Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273150 | AES63937.1 | 94.748 | 457 | 10 | 1 | 1 | 443 | 1 | 457 | 0.0 | 886 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273150 | sp|Q6X7J5|WOX8_ARATH | 36.538 | 416 | 161 | 11 | 1 | 405 | 1 | 324 | 4.77e-72 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0273150 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0193130 | Msa0273150 | 0.919151 | 6.441904e-87 | -8.615850e-47 |
| Msa0234360 | Msa0273150 | 0.920141 | 1.862612e-87 | -8.615850e-47 |
| Msa0273150 | Msa0308940 | 0.906667 | 1.161846e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273150 | MtrunA17_Chr2g0283141 | 94.748 | 457 | 10 | 1 | 1 | 443 | 1 | 457 | 0.0 | 886 |
| Msa0273150 | MtrunA17_Chr7g0223471 | 45.455 | 440 | 173 | 18 | 1 | 407 | 1 | 406 | 3.03e-89 | 277 |
| Msa0273150 | MtrunA17_Chr4g0046231 | 37.079 | 356 | 169 | 13 | 74 | 405 | 1 | 325 | 4.05e-43 | 154 |
| Msa0273150 | MtrunA17_Chr6g0460691 | 66.667 | 60 | 20 | 0 | 47 | 106 | 24 | 83 | 7.79e-23 | 98.2 |
| Msa0273150 | MtrunA17_Chr7g0254251 | 59.341 | 91 | 36 | 1 | 39 | 129 | 13 | 102 | 3.17e-22 | 95.9 |
| Msa0273150 | MtrunA17_Chr7g0254251 | 43.056 | 72 | 41 | 0 | 341 | 412 | 201 | 272 | 1.02e-13 | 71.2 |
| Msa0273150 | MtrunA17_Chr4g0046251 | 59.375 | 64 | 26 | 0 | 342 | 405 | 21 | 84 | 5.81e-17 | 75.9 |
| Msa0273150 | MtrunA17_Chr4g0043891 | 37.805 | 82 | 51 | 0 | 50 | 131 | 3 | 84 | 8.12e-17 | 79.7 |
| Msa0273150 | MtrunA17_Chr8g0392991 | 35.238 | 105 | 68 | 0 | 55 | 159 | 96 | 200 | 1.55e-15 | 77.8 |
| Msa0273150 | MtrunA17_Chr1g0212511 | 43.939 | 66 | 37 | 0 | 52 | 117 | 82 | 147 | 3.88e-15 | 75.1 |
| Msa0273150 | MtrunA17_Chr5g0436661 | 45.312 | 64 | 35 | 0 | 55 | 118 | 33 | 96 | 5.73e-15 | 73.2 |
| Msa0273150 | MtrunA17_Chr3g0144021 | 37.363 | 91 | 56 | 1 | 24 | 114 | 52 | 141 | 6.15e-15 | 73.6 |
| Msa0273150 | MtrunA17_Chr7g0238431 | 43.836 | 73 | 41 | 0 | 49 | 121 | 2 | 74 | 1.84e-14 | 72.0 |
| Msa0273150 | MtrunA17_Chr5g0405351 | 42.667 | 75 | 42 | 1 | 49 | 122 | 24 | 98 | 4.15e-14 | 72.8 |
| Msa0273150 | MtrunA17_Chr4g0031341 | 48.387 | 62 | 32 | 0 | 55 | 116 | 25 | 86 | 6.46e-14 | 71.6 |
| Msa0273150 | MtrunA17_Chr1g0153171 | 50.000 | 60 | 30 | 0 | 55 | 114 | 90 | 149 | 1.07e-13 | 70.5 |
| Msa0273150 | MtrunA17_Chr7g0222981 | 42.424 | 66 | 38 | 0 | 49 | 114 | 62 | 127 | 1.46e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273150 | AT5G45980.1 | 36.538 | 416 | 161 | 11 | 1 | 405 | 1 | 324 | 4.85e-73 | 233 |
| Msa0273150 | AT2G33880.1 | 85.714 | 126 | 14 | 3 | 1 | 124 | 1 | 124 | 5.49e-68 | 221 |
| Msa0273150 | AT2G33880.2 | 85.714 | 126 | 14 | 3 | 1 | 124 | 1 | 124 | 7.61e-68 | 221 |
| Msa0273150 | AT3G03660.1 | 64.286 | 70 | 24 | 1 | 38 | 106 | 15 | 84 | 1.80e-23 | 99.8 |
| Msa0273150 | AT3G03660.1 | 51.786 | 56 | 27 | 0 | 350 | 405 | 208 | 263 | 2.37e-12 | 67.4 |
| Msa0273150 | AT3G03660.2 | 64.286 | 70 | 24 | 1 | 38 | 106 | 15 | 84 | 3.33e-23 | 99.8 |
| Msa0273150 | AT3G03660.2 | 51.786 | 56 | 27 | 0 | 350 | 405 | 237 | 292 | 3.87e-12 | 67.4 |
| Msa0273150 | AT3G03660.4 | 64.286 | 70 | 24 | 1 | 38 | 106 | 15 | 84 | 4.97e-23 | 99.0 |
| Msa0273150 | AT3G03660.4 | 45.588 | 68 | 37 | 0 | 351 | 418 | 209 | 276 | 2.51e-12 | 67.8 |
| Msa0273150 | AT3G03660.3 | 64.286 | 70 | 24 | 1 | 38 | 106 | 15 | 84 | 7.53e-23 | 99.4 |
| Msa0273150 | AT3G03660.3 | 45.588 | 68 | 37 | 0 | 351 | 418 | 238 | 305 | 3.29e-12 | 67.8 |
| Msa0273150 | AT5G17810.3 | 67.797 | 59 | 18 | 1 | 49 | 106 | 14 | 72 | 4.84e-21 | 92.8 |
| Msa0273150 | AT5G17810.3 | 50.000 | 56 | 28 | 0 | 350 | 405 | 207 | 262 | 1.13e-12 | 68.6 |
| Msa0273150 | AT5G17810.1 | 67.797 | 59 | 18 | 1 | 49 | 106 | 14 | 72 | 5.22e-21 | 92.8 |
| Msa0273150 | AT5G17810.1 | 50.000 | 56 | 28 | 0 | 350 | 405 | 208 | 263 | 1.09e-12 | 68.6 |
| Msa0273150 | AT5G17810.2 | 67.797 | 59 | 18 | 1 | 49 | 106 | 14 | 72 | 5.22e-21 | 92.8 |
| Msa0273150 | AT5G17810.2 | 50.000 | 56 | 28 | 0 | 350 | 405 | 208 | 263 | 1.09e-12 | 68.6 |
| Msa0273150 | AT5G05770.1 | 34.066 | 91 | 60 | 0 | 55 | 145 | 29 | 119 | 8.74e-16 | 73.9 |
| Msa0273150 | AT3G18010.1 | 48.387 | 62 | 32 | 0 | 55 | 116 | 76 | 137 | 7.89e-15 | 75.9 |
| Msa0273150 | AT1G20700.2 | 48.333 | 60 | 31 | 0 | 55 | 114 | 33 | 92 | 1.34e-14 | 71.2 |
| Msa0273150 | AT2G28610.1 | 48.529 | 68 | 35 | 0 | 49 | 116 | 2 | 69 | 1.35e-14 | 73.6 |
| Msa0273150 | AT3G11260.1 | 45.312 | 64 | 35 | 0 | 55 | 118 | 24 | 87 | 1.82e-14 | 72.0 |
| Msa0273150 | AT1G20700.1 | 46.774 | 62 | 33 | 0 | 53 | 114 | 93 | 154 | 2.68e-14 | 72.0 |
| Msa0273150 | AT1G20700.3 | 46.774 | 62 | 33 | 0 | 53 | 114 | 93 | 154 | 2.92e-14 | 72.0 |
| Msa0273150 | AT1G46480.2 | 50.000 | 60 | 30 | 0 | 55 | 114 | 90 | 149 | 4.49e-14 | 70.9 |
| Msa0273150 | AT4G35550.1 | 45.161 | 62 | 34 | 0 | 53 | 114 | 97 | 158 | 1.20e-13 | 71.2 |
| Msa0273150 | AT1G46480.1 | 50.000 | 60 | 30 | 0 | 55 | 114 | 90 | 149 | 2.40e-13 | 70.1 |
| Msa0273150 | AT2G01500.1 | 50.909 | 55 | 27 | 0 | 55 | 109 | 61 | 115 | 7.19e-13 | 68.9 |
| Msa0273150 | AT5G46010.1 | 47.619 | 63 | 32 | 1 | 51 | 112 | 50 | 112 | 1.46e-12 | 64.7 |
| Msa0273150 | AT5G59340.1 | 43.333 | 60 | 34 | 0 | 55 | 114 | 14 | 73 | 1.74e-12 | 67.8 |
| Msa0273150 | AT2G17950.1 | 46.032 | 63 | 33 | 1 | 55 | 116 | 38 | 100 | 2.93e-12 | 67.4 |
Find 104 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATTCTGATTCTGATTC+TGG | 0.081403 | 2_3:-4676795 | None:intergenic |
| GAAATTTGAGGAAGTGAATT+AGG | 0.138466 | 2_3:-4676838 | None:intergenic |
| TGCTTCTTGATTTGCGGTTT+TGG | 0.159712 | 2_3:-4676729 | None:intergenic |
| TCTGATTCTTGTTCTGGTTT+TGG | 0.210118 | 2_3:-4676771 | None:intergenic |
| GTGGCCTTTGAGGTTGCTTC+TGG | 0.210381 | 2_3:+4678079 | Msa0273150:CDS |
| TCTGGTTCTGATTCTTGTTC+TGG | 0.215529 | 2_3:-4676777 | None:intergenic |
| ATTTATCATCATCATAATTA+TGG | 0.218372 | 2_3:+4676219 | Msa0273150:exon |
| CTTGAAGCTATCTTCAATTC+TGG | 0.223036 | 2_3:+4676613 | Msa0273150:CDS |
| TTTAATGTTCGTGCGGCATT+TGG | 0.234206 | 2_3:+4678106 | Msa0273150:CDS |
| ATGCGGATTTGTTCTGGTTT+TGG | 0.247339 | 2_3:-4676589 | None:intergenic |
| TTGGCAGGTATTAATTCTTT+TGG | 0.251759 | 2_3:-4676907 | None:intergenic |
| TTAATGTTCGTGCGGCATTT+GGG | 0.270781 | 2_3:+4678107 | Msa0273150:CDS |
| ATCTGTGCTGTTCTAAAGTA+TGG | 0.274072 | 2_3:+4678517 | Msa0273150:CDS |
| CCTTGTGATGTAACATTGTT+AGG | 0.298506 | 2_3:-4677120 | None:intergenic |
| TTTGGATTCCACCTTGGCTT+TGG | 0.309423 | 2_3:-4676571 | None:intergenic |
| CCATTGGTGATGAGTGTTGC+AGG | 0.323664 | 2_3:-4676284 | None:intergenic |
| TCAAGTATGCGGATTTGTTC+TGG | 0.334510 | 2_3:-4676595 | None:intergenic |
| AATGCCGCACGAACATTAAA+AGG | 0.340006 | 2_3:-4678103 | None:intergenic |
| GGCACAACATCATTGATGTT+AGG | 0.346091 | 2_3:-4676949 | None:intergenic |
| GCTGAAAATATGTTTGGTTT+TGG | 0.348978 | 2_3:-4676996 | None:intergenic |
| ATCTTCCTTATCTCTTCTCT+TGG | 0.351542 | 2_3:-4676649 | None:intergenic |
| CTGTTCTTGATCTTTCTTTG+AGG | 0.356529 | 2_3:-4677268 | None:intergenic |
| ACAGAAGCAGTTGGAGAATT+AGG | 0.358074 | 2_3:-4676970 | None:intergenic |
| TTTGAGGCTGAAAATATGTT+TGG | 0.371353 | 2_3:-4677002 | None:intergenic |
| TTCCACCTTGGCTTTGGCTC+AGG | 0.373630 | 2_3:-4676565 | None:intergenic |
| TTCCTTATCTCTTCTCTTGG+TGG | 0.377528 | 2_3:-4676646 | None:intergenic |
| AAATTTGAGGAAGTGAATTA+GGG | 0.386654 | 2_3:-4676837 | None:intergenic |
| CATCAATGATGTGGCCTTTG+AGG | 0.391103 | 2_3:+4678069 | Msa0273150:CDS |
| CCTTGCACTTGAGAAATGAT+AGG | 0.417012 | 2_3:-4677411 | None:intergenic |
| GTAGGATGTAAAACAGTAGT+AGG | 0.421080 | 2_3:-4677360 | None:intergenic |
| CCAGAATCAGAATCAGAATC+AGG | 0.428113 | 2_3:+4676795 | Msa0273150:CDS |
| TATGCTTGCTTCTTGATTTG+CGG | 0.428894 | 2_3:-4676735 | None:intergenic |
| GCACAACATCATTGATGTTA+GGG | 0.443675 | 2_3:-4676948 | None:intergenic |
| TTAGGGTTATTATTCAATAG+AGG | 0.446319 | 2_3:+4678456 | Msa0273150:intron |
| AGAGCACAGTTGCAAGAGTA+TGG | 0.448490 | 2_3:+4676673 | Msa0273150:CDS |
| TAGTGCAGTTACCAGTGTTA+TGG | 0.449318 | 2_3:-4677200 | None:intergenic |
| GGCTTAGACTTAAACATGCT+TGG | 0.459758 | 2_3:-4676262 | None:intergenic |
| TTACTTGTGGTGGTGGAAGA+AGG | 0.462598 | 2_3:-4677035 | None:intergenic |
| TTCTTCCCAGTGCAACATCA+TGG | 0.463536 | 2_3:+4677081 | Msa0273150:CDS |
| CTCAAAGAAAGATCAAGAAC+AGG | 0.467360 | 2_3:+4677269 | Msa0273150:CDS |
| AGATAATTACCTGAGGAGTA+AGG | 0.470017 | 2_3:-4676355 | None:intergenic |
| ATCTCAGGCATTGGTGAACC+AGG | 0.475607 | 2_3:+4678022 | Msa0273150:intron |
| GCTGTTCTTGTACATCAAAC+TGG | 0.484452 | 2_3:+4678136 | Msa0273150:CDS |
| GAAAATAACATGCACCATGC+TGG | 0.488247 | 2_3:-4678204 | None:intergenic |
| CCTAACAATGTTACATCACA+AGG | 0.488908 | 2_3:+4677120 | Msa0273150:CDS |
| CCAAGGGAAAATACTTTGGC+AGG | 0.496441 | 2_3:-4676922 | None:intergenic |
| CCTTGTCCATGATGTTGCAC+TGG | 0.500743 | 2_3:-4677087 | None:intergenic |
| TGCTGACCATGTGGTTGAGC+AGG | 0.506086 | 2_3:-4677174 | None:intergenic |
| GAAACCAAGGGAAAATACTT+TGG | 0.514758 | 2_3:-4676926 | None:intergenic |
| GATAATTACCTGAGGAGTAA+GGG | 0.515469 | 2_3:-4676354 | None:intergenic |
| CACAGAACCCCTTACTCCTC+AGG | 0.516334 | 2_3:+4676346 | Msa0273150:CDS |
| AGTGAAGAGTGACACCATAC+TGG | 0.516391 | 2_3:-4678177 | None:intergenic |
| TGTTCATGATCTCACTAAGC+AGG | 0.516785 | 2_3:-4677230 | None:intergenic |
| GTGATGGTGGAGGAAGTAGT+AGG | 0.517817 | 2_3:-4677378 | None:intergenic |
| GGTGAAGAGGCTATATAAGA+AGG | 0.523036 | 2_3:+4676092 | None:intergenic |
| TAATGTTCGTGCGGCATTTG+GGG | 0.529446 | 2_3:+4678108 | Msa0273150:CDS |
| AAGAAGAAAGTCTCAGTAGC+TGG | 0.533457 | 2_3:-4677063 | None:intergenic |
| GGTACAGTAGCAGAAATTTG+AGG | 0.535619 | 2_3:-4676850 | None:intergenic |
| GGTGCAGTTACTTGTGGTGG+TGG | 0.536505 | 2_3:-4677042 | None:intergenic |
| ATCCACCAAGAGAAGAGATA+AGG | 0.537259 | 2_3:+4676644 | Msa0273150:CDS |
| TTGCAAGAGTATGGTCAAGT+TGG | 0.545746 | 2_3:+4676682 | Msa0273150:CDS |
| TACTTGTGGTGGTGGAAGAA+GGG | 0.555078 | 2_3:-4677034 | None:intergenic |
| AGCTATCTTCAATTCTGGAA+TGG | 0.556620 | 2_3:+4676618 | Msa0273150:CDS |
| GCAAACAGATGTTCAGATGT+GGG | 0.556845 | 2_3:-4677323 | None:intergenic |
| GAGGAAGATGAAGAAGATGA+AGG | 0.560821 | 2_3:-4676871 | None:intergenic |
| CCTGTGTTAACAAACCAGTA+TGG | 0.574262 | 2_3:+4678163 | Msa0273150:CDS |
| AGGTGATTGAACAGTGATGG+TGG | 0.575194 | 2_3:-4677391 | None:intergenic |
| GGCAAACAGATGTTCAGATG+TGG | 0.578783 | 2_3:-4677324 | None:intergenic |
| AACAGTAGTAGGAGTTGTGG+CGG | 0.580421 | 2_3:-4677349 | None:intergenic |
| CTTGTCCATGATGTTGCACT+GGG | 0.582831 | 2_3:-4677086 | None:intergenic |
| CATTGATGTTAGGGAAACCA+AGG | 0.582855 | 2_3:-4676939 | None:intergenic |
| ACTCTTCACTCACTCCAGCA+TGG | 0.587267 | 2_3:+4678190 | Msa0273150:CDS |
| CATTGGTGATGAGTGTTGCA+GGG | 0.588949 | 2_3:-4676283 | None:intergenic |
| GTAGCTGGTGCAGTTACTTG+TGG | 0.590783 | 2_3:-4677048 | None:intergenic |
| AGTTGATGTCATGCTGCCAT+TGG | 0.593818 | 2_3:-4676300 | None:intergenic |
| GAAGTCCTGAGCCAAAGCCA+AGG | 0.598879 | 2_3:+4676560 | Msa0273150:CDS |
| AAACAGATGTTCAGATGTGG+GGG | 0.599793 | 2_3:-4677321 | None:intergenic |
| CCTATCATTTCTCAAGTGCA+AGG | 0.604894 | 2_3:+4677411 | Msa0273150:CDS |
| TGAAGATAGCTTCAAGTATG+CGG | 0.609197 | 2_3:-4676606 | None:intergenic |
| ATAATTACCTGAGGAGTAAG+GGG | 0.610710 | 2_3:-4676353 | None:intergenic |
| CAAACAGATGTTCAGATGTG+GGG | 0.614296 | 2_3:-4677322 | None:intergenic |
| TAAAACAGTAGTAGGAGTTG+TGG | 0.614312 | 2_3:-4677352 | None:intergenic |
| CCATACTGGTTTGTTAACAC+AGG | 0.617631 | 2_3:-4678163 | None:intergenic |
| GCTGGTGCAGTTACTTGTGG+TGG | 0.617972 | 2_3:-4677045 | None:intergenic |
| AGGTCCAGAAGCAACCTCAA+AGG | 0.623758 | 2_3:-4678083 | None:intergenic |
| GTAGTAGGAGTTGTGGCGGG+TGG | 0.627094 | 2_3:-4677345 | None:intergenic |
| ATGGTTCCTGCTCAACCACA+TGG | 0.630924 | 2_3:+4677168 | Msa0273150:CDS |
| TGGCTTCATCAAATAGACAC+TGG | 0.631121 | 2_3:+4676239 | Msa0273150:CDS |
| CCAGTGCAACATCATGGACA+AGG | 0.635853 | 2_3:+4677087 | Msa0273150:CDS |
| GATAGGTGATTGAACAGTGA+TGG | 0.637240 | 2_3:-4677394 | None:intergenic |
| ACAGTAGTAGGAGTTGTGGC+GGG | 0.646909 | 2_3:-4677348 | None:intergenic |
| GTCCTGAGCCAAAGCCAAGG+TGG | 0.648407 | 2_3:+4676563 | Msa0273150:CDS |
| CCTGCAACACTCATCACCAA+TGG | 0.655110 | 2_3:+4676284 | Msa0273150:CDS |
| ATTGATGTTAGGGAAACCAA+GGG | 0.665295 | 2_3:-4676938 | None:intergenic |
| CTAACAATGTTACATCACAA+GGG | 0.668058 | 2_3:+4677121 | Msa0273150:CDS |
| GGTCAGCAACACCATAACAC+TGG | 0.670176 | 2_3:+4677189 | Msa0273150:CDS |
| TTATGGTGTTGCTGACCATG+TGG | 0.673188 | 2_3:-4677183 | None:intergenic |
| AGTGAGATCATGAACAACCA+TGG | 0.690840 | 2_3:+4677237 | Msa0273150:CDS |
| AGTGGTGTTCATCAATGATG+TGG | 0.696660 | 2_3:+4678060 | Msa0273150:CDS |
| TGGTTGAGCAGGAACCATGT+TGG | 0.698137 | 2_3:-4677163 | None:intergenic |
| TCTTTGAGGAATTAACACCA+TGG | 0.698293 | 2_3:-4677254 | None:intergenic |
| TGATTGAACAGTGATGGTGG+AGG | 0.713068 | 2_3:-4677388 | None:intergenic |
| AACAGATGTTCAGATGTGGG+GGG | 0.713218 | 2_3:-4677320 | None:intergenic |
| AGGTGTTGCTGCAAAATCAG+TGG | 0.717993 | 2_3:+4678042 | Msa0273150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGAAACTAAATAATTT+GGG | - | chr2_3:4677529-4677548 | None:intergenic | 10.0% |
| !! | ATTTATCATCATCATAATTA+TGG | + | chr2_3:4676219-4676238 | Msa0273150:exon | 15.0% |
| !! | TAAAGAAACTAAATAATTTG+GGG | - | chr2_3:4677528-4677547 | None:intergenic | 15.0% |
| !! | GTTAAAGAAACTAAATAATT+TGG | - | chr2_3:4677530-4677549 | None:intergenic | 15.0% |
| !! | AAGTATATAGATGAAATAAT+AGG | - | chr2_3:4677753-4677772 | None:intergenic | 15.0% |
| !! | TATGAAAAATAAATTAGAGA+AGG | - | chr2_3:4678290-4678309 | None:intergenic | 15.0% |
| !! | TTGTTACAAATTAGACATTA+GGG | - | chr2_3:4676491-4676510 | None:intergenic | 20.0% |
| !! | AATTTAGAGATGAAAATATG+TGG | - | chr2_3:4677562-4677581 | None:intergenic | 20.0% |
| !!! | CATAGTTTTTGAGATAAAAA+TGG | + | chr2_3:4677805-4677824 | Msa0273150:intron | 20.0% |
| !!! | TAAAAATGGTAATGTATGTA+TGG | + | chr2_3:4677819-4677838 | Msa0273150:intron | 20.0% |
| !!! | TTTAGTATTAGTTTGACTTT+TGG | + | chr2_3:4677946-4677965 | Msa0273150:intron | 20.0% |
| !!! | TTAATGTATGGTGTTTTATT+TGG | + | chr2_3:4678360-4678379 | Msa0273150:intron | 20.0% |
| ! | AAAATGTAGATAATTACCTG+AGG | - | chr2_3:4676365-4676384 | None:intergenic | 25.0% |
| !! | CTATATTTTACGTGACATTA+GGG | - | chr2_3:4676461-4676480 | None:intergenic | 25.0% |
| !! | ACTATATTTTACGTGACATT+AGG | - | chr2_3:4676462-4676481 | None:intergenic | 25.0% |
| ! | CTTGTTACAAATTAGACATT+AGG | - | chr2_3:4676492-4676511 | None:intergenic | 25.0% |
| ! | AAATTTGAGGAAGTGAATTA+GGG | - | chr2_3:4676840-4676859 | None:intergenic | 25.0% |
| ! | ATCTCAAAAACTATGTTCTT+AGG | - | chr2_3:4677800-4677819 | None:intergenic | 25.0% |
| !!! | ATATTTTGTTTTGCAGATGT+AGG | + | chr2_3:4678309-4678328 | Msa0273150:intron | 25.0% |
| !!! | TATTTTGTTTTGCAGATGTA+GGG | + | chr2_3:4678310-4678329 | Msa0273150:intron | 25.0% |
| !!! | TACTATTGTGTTTGCTATTA+GGG | + | chr2_3:4678439-4678458 | Msa0273150:intron | 25.0% |
| ! | TTAGGGTTATTATTCAATAG+AGG | + | chr2_3:4678456-4678475 | Msa0273150:intron | 25.0% |
| !! | GCTATATAAGAAGGTTTTGT+TGG | + | chr2_3:4676101-4676120 | Msa0273150:five_prime_UTR | 30.0% |
| ! | AGACATTTTTCTTCTTCTTG+TGG | + | chr2_3:4676519-4676538 | Msa0273150:intron | 30.0% |
| TTTCTTCTTCTTGTGGAAAT+AGG | + | chr2_3:4676526-4676545 | Msa0273150:intron | 30.0% | |
| ! | GTGATGCTAATGTTTTCTAT+TGG | + | chr2_3:4676704-4676723 | Msa0273150:CDS | 30.0% |
| GAAATTTGAGGAAGTGAATT+AGG | - | chr2_3:4676841-4676860 | None:intergenic | 30.0% | |
| ! | TTGGCAGGTATTAATTCTTT+TGG | - | chr2_3:4676910-4676929 | None:intergenic | 30.0% |
| !! | GCTGAAAATATGTTTGGTTT+TGG | - | chr2_3:4676999-4677018 | None:intergenic | 30.0% |
| ! | TTTGAGGCTGAAAATATGTT+TGG | - | chr2_3:4677005-4677024 | None:intergenic | 30.0% |
| CTAACAATGTTACATCACAA+GGG | + | chr2_3:4677121-4677140 | Msa0273150:CDS | 30.0% | |
| !! | AACTTTTTCTGTAACTGCAT+AGG | - | chr2_3:4677466-4677485 | None:intergenic | 30.0% |
| ATAAACTAGTCAAGATCTTG+TGG | - | chr2_3:4677705-4677724 | None:intergenic | 30.0% | |
| ACTATGTTCTTAGGTTCTAT+AGG | - | chr2_3:4677791-4677810 | None:intergenic | 30.0% | |
| TATGGAAAAGAAGAGAAAGT+GGG | + | chr2_3:4677837-4677856 | Msa0273150:intron | 30.0% | |
| AGATTAATGTGAATAAGACG+TGG | + | chr2_3:4677865-4677884 | Msa0273150:intron | 30.0% | |
| !! | ACTTTTGGTAGCTATAGTTA+AGG | + | chr2_3:4677961-4677980 | Msa0273150:intron | 30.0% |
| !!! | ATTTTGTTTTGCAGATGTAG+GGG | + | chr2_3:4678311-4678330 | Msa0273150:intron | 30.0% |
| !! | AGTGATGAGGTTTTAATGTA+TGG | + | chr2_3:4678348-4678367 | Msa0273150:intron | 30.0% |
| !! | GTACTATTGTGTTTGCTATT+AGG | + | chr2_3:4678438-4678457 | Msa0273150:intron | 30.0% |
| ATAATTACCTGAGGAGTAAG+GGG | - | chr2_3:4676356-4676375 | None:intergenic | 35.0% | |
| GATAATTACCTGAGGAGTAA+GGG | - | chr2_3:4676357-4676376 | None:intergenic | 35.0% | |
| AGATAATTACCTGAGGAGTA+AGG | - | chr2_3:4676358-4676377 | None:intergenic | 35.0% | |
| TGAAGATAGCTTCAAGTATG+CGG | - | chr2_3:4676609-4676628 | None:intergenic | 35.0% | |
| CTTGAAGCTATCTTCAATTC+TGG | + | chr2_3:4676613-4676632 | Msa0273150:CDS | 35.0% | |
| ! | AGCTATCTTCAATTCTGGAA+TGG | + | chr2_3:4676618-4676637 | Msa0273150:CDS | 35.0% |
| ATCTTCCTTATCTCTTCTCT+TGG | - | chr2_3:4676652-4676671 | None:intergenic | 35.0% | |
| ! | TATGCTTGCTTCTTGATTTG+CGG | - | chr2_3:4676738-4676757 | None:intergenic | 35.0% |
| !!! | TCTGATTCTTGTTCTGGTTT+TGG | - | chr2_3:4676774-4676793 | None:intergenic | 35.0% |
| !!! | AGTGAATTAGGGTTTTGTTG+TGG | - | chr2_3:4676829-4676848 | None:intergenic | 35.0% |
| ! | GCAGGTATTAATTCTTTTGG+TGG | - | chr2_3:4676907-4676926 | None:intergenic | 35.0% |
| GAAACCAAGGGAAAATACTT+TGG | - | chr2_3:4676929-4676948 | None:intergenic | 35.0% | |
| ATTGATGTTAGGGAAACCAA+GGG | - | chr2_3:4676941-4676960 | None:intergenic | 35.0% | |
| GCACAACATCATTGATGTTA+GGG | - | chr2_3:4676951-4676970 | None:intergenic | 35.0% | |
| ! | AGAAGGGTAGTTACATTTTG+AGG | - | chr2_3:4677021-4677040 | None:intergenic | 35.0% |
| CCTTGTGATGTAACATTGTT+AGG | - | chr2_3:4677123-4677142 | None:intergenic | 35.0% | |
| CCTAACAATGTTACATCACA+AGG | + | chr2_3:4677120-4677139 | Msa0273150:CDS | 35.0% | |
| ! | CTTTTCTGAACTTTCCAACA+TGG | + | chr2_3:4677149-4677168 | Msa0273150:CDS | 35.0% |
| ! | TCTTTGAGGAATTAACACCA+TGG | - | chr2_3:4677257-4677276 | None:intergenic | 35.0% |
| CTGTTCTTGATCTTTCTTTG+AGG | - | chr2_3:4677271-4677290 | None:intergenic | 35.0% | |
| CTCAAAGAAAGATCAAGAAC+AGG | + | chr2_3:4677269-4677288 | Msa0273150:CDS | 35.0% | |
| TAAAACAGTAGTAGGAGTTG+TGG | - | chr2_3:4677355-4677374 | None:intergenic | 35.0% | |
| GTAGGATGTAAAACAGTAGT+AGG | - | chr2_3:4677363-4677382 | None:intergenic | 35.0% | |
| ATGTTCTTAGGTTCTATAGG+CGG | - | chr2_3:4677788-4677807 | None:intergenic | 35.0% | |
| GTATGGAAAAGAAGAGAAAG+TGG | + | chr2_3:4677836-4677855 | Msa0273150:intron | 35.0% | |
| ! | GTTAGTGTACCATGGTTTTT+GGG | + | chr2_3:4677887-4677906 | Msa0273150:intron | 35.0% |
| !! | GGCTCTATTGGCTTAAATAT+AGG | + | chr2_3:4677922-4677941 | Msa0273150:intron | 35.0% |
| GAAATGATTGAGTGTATCTC+AGG | + | chr2_3:4678007-4678026 | Msa0273150:intron | 35.0% | |
| !! | ATCTGTGCTGTTCTAAAGTA+TGG | + | chr2_3:4678517-4678536 | Msa0273150:CDS | 35.0% |
| !!! | AGAAGGTTTTGTTGGTTCTG+TGG | + | chr2_3:4676109-4676128 | Msa0273150:five_prime_UTR | 40.0% |
| !!! | GAAGGTTTTGTTGGTTCTGT+GGG | + | chr2_3:4676110-4676129 | Msa0273150:five_prime_UTR | 40.0% |
| TGGCTTCATCAAATAGACAC+TGG | + | chr2_3:4676239-4676258 | Msa0273150:CDS | 40.0% | |
| GGCTTAGACTTAAACATGCT+TGG | - | chr2_3:4676265-4676284 | None:intergenic | 40.0% | |
| !!! | ATGCGGATTTGTTCTGGTTT+TGG | - | chr2_3:4676592-4676611 | None:intergenic | 40.0% |
| ! | TCAAGTATGCGGATTTGTTC+TGG | - | chr2_3:4676598-4676617 | None:intergenic | 40.0% |
| ATCCACCAAGAGAAGAGATA+AGG | + | chr2_3:4676644-4676663 | Msa0273150:CDS | 40.0% | |
| TTCCTTATCTCTTCTCTTGG+TGG | - | chr2_3:4676649-4676668 | None:intergenic | 40.0% | |
| ! | TTGCAAGAGTATGGTCAAGT+TGG | + | chr2_3:4676682-4676701 | Msa0273150:CDS | 40.0% |
| !!! | TGCTTCTTGATTTGCGGTTT+TGG | - | chr2_3:4676732-4676751 | None:intergenic | 40.0% |
| !!! | TCTTGTTCTGGTTTTGGAGA+TGG | - | chr2_3:4676768-4676787 | None:intergenic | 40.0% |
| !! | TCTGGTTCTGATTCTTGTTC+TGG | - | chr2_3:4676780-4676799 | None:intergenic | 40.0% |
| CCTGATTCTGATTCTGATTC+TGG | - | chr2_3:4676798-4676817 | None:intergenic | 40.0% | |
| CCAGAATCAGAATCAGAATC+AGG | + | chr2_3:4676795-4676814 | Msa0273150:CDS | 40.0% | |
| GGTACAGTAGCAGAAATTTG+AGG | - | chr2_3:4676853-4676872 | None:intergenic | 40.0% | |
| GAGGAAGATGAAGAAGATGA+AGG | - | chr2_3:4676874-4676893 | None:intergenic | 40.0% | |
| ! | TTTTGGTGGAGATTTCTCAG+AGG | - | chr2_3:4676893-4676912 | None:intergenic | 40.0% |
| CATTGATGTTAGGGAAACCA+AGG | - | chr2_3:4676942-4676961 | None:intergenic | 40.0% | |
| GGCACAACATCATTGATGTT+AGG | - | chr2_3:4676952-4676971 | None:intergenic | 40.0% | |
| ACAGAAGCAGTTGGAGAATT+AGG | - | chr2_3:4676973-4676992 | None:intergenic | 40.0% | |
| !!! | TTTTGGTTCACAGAAGCAGT+TGG | - | chr2_3:4676982-4677001 | None:intergenic | 40.0% |
| AAGAAGAAAGTCTCAGTAGC+TGG | - | chr2_3:4677066-4677085 | None:intergenic | 40.0% | |
| TAGTGCAGTTACCAGTGTTA+TGG | - | chr2_3:4677203-4677222 | None:intergenic | 40.0% | |
| TGTTCATGATCTCACTAAGC+AGG | - | chr2_3:4677233-4677252 | None:intergenic | 40.0% | |
| AGTGAGATCATGAACAACCA+TGG | + | chr2_3:4677237-4677256 | Msa0273150:CDS | 40.0% | |
| AAACAGATGTTCAGATGTGG+GGG | - | chr2_3:4677324-4677343 | None:intergenic | 40.0% | |
| CAAACAGATGTTCAGATGTG+GGG | - | chr2_3:4677325-4677344 | None:intergenic | 40.0% | |
| GCAAACAGATGTTCAGATGT+GGG | - | chr2_3:4677326-4677345 | None:intergenic | 40.0% | |
| GATAGGTGATTGAACAGTGA+TGG | - | chr2_3:4677397-4677416 | None:intergenic | 40.0% | |
| CCTTGCACTTGAGAAATGAT+AGG | - | chr2_3:4677414-4677433 | None:intergenic | 40.0% | |
| CCTATCATTTCTCAAGTGCA+AGG | + | chr2_3:4677411-4677430 | Msa0273150:CDS | 40.0% | |
| ! | GGTTAGTGTACCATGGTTTT+TGG | + | chr2_3:4677886-4677905 | Msa0273150:intron | 40.0% |
| ATTGAGTGTATCTCAGGCAT+TGG | + | chr2_3:4678013-4678032 | Msa0273150:intron | 40.0% | |
| AGTGGTGTTCATCAATGATG+TGG | + | chr2_3:4678060-4678079 | Msa0273150:CDS | 40.0% | |
| ! | TGGACCTTTTAATGTTCGTG+CGG | + | chr2_3:4678099-4678118 | Msa0273150:CDS | 40.0% |
| AATGCCGCACGAACATTAAA+AGG | - | chr2_3:4678106-4678125 | None:intergenic | 40.0% | |
| TTTAATGTTCGTGCGGCATT+TGG | + | chr2_3:4678106-4678125 | Msa0273150:CDS | 40.0% | |
| TTAATGTTCGTGCGGCATTT+GGG | + | chr2_3:4678107-4678126 | Msa0273150:CDS | 40.0% | |
| GCTGTTCTTGTACATCAAAC+TGG | + | chr2_3:4678136-4678155 | Msa0273150:CDS | 40.0% | |
| !! | CCATACTGGTTTGTTAACAC+AGG | - | chr2_3:4678166-4678185 | None:intergenic | 40.0% |
| CCTGTGTTAACAAACCAGTA+TGG | + | chr2_3:4678163-4678182 | Msa0273150:CDS | 40.0% | |
| GAAAATAACATGCACCATGC+TGG | - | chr2_3:4678207-4678226 | None:intergenic | 40.0% | |
| AGATGTAGGGGAAAAAATGC+TGG | + | chr2_3:4678323-4678342 | Msa0273150:intron | 40.0% | |
| AAAAATGCTGGAGAGTGATG+AGG | + | chr2_3:4678335-4678354 | Msa0273150:intron | 40.0% | |
| !! | CATTGGTGATGAGTGTTGCA+GGG | - | chr2_3:4676286-4676305 | None:intergenic | 45.0% |
| ! | AGTTGATGTCATGCTGCCAT+TGG | - | chr2_3:4676303-4676322 | None:intergenic | 45.0% |
| TTTGGATTCCACCTTGGCTT+TGG | - | chr2_3:4676574-4676593 | None:intergenic | 45.0% | |
| !!! | TCTGGTTTTGGATTCCACCT+TGG | - | chr2_3:4676580-4676599 | None:intergenic | 45.0% |
| AGAGCACAGTTGCAAGAGTA+TGG | + | chr2_3:4676673-4676692 | Msa0273150:CDS | 45.0% | |
| CCAAGGGAAAATACTTTGGC+AGG | - | chr2_3:4676925-4676944 | None:intergenic | 45.0% | |
| !! | CCTGCCAAAGTATTTTCCCT+TGG | + | chr2_3:4676922-4676941 | Msa0273150:CDS | 45.0% |
| !! | TACTTGTGGTGGTGGAAGAA+GGG | - | chr2_3:4677037-4677056 | None:intergenic | 45.0% |
| !! | TTACTTGTGGTGGTGGAAGA+AGG | - | chr2_3:4677038-4677057 | None:intergenic | 45.0% |
| TTCTTCCCAGTGCAACATCA+TGG | + | chr2_3:4677081-4677100 | Msa0273150:CDS | 45.0% | |
| CTTGTCCATGATGTTGCACT+GGG | - | chr2_3:4677089-4677108 | None:intergenic | 45.0% | |
| !! | TTATGGTGTTGCTGACCATG+TGG | - | chr2_3:4677186-4677205 | None:intergenic | 45.0% |
| AACAGATGTTCAGATGTGGG+GGG | - | chr2_3:4677323-4677342 | None:intergenic | 45.0% | |
| GGCAAACAGATGTTCAGATG+TGG | - | chr2_3:4677327-4677346 | None:intergenic | 45.0% | |
| AACAGTAGTAGGAGTTGTGG+CGG | - | chr2_3:4677352-4677371 | None:intergenic | 45.0% | |
| !! | TGATTGAACAGTGATGGTGG+AGG | - | chr2_3:4677391-4677410 | None:intergenic | 45.0% |
| AGGTGATTGAACAGTGATGG+TGG | - | chr2_3:4677394-4677413 | None:intergenic | 45.0% | |
| AAGACGTGGTTAGTGTACCA+TGG | + | chr2_3:4677879-4677898 | Msa0273150:intron | 45.0% | |
| !! | ACTGATTTTGCAGCAACACC+TGG | - | chr2_3:4678043-4678062 | None:intergenic | 45.0% |
| !! | AGGTGTTGCTGCAAAATCAG+TGG | + | chr2_3:4678042-4678061 | Msa0273150:CDS | 45.0% |
| CATCAATGATGTGGCCTTTG+AGG | + | chr2_3:4678069-4678088 | Msa0273150:CDS | 45.0% | |
| TAATGTTCGTGCGGCATTTG+GGG | + | chr2_3:4678108-4678127 | Msa0273150:CDS | 45.0% | |
| AGTGAAGAGTGACACCATAC+TGG | - | chr2_3:4678180-4678199 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTATTTTTCTTTT+AGG | + | chr2_3:4677722-4677741 | Msa0273150:intron | 5.0% |
| !! | CCATTGGTGATGAGTGTTGC+AGG | - | chr2_3:4676287-4676306 | None:intergenic | 50.0% |
| CCTGCAACACTCATCACCAA+TGG | + | chr2_3:4676284-4676303 | Msa0273150:CDS | 50.0% | |
| GTAGCTGGTGCAGTTACTTG+TGG | - | chr2_3:4677051-4677070 | None:intergenic | 50.0% | |
| CCTTGTCCATGATGTTGCAC+TGG | - | chr2_3:4677090-4677109 | None:intergenic | 50.0% | |
| CCAGTGCAACATCATGGACA+AGG | + | chr2_3:4677087-4677106 | Msa0273150:CDS | 50.0% | |
| TGGTTGAGCAGGAACCATGT+TGG | - | chr2_3:4677166-4677185 | None:intergenic | 50.0% | |
| ATGGTTCCTGCTCAACCACA+TGG | + | chr2_3:4677168-4677187 | Msa0273150:CDS | 50.0% | |
| GGTCAGCAACACCATAACAC+TGG | + | chr2_3:4677189-4677208 | Msa0273150:CDS | 50.0% | |
| TGTTCAGATGTGGGGGGATT+TGG | - | chr2_3:4677317-4677336 | None:intergenic | 50.0% | |
| ACAGTAGTAGGAGTTGTGGC+GGG | - | chr2_3:4677351-4677370 | None:intergenic | 50.0% | |
| !! | GTGATGGTGGAGGAAGTAGT+AGG | - | chr2_3:4677381-4677400 | None:intergenic | 50.0% |
| CACACGTGACCCAAAAACCA+TGG | - | chr2_3:4677899-4677918 | None:intergenic | 50.0% | |
| !!! | GTTTTTGGGTCACGTGTGCA+TGG | + | chr2_3:4677901-4677920 | Msa0273150:intron | 50.0% |
| ! | TCACGTGTGCATGGCTCTAT+TGG | + | chr2_3:4677910-4677929 | Msa0273150:intron | 50.0% |
| !! | ATCTCAGGCATTGGTGAACC+AGG | + | chr2_3:4678022-4678041 | Msa0273150:intron | 50.0% |
| AGGTCCAGAAGCAACCTCAA+AGG | - | chr2_3:4678086-4678105 | None:intergenic | 50.0% | |
| ACTCTTCACTCACTCCAGCA+TGG | + | chr2_3:4678190-4678209 | Msa0273150:CDS | 50.0% | |
| CACAGAACCCCTTACTCCTC+AGG | + | chr2_3:4676346-4676365 | Msa0273150:CDS | 55.0% | |
| GAAGTCCTGAGCCAAAGCCA+AGG | + | chr2_3:4676560-4676579 | Msa0273150:CDS | 55.0% | |
| !! | TTCCACCTTGGCTTTGGCTC+AGG | - | chr2_3:4676568-4676587 | None:intergenic | 55.0% |
| GGTGCAGTTACTTGTGGTGG+TGG | - | chr2_3:4677045-4677064 | None:intergenic | 55.0% | |
| GCTGGTGCAGTTACTTGTGG+TGG | - | chr2_3:4677048-4677067 | None:intergenic | 55.0% | |
| TGCTGACCATGTGGTTGAGC+AGG | - | chr2_3:4677177-4677196 | None:intergenic | 55.0% | |
| !! | GTGGCCTTTGAGGTTGCTTC+TGG | + | chr2_3:4678079-4678098 | Msa0273150:CDS | 55.0% |
| GTCCTGAGCCAAAGCCAAGG+TGG | + | chr2_3:4676563-4676582 | Msa0273150:CDS | 60.0% | |
| ! | GTAGTAGGAGTTGTGGCGGG+TGG | - | chr2_3:4677348-4677367 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 4676101 | 4678576 | 4676101 | ID=Msa0273150;Name=Msa0273150 |
| chr2_3 | mRNA | 4676101 | 4678576 | 4676101 | ID=Msa0273150-mRNA-1;Parent=Msa0273150;Name=Msa0273150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=137|0.33|0.25|1|0.66|0.75|4|0|443 |
| chr2_3 | exon | 4676101 | 4676367 | 4676101 | ID=Msa0273150-mRNA-1:exon:2278;Parent=Msa0273150-mRNA-1 |
| chr2_3 | exon | 4676548 | 4677432 | 4676548 | ID=Msa0273150-mRNA-1:exon:2279;Parent=Msa0273150-mRNA-1 |
| chr2_3 | exon | 4678029 | 4678228 | 4678029 | ID=Msa0273150-mRNA-1:exon:2280;Parent=Msa0273150-mRNA-1 |
| chr2_3 | exon | 4678460 | 4678576 | 4678460 | ID=Msa0273150-mRNA-1:exon:2281;Parent=Msa0273150-mRNA-1 |
| chr2_3 | five_prime_UTR | 4676101 | 4676237 | 4676101 | ID=Msa0273150-mRNA-1:five_prime_utr;Parent=Msa0273150-mRNA-1 |
| chr2_3 | CDS | 4676238 | 4676367 | 4676238 | ID=Msa0273150-mRNA-1:cds;Parent=Msa0273150-mRNA-1 |
| chr2_3 | CDS | 4676548 | 4677432 | 4676548 | ID=Msa0273150-mRNA-1:cds;Parent=Msa0273150-mRNA-1 |
| chr2_3 | CDS | 4678029 | 4678228 | 4678029 | ID=Msa0273150-mRNA-1:cds;Parent=Msa0273150-mRNA-1 |
| chr2_3 | CDS | 4678460 | 4678576 | 4678460 | ID=Msa0273150-mRNA-1:cds;Parent=Msa0273150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
