AlfalfaGEDB | Msa1377660

M. sativa cultivar zhongmu-4 / Msa1377660

KEGG: K03787
GO: -
PFAM: PF01975.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377660	XP_003597571.1	91.777	377	8	1	1	354	1	377	0.0	701

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377660	sp\|A6H213\|SURE_FLAPJ	30.435	230	116	9	49	246	2	219	9.24e-20	90.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377660	G7IS42	91.777	377	8	1	1	354	1	377	0.0	701

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1377660	-0.816757	4.691860e-52	-8.615850e-47
Msa0095380	Msa1377660	0.806068	9.844989e-50	-8.615850e-47
Msa0183590	Msa1377660	0.801177	1.018409e-48	-8.615850e-47
Msa0194970	Msa1377660	0.803512	3.364811e-49	-8.615850e-47
Msa0224150	Msa1377660	0.939115	2.182914e-99	-8.615850e-47
Msa0265290	Msa1377660	0.985986	2.647477e-165	-8.615850e-47
Msa0369570	Msa1377660	0.815438	9.244929e-52	-8.615850e-47
Msa0469910	Msa1377660	-0.817609	3.017265e-52	-8.615850e-47
Msa0527590	Msa1377660	0.803200	3.904164e-49	-8.615850e-47
Msa0669850	Msa1377660	0.813779	2.153551e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377660	MtrunA17_Chr2g0330031	91.777	377	8	1	1	354	1	377	0.0	701
Msa1377660	MtrunA17_Chr1g0205501	32.219	329	165	5	45	349	3	297	8.85e-55	182
Msa1377660	MtrunA17_Chr5g0394431	32.229	332	162	7	45	349	3	298	2.08e-53	178

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377660	AT1G72880.2	57.480	381	131	7	2	354	8	385	1.01e-143	412
Msa1377660	AT1G72880.1	57.480	381	131	7	2	354	8	385	1.01e-143	412
Msa1377660	AT4G14930.1	32.407	324	164	6	50	349	13	305	1.01e-49	169
Msa1377660	AT4G14930.2	41.951	205	95	2	50	230	13	217	1.69e-48	166

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Find 110 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAGAAATGAAGAA+AGG	0.500295	tig0019964:-16374	Msa1377660:intergenic
AAAAGCTTCTTGTAATTTCT+TGG	0.239883	tig0019964:+19542	Msa1377660:three_prime_UTR
AAACCCTAGAAATGAAGAAA+GGG	0.471301	tig0019964:-16373	Msa1377660:intergenic
AAAGCTTCTTGTAATTTCTT+GGG	0.388567	tig0019964:+19543	Msa1377660:three_prime_UTR
AAATGCTCCAGGTTCTACTC+TGG	0.471886	tig0019964:+17772	Msa1377660:intron
AACAGCTAACCAGTTTGGAG+TGG	0.612572	tig0019964:-18317	Msa1377660:intergenic
AACCCTAGAAATGAAGAAAG+GGG	0.628453	tig0019964:-16372	Msa1377660:intergenic
AAGATTGGAAACGAGGCCCG+GGG	0.581766	tig0019964:-16475	Msa1377660:intergenic
AAGCAAAGATGGAGCAGAAG+TGG	0.533404	tig0019964:+19398	Msa1377660:three_prime_UTR
AAGTCAAGAAACTGATTTCA+AGG	0.442158	tig0019964:+17954	Msa1377660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCCTAGAAATGAAGAAA+GGG	-	tig0019964:16376-16395	Msa1377660:intergenic	30.0%
AAAACCCTAGAAATGAAGAA+AGG	-	tig0019964:16377-16396	Msa1377660:intergenic	30.0%
TTTAGGGATAAATCTGTTTC+TGG	+	tig0019964:16849-16868	Msa1377660:intron	30.0%
CCGTAAATTAATTGTGTGTT+TGG	+	tig0019964:17180-17199	Msa1377660:intron	30.0%
TCTAACTTGAAGCTAGAATT+TGG	-	tig0019964:17369-17388	Msa1377660:intergenic	30.0%
CATGATGTGATTTGAATTTC+AGG	+	tig0019964:17523-17542	Msa1377660:intron	30.0%
AGGTTATTAGTGGGATTAAT+CGG	+	tig0019964:17543-17562	Msa1377660:intron	30.0%
ACATGTAAGTTGCTAACTTA+TGG	+	tig0019964:17585-17604	Msa1377660:intron	30.0%
TAAGTTGCTAACTTATGGTT+AGG	+	tig0019964:17590-17609	Msa1377660:intron	30.0%
AAGTTGCTAACTTATGGTTA+GGG	+	tig0019964:17591-17610	Msa1377660:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019964	gene	16260	19712	16260	ID=Msa1377660;Name=Msa1377660
tig0019964	mRNA	16260	19712	16260	ID=Msa1377660-mRNA-1;Parent=Msa1377660;Name=Msa1377660-mRNA-1;_AED=0.11;_eAED=0.11;_QI=208\|0.87\|0.88\|1\|1\|1\|9\|393\|354
tig0019964	exon	16260	16730	16260	ID=Msa1377660-mRNA-1:exon:5732;Parent=Msa1377660-mRNA-1
tig0019964	exon	16854	16948	16854	ID=Msa1377660-mRNA-1:exon:5733;Parent=Msa1377660-mRNA-1
tig0019964	exon	17090	17132	17090	ID=Msa1377660-mRNA-1:exon:5734;Parent=Msa1377660-mRNA-1
tig0019964	exon	17783	17860	17783	ID=Msa1377660-mRNA-1:exon:5735;Parent=Msa1377660-mRNA-1
tig0019964	exon	17942	18095	17942	ID=Msa1377660-mRNA-1:exon:5736;Parent=Msa1377660-mRNA-1
tig0019964	exon	18283	18435	18283	ID=Msa1377660-mRNA-1:exon:5737;Parent=Msa1377660-mRNA-1
tig0019964	exon	18555	18665	18555	ID=Msa1377660-mRNA-1:exon:5738;Parent=Msa1377660-mRNA-1
tig0019964	exon	18995	19063	18995	ID=Msa1377660-mRNA-1:exon:5739;Parent=Msa1377660-mRNA-1
tig0019964	exon	19221	19712	19221	ID=Msa1377660-mRNA-1:exon:5740;Parent=Msa1377660-mRNA-1
tig0019964	five_prime_UTR	16260	16467	16260	ID=Msa1377660-mRNA-1:five_prime_utr;Parent=Msa1377660-mRNA-1
tig0019964	CDS	16468	16730	16468	ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1
tig0019964	CDS	16854	16948	16854	ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1
tig0019964	CDS	17090	17132	17090	ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1
tig0019964	CDS	17783	17860	17783	ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1
tig0019964	CDS	17942	18095	17942	ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1
tig0019964	CDS	18283	18435	18283	ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1
tig0019964	CDS	18555	18665	18555	ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1
tig0019964	CDS	18995	19063	18995	ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1
tig0019964	CDS	19221	19319	19221	ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1
tig0019964	three_prime_UTR	19320	19712	19320	ID=Msa1377660-mRNA-1:three_prime_utr;Parent=Msa1377660-mRNA-1

Gene Sequence

>Msa1377660

ATGATGCCCCCGGGCCTCGTTTCCAATCTTCAAGAAGCACTTCTCAACAGAAAAATCACACCTTCACAACAAGATGAATCAAACGACACCGTTTCTTCCACCAACGATGATAACCCTAATCCTAACCCTATCGAATTCGATGAATCCAAACCCATTATCTTGCTCACAAACAGCGATGGAGTTGAATCACCAGGTCTTACACACCTAGTTGAAGCTCTCGTTCTTCAAAACCTTTACAATGTCCATGTTTGCGTTCCTCAATCGGATAAATCTGTTTCTGGTCATTCTGTTACGATTCGAGAAACCGTGGAAGCTTGTTCTGCTCAAGTTAATGGTGCCACTGCTTTTGAGATTTCAGGGACTCCTGCGGATTGTGTTTCATTGGCTTTATCTGGAGCTTTGTTCTACTCTGGGGTTGTTGCTGGAGCTAGGGAGGCATTATTATGCGGTGTACCATCATTATCAATATCATTAAACTGGAAAAAGGATGAAAGTCAAGAAACTGATTTCAAGGATGCAGTTGAAGTCTGTTTACCGTTGATAAATGCAGCTATCAGGGATGCTGAAAAGGAAACATTTCCCAAAAATTGCTTTCTGAATATTGAAATTCCGAGATCACCTTTGAGCAACAAGGGCTTCAAATTGACTAAGCAAAGTATGTGGAGATCCACTCCAAACTGGTTAGCTGTTTCAAATAGCCGCTATCCAACTGGTCATTTCTTGGCCAATCCACAAGGTGGCCTTGGTCTTCAGTTTGCACAGCTTGGCCGAGATGCCTCTGCAGCTGGCGCAGCTCGTCGGTTGGCTACGCAGAAAAAGAATTTGGAGATTATTGAATCAACTGGAGCTGCAGGAAAACCTGATACCAATAAAGTGAAGAAATACTTCAGACTAGAGTTTTTGGACAAGCAGCAGGAAGAAATAGATGACGATGATCTGGATTACAGAGCACTTGAAAGTGGATATGTTGCAGTGACTCCGGTATCTCTTTCTCCTCATATTGAGAGTGATATTCAAACGTCAACTTCTGATTGGATTTCTGCTGTGATTCCTGGTGGACAGTAA

Protein sequence

>Msa1377660

MMPPGLVSNLQEALLNRKITPSQQDESNDTVSSTNDDNPNPNPIEFDESKPIILLTNSDGVESPGLTHLVEALVLQNLYNVHVCVPQSDKSVSGHSVTIRETVEACSAQVNGATAFEISGTPADCVSLALSGALFYSGVVAGAREALLCGVPSLSISLNWKKDESQETDFKDAVEVCLPLINAAIRDAEKETFPKNCFLNIEIPRSPLSNKGFKLTKQSMWRSTPNWLAVSNSRYPTGHFLANPQGGLGLQFAQLGRDASAAGAARRLATQKKNLEIIESTGAAGKPDTNKVKKYFRLEFLDKQQEEIDDDDLDYRALESGYVAVTPVSLSPHIESDIQTSTSDWISAVIPGGQ*