA+AGG + chr2_2:65530076-65530095 Msa0265290:intron 20.0%
!!! ATATTCAGAAAGCAATTTTT+GGG - chr2_2:65530194-65530213 None:intergenic 20.0%
!!! AATATTCAGAAAGCAATTTT+TGG - chr2_2:65530195-65530214 None:intergenic 20.0%
!! GAACAGATTAATAATCTAAA+AGG - chr2_2:65531027-65531046 None:intergenic 20.0%
!! ATTTTTGTTAGTTGCTGAAA+TGG + chr2_2:65528969-65528988 Msa0265290:intron 25.0%
! TAATAAATGCTAACCAAAAC+AGG - chr2_2:65529301-65529320 None:intergenic 25.0%
! CAAACACACAATTAATTTAC+GGG - chr2_2:65529331-65529350 None:intergenic 25.0%
! CCAAACACACAATTAATTTA+CGG - chr2_2:65529332-65529351 None:intergenic 25.0%
!!! CTATACTCTAGAATCAATTT+TGG + chr2_2:65529597-65529616 Msa0265290:intron 25.0%
!!! TTTGAATTTCAGGTTATTAG+TGG + chr2_2:65529682-65529701 Msa0265290:intron 25.0%
!!! TTGAATTTCAGGTTATTAGT+GGG + chr2_2:65529683-65529702 Msa0265290:intron 25.0%
!!! ATAAATCTGAGTTCTGAAAT+TGG + chr2_2:65529772-65529791 Msa0265290:intron 25.0%
! GAATATTACAAGACAGAAAA+TGG - chr2_2:65529813-65529832 None:intergenic 25.0%
! AAACACAAATCTCTATAACA+AGG - chr2_2:65529888-65529907 None:intergenic 25.0%
! ATATCATTAAACTGGTAAGT+TGG + chr2_2:65529996-65530015 Msa0265290:intron 25.0%
! GGTATCATATATCATGTTAT+AGG + chr2_2:65530069-65530088 Msa0265290:intron 25.0%
!! GAAGTATTTCTTCACTTTAT+TGG - chr2_2:65530786-65530805 None:intergenic 25.0%
! AACACATAATGTTGTATGAA+GGG - chr2_2:65531049-65531068 None:intergenic 25.0%
! TAACACATAATGTTGTATGA+AGG - chr2_2:65531050-65531069 None:intergenic 25.0%
! ACTATATTGTATGTTCTTGA+TGG + chr2_2:65531262-65531281 Msa0265290:intron 25.0%
!! TCTTGATGGTAATATCTTTA+TGG + chr2_2:65531276-65531295 Msa0265290:intron 25.0%
!! CTTGATGGTAATATCTTTAT+GGG + chr2_2:65531277-65531296 Msa0265290:intron 25.0%
! ATTGAAATCAGCTATTGAAT+TGG - chr2_2:65531585-65531604 None:intergenic 25.0%
! CAAATCAAGAAATAACTAAG+TGG - chr2_2:65531667-65531686 None:intergenic 25.0%
! AAAAGCTTCTTGTAATTTCT+TGG + chr2_2:65531691-65531710 Msa0265290:three_prime_UTR 25.0%
! AAAGCTTCTTGTAATTTCTT+GGG + chr2_2:65531692-65531711 Msa0265290:three_prime_UTR 25.0%
!!! TGTTTTAGAAAAATGCCATT+TGG + chr2_2:65531717-65531736 Msa0265290:three_prime_UTR 25.0%
! TTTATTGAAATGTGCTCTAA+TGG + chr2_2:65531831-65531850 Msa0265290:three_prime_UTR 25.0%
AAACCCTAGAAATGAAGAAA+GGG - chr2_2:65528525-65528544 None:intergenic 30.0%
AAAACCCTAGAAATGAAGAA+AGG - chr2_2:65528526-65528545 None:intergenic 30.0%
! TTTGATTCATCTTGTTGTGA+AGG - chr2_2:65528680-65528699 None:intergenic 30.0%
TTTAGGGATAAATCTGTTTC+TGG + chr2_2:65528998-65529017 Msa0265290:intron 30.0%
CCGTAAATTAATTGTGTGTT+TGG + chr2_2:65529329-65529348 Msa0265290:intron 30.0%
TCTAACTTGAAGCTAGAATT+TGG - chr2_2:65529518-65529537 None:intergenic 30.0%
CATGATGTGATTTGAATTTC+AGG + chr2_2:65529672-65529691 Msa0265290:intron 30.0%
AGGTTATTAGTGGGATTAAT+CGG + chr2_2:65529692-65529711 Msa0265290:intron 30.0%
ACATGTAAGTTGCTAACTTA+TGG + chr2_2:65529734-65529753 Msa0265290:intron 30.0%
TAAGTTGCTAACTTATGGTT+AGG + chr2_2:65529739-65529758 Msa0265290:intron 30.0%
AAGTTGCTAACTTATGGTTA+GGG + chr2_2:65529740-65529759 Msa0265290:intron 30.0%
TATAACAAGGCTGCAAATTA+TGG - chr2_2:65529875-65529894 None:intergenic 30.0%
! AAGTCAAGAAACTGATTTCA+AGG + chr2_2:65530103-65530122 Msa0265290:CDS 30.0%
CACAATGCAGTAAAACATAT+GGG - chr2_2:65530291-65530310 None:intergenic 30.0%
TCTTTCAATTGTACAAACTC+TGG + chr2_2:65530335-65530354 Msa0265290:intron 30.0%
AATTGACTAAGCAAAGTATG+TGG + chr2_2:65530439-65530458 Msa0265290:CDS 30.0%
CACATGTTTGTATGTAATGT+AGG - chr2_2:65530596-65530615 None:intergenic 30.0%
! TGATGTTTTCTGTCTATTCT+TGG + chr2_2:65530622-65530641 Msa0265290:intron 30.0%
! GATGTTTTCTGTCTATTCTT+GGG + chr2_2:65530623-65530642 Msa0265290:intron 30.0%
!! TTGAATCCATGTTTTGTTCA+GGG + chr2_2:65530683-65530702 Msa0265290:intron 30.0%
TTGGAGATTATTGAATCAAC+TGG + chr2_2:65530740-65530759 Msa0265290:CDS 30.0%
TTCTTCACTTTATTGGTATC+AGG - chr2_2:65530779-65530798 None:intergenic 30.0%
GTACAGAAGATAACAATTTG+TGG + chr2_2:65530922-65530941 Msa0265290:intron 30.0%
AGATAACAATTTGTGGAGAA+TGG + chr2_2:65530929-65530948 Msa0265290:intron 30.0%
TGAATATCACTCTCAATATG+AGG - chr2_2:65531400-65531419 None:intergenic 30.0%
!!! TTTTTAATTTACTGTCCACC+AGG - chr2_2:65531457-65531476 None:intergenic 30.0%
TTTCTTCCTTAAAGCAAAGA+TGG + chr2_2:65531536-65531555 Msa0265290:three_prime_UTR 30.0%
GATATTACAAACAGACCAAA+TGG - chr2_2:65531735-65531754 None:intergenic 30.0%
ATCTATTGCTAGCAAAAAAC+TGG + chr2_2:65531752-65531771 Msa0265290:three_prime_UTR 30.0%
TCTTCCAGATAGTTAAACTT+TGG + chr2_2:65531800-65531819 Msa0265290:three_prime_UTR 30.0%
CAATCCAAAGTTTAACTATC+TGG - chr2_2:65531807-65531826 None:intergenic 30.0%
AGATGAGATGATAGATAGAC+CGG - chr2_2:65528438-65528457 None:intergenic 35.0%
GAAATGAAGAAAGGGGAAAA+AGG - chr2_2:65528517-65528536 None:intergenic 35.0%
TTTCCCCTTTCTTCATTTCT+AGG + chr2_2:65528518-65528537 Msa0265290:CDS 35.0%
TTCCCCTTTCTTCATTTCTA+GGG + chr2_2:65528519-65528538 Msa0265290:CDS 35.0%
AACCCTAGAAATGAAGAAAG+GGG - chr2_2:65528524-65528543 None:intergenic 35.0%
ATTCGATAGGGTTAGGATTA+GGG - chr2_2:65528733-65528752 None:intergenic 35.0%
AATTCGATAGGGTTAGGATT+AGG - chr2_2:65528734-65528753 None:intergenic 35.0%
TGGATTCATCGAATTCGATA+GGG - chr2_2:65528745-65528764 None:intergenic 35.0%
TTGGATTCATCGAATTCGAT+AGG - chr2_2:65528746-65528765 None:intergenic 35.0%
CTGTTTGTGAGCAAGATAAT+GGG - chr2_2:65528770-65528789 None:intergenic 35.0%
AAAAAAAGAACGCACGATTG+AGG - chr2_2:65528875-65528894 None:intergenic 35.0%
!! TGTGTTTCATTGGCTTTATC+TGG + chr2_2:65529253-65529272 Msa0265290:CDS 35.0%
! TATGTGTGGTTTAACTTCTG+GGG - chr2_2:65529626-65529645 None:intergenic 35.0%
! GTATGTGTGGTTTAACTTCT+GGG - chr2_2:65529627-65529646 None:intergenic 35.0%
! TGTATGTGTGGTTTAACTTC+TGG - chr2_2:65529628-65529647 None:intergenic 35.0%
GGTTATTAGTGGGATTAATC+GGG + chr2_2:65529693-65529712 Msa0265290:intron 35.0%
GTTATTAGTGGGATTAATCG+GGG + chr2_2:65529694-65529713 Msa0265290:intron 35.0%
!! AGTTGGTGATTCTATACATC+TGG + chr2_2:65530013-65530032 Msa0265290:intron 35.0%
CTGATAGCTGCATTTATCAA+CGG - chr2_2:65530149-65530168 None:intergenic 35.0%
! GTTGATAAATGCAGCTATCA+GGG + chr2_2:65530148-65530167 Msa0265290:CDS 35.0%
GCACAATGCAGTAAAACATA+TGG - chr2_2:65530292-65530311 None:intergenic 35.0%
GTACAAACTCTGGTATTCTA+AGG + chr2_2:65530345-65530364 Msa0265290:intron 35.0%
! AGTGGTATCCTTTTATTGAC+AGG + chr2_2:65530410-65530429 Msa0265290:intron 35.0%
! GTGGTATCCTTTTATTGACA+GGG + chr2_2:65530411-65530430 Msa0265290:intron 35.0%
! TTTGAAGCCCTGTCAATAAA+AGG - chr2_2:65530421-65530440 None:intergenic 35.0%
! TTTGAAACAGCTAACCAGTT+TGG - chr2_2:65530474-65530493 None:intergenic 35.0%
!! CTTGAATCCATGTTTTGTTC+AGG + chr2_2:65530682-65530701 Msa0265290:intron 35.0%
GAAGAAATACTTCAGACTAG+AGG + chr2_2:65530793-65530812 Msa0265290:CDS 35.0%
ACTTCAGACTAGAGGTAAAT+AGG + chr2_2:65530801-65530820 Msa0265290:intron 35.0%
GCAAAGAACAGTATAACTCA+TGG - chr2_2:65531005-65531024 None:intergenic 35.0%
! CTACTTGTACCTTCAGTTTT+TGG + chr2_2:65531128-65531147 Msa0265290:intron 35.0%
AGAAATAGATGACGATGATC+TGG + chr2_2:65531164-65531183 Msa0265290:CDS 35.0%
ATATGAGGAGAAAGAGATAC+CGG - chr2_2:65531385-65531404 None:intergenic 35.0%
TTCAAACGTCAACTTCTGAT+TGG + chr2_2:65531416-65531435 Msa0265290:CDS 35.0%
AGGAACTGAAACAATGAAGA+AGG - chr2_2:65531640-65531659 None:intergenic 35.0%
CTTCATTGTTTCAGTTCCTT+TGG + chr2_2:65531641-65531660 Msa0265290:three_prime_UTR 35.0%
AGAAATAACTAAGTGGCCAA+AGG - chr2_2:65531660-65531679 None:intergenic 35.0%
! GATAGATAGACCGGTTCTAA+CGG - chr2_2:65528429-65528448 None:intergenic 40.0%
CTTCTTGAAGATTGGAAACG+AGG - chr2_2:65528634-65528653 None:intergenic 40.0%
!! GAGAAGTGCTTCTTGAAGAT+TGG - chr2_2:65528642-65528661 None:intergenic 40.0%
! ATCATCGTTGGTGGAAGAAA+CGG - chr2_2:65528708-65528727 None:intergenic 40.0%
ATTAGGGTTATCATCGTTGG+TGG - chr2_2:65528717-65528736 None:intergenic 40.0%
AGGATTAGGGTTATCATCGT+TGG - chr2_2:65528720-65528739 None:intergenic 40.0%
TCATCGAATTCGATAGGGTT+AGG - chr2_2:65528740-65528759 None:intergenic 40.0%
!! TGTGAGCAAGATAATGGGTT+TGG - chr2_2:65528765-65528784 None:intergenic 40.0%
GCTGTTTGTGAGCAAGATAA+TGG - chr2_2:65528771-65528790 None:intergenic 40.0%
CGCAAACATGGACATTGTAA+AGG - chr2_2:65528850-65528869 None:intergenic 40.0%
!! TGCTGAAATGGTGTTGCTTT+AGG + chr2_2:65528981-65529000 Msa0265290:intron 40.0%
!! GCTGAAATGGTGTTGCTTTA+GGG + chr2_2:65528982-65529001 Msa0265290:intron 40.0%
GCTTGTTCTGCTCAAGTTAA+TGG + chr2_2:65529052-65529071 Msa0265290:CDS 40.0%
ACCTGAAATCTCAAAAGCAG+TGG - chr2_2:65529080-65529099 None:intergenic 40.0%
TAATAATTCAGGGACTCCTG+CGG + chr2_2:65529228-65529247 Msa0265290:intron 40.0%
!!! TATCTGGAGCTTTGTTTTCG+TGG + chr2_2:65529269-65529288 Msa0265290:intron 40.0%
TAATTGTGTGTTTGGTCCTG+CGG + chr2_2:65529337-65529356 Msa0265290:intron 40.0%
AAATCAACTCTTGTTACCGC+AGG - chr2_2:65529356-65529375 None:intergenic 40.0%
! CAACTTGCTTTCACACATGA+AGG - chr2_2:65529451-65529470 None:intergenic 40.0%
CAGCACTATTAGTGTATGTG+TGG - chr2_2:65529640-65529659 None:intergenic 40.0%
!!! ACCTGGAGCATTTTAAAGCA+TGG - chr2_2:65529914-65529933 None:intergenic 40.0%
! CGTTGATAAATGCAGCTATC+AGG + chr2_2:65530147-65530166 Msa0265290:CDS 40.0%
TTGTTGCTCAAAGGTGATCT+CGG - chr2_2:65530224-65530243 None:intergenic 40.0%
TTACAGACCTTGTTGCTCAA+AGG - chr2_2:65530233-65530252 None:intergenic 40.0%
! TGCAAATGCTCTAGTCTTCT+AGG + chr2_2:65530309-65530328 Msa0265290:intron 40.0%
!! TTCTAAGGCGTTTGGCTAAT+TGG + chr2_2:65530360-65530379 Msa0265290:intron 40.0%
TCAATTGTACACTGATGCAG+TGG + chr2_2:65530392-65530411 Msa0265290:intron 40.0%
AGAAATGACCAGTTGGATAG+CGG - chr2_2:65530500-65530519 None:intergenic 40.0%
CTATCCAACTGGTCATTTCT+TGG + chr2_2:65530500-65530519 Msa0265290:CDS 40.0%
GGCTACGCAGAAAAAGAATT+TGG + chr2_2:65530721-65530740 Msa0265290:CDS 40.0%
TCAGACTAGAGGTAAATAGG+AGG + chr2_2:65530804-65530823 Msa0265290:intron 40.0%
! GATTACAGAGCACTTGAAAG+TGG + chr2_2:65531186-65531205 Msa0265290:CDS 40.0%
TGAATCCGTCAGAATGAGAA+GGG - chr2_2:65531328-65531347 None:intergenic 40.0%
ATGAATCCGTCAGAATGAGA+AGG - chr2_2:65531329-65531348 None:intergenic 40.0%
TCTGCTCCATCTTTGCTTTA+AGG - chr2_2:65531545-65531564 None:intergenic 40.0%
ATCTTGCTCACAAACAGCGA+TGG + chr2_2:65528773-65528792 Msa0265290:CDS 45.0%
TCAACTAGGTGTGTAAGACC+TGG - chr2_2:65528809-65528828 None:intergenic 45.0%
GAAGAACGAGAGCTTCAACT+AGG - chr2_2:65528823-65528842 None:intergenic 45.0%
ACGATTGAGGAACGCAAACA+TGG - chr2_2:65528862-65528881 None:intergenic 45.0%
TGTTACGATTCGAGAAACCG+TGG + chr2_2:65529027-65529046 Msa0265290:CDS 45.0%
TTGAGCAGAACAAGCTTCCA+CGG - chr2_2:65529047-65529066 None:intergenic 45.0%
!!! GCCACTGCTTTTGAGATTTC+AGG + chr2_2:65529076-65529095 Msa0265290:CDS 45.0%
! TCCTGCGGATTGTGTTTCAT+TGG + chr2_2:65529243-65529262 Msa0265290:CDS 45.0%
! TTCGTGGTCAAAGCCTGTTT+TGG + chr2_2:65529285-65529304 Msa0265290:intron 45.0%
ATTAATCGGGGATCAAGCTG+CGG + chr2_2:65529706-65529725 Msa0265290:intron 45.0%
!! GCCATGCTTTAAAATGCTCC+AGG + chr2_2:65529910-65529929 Msa0265290:intron 45.0%
AAATGCTCCAGGTTCTACTC+TGG + chr2_2:65529921-65529940 Msa0265290:intron 45.0%
AATGCTCCAGGTTCTACTCT+GGG + chr2_2:65529922-65529941 Msa0265290:intron 45.0%
!! GCTAGGGAGGCATTATTATG+CGG + chr2_2:65529957-65529976 Msa0265290:CDS 45.0%
AGCTATCAGGGATGCTGAAA+AGG + chr2_2:65530160-65530179 Msa0265290:CDS 45.0%
GAGATCACCTTTGAGCAACA+AGG + chr2_2:65530223-65530242 Msa0265290:CDS 45.0%
!! CTCTGGTATTCTAAGGCGTT+TGG + chr2_2:65530352-65530371 Msa0265290:intron 45.0%
AACAGCTAACCAGTTTGGAG+TGG - chr2_2:65530469-65530488 None:intergenic 45.0%
TCAAATAGCCGCTATCCAAC+TGG + chr2_2:65530489-65530508 Msa0265290:CDS 45.0%
TTGGCCAAGAAATGACCAGT+TGG - chr2_2:65530507-65530526 None:intergenic 45.0%
CATTTCTTGGCCAATCCACA+AGG + chr2_2:65530513-65530532 Msa0265290:CDS 45.0%
TAGGATACTTACAGCTGCAG+AGG - chr2_2:65530577-65530596 None:intergenic 45.0%
ATTGAATCAACTGGAGCTGC+AGG + chr2_2:65530749-65530768 Msa0265290:CDS 45.0%
GACTAGAGGTAAATAGGAGG+TGG + chr2_2:65530807-65530826 Msa0265290:intron 45.0%
TAGAGGTAAATAGGAGGTGG+AGG + chr2_2:65530810-65530829 Msa0265290:intron 45.0%
GCTGCTTGTCCAAAAACTGA+AGG - chr2_2:65531140-65531159 None:intergenic 45.0%
!! TCAGTTTTTGGACAAGCAGC+AGG + chr2_2:65531140-65531159 Msa0265290:intron 45.0%
GAATGAGAAGGGGGGAAAAT+TGG - chr2_2:65531317-65531336 None:intergenic 45.0%
AATCCGTCAGAATGAGAAGG+GGG - chr2_2:65531326-65531345 None:intergenic 45.0%
GAATCCGTCAGAATGAGAAG+GGG - chr2_2:65531327-65531346 None:intergenic 45.0%
ACGGATTCATGCATGTGCTT+TGG + chr2_2:65531339-65531358 Msa0265290:intron 45.0%
!! TGCATGTGCTTTGGAGAAAC+AGG + chr2_2:65531348-65531367 Msa0265290:intron 45.0%
TGGATTTCTGCTGTGATTCC+TGG + chr2_2:65531436-65531455 Msa0265290:CDS 45.0%
ATTTCTGCTGTGATTCCTGG+TGG + chr2_2:65531439-65531458 Msa0265290:CDS 45.0%
AAGCAAAGATGGAGCAGAAG+TGG + chr2_2:65531547-65531566 Msa0265290:three_prime_UTR 45.0%
TCCACGTACACCGTTAGAAC+CGG + chr2_2:65528416-65528435 Msa0265290:CDS 50.0%
TCGTTTCAAGATGATGCCCC+CGG + chr2_2:65528607-65528626 Msa0265290:CDS 50.0%
TGAAGATTGGAAACGAGGCC+CGG - chr2_2:65528629-65528648 None:intergenic 50.0%
AGCGATGGAGTTGAATCACC+AGG + chr2_2:65528788-65528807 Msa0265290:CDS 50.0%
GCCAATGAAACACAATCCGC+AGG - chr2_2:65529247-65529266 None:intergenic 50.0%
ATGCTCCAGGTTCTACTCTG+GGG + chr2_2:65529923-65529942 Msa0265290:intron 50.0%
AACAACCCCAGAGTAGAACC+TGG - chr2_2:65529931-65529950 None:intergenic 50.0%
!! TTCTACTCTGGGGTTGTTGC+TGG + chr2_2:65529933-65529952 Msa0265290:CDS 50.0%
TGTGGAGATCCACTCCAAAC+TGG + chr2_2:65530457-65530476 Msa0265290:CDS 50.0%
TTCTTGGCCAATCCACAAGG+TGG + chr2_2:65530516-65530535 Msa0265290:CDS 50.0%
GCTGTGCAAACTGAAGACCA+AGG - chr2_2:65530542-65530561 None:intergenic 50.0%
GGTCTTCAGTTTGCACAGCT+TGG + chr2_2:65530543-65530562 Msa0265290:CDS 50.0%
!! TTACAGCTGCAGAGGCATCT+CGG - chr2_2:65530569-65530588 None:intergenic 50.0%
AGGTAAATAGGAGGTGGAGG+AGG + chr2_2:65530813-65530832 Msa0265290:intron 50.0%
TAAATAGGAGGTGGAGGAGG+AGG + chr2_2:65530816-65530835 Msa0265290:intron 50.0%
TTCCCCCCTTCTCATTCTGA+CGG + chr2_2:65531320-65531339 Msa0265290:intron 50.0%
ATCCGTCAGAATGAGAAGGG+GGG - chr2_2:65531325-65531344 None:intergenic 50.0%
GAAACAGGTTGCAGTGACTC+CGG + chr2_2:65531363-65531382 Msa0265290:intron 50.0%
! ACCGGTTCTAACGGTGTACG+TGG - chr2_2:65528420-65528439 None:intergenic 55.0%
CGTTTCAAGATGATGCCCCC+GGG + chr2_2:65528608-65528627 Msa0265290:CDS 55.0%
AAGATTGGAAACGAGGCCCG+GGG - chr2_2:65528627-65528646 None:intergenic 55.0%
GAAGATTGGAAACGAGGCCC+GGG - chr2_2:65528628-65528647 None:intergenic 55.0%
TGGGGTTGTTGCTGGAGCTA+GGG + chr2_2:65529941-65529960 Msa0265290:CDS 55.0%
ACCAAGGCCACCTTGTGGAT+TGG - chr2_2:65530526-65530545 None:intergenic 55.0%
TGAAGACCAAGGCCACCTTG+TGG - chr2_2:65530531-65530550 None:intergenic 55.0%
GCTGCGCCCTGAACAAAACA+TGG - chr2_2:65530692-65530711 None:intergenic 55.0%
AGATTGGAAACGAGGCCCGG+GGG - chr2_2:65528626-65528645 None:intergenic 60.0%
CTGGGGTTGTTGCTGGAGCT+AGG + chr2_2:65529940-65529959 Msa0265290:CDS 60.0%
GGTTGTTGCTGGAGCTAGGG+AGG + chr2_2:65529944-65529963 Msa0265290:CDS 60.0%
GCCAATCCACAAGGTGGCCT+TGG + chr2_2:65530522-65530541 Msa0265290:CDS 60.0%
TTGTTCAGGGCGCAGCTCGT+CGG + chr2_2:65530696-65530715 Msa0265290:intron 60.0%
GTGGAGGAGGAGGATGAGGA+GGG + chr2_2:65530826-65530845 Msa0265290:intron 60.0%
TGGAGGAGGAGGATGAGGAG+GGG + chr2_2:65530827-65530846 Msa0265290:intron 60.0%
GGAGGTGGAGGAGGAGGATG+AGG + chr2_2:65530822-65530841 Msa0265290:intron 65.0%
GGTGGAGGAGGAGGATGAGG+AGG + chr2_2:65530825-65530844 Msa0265290:intron 65.0%
GGAGGAGGAGGATGAGGAGG+GGG + chr2_2:65530828-65530847 Msa0265290:intron 65.0%
TCAGGGCGCAGCTCGTCGGT+TGG + chr2_2:65530700-65530719 Msa0265290:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 65528410 65531861 65528410 ID=Msa0265290;Name=Msa0265290
chr2_2 mRNA 65528410 65531861 65528410 ID=Msa0265290-mRNA-1;Parent=Msa0265290;Name=Msa0265290-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.87|0.77|1|1|1|9|393|423
chr2_2 exon 65528410 65528879 65528410 ID=Msa0265290-mRNA-1:exon:20598;Parent=Msa0265290-mRNA-1
chr2_2 exon 65529003 65529097 65529003 ID=Msa0265290-mRNA-1:exon:20599;Parent=Msa0265290-mRNA-1
chr2_2 exon 65529239 65529281 65529239 ID=Msa0265290-mRNA-1:exon:20600;Parent=Msa0265290-mRNA-1
chr2_2 exon 65529932 65530009 65529932 ID=Msa0265290-mRNA-1:exon:20601;Parent=Msa0265290-mRNA-1
chr2_2 exon 65530091 65530244 65530091 ID=Msa0265290-mRNA-1:exon:20602;Parent=Msa0265290-mRNA-1
chr2_2 exon 65530432 65530584 65530432 ID=Msa0265290-mRNA-1:exon:20603;Parent=Msa0265290-mRNA-1
chr2_2 exon 65530704 65530814 65530704 ID=Msa0265290-mRNA-1:exon:20604;Parent=Msa0265290-mRNA-1
chr2_2 exon 65531144 65531212 65531144 ID=Msa0265290-mRNA-1:exon:20605;Parent=Msa0265290-mRNA-1
chr2_2 exon 65531370 65531861 65531370 ID=Msa0265290-mRNA-1:exon:20606;Parent=Msa0265290-mRNA-1
chr2_2 CDS 65528410 65528879 65528410 ID=Msa0265290-mRNA-1:cds;Parent=Msa0265290-mRNA-1
chr2_2 CDS 65529003 65529097 65529003 ID=Msa0265290-mRNA-1:cds;Parent=Msa0265290-mRNA-1
chr2_2 CDS 65529239 65529281 65529239 ID=Msa0265290-mRNA-1:cds;Parent=Msa0265290-mRNA-1
chr2_2 CDS 65529932 65530009 65529932 ID=Msa0265290-mRNA-1:cds;Parent=Msa0265290-mRNA-1
chr2_2 CDS 65530091 65530244 65530091 ID=Msa0265290-mRNA-1:cds;Parent=Msa0265290-mRNA-1
chr2_2 CDS 65530432 65530584 65530432 ID=Msa0265290-mRNA-1:cds;Parent=Msa0265290-mRNA-1
chr2_2 CDS 65530704 65530814 65530704 ID=Msa0265290-mRNA-1:cds;Parent=Msa0265290-mRNA-1
chr2_2 CDS 65531144 65531212 65531144 ID=Msa0265290-mRNA-1:cds;Parent=Msa0265290-mRNA-1
chr2_2 CDS 65531370 65531468 65531370 ID=Msa0265290-mRNA-1:cds;Parent=Msa0265290-mRNA-1
chr2_2 three_prime_UTR 65531469 65531861 65531469 ID=Msa0265290-mRNA-1:three_prime_utr;Parent=Msa0265290-mRNA-1
Gene Sequence

>Msa0265290

TTTCATTCCACGTACACCGTTAGAACCGGTCTATCTATCATCTCATCTCATCTCATCTCATCTATCCAATTTCAATTTTCTTTCTTCATTTTCAGCGCTTTACACCTTTTTCCCCTTTCTTCATTTCTAGGGTTTTTCTTTTCAAATTTCAATTCAATTTCAATTTCGCACAATCTTCAATTTCAATCGCAGCGACGTCGTTTCAAGATGATGCCCCCGGGCCTCGTTTCCAATCTTCAAGAAGCACTTCTCAACAGAAAAATCACACCTTCACAACAAGATGAATCAAACGACACCGTTTCTTCCACCAACGATGATAACCCTAATCCTAACCCTATCGAATTCGATGAATCCAAACCCATTATCTTGCTCACAAACAGCGATGGAGTTGAATCACCAGGTCTTACACACCTAGTTGAAGCTCTCGTTCTTCAAAACCTTTACAATGTCCATGTTTGCGTTCCTCAATCGGATAAATCTGTTTCTGGTCATTCTGTTACGATTCGAGAAACCGTGGAAGCTTGTTCTGCTCAAGTTAATGGTGCCACTGCTTTTGAGATTTCAGGGACTCCTGCGGATTGTGTTTCATTGGCTTTATCTGGAGCTTTGTTCTACTCTGGGGTTGTTGCTGGAGCTAGGGAGGCATTATTATGCGGTGTACCATCATTATCAATATCATTAAACTGGAAAAAGGATGAAAGTCAAGAAACTGATTTCAAGGATGCAGTTGAAGTCTGTTTACCGTTGATAAATGCAGCTATCAGGGATGCTGAAAAGGAAACATTTCCCAAAAATTGCTTTCTGAATATTGAAATTCCGAGATCACCTTTGAGCAACAAGGGCTTCAAATTGACTAAGCAAAGTATGTGGAGATCCACTCCAAACTGGTTAGCTGTTTCAAATAGCCGCTATCCAACTGGTCATTTCTTGGCCAATCCACAAGGTGGCCTTGGTCTTCAGTTTGCACAGCTTGGCCGAGATGCCTCTGCAGCTGGCGCAGCTCGTCGGTTGGCTACGCAGAAAAAGAATTTGGAGATTATTGAATCAACTGGAGCTGCAGGAAAACCTGATACCAATAAAGTGAAGAAATACTTCAGACTAGAGTTTTTGGACAAGCAGCAGGAAGAAATAGATGACGATGATCTGGATTACAGAGCACTTGAAAGTGGATATGTTGCAGTGACTCCGGTATCTCTTTCTCCTCATATTGAGAGTGATATTCAAACGTCAACTTCTGATTGGATTTCTGCTGTGATTCCTGGTGGACAGTAA

Protein sequence

>Msa0265290

FHSTYTVRTGLSIISSHLISSIQFQFSFFIFSALHLFPLSSFLGFFFSNFNSISISHNLQFQSQRRRFKMMPPGLVSNLQEALLNRKITPSQQDESNDTVSSTNDDNPNPNPIEFDESKPIILLTNSDGVESPGLTHLVEALVLQNLYNVHVCVPQSDKSVSGHSVTIRETVEACSAQVNGATAFEISGTPADCVSLALSGALFYSGVVAGAREALLCGVPSLSISLNWKKDESQETDFKDAVEVCLPLINAAIRDAEKETFPKNCFLNIEIPRSPLSNKGFKLTKQSMWRSTPNWLAVSNSRYPTGHFLANPQGGLGLQFAQLGRDASAAGAARRLATQKKNLEIIESTGAAGKPDTNKVKKYFRLEFLDKQQEEIDDDDLDYRALESGYVAVTPVSLSPHIESDIQTSTSDWISAVIPGGQ*