Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364060 | XP_003597571.1 | 91.777 | 377 | 8 | 1 | 1 | 354 | 1 | 377 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364060 | sp|A6H213|SURE_FLAPJ | 30.435 | 230 | 116 | 9 | 49 | 246 | 2 | 219 | 9.24e-20 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364060 | G7IS42 | 91.777 | 377 | 8 | 1 | 1 | 354 | 1 | 377 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1364060 | -0.835749 | 1.399750e-56 | -8.615850e-47 |
| Msa0004060 | Msa1364060 | 0.806471 | 8.096690e-50 | -8.615850e-47 |
| Msa0027580 | Msa1364060 | 0.816638 | 4.987553e-52 | -8.615850e-47 |
| Msa0072170 | Msa1364060 | 0.813024 | 3.156133e-51 | -8.615850e-47 |
| Msa0075340 | Msa1364060 | 0.815207 | 1.040269e-51 | -8.615850e-47 |
| Msa0100800 | Msa1364060 | 0.838199 | 3.313810e-57 | -8.615850e-47 |
| Msa0120540 | Msa1364060 | 0.815191 | 1.049019e-51 | -8.615850e-47 |
| Msa1350690 | Msa1364060 | 0.803081 | 4.133320e-49 | -8.615850e-47 |
| Msa1355700 | Msa1364060 | 0.817608 | 3.019065e-52 | -8.615850e-47 |
| Msa1364060 | Msa1377660 | 0.885863 | 5.632989e-72 | -8.615850e-47 |
| Msa1364060 | Msa1383350 | 0.807783 | 4.270187e-50 | -8.615850e-47 |
| Msa1364060 | Msa1398170 | 0.851077 | 1.122509e-60 | -8.615850e-47 |
| Msa1364060 | Msa1425340 | 0.807161 | 5.786866e-50 | -8.615850e-47 |
| Msa1364060 | Msa1426920 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
| Msa1364060 | Msa1438450 | 0.823175 | 1.595705e-53 | -8.615850e-47 |
| Msa0639120 | Msa1364060 | 0.811462 | 6.918030e-51 | -8.615850e-47 |
| Msa0646130 | Msa1364060 | 0.806633 | 7.482105e-50 | -8.615850e-47 |
| Msa0654870 | Msa1364060 | 0.804240 | 2.375253e-49 | -8.615850e-47 |
| Msa0707390 | Msa1364060 | 0.821472 | 3.965265e-53 | -8.615850e-47 |
| Msa0711070 | Msa1364060 | 0.804131 | 2.503045e-49 | -8.615850e-47 |
| Msa0711490 | Msa1364060 | 0.808503 | 2.999199e-50 | -8.615850e-47 |
| Msa0712310 | Msa1364060 | 0.810510 | 1.111913e-50 | -8.615850e-47 |
| Msa0720370 | Msa1364060 | 0.819955 | 8.851423e-53 | -8.615850e-47 |
| Msa0752620 | Msa1364060 | 0.817564 | 3.089274e-52 | -8.615850e-47 |
| Msa0795010 | Msa1364060 | 0.806178 | 9.330221e-50 | -8.615850e-47 |
| Msa0795030 | Msa1364060 | 0.813252 | 2.812557e-51 | -8.615850e-47 |
| Msa0824730 | Msa1364060 | 0.806448 | 8.186320e-50 | -8.615850e-47 |
| Msa0830990 | Msa1364060 | 0.806595 | 7.621362e-50 | -8.615850e-47 |
| Msa0127040 | Msa1364060 | 0.805282 | 1.439476e-49 | -8.615850e-47 |
| Msa0193600 | Msa1364060 | 0.804969 | 1.673282e-49 | -8.615850e-47 |
| Msa0224150 | Msa1364060 | 0.919643 | 3.483632e-87 | -8.615850e-47 |
| Msa0227310 | Msa1364060 | -0.804084 | 2.559549e-49 | -8.615850e-47 |
| Msa1280620 | Msa1364060 | 0.808346 | 3.240740e-50 | -8.615850e-47 |
| Msa1294960 | Msa1364060 | 0.836956 | 6.904200e-57 | -8.615850e-47 |
| Msa1298550 | Msa1364060 | -0.800230 | 1.588832e-48 | -8.615850e-47 |
| Msa1318620 | Msa1364060 | 0.802932 | 4.437481e-49 | -8.615850e-47 |
| Msa1330890 | Msa1364060 | -0.828784 | 7.414124e-55 | -8.615850e-47 |
| Msa1333970 | Msa1364060 | 0.807501 | 4.901841e-50 | -8.615850e-47 |
| Msa0381700 | Msa1364060 | 0.801720 | 7.881864e-49 | -8.615850e-47 |
| Msa0387910 | Msa1364060 | 0.806348 | 8.591427e-50 | -8.615850e-47 |
| Msa0436200 | Msa1364060 | 0.842609 | 2.328683e-58 | -8.615850e-47 |
| Msa0465920 | Msa1364060 | 0.800425 | 1.450318e-48 | -8.615850e-47 |
| Msa0465960 | Msa1364060 | 0.801684 | 8.015231e-49 | -8.615850e-47 |
| Msa0469910 | Msa1364060 | -0.807636 | 4.589367e-50 | -8.615850e-47 |
| Msa1030930 | Msa1364060 | 0.806842 | 6.759566e-50 | -8.615850e-47 |
| Msa1070050 | Msa1364060 | 0.815999 | 6.932687e-52 | -8.615850e-47 |
| Msa1079620 | Msa1364060 | 0.807906 | 4.019796e-50 | -8.615850e-47 |
| Msa1089270 | Msa1364060 | 0.800090 | 1.696336e-48 | -8.615850e-47 |
| Msa1098720 | Msa1364060 | -0.811478 | 6.861606e-51 | -8.615850e-47 |
| Msa0252240 | Msa1364060 | 0.814921 | 1.204568e-51 | -8.615850e-47 |
| Msa0262480 | Msa1364060 | 0.806660 | 7.386517e-50 | -8.615850e-47 |
| Msa0265160 | Msa1364060 | 0.812056 | 5.135985e-51 | -8.615850e-47 |
| Msa0265290 | Msa1364060 | 0.853180 | 2.833270e-61 | -8.615850e-47 |
| Msa0266210 | Msa1364060 | 0.808206 | 3.470629e-50 | -8.615850e-47 |
| Msa0287670 | Msa1364060 | 0.805058 | 1.603032e-49 | -8.615850e-47 |
| Msa0291520 | Msa1364060 | 0.817612 | 3.013323e-52 | -8.615850e-47 |
| Msa0300350 | Msa1364060 | 0.815786 | 7.735430e-52 | -8.615850e-47 |
| Msa1114040 | Msa1364060 | 0.803952 | 2.727124e-49 | -8.615850e-47 |
| Msa1125790 | Msa1364060 | -0.800292 | 1.543544e-48 | -8.615850e-47 |
| Msa1126120 | Msa1364060 | -0.826566 | 2.528048e-54 | -8.615850e-47 |
| Msa1136790 | Msa1364060 | 0.864722 | 9.912118e-65 | -8.615850e-47 |
| Msa1172130 | Msa1364060 | -0.837852 | 4.068952e-57 | -8.615850e-47 |
| Msa1223330 | Msa1364060 | 0.805910 | 1.062488e-49 | -8.615850e-47 |
| Msa0513440 | Msa1364060 | 0.811377 | 7.216185e-51 | -8.615850e-47 |
| Msa0524590 | Msa1364060 | 0.825634 | 4.211041e-54 | -8.615850e-47 |
| Msa0550570 | Msa1364060 | 0.808353 | 3.228949e-50 | -8.615850e-47 |
| Msa0561430 | Msa1364060 | 0.804057 | 2.593453e-49 | -8.615850e-47 |
| Msa0590650 | Msa1364060 | 0.800439 | 1.440663e-48 | -8.615850e-47 |
| Msa0869010 | Msa1364060 | 0.801134 | 1.038943e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364060 | MtrunA17_Chr2g0330031 | 91.777 | 377 | 8 | 1 | 1 | 354 | 1 | 377 | 0.0 | 701 |
| Msa1364060 | MtrunA17_Chr1g0205501 | 32.219 | 329 | 165 | 5 | 45 | 349 | 3 | 297 | 8.85e-55 | 182 |
| Msa1364060 | MtrunA17_Chr5g0394431 | 32.229 | 332 | 162 | 7 | 45 | 349 | 3 | 298 | 2.08e-53 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364060 | AT1G72880.2 | 57.480 | 381 | 131 | 7 | 2 | 354 | 8 | 385 | 1.01e-143 | 412 |
| Msa1364060 | AT1G72880.1 | 57.480 | 381 | 131 | 7 | 2 | 354 | 8 | 385 | 1.01e-143 | 412 |
| Msa1364060 | AT4G14930.1 | 32.407 | 324 | 164 | 6 | 50 | 349 | 13 | 305 | 1.01e-49 | 169 |
| Msa1364060 | AT4G14930.2 | 41.951 | 205 | 95 | 2 | 50 | 230 | 13 | 217 | 1.69e-48 | 166 |
Find 110 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCTCCATCTTTGCTTTA+AGG | 0.101982 | tig0018106:+117752 | None:intergenic |
| TTTCCCCTTTCTTCATTTCT+AGG | 0.132640 | tig0018106:-120775 | Msa1364060:five_prime_UTR |
| TTTAGGGATAAATCTGTTTC+TGG | 0.178353 | tig0018106:-120296 | Msa1364060:intron |
| GAAGTATTTCTTCACTTTAT+TGG | 0.213458 | tig0018106:+118511 | None:intergenic |
| TTCTACTCTGGGGTTGTTGC+TGG | 0.231757 | tig0018106:-119361 | Msa1364060:CDS |
| TGTGTTTCATTGGCTTTATC+TGG | 0.234130 | tig0018106:-120041 | Msa1364060:CDS |
| AAAAGCTTCTTGTAATTTCT+TGG | 0.239883 | tig0018106:-117603 | Msa1364060:three_prime_UTR |
| GCTTGTTCTGCTCAAGTTAA+TGG | 0.246805 | tig0018106:-120242 | Msa1364060:CDS |
| TGGATTTCTGCTGTGATTCC+TGG | 0.252539 | tig0018106:-117858 | Msa1364060:CDS |
| AATTCGATAGGGTTAGGATT+AGG | 0.265411 | tig0018106:+120562 | None:intergenic |
| CTTCATTGTTTCAGTTCCTT+TGG | 0.272424 | tig0018106:-117653 | Msa1364060:three_prime_UTR |
| CGTTGATAAATGCAGCTATC+AGG | 0.280646 | tig0018106:-119147 | Msa1364060:CDS |
| TGAAGAAAGAAAATTGAAAT+TGG | 0.282214 | tig0018106:+120818 | None:intergenic |
| TTTATTGAAATGTGCTCTAA+TGG | 0.283892 | tig0018106:-117463 | Msa1364060:three_prime_UTR |
| TTCTTCACTTTATTGGTATC+AGG | 0.291732 | tig0018106:+118518 | None:intergenic |
| TATATCATGTTATAGGAAAA+AGG | 0.296377 | tig0018106:-119218 | Msa1364060:intron |
| ATTCGATAGGGTTAGGATTA+GGG | 0.300748 | tig0018106:+120563 | None:intergenic |
| CTATCCAACTGGTCATTTCT+TGG | 0.301621 | tig0018106:-118794 | Msa1364060:CDS |
| CAATCCAAAGTTTAACTATC+TGG | 0.306685 | tig0018106:+117490 | None:intergenic |
| GCCAATCCACAAGGTGGCCT+TGG | 0.331528 | tig0018106:-118772 | Msa1364060:CDS |
| TCCTGCGGATTGTGTTTCAT+TGG | 0.339731 | tig0018106:-120051 | Msa1364060:CDS |
| GAAATGAAGAAAGGGGAAAA+AGG | 0.341908 | tig0018106:+120779 | None:intergenic |
| TTTGAAACAGCTAACCAGTT+TGG | 0.357202 | tig0018106:+118823 | None:intergenic |
| TTGGAGATTATTGAATCAAC+TGG | 0.357915 | tig0018106:-118554 | Msa1364060:CDS |
| GCTGTTTGTGAGCAAGATAA+TGG | 0.364803 | tig0018106:+120525 | None:intergenic |
| TTTCTTCCTTAAAGCAAAGA+TGG | 0.380472 | tig0018106:-117758 | Msa1364060:three_prime_UTR |
| TTCAAACGTCAACTTCTGAT+TGG | 0.384107 | tig0018106:-117878 | Msa1364060:CDS |
| CATTATCAATATCATTAAAC+TGG | 0.385947 | tig0018106:-119306 | Msa1364060:intron |
| TCATCGAATTCGATAGGGTT+AGG | 0.387109 | tig0018106:+120556 | None:intergenic |
| ATTGAAATCAGCTATTGAAT+TGG | 0.387679 | tig0018106:+117712 | None:intergenic |
| AAAGCTTCTTGTAATTTCTT+GGG | 0.388567 | tig0018106:-117602 | Msa1364060:three_prime_UTR |
| TTCCCCTTTCTTCATTTCTA+GGG | 0.392444 | tig0018106:-120774 | Msa1364060:five_prime_UTR |
| GAGAAGTGCTTCTTGAAGAT+TGG | 0.399004 | tig0018106:+120654 | None:intergenic |
| CTGGGGTTGTTGCTGGAGCT+AGG | 0.415674 | tig0018106:-119354 | Msa1364060:CDS |
| TGGGGTTGTTGCTGGAGCTA+GGG | 0.421199 | tig0018106:-119353 | Msa1364060:CDS |
| CTGTTTGTGAGCAAGATAAT+GGG | 0.422044 | tig0018106:+120526 | None:intergenic |
| GGTCTTCAGTTTGCACAGCT+TGG | 0.423296 | tig0018106:-118751 | Msa1364060:CDS |
| TGAAGATTGGAAACGAGGCC+CGG | 0.439122 | tig0018106:+120667 | None:intergenic |
| TCTTCCAGATAGTTAAACTT+TGG | 0.439867 | tig0018106:-117494 | Msa1364060:three_prime_UTR |
| TGTGAGCAAGATAATGGGTT+TGG | 0.440916 | tig0018106:+120531 | None:intergenic |
| AAGTCAAGAAACTGATTTCA+AGG | 0.442158 | tig0018106:-119191 | Msa1364060:CDS |
| AGAAATAGATGACGATGATC+TGG | 0.446591 | tig0018106:-118130 | Msa1364060:CDS |
| GAAGATTGGAAACGAGGCCC+GGG | 0.453439 | tig0018106:+120668 | None:intergenic |
| TTTAATGATATTGATAATGA+TGG | 0.457599 | tig0018106:+119310 | None:intergenic |
| ATTGAATCAACTGGAGCTGC+AGG | 0.468057 | tig0018106:-118545 | Msa1364060:CDS |
| GATATTACAAACAGACCAAA+TGG | 0.470062 | tig0018106:+117562 | None:intergenic |
| AATGCTCCAGGTTCTACTCT+GGG | 0.470332 | tig0018106:-119372 | Msa1364060:intron |
| AAACCCTAGAAATGAAGAAA+GGG | 0.471301 | tig0018106:+120771 | None:intergenic |
| AAATGCTCCAGGTTCTACTC+TGG | 0.471886 | tig0018106:-119373 | Msa1364060:intron |
| AGCTATCAGGGATGCTGAAA+AGG | 0.478095 | tig0018106:-119134 | Msa1364060:CDS |
| TGTGGAGATCCACTCCAAAC+TGG | 0.479831 | tig0018106:-118837 | Msa1364060:CDS |
| TCAAATAGCCGCTATCCAAC+TGG | 0.485041 | tig0018106:-118805 | Msa1364060:CDS |
| TCCACGTACACCGTTAGAAC+CGG | 0.490654 | tig0018106:-120882 | Msa1364060:five_prime_UTR |
| ACCAAGGCCACCTTGTGGAT+TGG | 0.492533 | tig0018106:+118771 | None:intergenic |
| TCGTTTCAAGATGATGCCCC+CGG | 0.496104 | tig0018106:-120686 | Msa1364060:exon |
| AGGATTAGGGTTATCATCGT+TGG | 0.497932 | tig0018106:+120576 | None:intergenic |
| TTGTTCAGGGCGCAGCTCGT+CGG | 0.499499 | tig0018106:-118598 | Msa1364060:intron |
| AAAACCCTAGAAATGAAGAA+AGG | 0.500295 | tig0018106:+120770 | None:intergenic |
| CGCAAACATGGACATTGTAA+AGG | 0.507879 | tig0018106:+120446 | None:intergenic |
| TTGGATTCATCGAATTCGAT+AGG | 0.510175 | tig0018106:+120550 | None:intergenic |
| TGAATATCACTCTCAATATG+AGG | 0.515335 | tig0018106:+117897 | None:intergenic |
| ATCATCGTTGGTGGAAGAAA+CGG | 0.515938 | tig0018106:+120588 | None:intergenic |
| TTGTTGCTCAAAGGTGATCT+CGG | 0.524280 | tig0018106:+119073 | None:intergenic |
| TTTGATTCATCTTGTTGTGA+AGG | 0.524748 | tig0018106:+120616 | None:intergenic |
| ATTAGGGTTATCATCGTTGG+TGG | 0.527462 | tig0018106:+120579 | None:intergenic |
| AGGAACTGAAACAATGAAGA+AGG | 0.531500 | tig0018106:+117657 | None:intergenic |
| AAGCAAAGATGGAGCAGAAG+TGG | 0.533404 | tig0018106:-117747 | Msa1364060:three_prime_UTR |
| TTACAGACCTTGTTGCTCAA+AGG | 0.534339 | tig0018106:+119064 | None:intergenic |
| GGTTGTTGCTGGAGCTAGGG+AGG | 0.535432 | tig0018106:-119350 | Msa1364060:CDS |
| GTTGATAAATGCAGCTATCA+GGG | 0.535579 | tig0018106:-119146 | Msa1364060:CDS |
| TTGAGCAGAACAAGCTTCCA+CGG | 0.545035 | tig0018106:+120250 | None:intergenic |
| TCAGGGCGCAGCTCGTCGGT+TGG | 0.546235 | tig0018106:-118594 | Msa1364060:intron |
| AGATGAGATGATAGATAGAC+CGG | 0.547804 | tig0018106:+120863 | None:intergenic |
| GAAGAACGAGAGCTTCAACT+AGG | 0.548339 | tig0018106:+120473 | None:intergenic |
| ATATGAGGAGAAAGAGATAC+CGG | 0.550193 | tig0018106:+117912 | None:intergenic |
| TGGATTCATCGAATTCGATA+GGG | 0.554963 | tig0018106:+120551 | None:intergenic |
| GATTACAGAGCACTTGAAAG+TGG | 0.567031 | tig0018106:-118108 | Msa1364060:CDS |
| ATTTCTGCTGTGATTCCTGG+TGG | 0.569344 | tig0018106:-117855 | Msa1364060:CDS |
| GCCAATGAAACACAATCCGC+AGG | 0.578293 | tig0018106:+120050 | None:intergenic |
| GATAGATAGACCGGTTCTAA+CGG | 0.581569 | tig0018106:+120872 | None:intergenic |
| AAGATTGGAAACGAGGCCCG+GGG | 0.581766 | tig0018106:+120669 | None:intergenic |
| CATTTCTTGGCCAATCCACA+AGG | 0.583050 | tig0018106:-118781 | Msa1364060:CDS |
| AATTGACTAAGCAAAGTATG+TGG | 0.583954 | tig0018106:-118855 | Msa1364060:CDS |
| GAAACAGGTTGCAGTGACTC+CGG | 0.585349 | tig0018106:-117931 | Msa1364060:intron |
| CAAATCAAGAAATAACTAAG+TGG | 0.588283 | tig0018106:+117630 | None:intergenic |
| ACGATTGAGGAACGCAAACA+TGG | 0.602918 | tig0018106:+120434 | None:intergenic |
| ACCGGTTCTAACGGTGTACG+TGG | 0.602932 | tig0018106:+120881 | None:intergenic |
| CTTCTTGAAGATTGGAAACG+AGG | 0.607887 | tig0018106:+120662 | None:intergenic |
| AGAAATAACTAAGTGGCCAA+AGG | 0.608629 | tig0018106:+117637 | None:intergenic |
| CTGATAGCTGCATTTATCAA+CGG | 0.609132 | tig0018106:+119148 | None:intergenic |
| ACCTGAAATCTCAAAAGCAG+TGG | 0.609300 | tig0018106:+120217 | None:intergenic |
| AACAGCTAACCAGTTTGGAG+TGG | 0.612572 | tig0018106:+118828 | None:intergenic |
| ATCTTGCTCACAAACAGCGA+TGG | 0.615557 | tig0018106:-120520 | Msa1364060:CDS |
| TTGGCCAAGAAATGACCAGT+TGG | 0.621148 | tig0018106:+118790 | None:intergenic |
| TAGGATACTTACAGCTGCAG+AGG | 0.621441 | tig0018106:+118720 | None:intergenic |
| AACCCTAGAAATGAAGAAAG+GGG | 0.628453 | tig0018106:+120772 | None:intergenic |
| TTACAGCTGCAGAGGCATCT+CGG | 0.632794 | tig0018106:+118728 | None:intergenic |
| GAGATCACCTTTGAGCAACA+AGG | 0.634652 | tig0018106:-119071 | Msa1364060:intron |
| AGCGATGGAGTTGAATCACC+AGG | 0.636526 | tig0018106:-120505 | Msa1364060:CDS |
| TAATAATTCAGGGACTCCTG+CGG | 0.636885 | tig0018106:-120066 | Msa1364060:intron |
| TCAACTAGGTGTGTAAGACC+TGG | 0.638164 | tig0018106:+120487 | None:intergenic |
| AGAAATGACCAGTTGGATAG+CGG | 0.646911 | tig0018106:+118797 | None:intergenic |
| GAAGAAATACTTCAGACTAG+AGG | 0.658962 | tig0018106:-118501 | Msa1364060:intron |
| ATGCTCCAGGTTCTACTCTG+GGG | 0.670311 | tig0018106:-119371 | Msa1364060:intron |
| TTCTTGGCCAATCCACAAGG+TGG | 0.682503 | tig0018106:-118778 | Msa1364060:CDS |
| TGTTACGATTCGAGAAACCG+TGG | 0.686133 | tig0018106:-120267 | Msa1364060:CDS |
| TGAAGACCAAGGCCACCTTG+TGG | 0.695105 | tig0018106:+118766 | None:intergenic |
| GCTAGGGAGGCATTATTATG+CGG | 0.703521 | tig0018106:-119337 | Msa1364060:CDS |
| GCTGTGCAAACTGAAGACCA+AGG | 0.760862 | tig0018106:+118755 | None:intergenic |
| AGATTGGAAACGAGGCCCGG+GGG | 0.763136 | tig0018106:+120670 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTTTGATTTTTTTGT+TGG | - | tig0018106:117969-117988 | Msa1364060:intron | 10.0% |
| !!! | TAAATCAAATTTTTGTTTTT+TGG | - | tig0018106:118174-118193 | Msa1364060:intron | 10.0% |
| !!! | AAATCAAATTTTTGTTTTTT+GGG | - | tig0018106:118175-118194 | Msa1364060:intron | 10.0% |
| !! | TTAGTAATTTATAATAATTC+AGG | - | tig0018106:118267-118286 | Msa1364060:intron | 10.0% |
| !! | TAGTAATTTATAATAATTCA+GGG | - | tig0018106:118268-118287 | Msa1364060:intron | 10.0% |
| !!! | AATCAAATTTTTGTTTTTTG+GGG | - | tig0018106:118176-118195 | Msa1364060:intron | 15.0% |
| !!! | TTTAATGATATTGATAATGA+TGG | + | tig0018106:119037-119056 | None:intergenic | 15.0% |
| !! | TGAAGAAAGAAAATTGAAAT+TGG | + | tig0018106:117529-117548 | None:intergenic | 20.0% |
| !!! | ATCAAATTTTTGTTTTTTGG+GGG | - | tig0018106:118177-118196 | Msa1364060:intron | 20.0% |
| !!! | TGATTATGTAAAATTGATTC+TGG | - | tig0018106:118435-118454 | Msa1364060:intron | 20.0% |
| !!! | TCAAGTTAGAATAATTTTGA+AGG | - | tig0018106:118578-118597 | Msa1364060:CDS | 20.0% |
| !! | CATTATCAATATCATTAAAC+TGG | - | tig0018106:119038-119057 | Msa1364060:intron | 20.0% |
| !! | TTTCATTAGAGATTATGAAT+TGG | - | tig0018106:119098-119117 | Msa1364060:CDS | 20.0% |
| !! | TATATCATGTTATAGGAAAA+AGG | - | tig0018106:119126-119145 | Msa1364060:CDS | 20.0% |
| !!! | ATATTCAGAAAGCAATTTTT+GGG | + | tig0018106:119244-119263 | None:intergenic | 20.0% |
| !!! | AATATTCAGAAAGCAATTTT+TGG | + | tig0018106:119245-119264 | None:intergenic | 20.0% |
| !! | GAACAGATTAATAATCTAAA+AGG | + | tig0018106:120077-120096 | None:intergenic | 20.0% |
| !! | ATTTTTGTTAGTTGCTGAAA+TGG | - | tig0018106:118019-118038 | Msa1364060:intron | 25.0% |
| ! | TAATAAATGCTAACCAAAAC+AGG | + | tig0018106:118351-118370 | None:intergenic | 25.0% |
| ! | CAAACACACAATTAATTTAC+GGG | + | tig0018106:118381-118400 | None:intergenic | 25.0% |
| ! | CCAAACACACAATTAATTTA+CGG | + | tig0018106:118382-118401 | None:intergenic | 25.0% |
| !!! | CTATACTCTAGAATCAATTT+TGG | - | tig0018106:118647-118666 | Msa1364060:intron | 25.0% |
| !!! | TTTGAATTTCAGGTTATTAG+TGG | - | tig0018106:118732-118751 | Msa1364060:CDS | 25.0% |
| !!! | TTGAATTTCAGGTTATTAGT+GGG | - | tig0018106:118733-118752 | Msa1364060:CDS | 25.0% |
| !!! | ATAAATCTGAGTTCTGAAAT+TGG | - | tig0018106:118822-118841 | Msa1364060:CDS | 25.0% |
| ! | GAATATTACAAGACAGAAAA+TGG | + | tig0018106:118863-118882 | None:intergenic | 25.0% |
| ! | AAACACAAATCTCTATAACA+AGG | + | tig0018106:118938-118957 | None:intergenic | 25.0% |
| ! | ATATCATTAAACTGGTAAGT+TGG | - | tig0018106:119046-119065 | Msa1364060:intron | 25.0% |
| ! | GGTATCATATATCATGTTAT+AGG | - | tig0018106:119119-119138 | Msa1364060:CDS | 25.0% |
| !! | GAAGTATTTCTTCACTTTAT+TGG | + | tig0018106:119836-119855 | None:intergenic | 25.0% |
| ! | AACACATAATGTTGTATGAA+GGG | + | tig0018106:120099-120118 | None:intergenic | 25.0% |
| ! | TAACACATAATGTTGTATGA+AGG | + | tig0018106:120100-120119 | None:intergenic | 25.0% |
| ! | ACTATATTGTATGTTCTTGA+TGG | - | tig0018106:120312-120331 | Msa1364060:intron | 25.0% |
| !! | TCTTGATGGTAATATCTTTA+TGG | - | tig0018106:120326-120345 | Msa1364060:intron | 25.0% |
| !! | CTTGATGGTAATATCTTTAT+GGG | - | tig0018106:120327-120346 | Msa1364060:intron | 25.0% |
| ! | ATTGAAATCAGCTATTGAAT+TGG | + | tig0018106:120635-120654 | None:intergenic | 25.0% |
| ! | CAAATCAAGAAATAACTAAG+TGG | + | tig0018106:120717-120736 | None:intergenic | 25.0% |
| ! | AAAAGCTTCTTGTAATTTCT+TGG | - | tig0018106:120741-120760 | Msa1364060:five_prime_UTR | 25.0% |
| ! | AAAGCTTCTTGTAATTTCTT+GGG | - | tig0018106:120742-120761 | Msa1364060:five_prime_UTR | 25.0% |
| !!! | TGTTTTAGAAAAATGCCATT+TGG | - | tig0018106:120767-120786 | Msa1364060:five_prime_UTR | 25.0% |
| ! | TTTATTGAAATGTGCTCTAA+TGG | - | tig0018106:120881-120900 | Msa1364060:five_prime_UTR | 25.0% |
| AAACCCTAGAAATGAAGAAA+GGG | + | tig0018106:117576-117595 | None:intergenic | 30.0% | |
| AAAACCCTAGAAATGAAGAA+AGG | + | tig0018106:117577-117596 | None:intergenic | 30.0% | |
| ! | TTTGATTCATCTTGTTGTGA+AGG | + | tig0018106:117731-117750 | None:intergenic | 30.0% |
| TTTAGGGATAAATCTGTTTC+TGG | - | tig0018106:118048-118067 | Msa1364060:intron | 30.0% | |
| CCGTAAATTAATTGTGTGTT+TGG | - | tig0018106:118379-118398 | Msa1364060:intron | 30.0% | |
| TCTAACTTGAAGCTAGAATT+TGG | + | tig0018106:118568-118587 | None:intergenic | 30.0% | |
| CATGATGTGATTTGAATTTC+AGG | - | tig0018106:118722-118741 | Msa1364060:intron | 30.0% | |
| AGGTTATTAGTGGGATTAAT+CGG | - | tig0018106:118742-118761 | Msa1364060:CDS | 30.0% | |
| ACATGTAAGTTGCTAACTTA+TGG | - | tig0018106:118784-118803 | Msa1364060:CDS | 30.0% | |
| TAAGTTGCTAACTTATGGTT+AGG | - | tig0018106:118789-118808 | Msa1364060:CDS | 30.0% | |
| AAGTTGCTAACTTATGGTTA+GGG | - | tig0018106:118790-118809 | Msa1364060:CDS | 30.0% | |
| TATAACAAGGCTGCAAATTA+TGG | + | tig0018106:118925-118944 | None:intergenic | 30.0% | |
| ! | AAGTCAAGAAACTGATTTCA+AGG | - | tig0018106:119153-119172 | Msa1364060:CDS | 30.0% |
| CACAATGCAGTAAAACATAT+GGG | + | tig0018106:119341-119360 | None:intergenic | 30.0% | |
| TCTTTCAATTGTACAAACTC+TGG | - | tig0018106:119385-119404 | Msa1364060:intron | 30.0% | |
| AATTGACTAAGCAAAGTATG+TGG | - | tig0018106:119489-119508 | Msa1364060:intron | 30.0% | |
| CACATGTTTGTATGTAATGT+AGG | + | tig0018106:119646-119665 | None:intergenic | 30.0% | |
| ! | TGATGTTTTCTGTCTATTCT+TGG | - | tig0018106:119672-119691 | Msa1364060:intron | 30.0% |
| ! | GATGTTTTCTGTCTATTCTT+GGG | - | tig0018106:119673-119692 | Msa1364060:intron | 30.0% |
| !! | TTGAATCCATGTTTTGTTCA+GGG | - | tig0018106:119733-119752 | Msa1364060:intron | 30.0% |
| TTGGAGATTATTGAATCAAC+TGG | - | tig0018106:119790-119809 | Msa1364060:intron | 30.0% | |
| TTCTTCACTTTATTGGTATC+AGG | + | tig0018106:119829-119848 | None:intergenic | 30.0% | |
| GTACAGAAGATAACAATTTG+TGG | - | tig0018106:119972-119991 | Msa1364060:intron | 30.0% | |
| AGATAACAATTTGTGGAGAA+TGG | - | tig0018106:119979-119998 | Msa1364060:intron | 30.0% | |
| TGAATATCACTCTCAATATG+AGG | + | tig0018106:120450-120469 | None:intergenic | 30.0% | |
| !!! | TTTTTAATTTACTGTCCACC+AGG | + | tig0018106:120507-120526 | None:intergenic | 30.0% |
| TTTCTTCCTTAAAGCAAAGA+TGG | - | tig0018106:120586-120605 | Msa1364060:CDS | 30.0% | |
| GATATTACAAACAGACCAAA+TGG | + | tig0018106:120785-120804 | None:intergenic | 30.0% | |
| ATCTATTGCTAGCAAAAAAC+TGG | - | tig0018106:120802-120821 | Msa1364060:five_prime_UTR | 30.0% | |
| TCTTCCAGATAGTTAAACTT+TGG | - | tig0018106:120850-120869 | Msa1364060:five_prime_UTR | 30.0% | |
| CAATCCAAAGTTTAACTATC+TGG | + | tig0018106:120857-120876 | None:intergenic | 30.0% | |
| AGATGAGATGATAGATAGAC+CGG | + | tig0018106:117484-117503 | None:intergenic | 35.0% | |
| GAAATGAAGAAAGGGGAAAA+AGG | + | tig0018106:117568-117587 | None:intergenic | 35.0% | |
| TTTCCCCTTTCTTCATTTCT+AGG | - | tig0018106:117569-117588 | Msa1364060:three_prime_UTR | 35.0% | |
| TTCCCCTTTCTTCATTTCTA+GGG | - | tig0018106:117570-117589 | Msa1364060:three_prime_UTR | 35.0% | |
| AACCCTAGAAATGAAGAAAG+GGG | + | tig0018106:117575-117594 | None:intergenic | 35.0% | |
| ATTCGATAGGGTTAGGATTA+GGG | + | tig0018106:117784-117803 | None:intergenic | 35.0% | |
| AATTCGATAGGGTTAGGATT+AGG | + | tig0018106:117785-117804 | None:intergenic | 35.0% | |
| TGGATTCATCGAATTCGATA+GGG | + | tig0018106:117796-117815 | None:intergenic | 35.0% | |
| TTGGATTCATCGAATTCGAT+AGG | + | tig0018106:117797-117816 | None:intergenic | 35.0% | |
| CTGTTTGTGAGCAAGATAAT+GGG | + | tig0018106:117821-117840 | None:intergenic | 35.0% | |
| AAAAAAAGAACGCACGATTG+AGG | + | tig0018106:117926-117945 | None:intergenic | 35.0% | |
| !! | TGTGTTTCATTGGCTTTATC+TGG | - | tig0018106:118303-118322 | Msa1364060:intron | 35.0% |
| ! | TATGTGTGGTTTAACTTCTG+GGG | + | tig0018106:118676-118695 | None:intergenic | 35.0% |
| ! | GTATGTGTGGTTTAACTTCT+GGG | + | tig0018106:118677-118696 | None:intergenic | 35.0% |
| ! | TGTATGTGTGGTTTAACTTC+TGG | + | tig0018106:118678-118697 | None:intergenic | 35.0% |
| GGTTATTAGTGGGATTAATC+GGG | - | tig0018106:118743-118762 | Msa1364060:CDS | 35.0% | |
| GTTATTAGTGGGATTAATCG+GGG | - | tig0018106:118744-118763 | Msa1364060:CDS | 35.0% | |
| !! | AGTTGGTGATTCTATACATC+TGG | - | tig0018106:119063-119082 | Msa1364060:intron | 35.0% |
| CTGATAGCTGCATTTATCAA+CGG | + | tig0018106:119199-119218 | None:intergenic | 35.0% | |
| ! | GTTGATAAATGCAGCTATCA+GGG | - | tig0018106:119198-119217 | Msa1364060:CDS | 35.0% |
| GCACAATGCAGTAAAACATA+TGG | + | tig0018106:119342-119361 | None:intergenic | 35.0% | |
| GTACAAACTCTGGTATTCTA+AGG | - | tig0018106:119395-119414 | Msa1364060:intron | 35.0% | |
| ! | AGTGGTATCCTTTTATTGAC+AGG | - | tig0018106:119460-119479 | Msa1364060:intron | 35.0% |
| ! | GTGGTATCCTTTTATTGACA+GGG | - | tig0018106:119461-119480 | Msa1364060:intron | 35.0% |
| ! | TTTGAAGCCCTGTCAATAAA+AGG | + | tig0018106:119471-119490 | None:intergenic | 35.0% |
| ! | TTTGAAACAGCTAACCAGTT+TGG | + | tig0018106:119524-119543 | None:intergenic | 35.0% |
| !! | CTTGAATCCATGTTTTGTTC+AGG | - | tig0018106:119732-119751 | Msa1364060:intron | 35.0% |
| GAAGAAATACTTCAGACTAG+AGG | - | tig0018106:119843-119862 | Msa1364060:intron | 35.0% | |
| ACTTCAGACTAGAGGTAAAT+AGG | - | tig0018106:119851-119870 | Msa1364060:intron | 35.0% | |
| GCAAAGAACAGTATAACTCA+TGG | + | tig0018106:120055-120074 | None:intergenic | 35.0% | |
| ! | CTACTTGTACCTTCAGTTTT+TGG | - | tig0018106:120178-120197 | Msa1364060:intron | 35.0% |
| AGAAATAGATGACGATGATC+TGG | - | tig0018106:120214-120233 | Msa1364060:intron | 35.0% | |
| ATATGAGGAGAAAGAGATAC+CGG | + | tig0018106:120435-120454 | None:intergenic | 35.0% | |
| TTCAAACGTCAACTTCTGAT+TGG | - | tig0018106:120466-120485 | Msa1364060:CDS | 35.0% | |
| AGGAACTGAAACAATGAAGA+AGG | + | tig0018106:120690-120709 | None:intergenic | 35.0% | |
| CTTCATTGTTTCAGTTCCTT+TGG | - | tig0018106:120691-120710 | Msa1364060:exon | 35.0% | |
| AGAAATAACTAAGTGGCCAA+AGG | + | tig0018106:120710-120729 | None:intergenic | 35.0% | |
| ! | GATAGATAGACCGGTTCTAA+CGG | + | tig0018106:117475-117494 | None:intergenic | 40.0% |
| CTTCTTGAAGATTGGAAACG+AGG | + | tig0018106:117685-117704 | None:intergenic | 40.0% | |
| !! | GAGAAGTGCTTCTTGAAGAT+TGG | + | tig0018106:117693-117712 | None:intergenic | 40.0% |
| ! | ATCATCGTTGGTGGAAGAAA+CGG | + | tig0018106:117759-117778 | None:intergenic | 40.0% |
| ATTAGGGTTATCATCGTTGG+TGG | + | tig0018106:117768-117787 | None:intergenic | 40.0% | |
| AGGATTAGGGTTATCATCGT+TGG | + | tig0018106:117771-117790 | None:intergenic | 40.0% | |
| TCATCGAATTCGATAGGGTT+AGG | + | tig0018106:117791-117810 | None:intergenic | 40.0% | |
| !! | TGTGAGCAAGATAATGGGTT+TGG | + | tig0018106:117816-117835 | None:intergenic | 40.0% |
| GCTGTTTGTGAGCAAGATAA+TGG | + | tig0018106:117822-117841 | None:intergenic | 40.0% | |
| CGCAAACATGGACATTGTAA+AGG | + | tig0018106:117901-117920 | None:intergenic | 40.0% | |
| !! | TGCTGAAATGGTGTTGCTTT+AGG | - | tig0018106:118031-118050 | Msa1364060:intron | 40.0% |
| !! | GCTGAAATGGTGTTGCTTTA+GGG | - | tig0018106:118032-118051 | Msa1364060:intron | 40.0% |
| GCTTGTTCTGCTCAAGTTAA+TGG | - | tig0018106:118102-118121 | Msa1364060:intron | 40.0% | |
| ACCTGAAATCTCAAAAGCAG+TGG | + | tig0018106:118130-118149 | None:intergenic | 40.0% | |
| TAATAATTCAGGGACTCCTG+CGG | - | tig0018106:118278-118297 | Msa1364060:intron | 40.0% | |
| !!! | TATCTGGAGCTTTGTTTTCG+TGG | - | tig0018106:118319-118338 | Msa1364060:intron | 40.0% |
| TAATTGTGTGTTTGGTCCTG+CGG | - | tig0018106:118387-118406 | Msa1364060:intron | 40.0% | |
| AAATCAACTCTTGTTACCGC+AGG | + | tig0018106:118406-118425 | None:intergenic | 40.0% | |
| ! | CAACTTGCTTTCACACATGA+AGG | + | tig0018106:118501-118520 | None:intergenic | 40.0% |
| CAGCACTATTAGTGTATGTG+TGG | + | tig0018106:118690-118709 | None:intergenic | 40.0% | |
| !!! | ACCTGGAGCATTTTAAAGCA+TGG | + | tig0018106:118964-118983 | None:intergenic | 40.0% |
| ! | CGTTGATAAATGCAGCTATC+AGG | - | tig0018106:119197-119216 | Msa1364060:CDS | 40.0% |
| TTGTTGCTCAAAGGTGATCT+CGG | + | tig0018106:119274-119293 | None:intergenic | 40.0% | |
| TTACAGACCTTGTTGCTCAA+AGG | + | tig0018106:119283-119302 | None:intergenic | 40.0% | |
| ! | TGCAAATGCTCTAGTCTTCT+AGG | - | tig0018106:119359-119378 | Msa1364060:CDS | 40.0% |
| !! | TTCTAAGGCGTTTGGCTAAT+TGG | - | tig0018106:119410-119429 | Msa1364060:intron | 40.0% |
| TCAATTGTACACTGATGCAG+TGG | - | tig0018106:119442-119461 | Msa1364060:intron | 40.0% | |
| AGAAATGACCAGTTGGATAG+CGG | + | tig0018106:119550-119569 | None:intergenic | 40.0% | |
| CTATCCAACTGGTCATTTCT+TGG | - | tig0018106:119550-119569 | Msa1364060:intron | 40.0% | |
| GGCTACGCAGAAAAAGAATT+TGG | - | tig0018106:119771-119790 | Msa1364060:intron | 40.0% | |
| TCAGACTAGAGGTAAATAGG+AGG | - | tig0018106:119854-119873 | Msa1364060:intron | 40.0% | |
| ! | GATTACAGAGCACTTGAAAG+TGG | - | tig0018106:120236-120255 | Msa1364060:CDS | 40.0% |
| TGAATCCGTCAGAATGAGAA+GGG | + | tig0018106:120378-120397 | None:intergenic | 40.0% | |
| ATGAATCCGTCAGAATGAGA+AGG | + | tig0018106:120379-120398 | None:intergenic | 40.0% | |
| TCTGCTCCATCTTTGCTTTA+AGG | + | tig0018106:120595-120614 | None:intergenic | 40.0% | |
| ATCTTGCTCACAAACAGCGA+TGG | - | tig0018106:117824-117843 | Msa1364060:three_prime_UTR | 45.0% | |
| TCAACTAGGTGTGTAAGACC+TGG | + | tig0018106:117860-117879 | None:intergenic | 45.0% | |
| GAAGAACGAGAGCTTCAACT+AGG | + | tig0018106:117874-117893 | None:intergenic | 45.0% | |
| ACGATTGAGGAACGCAAACA+TGG | + | tig0018106:117913-117932 | None:intergenic | 45.0% | |
| TGTTACGATTCGAGAAACCG+TGG | - | tig0018106:118077-118096 | Msa1364060:intron | 45.0% | |
| TTGAGCAGAACAAGCTTCCA+CGG | + | tig0018106:118097-118116 | None:intergenic | 45.0% | |
| !!! | GCCACTGCTTTTGAGATTTC+AGG | - | tig0018106:118126-118145 | Msa1364060:CDS | 45.0% |
| ! | TCCTGCGGATTGTGTTTCAT+TGG | - | tig0018106:118293-118312 | Msa1364060:intron | 45.0% |
| ! | TTCGTGGTCAAAGCCTGTTT+TGG | - | tig0018106:118335-118354 | Msa1364060:intron | 45.0% |
| ATTAATCGGGGATCAAGCTG+CGG | - | tig0018106:118756-118775 | Msa1364060:CDS | 45.0% | |
| !! | GCCATGCTTTAAAATGCTCC+AGG | - | tig0018106:118960-118979 | Msa1364060:intron | 45.0% |
| AAATGCTCCAGGTTCTACTC+TGG | - | tig0018106:118971-118990 | Msa1364060:intron | 45.0% | |
| AATGCTCCAGGTTCTACTCT+GGG | - | tig0018106:118972-118991 | Msa1364060:intron | 45.0% | |
| !! | GCTAGGGAGGCATTATTATG+CGG | - | tig0018106:119007-119026 | Msa1364060:intron | 45.0% |
| AGCTATCAGGGATGCTGAAA+AGG | - | tig0018106:119210-119229 | Msa1364060:intron | 45.0% | |
| GAGATCACCTTTGAGCAACA+AGG | - | tig0018106:119273-119292 | Msa1364060:intron | 45.0% | |
| !! | CTCTGGTATTCTAAGGCGTT+TGG | - | tig0018106:119402-119421 | Msa1364060:intron | 45.0% |
| AACAGCTAACCAGTTTGGAG+TGG | + | tig0018106:119519-119538 | None:intergenic | 45.0% | |
| TCAAATAGCCGCTATCCAAC+TGG | - | tig0018106:119539-119558 | Msa1364060:intron | 45.0% | |
| TTGGCCAAGAAATGACCAGT+TGG | + | tig0018106:119557-119576 | None:intergenic | 45.0% | |
| CATTTCTTGGCCAATCCACA+AGG | - | tig0018106:119563-119582 | Msa1364060:intron | 45.0% | |
| TAGGATACTTACAGCTGCAG+AGG | + | tig0018106:119627-119646 | None:intergenic | 45.0% | |
| ATTGAATCAACTGGAGCTGC+AGG | - | tig0018106:119799-119818 | Msa1364060:intron | 45.0% | |
| GACTAGAGGTAAATAGGAGG+TGG | - | tig0018106:119857-119876 | Msa1364060:intron | 45.0% | |
| TAGAGGTAAATAGGAGGTGG+AGG | - | tig0018106:119860-119879 | Msa1364060:intron | 45.0% | |
| GCTGCTTGTCCAAAAACTGA+AGG | + | tig0018106:120190-120209 | None:intergenic | 45.0% | |
| !! | TCAGTTTTTGGACAAGCAGC+AGG | - | tig0018106:120190-120209 | Msa1364060:intron | 45.0% |
| GAATGAGAAGGGGGGAAAAT+TGG | + | tig0018106:120367-120386 | None:intergenic | 45.0% | |
| AATCCGTCAGAATGAGAAGG+GGG | + | tig0018106:120376-120395 | None:intergenic | 45.0% | |
| GAATCCGTCAGAATGAGAAG+GGG | + | tig0018106:120377-120396 | None:intergenic | 45.0% | |
| ACGGATTCATGCATGTGCTT+TGG | - | tig0018106:120389-120408 | Msa1364060:intron | 45.0% | |
| !! | TGCATGTGCTTTGGAGAAAC+AGG | - | tig0018106:120398-120417 | Msa1364060:intron | 45.0% |
| TGGATTTCTGCTGTGATTCC+TGG | - | tig0018106:120486-120505 | Msa1364060:CDS | 45.0% | |
| ATTTCTGCTGTGATTCCTGG+TGG | - | tig0018106:120489-120508 | Msa1364060:CDS | 45.0% | |
| AAGCAAAGATGGAGCAGAAG+TGG | - | tig0018106:120597-120616 | Msa1364060:CDS | 45.0% | |
| TCCACGTACACCGTTAGAAC+CGG | - | tig0018106:117462-117481 | Msa1364060:three_prime_UTR | 50.0% | |
| TCGTTTCAAGATGATGCCCC+CGG | - | tig0018106:117658-117677 | Msa1364060:three_prime_UTR | 50.0% | |
| TGAAGATTGGAAACGAGGCC+CGG | + | tig0018106:117680-117699 | None:intergenic | 50.0% | |
| AGCGATGGAGTTGAATCACC+AGG | - | tig0018106:117839-117858 | Msa1364060:exon | 50.0% | |
| GCCAATGAAACACAATCCGC+AGG | + | tig0018106:118297-118316 | None:intergenic | 50.0% | |
| ATGCTCCAGGTTCTACTCTG+GGG | - | tig0018106:118973-118992 | Msa1364060:intron | 50.0% | |
| AACAACCCCAGAGTAGAACC+TGG | + | tig0018106:118981-119000 | None:intergenic | 50.0% | |
| !! | TTCTACTCTGGGGTTGTTGC+TGG | - | tig0018106:118983-119002 | Msa1364060:intron | 50.0% |
| TGTGGAGATCCACTCCAAAC+TGG | - | tig0018106:119507-119526 | Msa1364060:intron | 50.0% | |
| TTCTTGGCCAATCCACAAGG+TGG | - | tig0018106:119566-119585 | Msa1364060:intron | 50.0% | |
| GCTGTGCAAACTGAAGACCA+AGG | + | tig0018106:119592-119611 | None:intergenic | 50.0% | |
| GGTCTTCAGTTTGCACAGCT+TGG | - | tig0018106:119593-119612 | Msa1364060:intron | 50.0% | |
| !! | TTACAGCTGCAGAGGCATCT+CGG | + | tig0018106:119619-119638 | None:intergenic | 50.0% |
| AGGTAAATAGGAGGTGGAGG+AGG | - | tig0018106:119863-119882 | Msa1364060:intron | 50.0% | |
| TAAATAGGAGGTGGAGGAGG+AGG | - | tig0018106:119866-119885 | Msa1364060:intron | 50.0% | |
| TTCCCCCCTTCTCATTCTGA+CGG | - | tig0018106:120370-120389 | Msa1364060:intron | 50.0% | |
| ATCCGTCAGAATGAGAAGGG+GGG | + | tig0018106:120375-120394 | None:intergenic | 50.0% | |
| GAAACAGGTTGCAGTGACTC+CGG | - | tig0018106:120413-120432 | Msa1364060:intron | 50.0% | |
| ! | ACCGGTTCTAACGGTGTACG+TGG | + | tig0018106:117466-117485 | None:intergenic | 55.0% |
| CGTTTCAAGATGATGCCCCC+GGG | - | tig0018106:117659-117678 | Msa1364060:three_prime_UTR | 55.0% | |
| AAGATTGGAAACGAGGCCCG+GGG | + | tig0018106:117678-117697 | None:intergenic | 55.0% | |
| GAAGATTGGAAACGAGGCCC+GGG | + | tig0018106:117679-117698 | None:intergenic | 55.0% | |
| TGGGGTTGTTGCTGGAGCTA+GGG | - | tig0018106:118991-119010 | Msa1364060:intron | 55.0% | |
| ACCAAGGCCACCTTGTGGAT+TGG | + | tig0018106:119576-119595 | None:intergenic | 55.0% | |
| TGAAGACCAAGGCCACCTTG+TGG | + | tig0018106:119581-119600 | None:intergenic | 55.0% | |
| GCTGCGCCCTGAACAAAACA+TGG | + | tig0018106:119742-119761 | None:intergenic | 55.0% | |
| AGATTGGAAACGAGGCCCGG+GGG | + | tig0018106:117677-117696 | None:intergenic | 60.0% | |
| CTGGGGTTGTTGCTGGAGCT+AGG | - | tig0018106:118990-119009 | Msa1364060:intron | 60.0% | |
| GGTTGTTGCTGGAGCTAGGG+AGG | - | tig0018106:118994-119013 | Msa1364060:intron | 60.0% | |
| GCCAATCCACAAGGTGGCCT+TGG | - | tig0018106:119572-119591 | Msa1364060:intron | 60.0% | |
| TTGTTCAGGGCGCAGCTCGT+CGG | - | tig0018106:119746-119765 | Msa1364060:intron | 60.0% | |
| GTGGAGGAGGAGGATGAGGA+GGG | - | tig0018106:119876-119895 | Msa1364060:intron | 60.0% | |
| TGGAGGAGGAGGATGAGGAG+GGG | - | tig0018106:119877-119896 | Msa1364060:intron | 60.0% | |
| GGAGGTGGAGGAGGAGGATG+AGG | - | tig0018106:119872-119891 | Msa1364060:intron | 65.0% | |
| GGTGGAGGAGGAGGATGAGG+AGG | - | tig0018106:119875-119894 | Msa1364060:intron | 65.0% | |
| GGAGGAGGAGGATGAGGAGG+GGG | - | tig0018106:119878-119897 | Msa1364060:intron | 65.0% | |
| TCAGGGCGCAGCTCGTCGGT+TGG | - | tig0018106:119750-119769 | Msa1364060:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018106 | gene | 117455 | 120911 | 117455 | ID=Msa1364060;Name=Msa1364060 |
| tig0018106 | mRNA | 117455 | 120911 | 117455 | ID=Msa1364060-mRNA-1;Parent=Msa1364060;Name=Msa1364060-mRNA-1;_AED=0.11;_eAED=0.11;_QI=213|0.87|0.88|1|1|1|9|393|354 |
| tig0018106 | exon | 117455 | 117946 | 117455 | ID=Msa1364060-mRNA-1:exon:13887;Parent=Msa1364060-mRNA-1 |
| tig0018106 | exon | 118104 | 118172 | 118104 | ID=Msa1364060-mRNA-1:exon:13886;Parent=Msa1364060-mRNA-1 |
| tig0018106 | exon | 118502 | 118612 | 118502 | ID=Msa1364060-mRNA-1:exon:13885;Parent=Msa1364060-mRNA-1 |
| tig0018106 | exon | 118732 | 118884 | 118732 | ID=Msa1364060-mRNA-1:exon:13884;Parent=Msa1364060-mRNA-1 |
| tig0018106 | exon | 119072 | 119225 | 119072 | ID=Msa1364060-mRNA-1:exon:13883;Parent=Msa1364060-mRNA-1 |
| tig0018106 | exon | 119307 | 119384 | 119307 | ID=Msa1364060-mRNA-1:exon:13882;Parent=Msa1364060-mRNA-1 |
| tig0018106 | exon | 120035 | 120077 | 120035 | ID=Msa1364060-mRNA-1:exon:13881;Parent=Msa1364060-mRNA-1 |
| tig0018106 | exon | 120219 | 120313 | 120219 | ID=Msa1364060-mRNA-1:exon:13880;Parent=Msa1364060-mRNA-1 |
| tig0018106 | exon | 120436 | 120911 | 120436 | ID=Msa1364060-mRNA-1:exon:13879;Parent=Msa1364060-mRNA-1 |
| tig0018106 | five_prime_UTR | 120699 | 120911 | 120699 | ID=Msa1364060-mRNA-1:five_prime_utr;Parent=Msa1364060-mRNA-1 |
| tig0018106 | CDS | 120436 | 120698 | 120436 | ID=Msa1364060-mRNA-1:cds;Parent=Msa1364060-mRNA-1 |
| tig0018106 | CDS | 120219 | 120313 | 120219 | ID=Msa1364060-mRNA-1:cds;Parent=Msa1364060-mRNA-1 |
| tig0018106 | CDS | 120035 | 120077 | 120035 | ID=Msa1364060-mRNA-1:cds;Parent=Msa1364060-mRNA-1 |
| tig0018106 | CDS | 119307 | 119384 | 119307 | ID=Msa1364060-mRNA-1:cds;Parent=Msa1364060-mRNA-1 |
| tig0018106 | CDS | 119072 | 119225 | 119072 | ID=Msa1364060-mRNA-1:cds;Parent=Msa1364060-mRNA-1 |
| tig0018106 | CDS | 118732 | 118884 | 118732 | ID=Msa1364060-mRNA-1:cds;Parent=Msa1364060-mRNA-1 |
| tig0018106 | CDS | 118502 | 118612 | 118502 | ID=Msa1364060-mRNA-1:cds;Parent=Msa1364060-mRNA-1 |
| tig0018106 | CDS | 118104 | 118172 | 118104 | ID=Msa1364060-mRNA-1:cds;Parent=Msa1364060-mRNA-1 |
| tig0018106 | CDS | 117848 | 117946 | 117848 | ID=Msa1364060-mRNA-1:cds;Parent=Msa1364060-mRNA-1 |
| tig0018106 | three_prime_UTR | 117455 | 117847 | 117455 | ID=Msa1364060-mRNA-1:three_prime_utr;Parent=Msa1364060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
