Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377660 | XP_003597571.1 | 91.777 | 377 | 8 | 1 | 1 | 354 | 1 | 377 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377660 | sp|A6H213|SURE_FLAPJ | 30.435 | 230 | 116 | 9 | 49 | 246 | 2 | 219 | 9.24e-20 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377660 | G7IS42 | 91.777 | 377 | 8 | 1 | 1 | 354 | 1 | 377 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1377660 | -0.816757 | 4.691860e-52 | -8.615850e-47 |
| Msa0095380 | Msa1377660 | 0.806068 | 9.844989e-50 | -8.615850e-47 |
| Msa1362510 | Msa1377660 | 0.823558 | 1.298493e-53 | -8.615850e-47 |
| Msa1364060 | Msa1377660 | 0.885863 | 5.632989e-72 | -8.615850e-47 |
| Msa1377660 | Msa1382410 | 0.803497 | 3.389140e-49 | -8.615850e-47 |
| Msa1377660 | Msa1416390 | 0.801882 | 7.299171e-49 | -8.615850e-47 |
| Msa0669850 | Msa1377660 | 0.813779 | 2.153551e-51 | -8.615850e-47 |
| Msa0715010 | Msa1377660 | -0.805515 | 1.286373e-49 | -8.615850e-47 |
| Msa0792090 | Msa1377660 | 0.802399 | 5.715498e-49 | -8.615850e-47 |
| Msa0183590 | Msa1377660 | 0.801177 | 1.018409e-48 | -8.615850e-47 |
| Msa0194970 | Msa1377660 | 0.803512 | 3.364811e-49 | -8.615850e-47 |
| Msa0224150 | Msa1377660 | 0.939115 | 2.182914e-99 | -8.615850e-47 |
| Msa1267260 | Msa1377660 | 0.804539 | 2.058333e-49 | -8.615850e-47 |
| Msa0369570 | Msa1377660 | 0.815438 | 9.244929e-52 | -8.615850e-47 |
| Msa0469910 | Msa1377660 | -0.817609 | 3.017265e-52 | -8.615850e-47 |
| Msa0993530 | Msa1377660 | 0.807231 | 5.591193e-50 | -8.615850e-47 |
| Msa0265290 | Msa1377660 | 0.985986 | 2.647477e-165 | -8.615850e-47 |
| Msa1130210 | Msa1377660 | -0.815569 | 8.644709e-52 | -8.615850e-47 |
| Msa1185540 | Msa1377660 | 0.803282 | 3.755901e-49 | -8.615850e-47 |
| Msa0527590 | Msa1377660 | 0.803200 | 3.904164e-49 | -8.615850e-47 |
| Msa0855430 | Msa1377660 | 0.801124 | 1.044096e-48 | -8.615850e-47 |
| Msa0881020 | Msa1377660 | 0.817278 | 3.582747e-52 | -8.615850e-47 |
| Msa0881030 | Msa1377660 | 0.820905 | 5.356885e-53 | -8.615850e-47 |
| Msa0893810 | Msa1377660 | 0.807533 | 4.824918e-50 | -8.615850e-47 |
| Msa0959010 | Msa1377660 | 0.813476 | 2.511208e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377660 | MtrunA17_Chr2g0330031 | 91.777 | 377 | 8 | 1 | 1 | 354 | 1 | 377 | 0.0 | 701 |
| Msa1377660 | MtrunA17_Chr1g0205501 | 32.219 | 329 | 165 | 5 | 45 | 349 | 3 | 297 | 8.85e-55 | 182 |
| Msa1377660 | MtrunA17_Chr5g0394431 | 32.229 | 332 | 162 | 7 | 45 | 349 | 3 | 298 | 2.08e-53 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377660 | AT1G72880.2 | 57.480 | 381 | 131 | 7 | 2 | 354 | 8 | 385 | 1.01e-143 | 412 |
| Msa1377660 | AT1G72880.1 | 57.480 | 381 | 131 | 7 | 2 | 354 | 8 | 385 | 1.01e-143 | 412 |
| Msa1377660 | AT4G14930.1 | 32.407 | 324 | 164 | 6 | 50 | 349 | 13 | 305 | 1.01e-49 | 169 |
| Msa1377660 | AT4G14930.2 | 41.951 | 205 | 95 | 2 | 50 | 230 | 13 | 217 | 1.69e-48 | 166 |
Find 110 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCTCCATCTTTGCTTTA+AGG | 0.101982 | tig0019964:-19393 | Msa1377660:intergenic |
| TTTCCCCTTTCTTCATTTCT+AGG | 0.132640 | tig0019964:+16369 | Msa1377660:five_prime_UTR |
| TTTAGGGATAAATCTGTTTC+TGG | 0.178353 | tig0019964:+16849 | Msa1377660:intron |
| GAAGTATTTCTTCACTTTAT+TGG | 0.213458 | tig0019964:-18634 | Msa1377660:intergenic |
| TTCTACTCTGGGGTTGTTGC+TGG | 0.231757 | tig0019964:+17784 | Msa1377660:CDS |
| TGTGTTTCATTGGCTTTATC+TGG | 0.234130 | tig0019964:+17104 | Msa1377660:CDS |
| AAAAGCTTCTTGTAATTTCT+TGG | 0.239883 | tig0019964:+19542 | Msa1377660:three_prime_UTR |
| GCTTGTTCTGCTCAAGTTAA+TGG | 0.246805 | tig0019964:+16903 | Msa1377660:CDS |
| TGGATTTCTGCTGTGATTCC+TGG | 0.252539 | tig0019964:+19287 | Msa1377660:CDS |
| AATTCGATAGGGTTAGGATT+AGG | 0.265411 | tig0019964:-16582 | Msa1377660:intergenic |
| CTTCATTGTTTCAGTTCCTT+TGG | 0.272424 | tig0019964:+19492 | Msa1377660:three_prime_UTR |
| CGTTGATAAATGCAGCTATC+AGG | 0.280646 | tig0019964:+17998 | Msa1377660:CDS |
| TGAAGAAAGAAAATTGAAAT+TGG | 0.282214 | tig0019964:-16326 | Msa1377660:intergenic |
| TTTATTGAAATGTGCTCTAA+TGG | 0.283892 | tig0019964:+19682 | Msa1377660:three_prime_UTR |
| TTCTTCACTTTATTGGTATC+AGG | 0.291732 | tig0019964:-18627 | Msa1377660:intergenic |
| TATATCATGTTATAGGAAAA+AGG | 0.296377 | tig0019964:+17927 | Msa1377660:intron |
| ATTCGATAGGGTTAGGATTA+GGG | 0.300748 | tig0019964:-16581 | Msa1377660:intergenic |
| CTATCCAACTGGTCATTTCT+TGG | 0.301621 | tig0019964:+18351 | Msa1377660:CDS |
| CAATCCAAAGTTTAACTATC+TGG | 0.306685 | tig0019964:-19655 | Msa1377660:intergenic |
| GCCAATCCACAAGGTGGCCT+TGG | 0.331528 | tig0019964:+18373 | Msa1377660:CDS |
| TCCTGCGGATTGTGTTTCAT+TGG | 0.339731 | tig0019964:+17094 | Msa1377660:CDS |
| GAAATGAAGAAAGGGGAAAA+AGG | 0.341908 | tig0019964:-16365 | Msa1377660:intergenic |
| TTTGAAACAGCTAACCAGTT+TGG | 0.357202 | tig0019964:-18322 | Msa1377660:intergenic |
| TTGGAGATTATTGAATCAAC+TGG | 0.357915 | tig0019964:+18591 | Msa1377660:CDS |
| GCTGTTTGTGAGCAAGATAA+TGG | 0.364803 | tig0019964:-16619 | Msa1377660:intergenic |
| TTTCTTCCTTAAAGCAAAGA+TGG | 0.380472 | tig0019964:+19387 | Msa1377660:three_prime_UTR |
| TTCAAACGTCAACTTCTGAT+TGG | 0.384107 | tig0019964:+19267 | Msa1377660:CDS |
| CATTATCAATATCATTAAAC+TGG | 0.385947 | tig0019964:+17839 | Msa1377660:CDS |
| TCATCGAATTCGATAGGGTT+AGG | 0.387109 | tig0019964:-16588 | Msa1377660:intergenic |
| ATTGAAATCAGCTATTGAAT+TGG | 0.387679 | tig0019964:-19433 | Msa1377660:intergenic |
| AAAGCTTCTTGTAATTTCTT+GGG | 0.388567 | tig0019964:+19543 | Msa1377660:three_prime_UTR |
| TTCCCCTTTCTTCATTTCTA+GGG | 0.392444 | tig0019964:+16370 | Msa1377660:five_prime_UTR |
| GAGAAGTGCTTCTTGAAGAT+TGG | 0.399004 | tig0019964:-16490 | Msa1377660:intergenic |
| CTGGGGTTGTTGCTGGAGCT+AGG | 0.415674 | tig0019964:+17791 | Msa1377660:CDS |
| TGGGGTTGTTGCTGGAGCTA+GGG | 0.421199 | tig0019964:+17792 | Msa1377660:CDS |
| CTGTTTGTGAGCAAGATAAT+GGG | 0.422044 | tig0019964:-16618 | Msa1377660:intergenic |
| GGTCTTCAGTTTGCACAGCT+TGG | 0.423296 | tig0019964:+18394 | Msa1377660:CDS |
| TGAAGATTGGAAACGAGGCC+CGG | 0.439122 | tig0019964:-16477 | Msa1377660:intergenic |
| TCTTCCAGATAGTTAAACTT+TGG | 0.439867 | tig0019964:+19651 | Msa1377660:three_prime_UTR |
| TGTGAGCAAGATAATGGGTT+TGG | 0.440916 | tig0019964:-16613 | Msa1377660:intergenic |
| AAGTCAAGAAACTGATTTCA+AGG | 0.442158 | tig0019964:+17954 | Msa1377660:CDS |
| AGAAATAGATGACGATGATC+TGG | 0.446591 | tig0019964:+19015 | Msa1377660:CDS |
| GAAGATTGGAAACGAGGCCC+GGG | 0.453439 | tig0019964:-16476 | Msa1377660:intergenic |
| TTTAATGATATTGATAATGA+TGG | 0.457599 | tig0019964:-17835 | Msa1377660:intergenic |
| ATTGAATCAACTGGAGCTGC+AGG | 0.468057 | tig0019964:+18600 | Msa1377660:CDS |
| GATATTACAAACAGACCAAA+TGG | 0.470062 | tig0019964:-19583 | Msa1377660:intergenic |
| AATGCTCCAGGTTCTACTCT+GGG | 0.470332 | tig0019964:+17773 | Msa1377660:intron |
| AAACCCTAGAAATGAAGAAA+GGG | 0.471301 | tig0019964:-16373 | Msa1377660:intergenic |
| AAATGCTCCAGGTTCTACTC+TGG | 0.471886 | tig0019964:+17772 | Msa1377660:intron |
| AGCTATCAGGGATGCTGAAA+AGG | 0.478095 | tig0019964:+18011 | Msa1377660:CDS |
| TGTGGAGATCCACTCCAAAC+TGG | 0.479831 | tig0019964:+18308 | Msa1377660:CDS |
| TCAAATAGCCGCTATCCAAC+TGG | 0.485041 | tig0019964:+18340 | Msa1377660:CDS |
| TCCACGTACACCGTTAGAAC+CGG | 0.490654 | tig0019964:+16267 | Msa1377660:five_prime_UTR |
| ACCAAGGCCACCTTGTGGAT+TGG | 0.492533 | tig0019964:-18374 | Msa1377660:intergenic |
| TCGTTTCAAGATGATGCCCC+CGG | 0.496104 | tig0019964:+16458 | Msa1377660:exon |
| AGGATTAGGGTTATCATCGT+TGG | 0.497932 | tig0019964:-16568 | Msa1377660:intergenic |
| TTGTTCAGGGCGCAGCTCGT+CGG | 0.499499 | tig0019964:+18547 | Msa1377660:intron |
| AAAACCCTAGAAATGAAGAA+AGG | 0.500295 | tig0019964:-16374 | Msa1377660:intergenic |
| CGCAAACATGGACATTGTAA+AGG | 0.507879 | tig0019964:-16698 | Msa1377660:intergenic |
| TTGGATTCATCGAATTCGAT+AGG | 0.510175 | tig0019964:-16594 | Msa1377660:intergenic |
| TGAATATCACTCTCAATATG+AGG | 0.515335 | tig0019964:-19248 | Msa1377660:intergenic |
| ATCATCGTTGGTGGAAGAAA+CGG | 0.515938 | tig0019964:-16556 | Msa1377660:intergenic |
| TTGTTGCTCAAAGGTGATCT+CGG | 0.524280 | tig0019964:-18072 | Msa1377660:intergenic |
| TTTGATTCATCTTGTTGTGA+AGG | 0.524748 | tig0019964:-16528 | Msa1377660:intergenic |
| ATTAGGGTTATCATCGTTGG+TGG | 0.527462 | tig0019964:-16565 | Msa1377660:intergenic |
| AGGAACTGAAACAATGAAGA+AGG | 0.531500 | tig0019964:-19488 | Msa1377660:intergenic |
| AAGCAAAGATGGAGCAGAAG+TGG | 0.533404 | tig0019964:+19398 | Msa1377660:three_prime_UTR |
| TTACAGACCTTGTTGCTCAA+AGG | 0.534339 | tig0019964:-18081 | Msa1377660:intergenic |
| GGTTGTTGCTGGAGCTAGGG+AGG | 0.535432 | tig0019964:+17795 | Msa1377660:CDS |
| GTTGATAAATGCAGCTATCA+GGG | 0.535579 | tig0019964:+17999 | Msa1377660:CDS |
| TTGAGCAGAACAAGCTTCCA+CGG | 0.545035 | tig0019964:-16895 | Msa1377660:intergenic |
| TCAGGGCGCAGCTCGTCGGT+TGG | 0.546235 | tig0019964:+18551 | Msa1377660:intron |
| AGATGAGATGATAGATAGAC+CGG | 0.547804 | tig0019964:-16286 | Msa1377660:intergenic |
| GAAGAACGAGAGCTTCAACT+AGG | 0.548339 | tig0019964:-16671 | Msa1377660:intergenic |
| ATATGAGGAGAAAGAGATAC+CGG | 0.550193 | tig0019964:-19233 | Msa1377660:intergenic |
| TGGATTCATCGAATTCGATA+GGG | 0.554963 | tig0019964:-16593 | Msa1377660:intergenic |
| GATTACAGAGCACTTGAAAG+TGG | 0.567031 | tig0019964:+19037 | Msa1377660:CDS |
| ATTTCTGCTGTGATTCCTGG+TGG | 0.569344 | tig0019964:+19290 | Msa1377660:CDS |
| GCCAATGAAACACAATCCGC+AGG | 0.578293 | tig0019964:-17095 | Msa1377660:intergenic |
| GATAGATAGACCGGTTCTAA+CGG | 0.581569 | tig0019964:-16277 | Msa1377660:intergenic |
| AAGATTGGAAACGAGGCCCG+GGG | 0.581766 | tig0019964:-16475 | Msa1377660:intergenic |
| CATTTCTTGGCCAATCCACA+AGG | 0.583050 | tig0019964:+18364 | Msa1377660:CDS |
| AATTGACTAAGCAAAGTATG+TGG | 0.583954 | tig0019964:+18290 | Msa1377660:CDS |
| GAAACAGGTTGCAGTGACTC+CGG | 0.585349 | tig0019964:+19214 | Msa1377660:intron |
| CAAATCAAGAAATAACTAAG+TGG | 0.588283 | tig0019964:-19515 | Msa1377660:intergenic |
| ACGATTGAGGAACGCAAACA+TGG | 0.602918 | tig0019964:-16710 | Msa1377660:intergenic |
| ACCGGTTCTAACGGTGTACG+TGG | 0.602932 | tig0019964:-16268 | Msa1377660:intergenic |
| CTTCTTGAAGATTGGAAACG+AGG | 0.607887 | tig0019964:-16482 | Msa1377660:intergenic |
| AGAAATAACTAAGTGGCCAA+AGG | 0.608629 | tig0019964:-19508 | Msa1377660:intergenic |
| CTGATAGCTGCATTTATCAA+CGG | 0.609132 | tig0019964:-17997 | Msa1377660:intergenic |
| ACCTGAAATCTCAAAAGCAG+TGG | 0.609300 | tig0019964:-16928 | Msa1377660:intergenic |
| AACAGCTAACCAGTTTGGAG+TGG | 0.612572 | tig0019964:-18317 | Msa1377660:intergenic |
| ATCTTGCTCACAAACAGCGA+TGG | 0.615557 | tig0019964:+16624 | Msa1377660:CDS |
| TTGGCCAAGAAATGACCAGT+TGG | 0.621148 | tig0019964:-18355 | Msa1377660:intergenic |
| TAGGATACTTACAGCTGCAG+AGG | 0.621441 | tig0019964:-18425 | Msa1377660:intergenic |
| AACCCTAGAAATGAAGAAAG+GGG | 0.628453 | tig0019964:-16372 | Msa1377660:intergenic |
| TTACAGCTGCAGAGGCATCT+CGG | 0.632794 | tig0019964:-18417 | Msa1377660:intergenic |
| GAGATCACCTTTGAGCAACA+AGG | 0.634652 | tig0019964:+18074 | Msa1377660:CDS |
| AGCGATGGAGTTGAATCACC+AGG | 0.636526 | tig0019964:+16639 | Msa1377660:CDS |
| TAATAATTCAGGGACTCCTG+CGG | 0.636885 | tig0019964:+17079 | Msa1377660:intron |
| TCAACTAGGTGTGTAAGACC+TGG | 0.638164 | tig0019964:-16657 | Msa1377660:intergenic |
| AGAAATGACCAGTTGGATAG+CGG | 0.646911 | tig0019964:-18348 | Msa1377660:intergenic |
| GAAGAAATACTTCAGACTAG+AGG | 0.658962 | tig0019964:+18644 | Msa1377660:CDS |
| ATGCTCCAGGTTCTACTCTG+GGG | 0.670311 | tig0019964:+17774 | Msa1377660:intron |
| TTCTTGGCCAATCCACAAGG+TGG | 0.682503 | tig0019964:+18367 | Msa1377660:CDS |
| TGTTACGATTCGAGAAACCG+TGG | 0.686133 | tig0019964:+16878 | Msa1377660:CDS |
| TGAAGACCAAGGCCACCTTG+TGG | 0.695105 | tig0019964:-18379 | Msa1377660:intergenic |
| GCTAGGGAGGCATTATTATG+CGG | 0.703521 | tig0019964:+17808 | Msa1377660:CDS |
| GCTGTGCAAACTGAAGACCA+AGG | 0.760862 | tig0019964:-18390 | Msa1377650:intergenic |
| AGATTGGAAACGAGGCCCGG+GGG | 0.763136 | tig0019964:-16474 | Msa1377650:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTTTGATTTTTTTGT+TGG | + | tig0019964:16770-16789 | Msa1377660:intron | 10.0% |
| !!! | TAAATCAAATTTTTGTTTTT+TGG | + | tig0019964:16975-16994 | Msa1377660:intron | 10.0% |
| !!! | AAATCAAATTTTTGTTTTTT+GGG | + | tig0019964:16976-16995 | Msa1377660:intron | 10.0% |
| !! | TTAGTAATTTATAATAATTC+AGG | + | tig0019964:17068-17087 | Msa1377660:intron | 10.0% |
| !! | TAGTAATTTATAATAATTCA+GGG | + | tig0019964:17069-17088 | Msa1377660:intron | 10.0% |
| !!! | AATCAAATTTTTGTTTTTTG+GGG | + | tig0019964:16977-16996 | Msa1377660:intron | 15.0% |
| !!! | TTTAATGATATTGATAATGA+TGG | - | tig0019964:17838-17857 | Msa1377660:intergenic | 15.0% |
| !! | TGAAGAAAGAAAATTGAAAT+TGG | - | tig0019964:16329-16348 | Msa1377660:intergenic | 20.0% |
| !!! | ATCAAATTTTTGTTTTTTGG+GGG | + | tig0019964:16978-16997 | Msa1377660:intron | 20.0% |
| !!! | TGATTATGTAAAATTGATTC+TGG | + | tig0019964:17236-17255 | Msa1377660:intron | 20.0% |
| !!! | TCAAGTTAGAATAATTTTGA+AGG | + | tig0019964:17379-17398 | Msa1377660:intron | 20.0% |
| !! | CATTATCAATATCATTAAAC+TGG | + | tig0019964:17839-17858 | Msa1377660:CDS | 20.0% |
| !! | TTTCATTAGAGATTATGAAT+TGG | + | tig0019964:17899-17918 | Msa1377660:intron | 20.0% |
| !! | TATATCATGTTATAGGAAAA+AGG | + | tig0019964:17927-17946 | Msa1377660:intron | 20.0% |
| !!! | ATATTCAGAAAGCAATTTTT+GGG | - | tig0019964:18045-18064 | Msa1377660:intergenic | 20.0% |
| !!! | AATATTCAGAAAGCAATTTT+TGG | - | tig0019964:18046-18065 | Msa1377660:intergenic | 20.0% |
| !! | GAACAGATTAATAATCTAAA+AGG | - | tig0019964:18878-18897 | Msa1377660:intergenic | 20.0% |
| !! | ATTTTTGTTAGTTGCTGAAA+TGG | + | tig0019964:16820-16839 | Msa1377660:intron | 25.0% |
| ! | TAATAAATGCTAACCAAAAC+AGG | - | tig0019964:17152-17171 | Msa1377660:intergenic | 25.0% |
| ! | CAAACACACAATTAATTTAC+GGG | - | tig0019964:17182-17201 | Msa1377660:intergenic | 25.0% |
| ! | CCAAACACACAATTAATTTA+CGG | - | tig0019964:17183-17202 | Msa1377660:intergenic | 25.0% |
| !!! | CTATACTCTAGAATCAATTT+TGG | + | tig0019964:17448-17467 | Msa1377660:intron | 25.0% |
| !!! | TTTGAATTTCAGGTTATTAG+TGG | + | tig0019964:17533-17552 | Msa1377660:intron | 25.0% |
| !!! | TTGAATTTCAGGTTATTAGT+GGG | + | tig0019964:17534-17553 | Msa1377660:intron | 25.0% |
| !!! | ATAAATCTGAGTTCTGAAAT+TGG | + | tig0019964:17623-17642 | Msa1377660:intron | 25.0% |
| ! | GAATATTACAAGACAGAAAA+TGG | - | tig0019964:17664-17683 | Msa1377660:intergenic | 25.0% |
| ! | AAACACAAATCTCTATAACA+AGG | - | tig0019964:17739-17758 | Msa1377660:intergenic | 25.0% |
| ! | ATATCATTAAACTGGTAAGT+TGG | + | tig0019964:17847-17866 | Msa1377660:intron | 25.0% |
| ! | GGTATCATATATCATGTTAT+AGG | + | tig0019964:17920-17939 | Msa1377660:intron | 25.0% |
| !! | GAAGTATTTCTTCACTTTAT+TGG | - | tig0019964:18637-18656 | Msa1377660:intergenic | 25.0% |
| ! | AACACATAATGTTGTATGAA+GGG | - | tig0019964:18900-18919 | Msa1377660:intergenic | 25.0% |
| ! | TAACACATAATGTTGTATGA+AGG | - | tig0019964:18901-18920 | Msa1377660:intergenic | 25.0% |
| ! | ACTATATTGTATGTTCTTGA+TGG | + | tig0019964:19113-19132 | Msa1377660:intron | 25.0% |
| !! | TCTTGATGGTAATATCTTTA+TGG | + | tig0019964:19127-19146 | Msa1377660:intron | 25.0% |
| !! | CTTGATGGTAATATCTTTAT+GGG | + | tig0019964:19128-19147 | Msa1377660:intron | 25.0% |
| ! | ATTGAAATCAGCTATTGAAT+TGG | - | tig0019964:19436-19455 | Msa1377660:intergenic | 25.0% |
| ! | CAAATCAAGAAATAACTAAG+TGG | - | tig0019964:19518-19537 | Msa1377660:intergenic | 25.0% |
| ! | AAAAGCTTCTTGTAATTTCT+TGG | + | tig0019964:19542-19561 | Msa1377660:three_prime_UTR | 25.0% |
| ! | AAAGCTTCTTGTAATTTCTT+GGG | + | tig0019964:19543-19562 | Msa1377660:three_prime_UTR | 25.0% |
| !!! | TGTTTTAGAAAAATGCCATT+TGG | + | tig0019964:19568-19587 | Msa1377660:three_prime_UTR | 25.0% |
| ! | TTTATTGAAATGTGCTCTAA+TGG | + | tig0019964:19682-19701 | Msa1377660:three_prime_UTR | 25.0% |
| AAACCCTAGAAATGAAGAAA+GGG | - | tig0019964:16376-16395 | Msa1377660:intergenic | 30.0% | |
| AAAACCCTAGAAATGAAGAA+AGG | - | tig0019964:16377-16396 | Msa1377660:intergenic | 30.0% | |
| ! | TTTGATTCATCTTGTTGTGA+AGG | - | tig0019964:16531-16550 | Msa1377660:intergenic | 30.0% |
| TTTAGGGATAAATCTGTTTC+TGG | + | tig0019964:16849-16868 | Msa1377660:intron | 30.0% | |
| CCGTAAATTAATTGTGTGTT+TGG | + | tig0019964:17180-17199 | Msa1377660:intron | 30.0% | |
| TCTAACTTGAAGCTAGAATT+TGG | - | tig0019964:17369-17388 | Msa1377660:intergenic | 30.0% | |
| CATGATGTGATTTGAATTTC+AGG | + | tig0019964:17523-17542 | Msa1377660:intron | 30.0% | |
| AGGTTATTAGTGGGATTAAT+CGG | + | tig0019964:17543-17562 | Msa1377660:intron | 30.0% | |
| ACATGTAAGTTGCTAACTTA+TGG | + | tig0019964:17585-17604 | Msa1377660:intron | 30.0% | |
| TAAGTTGCTAACTTATGGTT+AGG | + | tig0019964:17590-17609 | Msa1377660:intron | 30.0% | |
| AAGTTGCTAACTTATGGTTA+GGG | + | tig0019964:17591-17610 | Msa1377660:intron | 30.0% | |
| TATAACAAGGCTGCAAATTA+TGG | - | tig0019964:17726-17745 | Msa1377660:intergenic | 30.0% | |
| ! | AAGTCAAGAAACTGATTTCA+AGG | + | tig0019964:17954-17973 | Msa1377660:CDS | 30.0% |
| CACAATGCAGTAAAACATAT+GGG | - | tig0019964:18142-18161 | Msa1377660:intergenic | 30.0% | |
| TCTTTCAATTGTACAAACTC+TGG | + | tig0019964:18186-18205 | Msa1377660:intron | 30.0% | |
| AATTGACTAAGCAAAGTATG+TGG | + | tig0019964:18290-18309 | Msa1377660:CDS | 30.0% | |
| CACATGTTTGTATGTAATGT+AGG | - | tig0019964:18447-18466 | Msa1377660:intergenic | 30.0% | |
| ! | TGATGTTTTCTGTCTATTCT+TGG | + | tig0019964:18473-18492 | Msa1377660:intron | 30.0% |
| ! | GATGTTTTCTGTCTATTCTT+GGG | + | tig0019964:18474-18493 | Msa1377660:intron | 30.0% |
| !! | TTGAATCCATGTTTTGTTCA+GGG | + | tig0019964:18534-18553 | Msa1377660:intron | 30.0% |
| TTGGAGATTATTGAATCAAC+TGG | + | tig0019964:18591-18610 | Msa1377660:CDS | 30.0% | |
| TTCTTCACTTTATTGGTATC+AGG | - | tig0019964:18630-18649 | Msa1377660:intergenic | 30.0% | |
| GTACAGAAGATAACAATTTG+TGG | + | tig0019964:18773-18792 | Msa1377660:intron | 30.0% | |
| AGATAACAATTTGTGGAGAA+TGG | + | tig0019964:18780-18799 | Msa1377660:intron | 30.0% | |
| TGAATATCACTCTCAATATG+AGG | - | tig0019964:19251-19270 | Msa1377660:intergenic | 30.0% | |
| !!! | TTTTTAATTTACTGTCCACC+AGG | - | tig0019964:19308-19327 | Msa1377660:intergenic | 30.0% |
| TTTCTTCCTTAAAGCAAAGA+TGG | + | tig0019964:19387-19406 | Msa1377660:three_prime_UTR | 30.0% | |
| GATATTACAAACAGACCAAA+TGG | - | tig0019964:19586-19605 | Msa1377660:intergenic | 30.0% | |
| ATCTATTGCTAGCAAAAAAC+TGG | + | tig0019964:19603-19622 | Msa1377660:three_prime_UTR | 30.0% | |
| TCTTCCAGATAGTTAAACTT+TGG | + | tig0019964:19651-19670 | Msa1377660:three_prime_UTR | 30.0% | |
| CAATCCAAAGTTTAACTATC+TGG | - | tig0019964:19658-19677 | Msa1377660:intergenic | 30.0% | |
| AGATGAGATGATAGATAGAC+CGG | - | tig0019964:16289-16308 | Msa1377660:intergenic | 35.0% | |
| GAAATGAAGAAAGGGGAAAA+AGG | - | tig0019964:16368-16387 | Msa1377660:intergenic | 35.0% | |
| TTTCCCCTTTCTTCATTTCT+AGG | + | tig0019964:16369-16388 | Msa1377660:five_prime_UTR | 35.0% | |
| TTCCCCTTTCTTCATTTCTA+GGG | + | tig0019964:16370-16389 | Msa1377660:five_prime_UTR | 35.0% | |
| AACCCTAGAAATGAAGAAAG+GGG | - | tig0019964:16375-16394 | Msa1377660:intergenic | 35.0% | |
| ATTCGATAGGGTTAGGATTA+GGG | - | tig0019964:16584-16603 | Msa1377660:intergenic | 35.0% | |
| AATTCGATAGGGTTAGGATT+AGG | - | tig0019964:16585-16604 | Msa1377660:intergenic | 35.0% | |
| TGGATTCATCGAATTCGATA+GGG | - | tig0019964:16596-16615 | Msa1377660:intergenic | 35.0% | |
| TTGGATTCATCGAATTCGAT+AGG | - | tig0019964:16597-16616 | Msa1377660:intergenic | 35.0% | |
| CTGTTTGTGAGCAAGATAAT+GGG | - | tig0019964:16621-16640 | Msa1377660:intergenic | 35.0% | |
| AAAAAAAGAACGCACGATTG+AGG | - | tig0019964:16726-16745 | Msa1377660:intergenic | 35.0% | |
| !! | TGTGTTTCATTGGCTTTATC+TGG | + | tig0019964:17104-17123 | Msa1377660:CDS | 35.0% |
| ! | TATGTGTGGTTTAACTTCTG+GGG | - | tig0019964:17477-17496 | Msa1377660:intergenic | 35.0% |
| ! | GTATGTGTGGTTTAACTTCT+GGG | - | tig0019964:17478-17497 | Msa1377660:intergenic | 35.0% |
| ! | TGTATGTGTGGTTTAACTTC+TGG | - | tig0019964:17479-17498 | Msa1377660:intergenic | 35.0% |
| GGTTATTAGTGGGATTAATC+GGG | + | tig0019964:17544-17563 | Msa1377660:intron | 35.0% | |
| GTTATTAGTGGGATTAATCG+GGG | + | tig0019964:17545-17564 | Msa1377660:intron | 35.0% | |
| !! | AGTTGGTGATTCTATACATC+TGG | + | tig0019964:17864-17883 | Msa1377660:intron | 35.0% |
| CTGATAGCTGCATTTATCAA+CGG | - | tig0019964:18000-18019 | Msa1377660:intergenic | 35.0% | |
| ! | GTTGATAAATGCAGCTATCA+GGG | + | tig0019964:17999-18018 | Msa1377660:CDS | 35.0% |
| GCACAATGCAGTAAAACATA+TGG | - | tig0019964:18143-18162 | Msa1377660:intergenic | 35.0% | |
| GTACAAACTCTGGTATTCTA+AGG | + | tig0019964:18196-18215 | Msa1377660:intron | 35.0% | |
| ! | AGTGGTATCCTTTTATTGAC+AGG | + | tig0019964:18261-18280 | Msa1377660:intron | 35.0% |
| ! | GTGGTATCCTTTTATTGACA+GGG | + | tig0019964:18262-18281 | Msa1377660:intron | 35.0% |
| ! | TTTGAAGCCCTGTCAATAAA+AGG | - | tig0019964:18272-18291 | Msa1377660:intergenic | 35.0% |
| ! | TTTGAAACAGCTAACCAGTT+TGG | - | tig0019964:18325-18344 | Msa1377660:intergenic | 35.0% |
| !! | CTTGAATCCATGTTTTGTTC+AGG | + | tig0019964:18533-18552 | Msa1377660:intron | 35.0% |
| GAAGAAATACTTCAGACTAG+AGG | + | tig0019964:18644-18663 | Msa1377660:CDS | 35.0% | |
| ACTTCAGACTAGAGGTAAAT+AGG | + | tig0019964:18652-18671 | Msa1377660:intron | 35.0% | |
| GCAAAGAACAGTATAACTCA+TGG | - | tig0019964:18856-18875 | Msa1377660:intergenic | 35.0% | |
| ! | CTACTTGTACCTTCAGTTTT+TGG | + | tig0019964:18979-18998 | Msa1377660:intron | 35.0% |
| AGAAATAGATGACGATGATC+TGG | + | tig0019964:19015-19034 | Msa1377660:CDS | 35.0% | |
| ATATGAGGAGAAAGAGATAC+CGG | - | tig0019964:19236-19255 | Msa1377660:intergenic | 35.0% | |
| TTCAAACGTCAACTTCTGAT+TGG | + | tig0019964:19267-19286 | Msa1377660:CDS | 35.0% | |
| AGGAACTGAAACAATGAAGA+AGG | - | tig0019964:19491-19510 | Msa1377660:intergenic | 35.0% | |
| CTTCATTGTTTCAGTTCCTT+TGG | + | tig0019964:19492-19511 | Msa1377660:three_prime_UTR | 35.0% | |
| AGAAATAACTAAGTGGCCAA+AGG | - | tig0019964:19511-19530 | Msa1377660:intergenic | 35.0% | |
| ! | GATAGATAGACCGGTTCTAA+CGG | - | tig0019964:16280-16299 | Msa1377660:intergenic | 40.0% |
| CTTCTTGAAGATTGGAAACG+AGG | - | tig0019964:16485-16504 | Msa1377660:intergenic | 40.0% | |
| !! | GAGAAGTGCTTCTTGAAGAT+TGG | - | tig0019964:16493-16512 | Msa1377660:intergenic | 40.0% |
| ! | ATCATCGTTGGTGGAAGAAA+CGG | - | tig0019964:16559-16578 | Msa1377660:intergenic | 40.0% |
| ATTAGGGTTATCATCGTTGG+TGG | - | tig0019964:16568-16587 | Msa1377660:intergenic | 40.0% | |
| AGGATTAGGGTTATCATCGT+TGG | - | tig0019964:16571-16590 | Msa1377660:intergenic | 40.0% | |
| TCATCGAATTCGATAGGGTT+AGG | - | tig0019964:16591-16610 | Msa1377660:intergenic | 40.0% | |
| !! | TGTGAGCAAGATAATGGGTT+TGG | - | tig0019964:16616-16635 | Msa1377660:intergenic | 40.0% |
| GCTGTTTGTGAGCAAGATAA+TGG | - | tig0019964:16622-16641 | Msa1377660:intergenic | 40.0% | |
| CGCAAACATGGACATTGTAA+AGG | - | tig0019964:16701-16720 | Msa1377660:intergenic | 40.0% | |
| !! | TGCTGAAATGGTGTTGCTTT+AGG | + | tig0019964:16832-16851 | Msa1377660:intron | 40.0% |
| !! | GCTGAAATGGTGTTGCTTTA+GGG | + | tig0019964:16833-16852 | Msa1377660:intron | 40.0% |
| GCTTGTTCTGCTCAAGTTAA+TGG | + | tig0019964:16903-16922 | Msa1377660:CDS | 40.0% | |
| ACCTGAAATCTCAAAAGCAG+TGG | - | tig0019964:16931-16950 | Msa1377660:intergenic | 40.0% | |
| TAATAATTCAGGGACTCCTG+CGG | + | tig0019964:17079-17098 | Msa1377660:intron | 40.0% | |
| !!! | TATCTGGAGCTTTGTTTTCG+TGG | + | tig0019964:17120-17139 | Msa1377660:intron | 40.0% |
| TAATTGTGTGTTTGGTCCTG+CGG | + | tig0019964:17188-17207 | Msa1377660:intron | 40.0% | |
| AAATCAACTCTTGTTACCGC+AGG | - | tig0019964:17207-17226 | Msa1377660:intergenic | 40.0% | |
| ! | CAACTTGCTTTCACACATGA+AGG | - | tig0019964:17302-17321 | Msa1377660:intergenic | 40.0% |
| CAGCACTATTAGTGTATGTG+TGG | - | tig0019964:17491-17510 | Msa1377660:intergenic | 40.0% | |
| !!! | ACCTGGAGCATTTTAAAGCA+TGG | - | tig0019964:17765-17784 | Msa1377660:intergenic | 40.0% |
| ! | CGTTGATAAATGCAGCTATC+AGG | + | tig0019964:17998-18017 | Msa1377660:CDS | 40.0% |
| TTGTTGCTCAAAGGTGATCT+CGG | - | tig0019964:18075-18094 | Msa1377660:intergenic | 40.0% | |
| TTACAGACCTTGTTGCTCAA+AGG | - | tig0019964:18084-18103 | Msa1377660:intergenic | 40.0% | |
| ! | TGCAAATGCTCTAGTCTTCT+AGG | + | tig0019964:18160-18179 | Msa1377660:intron | 40.0% |
| !! | TTCTAAGGCGTTTGGCTAAT+TGG | + | tig0019964:18211-18230 | Msa1377660:intron | 40.0% |
| TCAATTGTACACTGATGCAG+TGG | + | tig0019964:18243-18262 | Msa1377660:intron | 40.0% | |
| AGAAATGACCAGTTGGATAG+CGG | - | tig0019964:18351-18370 | Msa1377660:intergenic | 40.0% | |
| CTATCCAACTGGTCATTTCT+TGG | + | tig0019964:18351-18370 | Msa1377660:CDS | 40.0% | |
| GGCTACGCAGAAAAAGAATT+TGG | + | tig0019964:18572-18591 | Msa1377660:CDS | 40.0% | |
| TCAGACTAGAGGTAAATAGG+AGG | + | tig0019964:18655-18674 | Msa1377660:intron | 40.0% | |
| ! | GATTACAGAGCACTTGAAAG+TGG | + | tig0019964:19037-19056 | Msa1377660:CDS | 40.0% |
| TGAATCCGTCAGAATGAGAA+GGG | - | tig0019964:19179-19198 | Msa1377660:intergenic | 40.0% | |
| ATGAATCCGTCAGAATGAGA+AGG | - | tig0019964:19180-19199 | Msa1377660:intergenic | 40.0% | |
| TCTGCTCCATCTTTGCTTTA+AGG | - | tig0019964:19396-19415 | Msa1377660:intergenic | 40.0% | |
| ATCTTGCTCACAAACAGCGA+TGG | + | tig0019964:16624-16643 | Msa1377660:CDS | 45.0% | |
| TCAACTAGGTGTGTAAGACC+TGG | - | tig0019964:16660-16679 | Msa1377660:intergenic | 45.0% | |
| GAAGAACGAGAGCTTCAACT+AGG | - | tig0019964:16674-16693 | Msa1377660:intergenic | 45.0% | |
| ACGATTGAGGAACGCAAACA+TGG | - | tig0019964:16713-16732 | Msa1377660:intergenic | 45.0% | |
| TGTTACGATTCGAGAAACCG+TGG | + | tig0019964:16878-16897 | Msa1377660:CDS | 45.0% | |
| TTGAGCAGAACAAGCTTCCA+CGG | - | tig0019964:16898-16917 | Msa1377660:intergenic | 45.0% | |
| !!! | GCCACTGCTTTTGAGATTTC+AGG | + | tig0019964:16927-16946 | Msa1377660:CDS | 45.0% |
| ! | TCCTGCGGATTGTGTTTCAT+TGG | + | tig0019964:17094-17113 | Msa1377660:CDS | 45.0% |
| ! | TTCGTGGTCAAAGCCTGTTT+TGG | + | tig0019964:17136-17155 | Msa1377660:intron | 45.0% |
| ATTAATCGGGGATCAAGCTG+CGG | + | tig0019964:17557-17576 | Msa1377660:intron | 45.0% | |
| !! | GCCATGCTTTAAAATGCTCC+AGG | + | tig0019964:17761-17780 | Msa1377660:intron | 45.0% |
| AAATGCTCCAGGTTCTACTC+TGG | + | tig0019964:17772-17791 | Msa1377660:intron | 45.0% | |
| AATGCTCCAGGTTCTACTCT+GGG | + | tig0019964:17773-17792 | Msa1377660:intron | 45.0% | |
| !! | GCTAGGGAGGCATTATTATG+CGG | + | tig0019964:17808-17827 | Msa1377660:CDS | 45.0% |
| AGCTATCAGGGATGCTGAAA+AGG | + | tig0019964:18011-18030 | Msa1377660:CDS | 45.0% | |
| GAGATCACCTTTGAGCAACA+AGG | + | tig0019964:18074-18093 | Msa1377660:CDS | 45.0% | |
| !! | CTCTGGTATTCTAAGGCGTT+TGG | + | tig0019964:18203-18222 | Msa1377660:intron | 45.0% |
| AACAGCTAACCAGTTTGGAG+TGG | - | tig0019964:18320-18339 | Msa1377660:intergenic | 45.0% | |
| TCAAATAGCCGCTATCCAAC+TGG | + | tig0019964:18340-18359 | Msa1377660:CDS | 45.0% | |
| TTGGCCAAGAAATGACCAGT+TGG | - | tig0019964:18358-18377 | Msa1377660:intergenic | 45.0% | |
| CATTTCTTGGCCAATCCACA+AGG | + | tig0019964:18364-18383 | Msa1377660:CDS | 45.0% | |
| TAGGATACTTACAGCTGCAG+AGG | - | tig0019964:18428-18447 | Msa1377660:intergenic | 45.0% | |
| ATTGAATCAACTGGAGCTGC+AGG | + | tig0019964:18600-18619 | Msa1377660:CDS | 45.0% | |
| GACTAGAGGTAAATAGGAGG+TGG | + | tig0019964:18658-18677 | Msa1377660:intron | 45.0% | |
| TAGAGGTAAATAGGAGGTGG+AGG | + | tig0019964:18661-18680 | Msa1377660:intron | 45.0% | |
| GCTGCTTGTCCAAAAACTGA+AGG | - | tig0019964:18991-19010 | Msa1377660:intergenic | 45.0% | |
| !! | TCAGTTTTTGGACAAGCAGC+AGG | + | tig0019964:18991-19010 | Msa1377660:intron | 45.0% |
| GAATGAGAAGGGGGGAAAAT+TGG | - | tig0019964:19168-19187 | Msa1377660:intergenic | 45.0% | |
| AATCCGTCAGAATGAGAAGG+GGG | - | tig0019964:19177-19196 | Msa1377660:intergenic | 45.0% | |
| GAATCCGTCAGAATGAGAAG+GGG | - | tig0019964:19178-19197 | Msa1377660:intergenic | 45.0% | |
| ACGGATTCATGCATGTGCTT+TGG | + | tig0019964:19190-19209 | Msa1377660:intron | 45.0% | |
| !! | TGCATGTGCTTTGGAGAAAC+AGG | + | tig0019964:19199-19218 | Msa1377660:intron | 45.0% |
| TGGATTTCTGCTGTGATTCC+TGG | + | tig0019964:19287-19306 | Msa1377660:CDS | 45.0% | |
| ATTTCTGCTGTGATTCCTGG+TGG | + | tig0019964:19290-19309 | Msa1377660:CDS | 45.0% | |
| AAGCAAAGATGGAGCAGAAG+TGG | + | tig0019964:19398-19417 | Msa1377660:three_prime_UTR | 45.0% | |
| TCCACGTACACCGTTAGAAC+CGG | + | tig0019964:16267-16286 | Msa1377660:five_prime_UTR | 50.0% | |
| TCGTTTCAAGATGATGCCCC+CGG | + | tig0019964:16458-16477 | Msa1377660:exon | 50.0% | |
| TGAAGATTGGAAACGAGGCC+CGG | - | tig0019964:16480-16499 | Msa1377660:intergenic | 50.0% | |
| AGCGATGGAGTTGAATCACC+AGG | + | tig0019964:16639-16658 | Msa1377660:CDS | 50.0% | |
| GCCAATGAAACACAATCCGC+AGG | - | tig0019964:17098-17117 | Msa1377660:intergenic | 50.0% | |
| ATGCTCCAGGTTCTACTCTG+GGG | + | tig0019964:17774-17793 | Msa1377660:intron | 50.0% | |
| AACAACCCCAGAGTAGAACC+TGG | - | tig0019964:17782-17801 | Msa1377660:intergenic | 50.0% | |
| !! | TTCTACTCTGGGGTTGTTGC+TGG | + | tig0019964:17784-17803 | Msa1377660:CDS | 50.0% |
| TGTGGAGATCCACTCCAAAC+TGG | + | tig0019964:18308-18327 | Msa1377660:CDS | 50.0% | |
| TTCTTGGCCAATCCACAAGG+TGG | + | tig0019964:18367-18386 | Msa1377660:CDS | 50.0% | |
| GCTGTGCAAACTGAAGACCA+AGG | - | tig0019964:18393-18412 | Msa1377660:intergenic | 50.0% | |
| GGTCTTCAGTTTGCACAGCT+TGG | + | tig0019964:18394-18413 | Msa1377660:CDS | 50.0% | |
| !! | TTACAGCTGCAGAGGCATCT+CGG | - | tig0019964:18420-18439 | Msa1377660:intergenic | 50.0% |
| AGGTAAATAGGAGGTGGAGG+AGG | + | tig0019964:18664-18683 | Msa1377660:intron | 50.0% | |
| TAAATAGGAGGTGGAGGAGG+AGG | + | tig0019964:18667-18686 | Msa1377660:intron | 50.0% | |
| TTCCCCCCTTCTCATTCTGA+CGG | + | tig0019964:19171-19190 | Msa1377660:intron | 50.0% | |
| ATCCGTCAGAATGAGAAGGG+GGG | - | tig0019964:19176-19195 | Msa1377660:intergenic | 50.0% | |
| GAAACAGGTTGCAGTGACTC+CGG | + | tig0019964:19214-19233 | Msa1377660:intron | 50.0% | |
| ! | ACCGGTTCTAACGGTGTACG+TGG | - | tig0019964:16271-16290 | Msa1377660:intergenic | 55.0% |
| CGTTTCAAGATGATGCCCCC+GGG | + | tig0019964:16459-16478 | Msa1377660:exon | 55.0% | |
| AAGATTGGAAACGAGGCCCG+GGG | - | tig0019964:16478-16497 | Msa1377660:intergenic | 55.0% | |
| GAAGATTGGAAACGAGGCCC+GGG | - | tig0019964:16479-16498 | Msa1377660:intergenic | 55.0% | |
| TGGGGTTGTTGCTGGAGCTA+GGG | + | tig0019964:17792-17811 | Msa1377660:CDS | 55.0% | |
| ACCAAGGCCACCTTGTGGAT+TGG | - | tig0019964:18377-18396 | Msa1377660:intergenic | 55.0% | |
| TGAAGACCAAGGCCACCTTG+TGG | - | tig0019964:18382-18401 | Msa1377660:intergenic | 55.0% | |
| GCTGCGCCCTGAACAAAACA+TGG | - | tig0019964:18543-18562 | Msa1377660:intergenic | 55.0% | |
| AGATTGGAAACGAGGCCCGG+GGG | - | tig0019964:16477-16496 | Msa1377660:intergenic | 60.0% | |
| CTGGGGTTGTTGCTGGAGCT+AGG | + | tig0019964:17791-17810 | Msa1377660:CDS | 60.0% | |
| GGTTGTTGCTGGAGCTAGGG+AGG | + | tig0019964:17795-17814 | Msa1377660:CDS | 60.0% | |
| GCCAATCCACAAGGTGGCCT+TGG | + | tig0019964:18373-18392 | Msa1377660:CDS | 60.0% | |
| TTGTTCAGGGCGCAGCTCGT+CGG | + | tig0019964:18547-18566 | Msa1377660:intron | 60.0% | |
| GTGGAGGAGGAGGATGAGGA+GGG | + | tig0019964:18677-18696 | Msa1377660:intron | 60.0% | |
| TGGAGGAGGAGGATGAGGAG+GGG | + | tig0019964:18678-18697 | Msa1377660:intron | 60.0% | |
| GGAGGTGGAGGAGGAGGATG+AGG | + | tig0019964:18673-18692 | Msa1377660:intron | 65.0% | |
| GGTGGAGGAGGAGGATGAGG+AGG | + | tig0019964:18676-18695 | Msa1377660:intron | 65.0% | |
| GGAGGAGGAGGATGAGGAGG+GGG | + | tig0019964:18679-18698 | Msa1377660:intron | 65.0% | |
| TCAGGGCGCAGCTCGTCGGT+TGG | + | tig0019964:18551-18570 | Msa1377660:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019964 | gene | 16260 | 19712 | 16260 | ID=Msa1377660;Name=Msa1377660 |
| tig0019964 | mRNA | 16260 | 19712 | 16260 | ID=Msa1377660-mRNA-1;Parent=Msa1377660;Name=Msa1377660-mRNA-1;_AED=0.11;_eAED=0.11;_QI=208|0.87|0.88|1|1|1|9|393|354 |
| tig0019964 | exon | 16260 | 16730 | 16260 | ID=Msa1377660-mRNA-1:exon:5732;Parent=Msa1377660-mRNA-1 |
| tig0019964 | exon | 16854 | 16948 | 16854 | ID=Msa1377660-mRNA-1:exon:5733;Parent=Msa1377660-mRNA-1 |
| tig0019964 | exon | 17090 | 17132 | 17090 | ID=Msa1377660-mRNA-1:exon:5734;Parent=Msa1377660-mRNA-1 |
| tig0019964 | exon | 17783 | 17860 | 17783 | ID=Msa1377660-mRNA-1:exon:5735;Parent=Msa1377660-mRNA-1 |
| tig0019964 | exon | 17942 | 18095 | 17942 | ID=Msa1377660-mRNA-1:exon:5736;Parent=Msa1377660-mRNA-1 |
| tig0019964 | exon | 18283 | 18435 | 18283 | ID=Msa1377660-mRNA-1:exon:5737;Parent=Msa1377660-mRNA-1 |
| tig0019964 | exon | 18555 | 18665 | 18555 | ID=Msa1377660-mRNA-1:exon:5738;Parent=Msa1377660-mRNA-1 |
| tig0019964 | exon | 18995 | 19063 | 18995 | ID=Msa1377660-mRNA-1:exon:5739;Parent=Msa1377660-mRNA-1 |
| tig0019964 | exon | 19221 | 19712 | 19221 | ID=Msa1377660-mRNA-1:exon:5740;Parent=Msa1377660-mRNA-1 |
| tig0019964 | five_prime_UTR | 16260 | 16467 | 16260 | ID=Msa1377660-mRNA-1:five_prime_utr;Parent=Msa1377660-mRNA-1 |
| tig0019964 | CDS | 16468 | 16730 | 16468 | ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1 |
| tig0019964 | CDS | 16854 | 16948 | 16854 | ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1 |
| tig0019964 | CDS | 17090 | 17132 | 17090 | ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1 |
| tig0019964 | CDS | 17783 | 17860 | 17783 | ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1 |
| tig0019964 | CDS | 17942 | 18095 | 17942 | ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1 |
| tig0019964 | CDS | 18283 | 18435 | 18283 | ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1 |
| tig0019964 | CDS | 18555 | 18665 | 18555 | ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1 |
| tig0019964 | CDS | 18995 | 19063 | 18995 | ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1 |
| tig0019964 | CDS | 19221 | 19319 | 19221 | ID=Msa1377660-mRNA-1:cds;Parent=Msa1377660-mRNA-1 |
| tig0019964 | three_prime_UTR | 19320 | 19712 | 19320 | ID=Msa1377660-mRNA-1:three_prime_utr;Parent=Msa1377660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
