Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308940 | AES63937.1 | 94.748 | 457 | 11 | 1 | 1 | 444 | 1 | 457 | 0.0 | 884 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308940 | sp|Q6X7J5|WOX8_ARATH | 36.538 | 416 | 161 | 11 | 1 | 405 | 1 | 324 | 5.01e-72 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0308940 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0193130 | Msa0308940 | 0.889727 | 1.869109e-73 | -8.615850e-47 |
| Msa0234360 | Msa0308940 | 0.969271 | 7.062875e-130 | -8.615850e-47 |
| Msa0273150 | Msa0308940 | 0.906667 | 1.161846e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308940 | MtrunA17_Chr2g0283141 | 94.748 | 457 | 11 | 1 | 1 | 444 | 1 | 457 | 0.0 | 884 |
| Msa0308940 | MtrunA17_Chr7g0223471 | 44.647 | 439 | 178 | 18 | 1 | 407 | 1 | 406 | 1.13e-88 | 275 |
| Msa0308940 | MtrunA17_Chr4g0046231 | 36.676 | 349 | 180 | 10 | 74 | 405 | 1 | 325 | 4.14e-43 | 154 |
| Msa0308940 | MtrunA17_Chr6g0460691 | 66.667 | 60 | 20 | 0 | 47 | 106 | 24 | 83 | 7.94e-23 | 98.2 |
| Msa0308940 | MtrunA17_Chr7g0254251 | 59.341 | 91 | 36 | 1 | 39 | 129 | 13 | 102 | 3.04e-22 | 95.9 |
| Msa0308940 | MtrunA17_Chr7g0254251 | 44.615 | 65 | 36 | 0 | 341 | 405 | 201 | 265 | 1.54e-13 | 70.9 |
| Msa0308940 | MtrunA17_Chr4g0046251 | 59.375 | 64 | 26 | 0 | 342 | 405 | 21 | 84 | 5.83e-17 | 75.9 |
| Msa0308940 | MtrunA17_Chr4g0043891 | 37.805 | 82 | 51 | 0 | 50 | 131 | 3 | 84 | 8.01e-17 | 80.1 |
| Msa0308940 | MtrunA17_Chr8g0392991 | 35.238 | 105 | 68 | 0 | 55 | 159 | 96 | 200 | 1.60e-15 | 77.8 |
| Msa0308940 | MtrunA17_Chr1g0212511 | 44.615 | 65 | 36 | 0 | 53 | 117 | 83 | 147 | 3.72e-15 | 75.5 |
| Msa0308940 | MtrunA17_Chr5g0436661 | 45.312 | 64 | 35 | 0 | 55 | 118 | 33 | 96 | 5.86e-15 | 73.2 |
| Msa0308940 | MtrunA17_Chr3g0144021 | 37.363 | 91 | 56 | 1 | 24 | 114 | 52 | 141 | 6.00e-15 | 73.6 |
| Msa0308940 | MtrunA17_Chr7g0238431 | 43.836 | 73 | 41 | 0 | 49 | 121 | 2 | 74 | 1.85e-14 | 72.0 |
| Msa0308940 | MtrunA17_Chr5g0405351 | 42.667 | 75 | 42 | 1 | 49 | 122 | 24 | 98 | 4.41e-14 | 72.8 |
| Msa0308940 | MtrunA17_Chr4g0031341 | 48.387 | 62 | 32 | 0 | 55 | 116 | 25 | 86 | 6.67e-14 | 71.6 |
| Msa0308940 | MtrunA17_Chr1g0153171 | 50.000 | 60 | 30 | 0 | 55 | 114 | 90 | 149 | 1.19e-13 | 70.5 |
| Msa0308940 | MtrunA17_Chr7g0222981 | 42.424 | 66 | 38 | 0 | 49 | 114 | 62 | 127 | 1.49e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308940 | AT5G45980.1 | 36.538 | 416 | 161 | 11 | 1 | 405 | 1 | 324 | 5.10e-73 | 233 |
| Msa0308940 | AT2G33880.1 | 85.714 | 126 | 14 | 3 | 1 | 124 | 1 | 124 | 4.81e-68 | 221 |
| Msa0308940 | AT2G33880.2 | 85.714 | 126 | 14 | 3 | 1 | 124 | 1 | 124 | 6.53e-68 | 221 |
| Msa0308940 | AT3G03660.1 | 64.286 | 70 | 24 | 1 | 38 | 106 | 15 | 84 | 1.89e-23 | 99.8 |
| Msa0308940 | AT3G03660.1 | 51.786 | 56 | 27 | 0 | 350 | 405 | 208 | 263 | 2.38e-12 | 67.4 |
| Msa0308940 | AT3G03660.2 | 64.286 | 70 | 24 | 1 | 38 | 106 | 15 | 84 | 3.08e-23 | 99.8 |
| Msa0308940 | AT3G03660.2 | 51.786 | 56 | 27 | 0 | 350 | 405 | 237 | 292 | 3.95e-12 | 67.4 |
| Msa0308940 | AT3G03660.4 | 64.286 | 70 | 24 | 1 | 38 | 106 | 15 | 84 | 4.83e-23 | 99.4 |
| Msa0308940 | AT3G03660.4 | 52.727 | 55 | 26 | 0 | 351 | 405 | 209 | 263 | 7.26e-12 | 66.6 |
| Msa0308940 | AT3G03660.3 | 64.286 | 70 | 24 | 1 | 38 | 106 | 15 | 84 | 7.10e-23 | 99.4 |
| Msa0308940 | AT3G03660.3 | 52.727 | 55 | 26 | 0 | 351 | 405 | 238 | 292 | 9.02e-12 | 66.6 |
| Msa0308940 | AT5G17810.3 | 67.797 | 59 | 18 | 1 | 49 | 106 | 14 | 72 | 5.02e-21 | 92.8 |
| Msa0308940 | AT5G17810.3 | 50.000 | 56 | 28 | 0 | 350 | 405 | 207 | 262 | 1.11e-12 | 68.6 |
| Msa0308940 | AT5G17810.1 | 67.797 | 59 | 18 | 1 | 49 | 106 | 14 | 72 | 5.06e-21 | 92.8 |
| Msa0308940 | AT5G17810.1 | 50.000 | 56 | 28 | 0 | 350 | 405 | 208 | 263 | 1.02e-12 | 68.6 |
| Msa0308940 | AT5G17810.2 | 67.797 | 59 | 18 | 1 | 49 | 106 | 14 | 72 | 5.06e-21 | 92.8 |
| Msa0308940 | AT5G17810.2 | 50.000 | 56 | 28 | 0 | 350 | 405 | 208 | 263 | 1.02e-12 | 68.6 |
| Msa0308940 | AT5G05770.1 | 34.066 | 91 | 60 | 0 | 55 | 145 | 29 | 119 | 8.35e-16 | 73.9 |
| Msa0308940 | AT3G18010.1 | 48.387 | 62 | 32 | 0 | 55 | 116 | 76 | 137 | 8.16e-15 | 75.9 |
| Msa0308940 | AT2G28610.1 | 48.529 | 68 | 35 | 0 | 49 | 116 | 2 | 69 | 1.28e-14 | 73.9 |
| Msa0308940 | AT1G20700.2 | 48.333 | 60 | 31 | 0 | 55 | 114 | 33 | 92 | 1.38e-14 | 71.2 |
| Msa0308940 | AT3G11260.1 | 45.312 | 64 | 35 | 0 | 55 | 118 | 24 | 87 | 1.76e-14 | 72.0 |
| Msa0308940 | AT1G20700.1 | 46.774 | 62 | 33 | 0 | 53 | 114 | 93 | 154 | 2.77e-14 | 72.0 |
| Msa0308940 | AT1G20700.3 | 48.333 | 60 | 31 | 0 | 55 | 114 | 95 | 154 | 2.96e-14 | 72.0 |
| Msa0308940 | AT1G46480.2 | 50.000 | 60 | 30 | 0 | 55 | 114 | 90 | 149 | 4.91e-14 | 70.9 |
| Msa0308940 | AT4G35550.1 | 45.161 | 62 | 34 | 0 | 53 | 114 | 97 | 158 | 1.16e-13 | 71.2 |
| Msa0308940 | AT1G46480.1 | 50.000 | 60 | 30 | 0 | 55 | 114 | 90 | 149 | 2.47e-13 | 70.1 |
| Msa0308940 | AT2G01500.1 | 50.909 | 55 | 27 | 0 | 55 | 109 | 61 | 115 | 7.29e-13 | 68.9 |
| Msa0308940 | AT5G46010.1 | 47.619 | 63 | 32 | 1 | 51 | 112 | 50 | 112 | 1.48e-12 | 64.7 |
| Msa0308940 | AT5G59340.1 | 43.333 | 60 | 34 | 0 | 55 | 114 | 14 | 73 | 1.71e-12 | 67.8 |
| Msa0308940 | AT2G17950.1 | 46.032 | 63 | 33 | 1 | 55 | 116 | 38 | 100 | 2.83e-12 | 67.8 |
Find 103 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATTCTGATTCTGATTC+TGG | 0.081403 | 2_4:-3387298 | None:intergenic |
| GAAATTTGAGGAAGTGAATT+AGG | 0.138466 | 2_4:-3387341 | None:intergenic |
| TGCTTCTTGATTTGCGGTTT+TGG | 0.159712 | 2_4:-3387232 | None:intergenic |
| TCTGATTCTTGTTCTGGTTT+TGG | 0.210118 | 2_4:-3387274 | None:intergenic |
| GTGGCCTTTGAGGTTGCTTC+TGG | 0.210381 | 2_4:+3388582 | Msa0308940:CDS |
| TCTGGTTCTGATTCTTGTTC+TGG | 0.215529 | 2_4:-3387280 | None:intergenic |
| ATTTATCATCATCATAATTA+TGG | 0.218372 | 2_4:+3386748 | Msa0308940:exon |
| CTTGAAGCTATCTTCAATTC+TGG | 0.223036 | 2_4:+3387116 | Msa0308940:CDS |
| TTTAATGTTCGTGCGGCATT+TGG | 0.234206 | 2_4:+3388609 | Msa0308940:CDS |
| ATGCGGATTTGTTCTGGTTT+TGG | 0.247339 | 2_4:-3387092 | None:intergenic |
| TTGGCAGGTATTAATTCTTT+TGG | 0.251759 | 2_4:-3387410 | None:intergenic |
| TTAATGTTCGTGCGGCATTT+GGG | 0.270781 | 2_4:+3388610 | Msa0308940:CDS |
| ATCTGTGCTGTTCTAAAGTA+TGG | 0.274072 | 2_4:+3389023 | Msa0308940:CDS |
| CCTTGTGATGTAACATTGTT+AGG | 0.298506 | 2_4:-3387623 | None:intergenic |
| TTTGGATTCCACCTTGGCTT+TGG | 0.309423 | 2_4:-3387074 | None:intergenic |
| CCATTGGTGATGAGTGTTGC+AGG | 0.323664 | 2_4:-3386813 | None:intergenic |
| TCAAGTATGCGGATTTGTTC+TGG | 0.334510 | 2_4:-3387098 | None:intergenic |
| AATGCCGCACGAACATTAAA+AGG | 0.340006 | 2_4:-3388606 | None:intergenic |
| GGCACAACATCATTGATGTT+AGG | 0.346091 | 2_4:-3387452 | None:intergenic |
| GCTGAAAATATGTTTGGTTT+TGG | 0.348978 | 2_4:-3387499 | None:intergenic |
| ATCTTCCTTATCTCTTCTCT+TGG | 0.351542 | 2_4:-3387152 | None:intergenic |
| CTGTTCTTGATCTTTCTTTG+AGG | 0.356529 | 2_4:-3387771 | None:intergenic |
| ACAGAAGCAGTTGGAGAATT+AGG | 0.358074 | 2_4:-3387473 | None:intergenic |
| TTTGAGGCTGAAAATATGTT+TGG | 0.371353 | 2_4:-3387505 | None:intergenic |
| TTCCACCTTGGCTTTGGCTC+AGG | 0.373630 | 2_4:-3387068 | None:intergenic |
| TTCCTTATCTCTTCTCTTGG+TGG | 0.377528 | 2_4:-3387149 | None:intergenic |
| AAATTTGAGGAAGTGAATTA+GGG | 0.386654 | 2_4:-3387340 | None:intergenic |
| CATCAATGATGTGGCCTTTG+AGG | 0.391103 | 2_4:+3388572 | Msa0308940:CDS |
| CCTTGCACTTGAGAAATGAT+AGG | 0.417012 | 2_4:-3387914 | None:intergenic |
| GTAGGATGTAAAACAGTAGT+AGG | 0.421080 | 2_4:-3387863 | None:intergenic |
| CCAGAATCAGAATCAGAATC+AGG | 0.428113 | 2_4:+3387298 | Msa0308940:CDS |
| TATGCTTGCTTCTTGATTTG+CGG | 0.428894 | 2_4:-3387238 | None:intergenic |
| GGGTTATTATTATTCAATAG+AGG | 0.442248 | 2_4:+3388962 | Msa0308940:intron |
| GCACAACATCATTGATGTTA+GGG | 0.443675 | 2_4:-3387451 | None:intergenic |
| AGAGCACAGTTGCAAGAGTA+TGG | 0.448490 | 2_4:+3387176 | Msa0308940:CDS |
| TAGTGCAATTACCAGTGTTA+TGG | 0.456754 | 2_4:-3387703 | None:intergenic |
| GGCTTAGACTTAAACATGCT+TGG | 0.459758 | 2_4:-3386791 | None:intergenic |
| TTACTTGTGGTGGTGGAAGA+AGG | 0.462598 | 2_4:-3387538 | None:intergenic |
| TTCTTCCCAGTGCAACATCA+TGG | 0.463536 | 2_4:+3387584 | Msa0308940:CDS |
| CTCAAAGAAAGATCAAGAAC+AGG | 0.467360 | 2_4:+3387772 | Msa0308940:CDS |
| AGATAATTACCTGAGGAGTA+AGG | 0.470017 | 2_4:-3386884 | None:intergenic |
| ATCTCAGGCATTGGTGAACC+AGG | 0.475607 | 2_4:+3388525 | Msa0308940:intron |
| GCTGTTCTTGTACATCAAAC+TGG | 0.484452 | 2_4:+3388639 | Msa0308940:CDS |
| GAAAATAACATGCACCATGC+TGG | 0.488247 | 2_4:-3388707 | None:intergenic |
| CCTAACAATGTTACATCACA+AGG | 0.488908 | 2_4:+3387623 | Msa0308940:CDS |
| CCAAGGGAAAATACTTTGGC+AGG | 0.496441 | 2_4:-3387425 | None:intergenic |
| CCTTGTCCATGATGTTGCAC+TGG | 0.500743 | 2_4:-3387590 | None:intergenic |
| GAAACCAAGGGAAAATACTT+TGG | 0.514758 | 2_4:-3387429 | None:intergenic |
| GATAATTACCTGAGGAGTAA+GGG | 0.515469 | 2_4:-3386883 | None:intergenic |
| CACAGAACCCCTTACTCCTC+AGG | 0.516334 | 2_4:+3386875 | Msa0308940:CDS |
| AGTGAAGAGTGACACCATAC+TGG | 0.516391 | 2_4:-3388680 | None:intergenic |
| TGTTCATGATCTCACTAAGC+AGG | 0.516785 | 2_4:-3387733 | None:intergenic |
| GTGATGGTGGAGGAAGTAGT+AGG | 0.517817 | 2_4:-3387881 | None:intergenic |
| GGTGAAGAGGCTATATAAGA+AGG | 0.523036 | 2_4:+3386621 | None:intergenic |
| TAATGTTCGTGCGGCATTTG+GGG | 0.529446 | 2_4:+3388611 | Msa0308940:CDS |
| AAGAAGAAAGTCTCAGTAGC+TGG | 0.533457 | 2_4:-3387566 | None:intergenic |
| GGTACAGTAGCAGAAATTTG+AGG | 0.535619 | 2_4:-3387353 | None:intergenic |
| GGTGCAGTTACTTGTGGTGG+TGG | 0.536505 | 2_4:-3387545 | None:intergenic |
| ATCCACCAAGAGAAGAGATA+AGG | 0.537259 | 2_4:+3387147 | Msa0308940:CDS |
| TTGCAAGAGTATGGTCAAGT+TGG | 0.545746 | 2_4:+3387185 | Msa0308940:CDS |
| TACTTGTGGTGGTGGAAGAA+GGG | 0.555078 | 2_4:-3387537 | None:intergenic |
| AGCTATCTTCAATTCTGGAA+TGG | 0.556620 | 2_4:+3387121 | Msa0308940:CDS |
| GCAAACAGATGTTCAGATGT+GGG | 0.556845 | 2_4:-3387826 | None:intergenic |
| GAGGAAGATGAAGAAGATGA+AGG | 0.560821 | 2_4:-3387374 | None:intergenic |
| CCTGTGTTAACAAACCAGTA+TGG | 0.574262 | 2_4:+3388666 | Msa0308940:CDS |
| AGGTGATTGAACAGTGATGG+TGG | 0.575194 | 2_4:-3387894 | None:intergenic |
| GGCAAACAGATGTTCAGATG+TGG | 0.578783 | 2_4:-3387827 | None:intergenic |
| AACAGTAGTAGGAGTTGTGG+CGG | 0.580421 | 2_4:-3387852 | None:intergenic |
| CTTGTCCATGATGTTGCACT+GGG | 0.582831 | 2_4:-3387589 | None:intergenic |
| CATTGATGTTAGGGAAACCA+AGG | 0.582855 | 2_4:-3387442 | None:intergenic |
| ACTCTTCACTCACTCCAGCA+TGG | 0.587267 | 2_4:+3388693 | Msa0308940:CDS |
| CATTGGTGATGAGTGTTGCA+GGG | 0.588949 | 2_4:-3386812 | None:intergenic |
| GTAGCTGGTGCAGTTACTTG+TGG | 0.590783 | 2_4:-3387551 | None:intergenic |
| AGTTGATGTCATGCTGCCAT+TGG | 0.593818 | 2_4:-3386829 | None:intergenic |
| GAAGTCCTGAGCCAAAGCCA+AGG | 0.598879 | 2_4:+3387063 | Msa0308940:CDS |
| AAACAGATGTTCAGATGTGG+GGG | 0.599793 | 2_4:-3387824 | None:intergenic |
| CCTATCATTTCTCAAGTGCA+AGG | 0.604894 | 2_4:+3387914 | Msa0308940:CDS |
| TGAAGATAGCTTCAAGTATG+CGG | 0.609197 | 2_4:-3387109 | None:intergenic |
| ATAATTACCTGAGGAGTAAG+GGG | 0.610710 | 2_4:-3386882 | None:intergenic |
| TGCTGACCATGTGATTGAGC+AGG | 0.611105 | 2_4:-3387677 | None:intergenic |
| CAAACAGATGTTCAGATGTG+GGG | 0.614296 | 2_4:-3387825 | None:intergenic |
| TAAAACAGTAGTAGGAGTTG+TGG | 0.614312 | 2_4:-3387855 | None:intergenic |
| CCATACTGGTTTGTTAACAC+AGG | 0.617631 | 2_4:-3388666 | None:intergenic |
| GCTGGTGCAGTTACTTGTGG+TGG | 0.617972 | 2_4:-3387548 | None:intergenic |
| AGGTCCAGAAGCAACCTCAA+AGG | 0.623758 | 2_4:-3388586 | None:intergenic |
| ATGGTTCCTGCTCAATCACA+TGG | 0.625439 | 2_4:+3387671 | Msa0308940:CDS |
| GTAGTAGGAGTTGTGGCGGG+TGG | 0.627094 | 2_4:-3387848 | None:intergenic |
| TGGCTTCATCAAATAGACAC+TGG | 0.631121 | 2_4:+3386768 | Msa0308940:CDS |
| CCAGTGCAACATCATGGACA+AGG | 0.635853 | 2_4:+3387590 | Msa0308940:CDS |
| GATAGGTGATTGAACAGTGA+TGG | 0.637240 | 2_4:-3387897 | None:intergenic |
| ACAGTAGTAGGAGTTGTGGC+GGG | 0.646909 | 2_4:-3387851 | None:intergenic |
| GTCCTGAGCCAAAGCCAAGG+TGG | 0.648407 | 2_4:+3387066 | Msa0308940:CDS |
| CCTGCAACACTCATCACCAA+TGG | 0.655110 | 2_4:+3386813 | Msa0308940:CDS |
| TGATTGAGCAGGAACCATGT+TGG | 0.662612 | 2_4:-3387666 | None:intergenic |
| ATTGATGTTAGGGAAACCAA+GGG | 0.665295 | 2_4:-3387441 | None:intergenic |
| CTAACAATGTTACATCACAA+GGG | 0.668058 | 2_4:+3387624 | Msa0308940:CDS |
| GGTCAGCAACACCATAACAC+TGG | 0.670176 | 2_4:+3387692 | Msa0308940:CDS |
| AGTGAGATCATGAACAACCA+TGG | 0.690840 | 2_4:+3387740 | Msa0308940:CDS |
| AGTGGTGTTCATCAATGATG+TGG | 0.696660 | 2_4:+3388563 | Msa0308940:CDS |
| TCTTTGAGGAATTAACACCA+TGG | 0.698293 | 2_4:-3387757 | None:intergenic |
| TGATTGAACAGTGATGGTGG+AGG | 0.713068 | 2_4:-3387891 | None:intergenic |
| AACAGATGTTCAGATGTGGG+GGG | 0.713218 | 2_4:-3387823 | None:intergenic |
| AGGTGTTGCTGCAAAATCAG+TGG | 0.717993 | 2_4:+3388545 | Msa0308940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGAAACTAAATAATTT+GGG | - | chr2_4:3388032-3388051 | None:intergenic | 10.0% |
| !! | TTAAAGAAACTAAATAATTT+GGG | - | chr2_4:3388032-3388051 | None:intergenic | 10.0% |
| !! | ATTTATCATCATCATAATTA+TGG | + | chr2_4:3386748-3386767 | Msa0308940:exon | 15.0% |
| !!! | ATTTTTTTTCTTTTTCTTTG+TGG | + | chr2_4:3387022-3387041 | Msa0308940:intron | 15.0% |
| !! | TAAAGAAACTAAATAATTTG+GGG | - | chr2_4:3388031-3388050 | None:intergenic | 15.0% |
| !! | GTTAAAGAAACTAAATAATT+TGG | - | chr2_4:3388033-3388052 | None:intergenic | 15.0% |
| !! | AAGTATATAGATGAAATAAT+AGG | - | chr2_4:3388256-3388275 | None:intergenic | 15.0% |
| !! | TATGAAAAATAAATTAGAGA+AGG | - | chr2_4:3388793-3388812 | None:intergenic | 15.0% |
| !! | ATTTATCATCATCATAATTA+TGG | + | chr2_4:3386748-3386767 | Msa0308940:exon | 15.0% |
| !!! | ATTTTTTTTCTTTTTCTTTG+TGG | + | chr2_4:3387022-3387041 | Msa0308940:intron | 15.0% |
| !! | TAAAGAAACTAAATAATTTG+GGG | - | chr2_4:3388031-3388050 | None:intergenic | 15.0% |
| !! | GTTAAAGAAACTAAATAATT+TGG | - | chr2_4:3388033-3388052 | None:intergenic | 15.0% |
| !! | AAGTATATAGATGAAATAAT+AGG | - | chr2_4:3388256-3388275 | None:intergenic | 15.0% |
| !! | TATGAAAAATAAATTAGAGA+AGG | - | chr2_4:3388793-3388812 | None:intergenic | 15.0% |
| !! | TTGTTACAAATTAGACATTA+GGG | - | chr2_4:3386990-3387009 | None:intergenic | 20.0% |
| !! | AATTTAGAGATGAAAATATG+TGG | - | chr2_4:3388065-3388084 | None:intergenic | 20.0% |
| !!! | CATAGTTTTTGAGATAAAAA+TGG | + | chr2_4:3388308-3388327 | Msa0308940:intron | 20.0% |
| !!! | TAAAAATGGTAATGTATGTA+TGG | + | chr2_4:3388322-3388341 | Msa0308940:intron | 20.0% |
| !!! | TTTAGTATTAGTTTGACTTT+TGG | + | chr2_4:3388449-3388468 | Msa0308940:intron | 20.0% |
| !!! | TTAATGTATGGTGTTTTATT+TGG | + | chr2_4:3388863-3388882 | Msa0308940:intron | 20.0% |
| !! | TTGTTACAAATTAGACATTA+GGG | - | chr2_4:3386990-3387009 | None:intergenic | 20.0% |
| !! | AATTTAGAGATGAAAATATG+TGG | - | chr2_4:3388065-3388084 | None:intergenic | 20.0% |
| !!! | CATAGTTTTTGAGATAAAAA+TGG | + | chr2_4:3388308-3388327 | Msa0308940:intron | 20.0% |
| !!! | TAAAAATGGTAATGTATGTA+TGG | + | chr2_4:3388322-3388341 | Msa0308940:intron | 20.0% |
| !!! | TTTAGTATTAGTTTGACTTT+TGG | + | chr2_4:3388449-3388468 | Msa0308940:intron | 20.0% |
| !!! | TTAATGTATGGTGTTTTATT+TGG | + | chr2_4:3388863-3388882 | Msa0308940:intron | 20.0% |
| ! | AAAATGTAGATAATTACCTG+AGG | - | chr2_4:3386894-3386913 | None:intergenic | 25.0% |
| ! | CTTGTTACAAATTAGACATT+AGG | - | chr2_4:3386991-3387010 | None:intergenic | 25.0% |
| !! | TTCTTTTTCTTTGTGGAAAT+AGG | + | chr2_4:3387029-3387048 | Msa0308940:intron | 25.0% |
| ! | AAATTTGAGGAAGTGAATTA+GGG | - | chr2_4:3387343-3387362 | None:intergenic | 25.0% |
| ! | ATCTCAAAAACTATGTTCTT+AGG | - | chr2_4:3388303-3388322 | None:intergenic | 25.0% |
| !!! | ATATTTTGTTTTGCAGATGT+AGG | + | chr2_4:3388812-3388831 | Msa0308940:intron | 25.0% |
| !!! | TATTTTGTTTTGCAGATGTA+GGG | + | chr2_4:3388813-3388832 | Msa0308940:intron | 25.0% |
| !!! | TACTATTGTGTTTGCTATTA+GGG | + | chr2_4:3388942-3388961 | Msa0308940:intron | 25.0% |
| ! | GGGTTATTATTATTCAATAG+AGG | + | chr2_4:3388962-3388981 | Msa0308940:intron | 25.0% |
| ! | AAAATGTAGATAATTACCTG+AGG | - | chr2_4:3386894-3386913 | None:intergenic | 25.0% |
| ! | CTTGTTACAAATTAGACATT+AGG | - | chr2_4:3386991-3387010 | None:intergenic | 25.0% |
| !! | TTCTTTTTCTTTGTGGAAAT+AGG | + | chr2_4:3387029-3387048 | Msa0308940:intron | 25.0% |
| ! | AAATTTGAGGAAGTGAATTA+GGG | - | chr2_4:3387343-3387362 | None:intergenic | 25.0% |
| ! | ATCTCAAAAACTATGTTCTT+AGG | - | chr2_4:3388303-3388322 | None:intergenic | 25.0% |
| !!! | ATATTTTGTTTTGCAGATGT+AGG | + | chr2_4:3388812-3388831 | Msa0308940:intron | 25.0% |
| !!! | TATTTTGTTTTGCAGATGTA+GGG | + | chr2_4:3388813-3388832 | Msa0308940:intron | 25.0% |
| !!! | TACTATTGTGTTTGCTATTA+GGG | + | chr2_4:3388942-3388961 | Msa0308940:intron | 25.0% |
| ! | GGGTTATTATTATTCAATAG+AGG | + | chr2_4:3388962-3388981 | Msa0308940:intron | 25.0% |
| !! | GCTATATAAGAAGGTTTTGT+TGG | + | chr2_4:3386630-3386649 | Msa0308940:five_prime_UTR | 30.0% |
| ! | GTGATGCTAATGTTTTCTAT+TGG | + | chr2_4:3387207-3387226 | Msa0308940:CDS | 30.0% |
| GAAATTTGAGGAAGTGAATT+AGG | - | chr2_4:3387344-3387363 | None:intergenic | 30.0% | |
| ! | TTGGCAGGTATTAATTCTTT+TGG | - | chr2_4:3387413-3387432 | None:intergenic | 30.0% |
| !! | GCTGAAAATATGTTTGGTTT+TGG | - | chr2_4:3387502-3387521 | None:intergenic | 30.0% |
| ! | TTTGAGGCTGAAAATATGTT+TGG | - | chr2_4:3387508-3387527 | None:intergenic | 30.0% |
| CTAACAATGTTACATCACAA+GGG | + | chr2_4:3387624-3387643 | Msa0308940:CDS | 30.0% | |
| ATAAACTAGTCAAGATCTTG+TGG | - | chr2_4:3388208-3388227 | None:intergenic | 30.0% | |
| ACTATGTTCTTAGGTTCTAT+AGG | - | chr2_4:3388294-3388313 | None:intergenic | 30.0% | |
| TATGGAAAAGAAGAGAAAGT+GGG | + | chr2_4:3388340-3388359 | Msa0308940:intron | 30.0% | |
| AGATTAATGTGAATAAGACG+TGG | + | chr2_4:3388368-3388387 | Msa0308940:intron | 30.0% | |
| !! | ACTTTTGGTAGCTATAGTTA+AGG | + | chr2_4:3388464-3388483 | Msa0308940:intron | 30.0% |
| !!! | ATTTTGTTTTGCAGATGTAG+GGG | + | chr2_4:3388814-3388833 | Msa0308940:intron | 30.0% |
| !! | AGTGATGAGGTTTTAATGTA+TGG | + | chr2_4:3388851-3388870 | Msa0308940:intron | 30.0% |
| !! | GTACTATTGTGTTTGCTATT+AGG | + | chr2_4:3388941-3388960 | Msa0308940:intron | 30.0% |
| !! | GCTATATAAGAAGGTTTTGT+TGG | + | chr2_4:3386630-3386649 | Msa0308940:five_prime_UTR | 30.0% |
| ! | GTGATGCTAATGTTTTCTAT+TGG | + | chr2_4:3387207-3387226 | Msa0308940:CDS | 30.0% |
| GAAATTTGAGGAAGTGAATT+AGG | - | chr2_4:3387344-3387363 | None:intergenic | 30.0% | |
| ! | TTGGCAGGTATTAATTCTTT+TGG | - | chr2_4:3387413-3387432 | None:intergenic | 30.0% |
| !! | GCTGAAAATATGTTTGGTTT+TGG | - | chr2_4:3387502-3387521 | None:intergenic | 30.0% |
| ! | TTTGAGGCTGAAAATATGTT+TGG | - | chr2_4:3387508-3387527 | None:intergenic | 30.0% |
| CTAACAATGTTACATCACAA+GGG | + | chr2_4:3387624-3387643 | Msa0308940:CDS | 30.0% | |
| ATAAACTAGTCAAGATCTTG+TGG | - | chr2_4:3388208-3388227 | None:intergenic | 30.0% | |
| ACTATGTTCTTAGGTTCTAT+AGG | - | chr2_4:3388294-3388313 | None:intergenic | 30.0% | |
| TATGGAAAAGAAGAGAAAGT+GGG | + | chr2_4:3388340-3388359 | Msa0308940:intron | 30.0% | |
| AGATTAATGTGAATAAGACG+TGG | + | chr2_4:3388368-3388387 | Msa0308940:intron | 30.0% | |
| !! | ACTTTTGGTAGCTATAGTTA+AGG | + | chr2_4:3388464-3388483 | Msa0308940:intron | 30.0% |
| !!! | ATTTTGTTTTGCAGATGTAG+GGG | + | chr2_4:3388814-3388833 | Msa0308940:intron | 30.0% |
| !! | AGTGATGAGGTTTTAATGTA+TGG | + | chr2_4:3388851-3388870 | Msa0308940:intron | 30.0% |
| !! | GTACTATTGTGTTTGCTATT+AGG | + | chr2_4:3388941-3388960 | Msa0308940:intron | 30.0% |
| ATAATTACCTGAGGAGTAAG+GGG | - | chr2_4:3386885-3386904 | None:intergenic | 35.0% | |
| GATAATTACCTGAGGAGTAA+GGG | - | chr2_4:3386886-3386905 | None:intergenic | 35.0% | |
| AGATAATTACCTGAGGAGTA+AGG | - | chr2_4:3386887-3386906 | None:intergenic | 35.0% | |
| TGAAGATAGCTTCAAGTATG+CGG | - | chr2_4:3387112-3387131 | None:intergenic | 35.0% | |
| CTTGAAGCTATCTTCAATTC+TGG | + | chr2_4:3387116-3387135 | Msa0308940:CDS | 35.0% | |
| ! | AGCTATCTTCAATTCTGGAA+TGG | + | chr2_4:3387121-3387140 | Msa0308940:CDS | 35.0% |
| ATCTTCCTTATCTCTTCTCT+TGG | - | chr2_4:3387155-3387174 | None:intergenic | 35.0% | |
| ! | TATGCTTGCTTCTTGATTTG+CGG | - | chr2_4:3387241-3387260 | None:intergenic | 35.0% |
| !!! | TCTGATTCTTGTTCTGGTTT+TGG | - | chr2_4:3387277-3387296 | None:intergenic | 35.0% |
| !!! | AGTGAATTAGGGTTTTGTTG+TGG | - | chr2_4:3387332-3387351 | None:intergenic | 35.0% |
| ! | GCAGGTATTAATTCTTTTGG+TGG | - | chr2_4:3387410-3387429 | None:intergenic | 35.0% |
| GAAACCAAGGGAAAATACTT+TGG | - | chr2_4:3387432-3387451 | None:intergenic | 35.0% | |
| ATTGATGTTAGGGAAACCAA+GGG | - | chr2_4:3387444-3387463 | None:intergenic | 35.0% | |
| GCACAACATCATTGATGTTA+GGG | - | chr2_4:3387454-3387473 | None:intergenic | 35.0% | |
| ! | AGAAGGGTAGTTACATTTTG+AGG | - | chr2_4:3387524-3387543 | None:intergenic | 35.0% |
| CCTTGTGATGTAACATTGTT+AGG | - | chr2_4:3387626-3387645 | None:intergenic | 35.0% | |
| CCTAACAATGTTACATCACA+AGG | + | chr2_4:3387623-3387642 | Msa0308940:CDS | 35.0% | |
| ! | CTTTTCTGAACTTTCCAACA+TGG | + | chr2_4:3387652-3387671 | Msa0308940:CDS | 35.0% |
| TAGTGCAATTACCAGTGTTA+TGG | - | chr2_4:3387706-3387725 | None:intergenic | 35.0% | |
| ! | TCTTTGAGGAATTAACACCA+TGG | - | chr2_4:3387760-3387779 | None:intergenic | 35.0% |
| CTGTTCTTGATCTTTCTTTG+AGG | - | chr2_4:3387774-3387793 | None:intergenic | 35.0% | |
| CTCAAAGAAAGATCAAGAAC+AGG | + | chr2_4:3387772-3387791 | Msa0308940:CDS | 35.0% | |
| TAAAACAGTAGTAGGAGTTG+TGG | - | chr2_4:3387858-3387877 | None:intergenic | 35.0% | |
| GTAGGATGTAAAACAGTAGT+AGG | - | chr2_4:3387866-3387885 | None:intergenic | 35.0% | |
| ATGTTCTTAGGTTCTATAGG+CGG | - | chr2_4:3388291-3388310 | None:intergenic | 35.0% | |
| GTATGGAAAAGAAGAGAAAG+TGG | + | chr2_4:3388339-3388358 | Msa0308940:intron | 35.0% | |
| ! | GTTAGTGTACCATGGTTTTT+GGG | + | chr2_4:3388390-3388409 | Msa0308940:intron | 35.0% |
| !! | GGCTCTATTGGCTTAAATAT+AGG | + | chr2_4:3388425-3388444 | Msa0308940:intron | 35.0% |
| GAAATGATTGAGTGTATCTC+AGG | + | chr2_4:3388510-3388529 | Msa0308940:intron | 35.0% | |
| !! | ATCTGTGCTGTTCTAAAGTA+TGG | + | chr2_4:3389023-3389042 | Msa0308940:CDS | 35.0% |
| ATAATTACCTGAGGAGTAAG+GGG | - | chr2_4:3386885-3386904 | None:intergenic | 35.0% | |
| GATAATTACCTGAGGAGTAA+GGG | - | chr2_4:3386886-3386905 | None:intergenic | 35.0% | |
| AGATAATTACCTGAGGAGTA+AGG | - | chr2_4:3386887-3386906 | None:intergenic | 35.0% | |
| TGAAGATAGCTTCAAGTATG+CGG | - | chr2_4:3387112-3387131 | None:intergenic | 35.0% | |
| CTTGAAGCTATCTTCAATTC+TGG | + | chr2_4:3387116-3387135 | Msa0308940:CDS | 35.0% | |
| ! | AGCTATCTTCAATTCTGGAA+TGG | + | chr2_4:3387121-3387140 | Msa0308940:CDS | 35.0% |
| ATCTTCCTTATCTCTTCTCT+TGG | - | chr2_4:3387155-3387174 | None:intergenic | 35.0% | |
| ! | TATGCTTGCTTCTTGATTTG+CGG | - | chr2_4:3387241-3387260 | None:intergenic | 35.0% |
| !!! | TCTGATTCTTGTTCTGGTTT+TGG | - | chr2_4:3387277-3387296 | None:intergenic | 35.0% |
| !!! | AGTGAATTAGGGTTTTGTTG+TGG | - | chr2_4:3387332-3387351 | None:intergenic | 35.0% |
| ! | GCAGGTATTAATTCTTTTGG+TGG | - | chr2_4:3387410-3387429 | None:intergenic | 35.0% |
| GAAACCAAGGGAAAATACTT+TGG | - | chr2_4:3387432-3387451 | None:intergenic | 35.0% | |
| ATTGATGTTAGGGAAACCAA+GGG | - | chr2_4:3387444-3387463 | None:intergenic | 35.0% | |
| GCACAACATCATTGATGTTA+GGG | - | chr2_4:3387454-3387473 | None:intergenic | 35.0% | |
| ! | AGAAGGGTAGTTACATTTTG+AGG | - | chr2_4:3387524-3387543 | None:intergenic | 35.0% |
| CCTTGTGATGTAACATTGTT+AGG | - | chr2_4:3387626-3387645 | None:intergenic | 35.0% | |
| CCTAACAATGTTACATCACA+AGG | + | chr2_4:3387623-3387642 | Msa0308940:CDS | 35.0% | |
| ! | CTTTTCTGAACTTTCCAACA+TGG | + | chr2_4:3387652-3387671 | Msa0308940:CDS | 35.0% |
| TAGTGCAATTACCAGTGTTA+TGG | - | chr2_4:3387706-3387725 | None:intergenic | 35.0% | |
| ! | TCTTTGAGGAATTAACACCA+TGG | - | chr2_4:3387760-3387779 | None:intergenic | 35.0% |
| CTGTTCTTGATCTTTCTTTG+AGG | - | chr2_4:3387774-3387793 | None:intergenic | 35.0% | |
| CTCAAAGAAAGATCAAGAAC+AGG | + | chr2_4:3387772-3387791 | Msa0308940:CDS | 35.0% | |
| TAAAACAGTAGTAGGAGTTG+TGG | - | chr2_4:3387858-3387877 | None:intergenic | 35.0% | |
| GTAGGATGTAAAACAGTAGT+AGG | - | chr2_4:3387866-3387885 | None:intergenic | 35.0% | |
| ATGTTCTTAGGTTCTATAGG+CGG | - | chr2_4:3388291-3388310 | None:intergenic | 35.0% | |
| GTATGGAAAAGAAGAGAAAG+TGG | + | chr2_4:3388339-3388358 | Msa0308940:intron | 35.0% | |
| ! | GTTAGTGTACCATGGTTTTT+GGG | + | chr2_4:3388390-3388409 | Msa0308940:intron | 35.0% |
| !! | GGCTCTATTGGCTTAAATAT+AGG | + | chr2_4:3388425-3388444 | Msa0308940:intron | 35.0% |
| GAAATGATTGAGTGTATCTC+AGG | + | chr2_4:3388510-3388529 | Msa0308940:intron | 35.0% | |
| !! | ATCTGTGCTGTTCTAAAGTA+TGG | + | chr2_4:3389023-3389042 | Msa0308940:CDS | 35.0% |
| !!! | AGAAGGTTTTGTTGGTTCTG+TGG | + | chr2_4:3386638-3386657 | Msa0308940:five_prime_UTR | 40.0% |
| !!! | GAAGGTTTTGTTGGTTCTGT+GGG | + | chr2_4:3386639-3386658 | Msa0308940:five_prime_UTR | 40.0% |
| TGGCTTCATCAAATAGACAC+TGG | + | chr2_4:3386768-3386787 | Msa0308940:CDS | 40.0% | |
| GGCTTAGACTTAAACATGCT+TGG | - | chr2_4:3386794-3386813 | None:intergenic | 40.0% | |
| !!! | ATGCGGATTTGTTCTGGTTT+TGG | - | chr2_4:3387095-3387114 | None:intergenic | 40.0% |
| ! | TCAAGTATGCGGATTTGTTC+TGG | - | chr2_4:3387101-3387120 | None:intergenic | 40.0% |
| ATCCACCAAGAGAAGAGATA+AGG | + | chr2_4:3387147-3387166 | Msa0308940:CDS | 40.0% | |
| TTCCTTATCTCTTCTCTTGG+TGG | - | chr2_4:3387152-3387171 | None:intergenic | 40.0% | |
| ! | TTGCAAGAGTATGGTCAAGT+TGG | + | chr2_4:3387185-3387204 | Msa0308940:CDS | 40.0% |
| !!! | TGCTTCTTGATTTGCGGTTT+TGG | - | chr2_4:3387235-3387254 | None:intergenic | 40.0% |
| !!! | TCTTGTTCTGGTTTTGGAGA+TGG | - | chr2_4:3387271-3387290 | None:intergenic | 40.0% |
| !! | TCTGGTTCTGATTCTTGTTC+TGG | - | chr2_4:3387283-3387302 | None:intergenic | 40.0% |
| CCTGATTCTGATTCTGATTC+TGG | - | chr2_4:3387301-3387320 | None:intergenic | 40.0% | |
| CCAGAATCAGAATCAGAATC+AGG | + | chr2_4:3387298-3387317 | Msa0308940:CDS | 40.0% | |
| GGTACAGTAGCAGAAATTTG+AGG | - | chr2_4:3387356-3387375 | None:intergenic | 40.0% | |
| GAGGAAGATGAAGAAGATGA+AGG | - | chr2_4:3387377-3387396 | None:intergenic | 40.0% | |
| ! | TTTTGGTGGAGATTTCTCAG+AGG | - | chr2_4:3387396-3387415 | None:intergenic | 40.0% |
| CATTGATGTTAGGGAAACCA+AGG | - | chr2_4:3387445-3387464 | None:intergenic | 40.0% | |
| GGCACAACATCATTGATGTT+AGG | - | chr2_4:3387455-3387474 | None:intergenic | 40.0% | |
| ACAGAAGCAGTTGGAGAATT+AGG | - | chr2_4:3387476-3387495 | None:intergenic | 40.0% | |
| !!! | TTTTGGTTCACAGAAGCAGT+TGG | - | chr2_4:3387485-3387504 | None:intergenic | 40.0% |
| AAGAAGAAAGTCTCAGTAGC+TGG | - | chr2_4:3387569-3387588 | None:intergenic | 40.0% | |
| TGTTCATGATCTCACTAAGC+AGG | - | chr2_4:3387736-3387755 | None:intergenic | 40.0% | |
| AGTGAGATCATGAACAACCA+TGG | + | chr2_4:3387740-3387759 | Msa0308940:CDS | 40.0% | |
| AAACAGATGTTCAGATGTGG+GGG | - | chr2_4:3387827-3387846 | None:intergenic | 40.0% | |
| CAAACAGATGTTCAGATGTG+GGG | - | chr2_4:3387828-3387847 | None:intergenic | 40.0% | |
| GCAAACAGATGTTCAGATGT+GGG | - | chr2_4:3387829-3387848 | None:intergenic | 40.0% | |
| GATAGGTGATTGAACAGTGA+TGG | - | chr2_4:3387900-3387919 | None:intergenic | 40.0% | |
| CCTTGCACTTGAGAAATGAT+AGG | - | chr2_4:3387917-3387936 | None:intergenic | 40.0% | |
| CCTATCATTTCTCAAGTGCA+AGG | + | chr2_4:3387914-3387933 | Msa0308940:CDS | 40.0% | |
| ! | GGTTAGTGTACCATGGTTTT+TGG | + | chr2_4:3388389-3388408 | Msa0308940:intron | 40.0% |
| ATTGAGTGTATCTCAGGCAT+TGG | + | chr2_4:3388516-3388535 | Msa0308940:intron | 40.0% | |
| AGTGGTGTTCATCAATGATG+TGG | + | chr2_4:3388563-3388582 | Msa0308940:CDS | 40.0% | |
| ! | TGGACCTTTTAATGTTCGTG+CGG | + | chr2_4:3388602-3388621 | Msa0308940:CDS | 40.0% |
| AATGCCGCACGAACATTAAA+AGG | - | chr2_4:3388609-3388628 | None:intergenic | 40.0% | |
| TTTAATGTTCGTGCGGCATT+TGG | + | chr2_4:3388609-3388628 | Msa0308940:CDS | 40.0% | |
| TTAATGTTCGTGCGGCATTT+GGG | + | chr2_4:3388610-3388629 | Msa0308940:CDS | 40.0% | |
| GCTGTTCTTGTACATCAAAC+TGG | + | chr2_4:3388639-3388658 | Msa0308940:CDS | 40.0% | |
| !! | CCATACTGGTTTGTTAACAC+AGG | - | chr2_4:3388669-3388688 | None:intergenic | 40.0% |
| CCTGTGTTAACAAACCAGTA+TGG | + | chr2_4:3388666-3388685 | Msa0308940:CDS | 40.0% | |
| GAAAATAACATGCACCATGC+TGG | - | chr2_4:3388710-3388729 | None:intergenic | 40.0% | |
| AGATGTAGGGGAAAAAATGC+TGG | + | chr2_4:3388826-3388845 | Msa0308940:intron | 40.0% | |
| AAAAATGCTGGAGAGTGATG+AGG | + | chr2_4:3388838-3388857 | Msa0308940:intron | 40.0% | |
| !!! | AGAAGGTTTTGTTGGTTCTG+TGG | + | chr2_4:3386638-3386657 | Msa0308940:five_prime_UTR | 40.0% |
| !!! | GAAGGTTTTGTTGGTTCTGT+GGG | + | chr2_4:3386639-3386658 | Msa0308940:five_prime_UTR | 40.0% |
| TGGCTTCATCAAATAGACAC+TGG | + | chr2_4:3386768-3386787 | Msa0308940:CDS | 40.0% | |
| GGCTTAGACTTAAACATGCT+TGG | - | chr2_4:3386794-3386813 | None:intergenic | 40.0% | |
| !!! | ATGCGGATTTGTTCTGGTTT+TGG | - | chr2_4:3387095-3387114 | None:intergenic | 40.0% |
| ! | TCAAGTATGCGGATTTGTTC+TGG | - | chr2_4:3387101-3387120 | None:intergenic | 40.0% |
| ATCCACCAAGAGAAGAGATA+AGG | + | chr2_4:3387147-3387166 | Msa0308940:CDS | 40.0% | |
| TTCCTTATCTCTTCTCTTGG+TGG | - | chr2_4:3387152-3387171 | None:intergenic | 40.0% | |
| ! | TTGCAAGAGTATGGTCAAGT+TGG | + | chr2_4:3387185-3387204 | Msa0308940:CDS | 40.0% |
| !!! | TGCTTCTTGATTTGCGGTTT+TGG | - | chr2_4:3387235-3387254 | None:intergenic | 40.0% |
| !!! | TCTTGTTCTGGTTTTGGAGA+TGG | - | chr2_4:3387271-3387290 | None:intergenic | 40.0% |
| !! | TCTGGTTCTGATTCTTGTTC+TGG | - | chr2_4:3387283-3387302 | None:intergenic | 40.0% |
| CCTGATTCTGATTCTGATTC+TGG | - | chr2_4:3387301-3387320 | None:intergenic | 40.0% | |
| CCAGAATCAGAATCAGAATC+AGG | + | chr2_4:3387298-3387317 | Msa0308940:CDS | 40.0% | |
| GGTACAGTAGCAGAAATTTG+AGG | - | chr2_4:3387356-3387375 | None:intergenic | 40.0% | |
| GAGGAAGATGAAGAAGATGA+AGG | - | chr2_4:3387377-3387396 | None:intergenic | 40.0% | |
| ! | TTTTGGTGGAGATTTCTCAG+AGG | - | chr2_4:3387396-3387415 | None:intergenic | 40.0% |
| CATTGATGTTAGGGAAACCA+AGG | - | chr2_4:3387445-3387464 | None:intergenic | 40.0% | |
| GGCACAACATCATTGATGTT+AGG | - | chr2_4:3387455-3387474 | None:intergenic | 40.0% | |
| ACAGAAGCAGTTGGAGAATT+AGG | - | chr2_4:3387476-3387495 | None:intergenic | 40.0% | |
| !!! | TTTTGGTTCACAGAAGCAGT+TGG | - | chr2_4:3387485-3387504 | None:intergenic | 40.0% |
| AAGAAGAAAGTCTCAGTAGC+TGG | - | chr2_4:3387569-3387588 | None:intergenic | 40.0% | |
| TGTTCATGATCTCACTAAGC+AGG | - | chr2_4:3387736-3387755 | None:intergenic | 40.0% | |
| AGTGAGATCATGAACAACCA+TGG | + | chr2_4:3387740-3387759 | Msa0308940:CDS | 40.0% | |
| AAACAGATGTTCAGATGTGG+GGG | - | chr2_4:3387827-3387846 | None:intergenic | 40.0% | |
| CAAACAGATGTTCAGATGTG+GGG | - | chr2_4:3387828-3387847 | None:intergenic | 40.0% | |
| GCAAACAGATGTTCAGATGT+GGG | - | chr2_4:3387829-3387848 | None:intergenic | 40.0% | |
| GATAGGTGATTGAACAGTGA+TGG | - | chr2_4:3387900-3387919 | None:intergenic | 40.0% | |
| CCTTGCACTTGAGAAATGAT+AGG | - | chr2_4:3387917-3387936 | None:intergenic | 40.0% | |
| CCTATCATTTCTCAAGTGCA+AGG | + | chr2_4:3387914-3387933 | Msa0308940:CDS | 40.0% | |
| ! | GGTTAGTGTACCATGGTTTT+TGG | + | chr2_4:3388389-3388408 | Msa0308940:intron | 40.0% |
| ATTGAGTGTATCTCAGGCAT+TGG | + | chr2_4:3388516-3388535 | Msa0308940:intron | 40.0% | |
| AGTGGTGTTCATCAATGATG+TGG | + | chr2_4:3388563-3388582 | Msa0308940:CDS | 40.0% | |
| ! | TGGACCTTTTAATGTTCGTG+CGG | + | chr2_4:3388602-3388621 | Msa0308940:CDS | 40.0% |
| AATGCCGCACGAACATTAAA+AGG | - | chr2_4:3388609-3388628 | None:intergenic | 40.0% | |
| TTTAATGTTCGTGCGGCATT+TGG | + | chr2_4:3388609-3388628 | Msa0308940:CDS | 40.0% | |
| TTAATGTTCGTGCGGCATTT+GGG | + | chr2_4:3388610-3388629 | Msa0308940:CDS | 40.0% | |
| GCTGTTCTTGTACATCAAAC+TGG | + | chr2_4:3388639-3388658 | Msa0308940:CDS | 40.0% | |
| !! | CCATACTGGTTTGTTAACAC+AGG | - | chr2_4:3388669-3388688 | None:intergenic | 40.0% |
| CCTGTGTTAACAAACCAGTA+TGG | + | chr2_4:3388666-3388685 | Msa0308940:CDS | 40.0% | |
| GAAAATAACATGCACCATGC+TGG | - | chr2_4:3388710-3388729 | None:intergenic | 40.0% | |
| AGATGTAGGGGAAAAAATGC+TGG | + | chr2_4:3388826-3388845 | Msa0308940:intron | 40.0% | |
| AAAAATGCTGGAGAGTGATG+AGG | + | chr2_4:3388838-3388857 | Msa0308940:intron | 40.0% | |
| !! | CATTGGTGATGAGTGTTGCA+GGG | - | chr2_4:3386815-3386834 | None:intergenic | 45.0% |
| ! | AGTTGATGTCATGCTGCCAT+TGG | - | chr2_4:3386832-3386851 | None:intergenic | 45.0% |
| TTTGGATTCCACCTTGGCTT+TGG | - | chr2_4:3387077-3387096 | None:intergenic | 45.0% | |
| !!! | TCTGGTTTTGGATTCCACCT+TGG | - | chr2_4:3387083-3387102 | None:intergenic | 45.0% |
| AGAGCACAGTTGCAAGAGTA+TGG | + | chr2_4:3387176-3387195 | Msa0308940:CDS | 45.0% | |
| CCAAGGGAAAATACTTTGGC+AGG | - | chr2_4:3387428-3387447 | None:intergenic | 45.0% | |
| !! | CCTGCCAAAGTATTTTCCCT+TGG | + | chr2_4:3387425-3387444 | Msa0308940:CDS | 45.0% |
| !! | TACTTGTGGTGGTGGAAGAA+GGG | - | chr2_4:3387540-3387559 | None:intergenic | 45.0% |
| !! | TTACTTGTGGTGGTGGAAGA+AGG | - | chr2_4:3387541-3387560 | None:intergenic | 45.0% |
| TTCTTCCCAGTGCAACATCA+TGG | + | chr2_4:3387584-3387603 | Msa0308940:CDS | 45.0% | |
| CTTGTCCATGATGTTGCACT+GGG | - | chr2_4:3387592-3387611 | None:intergenic | 45.0% | |
| TGATTGAGCAGGAACCATGT+TGG | - | chr2_4:3387669-3387688 | None:intergenic | 45.0% | |
| ATGGTTCCTGCTCAATCACA+TGG | + | chr2_4:3387671-3387690 | Msa0308940:CDS | 45.0% | |
| AACAGATGTTCAGATGTGGG+GGG | - | chr2_4:3387826-3387845 | None:intergenic | 45.0% | |
| GGCAAACAGATGTTCAGATG+TGG | - | chr2_4:3387830-3387849 | None:intergenic | 45.0% | |
| AACAGTAGTAGGAGTTGTGG+CGG | - | chr2_4:3387855-3387874 | None:intergenic | 45.0% | |
| !! | TGATTGAACAGTGATGGTGG+AGG | - | chr2_4:3387894-3387913 | None:intergenic | 45.0% |
| AGGTGATTGAACAGTGATGG+TGG | - | chr2_4:3387897-3387916 | None:intergenic | 45.0% | |
| AAGACGTGGTTAGTGTACCA+TGG | + | chr2_4:3388382-3388401 | Msa0308940:intron | 45.0% | |
| !! | ACTGATTTTGCAGCAACACC+TGG | - | chr2_4:3388546-3388565 | None:intergenic | 45.0% |
| !! | AGGTGTTGCTGCAAAATCAG+TGG | + | chr2_4:3388545-3388564 | Msa0308940:CDS | 45.0% |
| CATCAATGATGTGGCCTTTG+AGG | + | chr2_4:3388572-3388591 | Msa0308940:CDS | 45.0% | |
| TAATGTTCGTGCGGCATTTG+GGG | + | chr2_4:3388611-3388630 | Msa0308940:CDS | 45.0% | |
| AGTGAAGAGTGACACCATAC+TGG | - | chr2_4:3388683-3388702 | None:intergenic | 45.0% | |
| !! | CATTGGTGATGAGTGTTGCA+GGG | - | chr2_4:3386815-3386834 | None:intergenic | 45.0% |
| ! | AGTTGATGTCATGCTGCCAT+TGG | - | chr2_4:3386832-3386851 | None:intergenic | 45.0% |
| TTTGGATTCCACCTTGGCTT+TGG | - | chr2_4:3387077-3387096 | None:intergenic | 45.0% | |
| !!! | TCTGGTTTTGGATTCCACCT+TGG | - | chr2_4:3387083-3387102 | None:intergenic | 45.0% |
| AGAGCACAGTTGCAAGAGTA+TGG | + | chr2_4:3387176-3387195 | Msa0308940:CDS | 45.0% | |
| CCAAGGGAAAATACTTTGGC+AGG | - | chr2_4:3387428-3387447 | None:intergenic | 45.0% | |
| !! | CCTGCCAAAGTATTTTCCCT+TGG | + | chr2_4:3387425-3387444 | Msa0308940:CDS | 45.0% |
| !! | TACTTGTGGTGGTGGAAGAA+GGG | - | chr2_4:3387540-3387559 | None:intergenic | 45.0% |
| !! | TTACTTGTGGTGGTGGAAGA+AGG | - | chr2_4:3387541-3387560 | None:intergenic | 45.0% |
| TTCTTCCCAGTGCAACATCA+TGG | + | chr2_4:3387584-3387603 | Msa0308940:CDS | 45.0% | |
| CTTGTCCATGATGTTGCACT+GGG | - | chr2_4:3387592-3387611 | None:intergenic | 45.0% | |
| TGATTGAGCAGGAACCATGT+TGG | - | chr2_4:3387669-3387688 | None:intergenic | 45.0% | |
| ATGGTTCCTGCTCAATCACA+TGG | + | chr2_4:3387671-3387690 | Msa0308940:CDS | 45.0% | |
| AACAGATGTTCAGATGTGGG+GGG | - | chr2_4:3387826-3387845 | None:intergenic | 45.0% | |
| GGCAAACAGATGTTCAGATG+TGG | - | chr2_4:3387830-3387849 | None:intergenic | 45.0% | |
| AACAGTAGTAGGAGTTGTGG+CGG | - | chr2_4:3387855-3387874 | None:intergenic | 45.0% | |
| !! | TGATTGAACAGTGATGGTGG+AGG | - | chr2_4:3387894-3387913 | None:intergenic | 45.0% |
| AGGTGATTGAACAGTGATGG+TGG | - | chr2_4:3387897-3387916 | None:intergenic | 45.0% | |
| AAGACGTGGTTAGTGTACCA+TGG | + | chr2_4:3388382-3388401 | Msa0308940:intron | 45.0% | |
| !! | ACTGATTTTGCAGCAACACC+TGG | - | chr2_4:3388546-3388565 | None:intergenic | 45.0% |
| !! | AGGTGTTGCTGCAAAATCAG+TGG | + | chr2_4:3388545-3388564 | Msa0308940:CDS | 45.0% |
| CATCAATGATGTGGCCTTTG+AGG | + | chr2_4:3388572-3388591 | Msa0308940:CDS | 45.0% | |
| TAATGTTCGTGCGGCATTTG+GGG | + | chr2_4:3388611-3388630 | Msa0308940:CDS | 45.0% | |
| AGTGAAGAGTGACACCATAC+TGG | - | chr2_4:3388683-3388702 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTATTTTTCTTTT+AGG | + | chr2_4:3388225-3388244 | Msa0308940:intron | 5.0% |
| !!! | TATTTTTTTATTTTTCTTTT+AGG | + | chr2_4:3388225-3388244 | Msa0308940:intron | 5.0% |
| !! | CCATTGGTGATGAGTGTTGC+AGG | - | chr2_4:3386816-3386835 | None:intergenic | 50.0% |
| CCTGCAACACTCATCACCAA+TGG | + | chr2_4:3386813-3386832 | Msa0308940:CDS | 50.0% | |
| GTAGCTGGTGCAGTTACTTG+TGG | - | chr2_4:3387554-3387573 | None:intergenic | 50.0% | |
| CCTTGTCCATGATGTTGCAC+TGG | - | chr2_4:3387593-3387612 | None:intergenic | 50.0% | |
| CCAGTGCAACATCATGGACA+AGG | + | chr2_4:3387590-3387609 | Msa0308940:CDS | 50.0% | |
| TGCTGACCATGTGATTGAGC+AGG | - | chr2_4:3387680-3387699 | None:intergenic | 50.0% | |
| GGTCAGCAACACCATAACAC+TGG | + | chr2_4:3387692-3387711 | Msa0308940:CDS | 50.0% | |
| TGTTCAGATGTGGGGGGATT+TGG | - | chr2_4:3387820-3387839 | None:intergenic | 50.0% | |
| ACAGTAGTAGGAGTTGTGGC+GGG | - | chr2_4:3387854-3387873 | None:intergenic | 50.0% | |
| !! | GTGATGGTGGAGGAAGTAGT+AGG | - | chr2_4:3387884-3387903 | None:intergenic | 50.0% |
| CACACGTGACCCAAAAACCA+TGG | - | chr2_4:3388402-3388421 | None:intergenic | 50.0% | |
| !!! | GTTTTTGGGTCACGTGTGCA+TGG | + | chr2_4:3388404-3388423 | Msa0308940:intron | 50.0% |
| ! | TCACGTGTGCATGGCTCTAT+TGG | + | chr2_4:3388413-3388432 | Msa0308940:intron | 50.0% |
| !! | ATCTCAGGCATTGGTGAACC+AGG | + | chr2_4:3388525-3388544 | Msa0308940:intron | 50.0% |
| AGGTCCAGAAGCAACCTCAA+AGG | - | chr2_4:3388589-3388608 | None:intergenic | 50.0% | |
| ACTCTTCACTCACTCCAGCA+TGG | + | chr2_4:3388693-3388712 | Msa0308940:CDS | 50.0% | |
| !! | CCATTGGTGATGAGTGTTGC+AGG | - | chr2_4:3386816-3386835 | None:intergenic | 50.0% |
| CCTGCAACACTCATCACCAA+TGG | + | chr2_4:3386813-3386832 | Msa0308940:CDS | 50.0% | |
| GTAGCTGGTGCAGTTACTTG+TGG | - | chr2_4:3387554-3387573 | None:intergenic | 50.0% | |
| CCTTGTCCATGATGTTGCAC+TGG | - | chr2_4:3387593-3387612 | None:intergenic | 50.0% | |
| CCAGTGCAACATCATGGACA+AGG | + | chr2_4:3387590-3387609 | Msa0308940:CDS | 50.0% | |
| TGCTGACCATGTGATTGAGC+AGG | - | chr2_4:3387680-3387699 | None:intergenic | 50.0% | |
| GGTCAGCAACACCATAACAC+TGG | + | chr2_4:3387692-3387711 | Msa0308940:CDS | 50.0% | |
| TGTTCAGATGTGGGGGGATT+TGG | - | chr2_4:3387820-3387839 | None:intergenic | 50.0% | |
| ACAGTAGTAGGAGTTGTGGC+GGG | - | chr2_4:3387854-3387873 | None:intergenic | 50.0% | |
| !! | GTGATGGTGGAGGAAGTAGT+AGG | - | chr2_4:3387884-3387903 | None:intergenic | 50.0% |
| CACACGTGACCCAAAAACCA+TGG | - | chr2_4:3388402-3388421 | None:intergenic | 50.0% | |
| !!! | GTTTTTGGGTCACGTGTGCA+TGG | + | chr2_4:3388404-3388423 | Msa0308940:intron | 50.0% |
| ! | TCACGTGTGCATGGCTCTAT+TGG | + | chr2_4:3388413-3388432 | Msa0308940:intron | 50.0% |
| !! | ATCTCAGGCATTGGTGAACC+AGG | + | chr2_4:3388525-3388544 | Msa0308940:intron | 50.0% |
| AGGTCCAGAAGCAACCTCAA+AGG | - | chr2_4:3388589-3388608 | None:intergenic | 50.0% | |
| ACTCTTCACTCACTCCAGCA+TGG | + | chr2_4:3388693-3388712 | Msa0308940:CDS | 50.0% | |
| CACAGAACCCCTTACTCCTC+AGG | + | chr2_4:3386875-3386894 | Msa0308940:CDS | 55.0% | |
| GAAGTCCTGAGCCAAAGCCA+AGG | + | chr2_4:3387063-3387082 | Msa0308940:CDS | 55.0% | |
| !! | TTCCACCTTGGCTTTGGCTC+AGG | - | chr2_4:3387071-3387090 | None:intergenic | 55.0% |
| GGTGCAGTTACTTGTGGTGG+TGG | - | chr2_4:3387548-3387567 | None:intergenic | 55.0% | |
| GCTGGTGCAGTTACTTGTGG+TGG | - | chr2_4:3387551-3387570 | None:intergenic | 55.0% | |
| !! | GTGGCCTTTGAGGTTGCTTC+TGG | + | chr2_4:3388582-3388601 | Msa0308940:CDS | 55.0% |
| CACAGAACCCCTTACTCCTC+AGG | + | chr2_4:3386875-3386894 | Msa0308940:CDS | 55.0% | |
| GAAGTCCTGAGCCAAAGCCA+AGG | + | chr2_4:3387063-3387082 | Msa0308940:CDS | 55.0% | |
| !! | TTCCACCTTGGCTTTGGCTC+AGG | - | chr2_4:3387071-3387090 | None:intergenic | 55.0% |
| GGTGCAGTTACTTGTGGTGG+TGG | - | chr2_4:3387548-3387567 | None:intergenic | 55.0% | |
| GCTGGTGCAGTTACTTGTGG+TGG | - | chr2_4:3387551-3387570 | None:intergenic | 55.0% | |
| !! | GTGGCCTTTGAGGTTGCTTC+TGG | + | chr2_4:3388582-3388601 | Msa0308940:CDS | 55.0% |
| GTCCTGAGCCAAAGCCAAGG+TGG | + | chr2_4:3387066-3387085 | Msa0308940:CDS | 60.0% | |
| ! | GTAGTAGGAGTTGTGGCGGG+TGG | - | chr2_4:3387851-3387870 | None:intergenic | 60.0% |
| GTCCTGAGCCAAAGCCAAGG+TGG | + | chr2_4:3387066-3387085 | Msa0308940:CDS | 60.0% | |
| ! | GTAGTAGGAGTTGTGGCGGG+TGG | - | chr2_4:3387851-3387870 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 3386630 | 3389082 | 3386630 | ID=Msa0308940;Name=Msa0308940 |
| chr2_4 | mRNA | 3386630 | 3389082 | 3386630 | ID=Msa0308940-mRNA-1;Parent=Msa0308940;Name=Msa0308940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=137|0.33|0.25|1|0.66|0.75|4|0|444 |
| chr2_4 | exon | 3386630 | 3386896 | 3386630 | ID=Msa0308940-mRNA-1:exon:978;Parent=Msa0308940-mRNA-1 |
| chr2_4 | exon | 3387051 | 3387935 | 3387051 | ID=Msa0308940-mRNA-1:exon:979;Parent=Msa0308940-mRNA-1 |
| chr2_4 | exon | 3388532 | 3388731 | 3388532 | ID=Msa0308940-mRNA-1:exon:980;Parent=Msa0308940-mRNA-1 |
| chr2_4 | exon | 3388963 | 3389082 | 3388963 | ID=Msa0308940-mRNA-1:exon:981;Parent=Msa0308940-mRNA-1 |
| chr2_4 | five_prime_UTR | 3386630 | 3386766 | 3386630 | ID=Msa0308940-mRNA-1:five_prime_utr;Parent=Msa0308940-mRNA-1 |
| chr2_4 | CDS | 3386767 | 3386896 | 3386767 | ID=Msa0308940-mRNA-1:cds;Parent=Msa0308940-mRNA-1 |
| chr2_4 | CDS | 3387051 | 3387935 | 3387051 | ID=Msa0308940-mRNA-1:cds;Parent=Msa0308940-mRNA-1 |
| chr2_4 | CDS | 3388532 | 3388731 | 3388532 | ID=Msa0308940-mRNA-1:cds;Parent=Msa0308940-mRNA-1 |
| chr2_4 | CDS | 3388963 | 3389082 | 3388963 | ID=Msa0308940-mRNA-1:cds;Parent=Msa0308940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
