AlfalfaGEDB | Msa0308940

M. sativa cultivar zhongmu-4 / Msa0308940

KEGG: K09326
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007163 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010075 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090451 GO:0090691 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0308940	AES63937.1	94.748	457	11	1	1	444	1	457	0.0	884

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0308940	sp\|Q6X7J5\|WOX8_ARATH	36.538	416	161	11	1	405	1	324	5.01e-72	233

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0308940	TF	HB-WOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0193130	Msa0308940	0.889727	1.869109e-73	-8.615850e-47
Msa0234360	Msa0308940	0.969271	7.062875e-130	-8.615850e-47
Msa0273150	Msa0308940	0.906667	1.161846e-80	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0308940	MtrunA17_Chr2g0283141	94.748	457	11	1	1	444	1	457	0.0	884
Msa0308940	MtrunA17_Chr7g0223471	44.647	439	178	18	1	407	1	406	1.13e-88	275
Msa0308940	MtrunA17_Chr4g0046231	36.676	349	180	10	74	405	1	325	4.14e-43	154
Msa0308940	MtrunA17_Chr6g0460691	66.667	60	20	0	47	106	24	83	7.94e-23	98.2
Msa0308940	MtrunA17_Chr7g0254251	59.341	91	36	1	39	129	13	102	3.04e-22	95.9
Msa0308940	MtrunA17_Chr7g0254251	44.615	65	36	0	341	405	201	265	1.54e-13	70.9
Msa0308940	MtrunA17_Chr4g0046251	59.375	64	26	0	342	405	21	84	5.83e-17	75.9
Msa0308940	MtrunA17_Chr4g0043891	37.805	82	51	0	50	131	3	84	8.01e-17	80.1
Msa0308940	MtrunA17_Chr8g0392991	35.238	105	68	0	55	159	96	200	1.60e-15	77.8
Msa0308940	MtrunA17_Chr1g0212511	44.615	65	36	0	53	117	83	147	3.72e-15	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0308940	AT5G45980.1	36.538	416	161	11	1	405	1	324	5.10e-73	233
Msa0308940	AT2G33880.1	85.714	126	14	3	1	124	1	124	4.81e-68	221
Msa0308940	AT2G33880.2	85.714	126	14	3	1	124	1	124	6.53e-68	221
Msa0308940	AT3G03660.1	64.286	70	24	1	38	106	15	84	1.89e-23	99.8
Msa0308940	AT3G03660.1	51.786	56	27	0	350	405	208	263	2.38e-12	67.4
Msa0308940	AT3G03660.2	64.286	70	24	1	38	106	15	84	3.08e-23	99.8
Msa0308940	AT3G03660.2	51.786	56	27	0	350	405	237	292	3.95e-12	67.4
Msa0308940	AT3G03660.4	64.286	70	24	1	38	106	15	84	4.83e-23	99.4
Msa0308940	AT3G03660.4	52.727	55	26	0	351	405	209	263	7.26e-12	66.6
Msa0308940	AT3G03660.3	64.286	70	24	1	38	106	15	84	7.10e-23	99.4

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Find 103 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGATGTTCAGATGTGG+GGG	0.599793	2_4:-3387824	None:intergenic
AAATTTGAGGAAGTGAATTA+GGG	0.386654	2_4:-3387340	None:intergenic
AACAGATGTTCAGATGTGGG+GGG	0.713218	2_4:-3387823	None:intergenic
AACAGTAGTAGGAGTTGTGG+CGG	0.580421	2_4:-3387852	None:intergenic
AAGAAGAAAGTCTCAGTAGC+TGG	0.533457	2_4:-3387566	None:intergenic
AATGCCGCACGAACATTAAA+AGG	0.340006	2_4:-3388606	None:intergenic
ACAGAAGCAGTTGGAGAATT+AGG	0.358074	2_4:-3387473	None:intergenic
ACAGTAGTAGGAGTTGTGGC+GGG	0.646909	2_4:-3387851	None:intergenic
ACTCTTCACTCACTCCAGCA+TGG	0.587267	2_4:+3388693	Msa0308940:CDS
AGAGCACAGTTGCAAGAGTA+TGG	0.448490	2_4:+3387176	Msa0308940:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAATTTGAGGAAGTGAATT+AGG	-	chr2_4:3387344-3387363	None:intergenic	30.0%
CTAACAATGTTACATCACAA+GGG	+	chr2_4:3387624-3387643	Msa0308940:CDS	30.0%
ATAAACTAGTCAAGATCTTG+TGG	-	chr2_4:3388208-3388227	None:intergenic	30.0%
ACTATGTTCTTAGGTTCTAT+AGG	-	chr2_4:3388294-3388313	None:intergenic	30.0%
TATGGAAAAGAAGAGAAAGT+GGG	+	chr2_4:3388340-3388359	Msa0308940:intron	30.0%
AGATTAATGTGAATAAGACG+TGG	+	chr2_4:3388368-3388387	Msa0308940:intron	30.0%
GAAATTTGAGGAAGTGAATT+AGG	-	chr2_4:3387344-3387363	None:intergenic	30.0%
CTAACAATGTTACATCACAA+GGG	+	chr2_4:3387624-3387643	Msa0308940:CDS	30.0%
ATAAACTAGTCAAGATCTTG+TGG	-	chr2_4:3388208-3388227	None:intergenic	30.0%
ACTATGTTCTTAGGTTCTAT+AGG	-	chr2_4:3388294-3388313	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	3386630	3389082	3386630	ID=Msa0308940;Name=Msa0308940
chr2_4	mRNA	3386630	3389082	3386630	ID=Msa0308940-mRNA-1;Parent=Msa0308940;Name=Msa0308940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=137\|0.33\|0.25\|1\|0.66\|0.75\|4\|0\|444
chr2_4	exon	3386630	3386896	3386630	ID=Msa0308940-mRNA-1:exon:978;Parent=Msa0308940-mRNA-1
chr2_4	exon	3387051	3387935	3387051	ID=Msa0308940-mRNA-1:exon:979;Parent=Msa0308940-mRNA-1
chr2_4	exon	3388532	3388731	3388532	ID=Msa0308940-mRNA-1:exon:980;Parent=Msa0308940-mRNA-1
chr2_4	exon	3388963	3389082	3388963	ID=Msa0308940-mRNA-1:exon:981;Parent=Msa0308940-mRNA-1
chr2_4	five_prime_UTR	3386630	3386766	3386630	ID=Msa0308940-mRNA-1:five_prime_utr;Parent=Msa0308940-mRNA-1
chr2_4	CDS	3386767	3386896	3386767	ID=Msa0308940-mRNA-1:cds;Parent=Msa0308940-mRNA-1
chr2_4	CDS	3387051	3387935	3387051	ID=Msa0308940-mRNA-1:cds;Parent=Msa0308940-mRNA-1
chr2_4	CDS	3388532	3388731	3388532	ID=Msa0308940-mRNA-1:cds;Parent=Msa0308940-mRNA-1
chr2_4	CDS	3388963	3389082	3388963	ID=Msa0308940-mRNA-1:cds;Parent=Msa0308940-mRNA-1

Gene Sequence

>Msa0308940

ATGGCTTCATCAAATAGACACTGGCCAAGCATGTTTAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAGCATGACATCAACTCTTCTCTCATCTCATCTGCTTGTCACAGAACCCCTTACTCCTCAGGTTGTGAAGAGAGAAGTCCTGAGCCAAAGCCAAGGTGGAATCCAAAACCAGAACAAATCCGCATACTTGAAGCTATCTTCAATTCTGGAATGGTGAATCCACCAAGAGAAGAGATAAGGAAGATTAGAGCACAGTTGCAAGAGTATGGTCAAGTTGGTGATGCTAATGTTTTCTATTGGTTCCAAAACCGCAAATCAAGAAGCAAGCATAAGCTTCGCCATCTCCAAAACCAGAACAAGAATCAGAACCAGAATCAGAATCAGAATCAGGATCAATCACCACAACAAAACCCTAATTCACTTCCTCAAATTTCTGCTACTGTACCTTCATCTTCTTCATCTTCCTCTGAGAAATCTCCACCAAAAGAATTAATACCTGCCAAAGTATTTTCCCTTGGTTTCCCTAACATCAATGATGTTGTGCCTAATTCTCCAACTGCTTCTGTGAACCAAAACCAAACATATTTTCAGCCTCAAAATGTAACTACCCTTCTTCCACCACCACAAGTAACTGCACCAGCTACTGAGACTTTCTTCTTCCCAGTGCAACATCATGGACAAGGAATAGTACTTCCTAACAATGTTACATCACAAGGGTTTTGCTTTTCTGAACTTTCCAACATGGTTCCTGCTCAATCACATGGTCAGCAACACCATAACACTGGTAATTGCACTACTAGTTTCCTGCTTAGTGAGATCATGAACAACCATGGTGTTAATTCCTCAAAGAAAGATCAAGAACAGGATAAGTCTGTGAAAATAATGCACCAAATCCCCCCACATCTGAACATCTGTTTGCCACCCGCCACAACTCCTACTACTGTTTTACATCCTACTACTTCCTCCACCATCACTGTTCAATCACCTATCATTTCTCAAGTGCAAGGCATTGGTGAACCAGGTGTTGCTGCAAAATCAGTGGTGTTCATCAATGATGTGGCCTTTGAGGTTGCTTCTGGACCTTTTAATGTTCGTGCGGCATTTGGGGATGATGCTGTTCTTGTACATCAAACTGGTCAGCCTGTGTTAACAAACCAGTATGGTGTCACTCTTCACTCACTCCAGCATGGTGCATGTTATTTTCTTGGTTATTATTATTCAATAGAGGTTTATAGAAGAACACTGCTCATGAGAATGACTTCAGATATCTGTGCTGTTCTAAAGTATGGATATCATCATCATGACTTTGTTGACATTAATATGTAA

Protein sequence

>Msa0308940

MASSNRHWPSMFKSKPCNTHHQWQHDINSSLISSACHRTPYSSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNKNQNQNQNQNQDQSPQQNPNSLPQISATVPSSSSSSSEKSPPKELIPAKVFSLGFPNINDVVPNSPTASVNQNQTYFQPQNVTTLLPPPQVTAPATETFFFPVQHHGQGIVLPNNVTSQGFCFSELSNMVPAQSHGQQHHNTGNCTTSFLLSEIMNNHGVNSSKKDQEQDKSVKIMHQIPPHLNICLPPATTPTTVLHPTTSSTITVQSPIISQVQGIGEPGVAAKSVVFINDVAFEVASGPFNVRAAFGDDAVLVHQTGQPVLTNQYGVTLHSLQHGACYFLGYYYSIEVYRRTLLMRMTSDICAVLKYGYHHHDFVDINM*