AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0276200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276200 MtrunA17_Chr2g0288661 94.038 520 11 1 1 500 1 520 0.0 999
Msa0276200 MtrunA17_Chr2g0307291 65.385 520 160 1 1 500 1 520 0.0 722
Msa0276200 MtrunA17_Chr2g0307301 65.000 520 162 1 1 500 1 520 0.0 721
Msa0276200 MtrunA17_Chr2g0313751 66.341 511 152 1 10 500 35 545 0.0 715
Msa0276200 MtrunA17_Chr5g0446131 63.601 511 166 1 10 500 6 516 0.0 684
Msa0276200 MtrunA17_Chr2g0313781 62.452 522 163 3 11 499 8 529 0.0 682
Msa0276200 MtrunA17_Chr2g0313821 61.644 511 175 2 11 500 8 518 0.0 674
Msa0276200 MtrunA17_Chr2g0313801 61.765 510 174 2 11 499 8 517 0.0 671
Msa0276200 MtrunA17_Chr2g0313791 61.373 510 171 3 11 499 8 512 0.0 667
Msa0276200 MtrunA17_Chr2g0313761 66.333 499 148 1 22 500 15 513 0.0 654
Msa0276200 MtrunA17_Chr2g0313831 59.423 520 187 3 1 499 1 517 0.0 650
Msa0276200 MtrunA17_Chr2g0313811 61.122 517 168 3 16 499 13 529 0.0 637
Msa0276200 MtrunA17_Chr2g0313771 54.883 512 203 6 13 498 14 523 0.0 573
Msa0276200 MtrunA17_Chr8g0354511 54.191 513 209 6 11 498 13 524 0.0 553
Msa0276200 MtrunA17_Chr8g0354531 52.437 513 217 6 11 498 135 645 0.0 548
Msa0276200 MtrunA17_Chr8g0354571 51.657 513 222 6 11 498 13 524 0.0 538
Msa0276200 MtrunA17_Chr4g0014051 50.195 512 230 5 10 498 19 528 2.08e-179 514
Msa0276200 MtrunA17_Chr4g0063221 34.100 522 300 7 7 498 12 519 2.79e-107 329
Msa0276200 MtrunA17_Chr7g0262111 37.400 500 276 9 25 500 21 507 1.95e-106 327
Msa0276200 MtrunA17_Chr1g0154731 34.661 502 291 6 21 498 15 503 2.72e-104 321
Msa0276200 MtrunA17_Chr1g0193811 33.269 517 313 8 10 499 6 517 9.84e-102 315
Msa0276200 MtrunA17_Chr8g0354561 48.171 328 144 6 11 333 95 401 1.26e-95 295
Msa0276200 MtrunA17_Chr6g0457421 32.554 513 306 8 11 496 6 505 2.45e-94 295
Msa0276200 MtrunA17_Chr7g0215181 32.370 519 307 9 11 500 8 511 4.76e-93 292
Msa0276200 MtrunA17_Chr4g0004601 30.970 536 324 9 2 498 3 531 2.19e-82 265
Msa0276200 MtrunA17_Chr1g0203141 29.150 494 312 7 31 496 30 513 4.65e-81 261
Msa0276200 MtrunA17_Chr7g0235261 31.663 499 296 7 31 491 12 503 3.67e-80 258
Msa0276200 MtrunA17_Chr3g0128461 30.337 534 324 14 1 497 1 523 8.62e-77 250
Msa0276200 MtrunA17_Chr1g0203151 29.124 491 312 6 31 496 30 509 1.15e-75 247
Msa0276200 MtrunA17_Chr8g0364081 30.214 513 319 9 26 500 32 543 3.18e-75 246
Msa0276200 MtrunA17_Chr8g0336361 29.663 563 322 10 4 498 2 558 2.27e-74 244
Msa0276200 MtrunA17_Chr6g0479681 28.543 508 310 8 31 496 31 527 4.35e-72 238
Msa0276200 MtrunA17_Chr6g0472221 28.324 519 328 9 12 496 16 524 1.29e-71 236
Msa0276200 MtrunA17_Chr8g0362731 32.195 410 244 7 115 499 7 407 1.00e-68 226
Msa0276200 MtrunA17_Chr8g0354541 54.494 178 61 1 341 498 1 178 7.52e-65 207
Msa0276200 MtrunA17_Chr2g0308651 32.995 394 231 6 137 498 23 415 5.98e-62 208
Msa0276200 MtrunA17_Chr2g0307321 70.968 93 27 0 168 260 1 93 3.08e-43 149
Msa0276200 MtrunA17_Chr2g0307311 54.310 116 53 0 44 159 9 124 4.57e-37 133
Msa0276200 MtrunA17_Chr6g0472171 34.286 140 92 0 357 496 17 156 5.77e-33 122
Msa0276200 MtrunA17_Chr3g0108651 46.721 122 61 2 383 500 1 122 1.61e-32 120
Msa0276200 MtrunA17_Chr1g0182861 35.507 138 89 0 361 498 26 163 8.96e-32 119
Msa0276200 MtrunA17_Chr0c19g0493771 27.208 419 243 17 108 484 232 630 3.54e-28 118
Msa0276200 MtrunA17_Chr6g0472161 25.648 347 235 7 20 358 21 352 8.32e-28 114
Msa0276200 MtrunA17_Chr5g0396521 27.209 430 229 18 140 497 152 569 1.12e-26 113
Msa0276200 MtrunA17_Chr1g0179811 25.901 444 228 16 94 473 108 514 1.45e-26 113
Msa0276200 MtrunA17_Chr5g0403351 25.285 439 271 16 87 484 61 483 3.38e-26 111
Msa0276200 MtrunA17_Chr3g0101731 22.222 486 310 18 63 497 23 491 2.01e-24 106
Msa0276200 MtrunA17_Chr5g0403331 21.801 422 282 11 87 471 62 472 6.73e-23 101
Msa0276200 MtrunA17_Chr3g0101701 23.099 355 235 8 146 471 128 473 1.09e-22 101
Msa0276200 MtrunA17_Chr5g0446161 22.145 429 289 12 87 484 66 480 2.10e-22 100
Msa0276200 MtrunA17_Chr5g0403321 23.005 426 273 13 88 471 62 474 2.43e-22 100
Msa0276200 MtrunA17_Chr1g0162811 23.394 436 283 13 87 486 62 482 5.37e-22 99.0
Msa0276200 MtrunA17_Chr7g0260831 24.301 465 291 16 78 497 53 501 7.98e-22 98.6
Msa0276200 MtrunA17_Chr3g0101691 23.464 358 230 9 146 471 128 473 1.27e-21 97.8
Msa0276200 MtrunA17_Chr3g0101711 22.011 368 248 9 146 484 127 484 1.89e-21 97.4
Msa0276200 MtrunA17_Chr3g0101631 22.409 357 228 10 146 471 126 464 4.73e-21 96.3
Msa0276200 MtrunA17_Chr3g0116741 22.870 446 297 14 87 498 75 507 4.79e-21 96.3
Msa0276200 MtrunA17_Chr3g0101661 22.222 369 245 10 146 484 128 484 1.22e-20 95.1
Msa0276200 MtrunA17_Chr3g0101721 22.426 437 289 15 87 486 62 485 1.44e-20 94.7
Msa0276200 MtrunA17_Chr5g0431671 21.963 428 290 13 75 471 55 469 2.08e-20 94.4
Msa0276200 MtrunA17_Chr5g0446151 22.145 429 290 12 87 484 66 481 2.18e-20 94.0
Msa0276200 MtrunA17_Chr5g0445381 21.963 428 286 14 79 471 85 499 2.64e-20 94.0
Msa0276200 MtrunA17_Chr5g0445461 21.127 426 284 15 88 477 65 474 3.53e-20 93.6
Msa0276200 MtrunA17_Chr5g0431641 24.000 425 261 17 88 471 65 468 4.76e-20 93.2
Msa0276200 MtrunA17_Chr4g0052851 22.871 411 267 13 87 467 58 448 1.06e-19 92.0
Msa0276200 MtrunA17_Chr5g0445421 21.462 424 272 13 79 471 128 521 1.07e-19 92.0
Msa0276200 MtrunA17_Chr1g0163281 22.087 412 260 11 132 497 122 518 1.19e-19 92.0
Msa0276200 MtrunA17_Chr3g0116681 22.897 428 285 12 80 474 59 474 1.24e-19 91.7
Msa0276200 MtrunA17_Chr8g0377341 23.497 549 316 18 5 500 32 529 1.58e-19 91.7
Msa0276200 MtrunA17_Chr3g0101671 21.934 424 279 15 87 471 63 473 2.50e-19 90.9
Msa0276200 MtrunA17_Chr5g0445441 21.659 434 292 14 79 477 95 515 2.71e-19 90.9
Msa0276200 MtrunA17_Chr7g0246221 23.148 432 269 12 87 472 58 472 2.99e-19 90.5
Msa0276200 MtrunA17_Chr8g0351391 23.822 382 221 12 140 472 124 484 3.70e-19 90.5
Msa0276200 MtrunA17_Chr4g0076161 22.196 419 281 10 87 471 64 471 4.85e-19 90.1
Msa0276200 MtrunA17_Chr5g0445451 21.946 442 294 18 79 484 54 480 9.39e-19 89.0
Msa0276200 MtrunA17_Chr6g0463801 22.558 430 287 12 87 484 62 477 1.04e-18 89.0
Msa0276200 MtrunA17_Chr5g0445531 21.053 418 285 12 86 471 63 467 1.11e-18 89.0
Msa0276200 MtrunA17_Chr5g0405001 23.596 356 239 8 144 471 131 481 1.65e-18 88.6
Msa0276200 MtrunA17_Chr6g0463791 23.310 429 281 12 90 484 65 479 5.08e-18 86.7
Msa0276200 MtrunA17_Chr4g0024771 21.831 426 290 14 90 484 67 480 5.45e-18 86.7
Msa0276200 MtrunA17_Chr3g0101751 21.429 434 293 13 87 484 67 488 7.17e-18 86.3
Msa0276200 MtrunA17_Chr1g0182871 25.571 219 156 3 140 358 27 238 1.69e-17 82.4
Msa0276200 MtrunA17_Chr3g0101581 22.222 423 274 15 87 470 61 467 1.83e-17 85.1
Msa0276200 MtrunA17_Chr4g0058201 21.801 422 276 12 89 471 54 460 1.96e-17 85.1
Msa0276200 MtrunA17_Chr1g0184421 23.195 457 281 15 82 493 58 489 2.14e-17 84.7
Msa0276200 MtrunA17_Chr8g0390881 23.007 439 283 16 87 484 60 484 2.28e-17 84.7
Msa0276200 MtrunA17_Chr4g0058231 22.454 432 274 13 87 471 52 469 2.66e-17 84.7
Msa0276200 MtrunA17_Chr3g0119681 23.148 432 260 11 107 482 84 499 3.27e-17 84.3
Msa0276200 MtrunA17_Chr3g0101571 21.635 416 279 13 87 467 60 463 4.33e-17 84.0
Msa0276200 MtrunA17_Chr3g0101621 22.689 357 225 13 146 471 123 459 8.53e-17 82.8
Msa0276200 MtrunA17_Chr8g0334891 24.355 349 208 11 154 471 133 456 1.11e-16 82.4
Msa0276200 MtrunA17_Chr3g0101761 20.968 434 295 13 87 484 60 481 1.47e-16 82.4
Msa0276200 MtrunA17_Chr7g0246121 22.302 417 278 9 87 467 58 464 1.78e-16 82.0
Msa0276200 MtrunA17_Chr1g0163491 21.359 412 267 10 132 497 120 520 2.16e-16 82.0
Msa0276200 MtrunA17_Chr7g0218611 23.826 298 192 6 201 470 177 467 2.17e-16 81.6
Msa0276200 MtrunA17_Chr3g0101601 22.778 360 224 13 146 471 126 465 3.26e-16 81.3
Msa0276200 MtrunA17_Chr5g0443401 21.519 395 253 9 105 471 86 451 4.47e-16 80.5
Msa0276200 MtrunA17_Chr8g0361471 21.176 425 281 12 87 471 59 469 4.52e-16 80.9
Msa0276200 MtrunA17_Chr8g0357431 21.262 428 300 11 87 484 62 482 4.86e-16 80.9
Msa0276200 MtrunA17_Chr6g0449341 20.805 447 298 15 101 497 122 562 5.07e-16 80.9
Msa0276200 MtrunA17_Chr4g0039391 22.824 425 273 12 87 470 59 469 5.10e-16 80.5
Msa0276200 MtrunA17_Chr6g0466331 20.561 428 280 13 87 471 59 469 6.27e-16 80.5
Msa0276200 MtrunA17_Chr6g0465511 20.561 428 280 13 87 471 59 469 6.44e-16 80.5
Msa0276200 MtrunA17_Chr3g0101651 21.024 371 248 10 146 484 128 485 8.02e-16 80.1
Msa0276200 MtrunA17_Chr4g0035921 21.212 429 286 11 87 471 61 481 8.30e-16 80.1
Msa0276200 MtrunA17_Chr4g0047661 22.170 424 281 13 87 471 72 485 8.74e-16 80.1
Msa0276200 MtrunA17_Chr5g0446101 23.026 304 200 6 204 484 1 293 9.59e-16 78.2
Msa0276200 MtrunA17_Chr2g0280261 22.069 435 283 13 87 484 59 474 1.37e-15 79.3
Msa0276200 MtrunA17_Chr5g0430081 21.749 423 282 13 87 471 59 470 1.42e-15 79.3
Msa0276200 MtrunA17_Chr4g0058281 21.296 432 289 15 83 474 64 484 2.62e-15 78.6
Msa0276200 MtrunA17_Chr3g0101821 19.477 421 292 11 87 471 60 469 2.77e-15 78.2
Msa0276200 MtrunA17_Chr8g0339311 23.624 436 268 15 85 467 65 488 2.78e-15 78.6
Msa0276200 MtrunA17_Chr5g0430031 19.952 416 298 11 87 471 61 472 3.04e-15 78.2
Msa0276200 MtrunA17_Chr3g0101801 20.230 435 297 15 87 484 67 488 3.24e-15 78.2
Msa0276200 MtrunA17_Chr7g0227281 22.850 407 256 14 132 497 104 493 3.26e-15 78.2
Msa0276200 MtrunA17_Chr1g0162801 21.918 438 290 14 87 486 62 485 3.90e-15 77.8
Msa0276200 MtrunA17_Chr4g0017411 22.302 417 262 13 87 467 55 445 5.28e-15 77.4
Msa0276200 MtrunA17_Chr7g0265611 25.070 359 230 12 146 472 135 486 5.55e-15 77.4
Msa0276200 MtrunA17_Chr8g0339331 23.598 428 262 15 94 471 72 484 6.60e-15 77.0
Msa0276200 MtrunA17_Chr8g0334941 25.225 333 177 12 178 471 2 301 7.02e-15 75.9
Msa0276200 MtrunA17_Chr1g0163391 21.898 411 264 14 131 497 104 501 7.28e-15 77.0
Msa0276200 MtrunA17_Chr6g0449331 21.117 412 274 13 132 497 108 514 1.15e-14 76.3
Msa0276200 MtrunA17_Chr1g0163351 22.170 424 249 15 132 497 104 504 1.34e-14 76.3
Msa0276200 MtrunA17_Chr8g0372251 23.054 334 223 10 144 448 122 450 1.42e-14 76.3
Msa0276200 MtrunA17_Chr3g0101811 19.556 450 295 17 87 484 62 496 1.47e-14 76.3
Msa0276200 MtrunA17_Chr4g0020041 24.062 320 200 10 208 497 186 492 1.95e-14 75.9
Msa0276200 MtrunA17_Chr8g0357421 20.370 432 298 11 87 484 62 481 2.34e-14 75.5
Msa0276200 MtrunA17_Chr8g0381541 25.806 248 142 8 251 470 229 462 2.96e-14 75.1
Msa0276200 MtrunA17_Chr6g0449361 22.462 463 281 22 80 483 49 492 3.15e-14 75.1
Msa0276200 MtrunA17_Chr1g0183611 22.362 398 245 15 132 479 23 406 3.47e-14 74.3
Msa0276200 MtrunA17_Chr4g0011981 23.404 423 274 13 87 471 54 464 3.99e-14 74.7
Msa0276200 MtrunA17_Chr6g0484841 20.979 429 294 10 87 480 61 479 4.12e-14 74.7
Msa0276200 MtrunA17_Chr5g0430071 24.691 324 205 9 204 494 36 353 4.18e-14 73.9
Msa0276200 MtrunA17_Chr4g0004481 21.516 409 261 13 132 498 102 492 4.21e-14 74.7
Msa0276200 MtrunA17_Chr4g0046351 22.222 423 269 12 94 471 67 474 4.84e-14 74.3
Msa0276200 MtrunA17_Chr7g0248991 25.797 345 199 15 132 436 40 367 5.21e-14 73.6
Msa0276200 MtrunA17_Chr8g0381571 25.714 245 140 8 251 467 229 459 6.79e-14 73.9
Msa0276200 MtrunA17_Chr8g0387101 24.523 367 221 13 146 471 125 476 6.89e-14 73.9
Msa0276200 MtrunA17_Chr1g0167321 21.379 435 296 13 87 486 59 482 7.81e-14 73.9
Msa0276200 MtrunA17_Chr2g0321171 25.410 244 140 7 248 467 241 466 8.34e-14 73.6
Msa0276200 MtrunA17_Chr6g0451741 23.982 442 266 16 90 474 89 517 8.59e-14 73.9
Msa0276200 MtrunA17_Chr5g0403931 24.919 309 164 10 211 472 168 455 8.99e-14 73.6
Msa0276200 MtrunA17_Chr1g0174451 23.349 424 256 16 94 467 68 472 9.70e-14 73.6
Msa0276200 MtrunA17_Chr1g0184461 21.007 457 291 14 82 493 58 489 1.00e-13 73.6
Msa0276200 MtrunA17_Chr3g0113321 25.000 296 174 8 229 497 193 467 1.06e-13 73.2
Msa0276200 MtrunA17_Chr2g0280121 23.596 356 232 9 146 467 127 476 1.09e-13 73.2
Msa0276200 MtrunA17_Chr4g0046331 22.353 425 268 12 94 471 67 476 1.13e-13 73.2
Msa0276200 MtrunA17_Chr1g0151221 22.669 472 269 16 90 490 66 512 1.17e-13 73.2
Msa0276200 MtrunA17_Chr5g0431591 21.311 305 209 8 204 484 1 298 1.26e-13 72.0
Msa0276200 MtrunA17_Chr3g0101741 20.000 365 250 9 146 484 55 403 1.55e-13 72.4
Msa0276200 MtrunA17_Chr4g0052861 21.853 421 270 14 87 467 56 457 1.60e-13 72.8
Msa0276200 MtrunA17_Chr7g0235551 24.839 310 188 11 205 477 181 482 1.70e-13 72.8
Msa0276200 MtrunA17_Chr1g0163371 23.902 205 119 5 325 497 22 221 1.78e-13 69.7
Msa0276200 MtrunA17_Chr6g0466941 22.300 426 270 15 94 467 67 483 1.86e-13 72.8
Msa0276200 MtrunA17_Chr5g0430131 22.680 291 200 5 204 471 183 471 2.08e-13 72.4
Msa0276200 MtrunA17_Chr3g0101831 19.437 355 246 9 146 471 127 470 2.89e-13 72.0
Msa0276200 MtrunA17_Chr8g0380501 21.707 410 258 13 132 497 100 490 3.10e-13 72.0
Msa0276200 MtrunA17_Chr1g0156101 21.803 477 296 19 81 492 36 500 3.12e-13 72.0
Msa0276200 MtrunA17_Chr4g0047641 21.789 436 275 15 83 471 68 484 3.21e-13 72.0
Msa0276200 MtrunA17_Chr7g0225531 27.407 270 145 11 232 467 228 480 3.23e-13 72.0
Msa0276200 MtrunA17_Chr4g0011901 21.957 419 283 11 88 471 55 464 3.24e-13 71.6
Msa0276200 MtrunA17_Chr5g0395321 22.488 418 273 16 87 471 66 465 3.49e-13 72.0
Msa0276200 MtrunA17_Chr8g0380471 22.194 392 244 12 135 496 114 474 4.31e-13 71.2
Msa0276200 MtrunA17_Chr1g0163451 26.108 203 113 5 327 497 326 523 5.01e-13 71.2
Msa0276200 MtrunA17_Chr8g0344151 21.596 426 280 13 87 471 60 472 6.28e-13 70.9
Msa0276200 MtrunA17_Chr6g0472311 22.120 434 275 15 87 471 65 484 8.29e-13 70.5
Msa0276200 MtrunA17_Chr8g0390871 26.705 176 105 3 327 480 28 201 8.82e-13 68.2
Msa0276200 MtrunA17_Chr5g0401691 22.067 358 220 10 146 467 140 474 1.03e-12 70.5
Msa0276200 MtrunA17_Chr1g0163211 21.836 403 259 13 132 493 109 496 1.23e-12 70.1
Msa0276200 MtrunA17_Chr7g0227291 21.867 407 260 14 132 497 104 493 1.31e-12 70.1
Msa0276200 MtrunA17_Chr6g0466901 22.460 374 234 14 146 474 125 487 1.48e-12 69.7
Msa0276200 MtrunA17_Chr1g0163421 24.409 254 147 8 277 497 298 539 1.58e-12 69.7
Msa0276200 MtrunA17_Chr3g0135841 21.692 461 262 15 90 472 69 508 1.63e-12 69.7
Msa0276200 MtrunA17_Chr1g0163461 26.108 203 113 5 327 497 321 518 1.78e-12 69.7
Msa0276200 MtrunA17_Chr2g0280081 23.099 342 216 10 166 467 136 470 1.92e-12 70.1
Msa0276200 MtrunA17_Chr2g0280081 28.261 184 102 5 313 467 789 971 4.22e-11 65.9
Msa0276200 MtrunA17_Chr8g0387001 23.106 264 158 5 263 493 249 500 2.03e-12 69.3
Msa0276200 MtrunA17_Chr6g0451641 21.944 360 236 10 146 467 130 482 2.13e-12 69.3
Msa0276200 MtrunA17_Chr1g0200951 21.707 410 257 14 103 467 105 495 2.46e-12 69.3
Msa0276200 MtrunA17_Chr6g0451781 26.460 291 162 9 221 467 240 522 2.67e-12 68.9
Msa0276200 MtrunA17_Chr4g0046681 29.586 169 94 4 323 467 29 196 2.71e-12 66.6
Msa0276200 MtrunA17_Chr6g0463621 26.425 193 113 5 326 493 2 190 2.76e-12 65.9
Msa0276200 MtrunA17_Chr8g0362481 24.367 316 194 11 190 467 94 402 2.99e-12 68.6
Msa0276200 MtrunA17_Chr3g0086691 21.311 366 236 13 146 471 121 474 3.99e-12 68.6
Msa0276200 MtrunA17_Chr6g0449381 20.050 399 262 13 131 483 107 494 4.38e-12 68.2
Msa0276200 MtrunA17_Chr3g0107501 21.168 274 174 7 224 467 186 447 4.78e-12 68.2
Msa0276200 MtrunA17_Chr5g0431501 22.689 357 234 13 147 471 124 470 4.96e-12 68.2
Msa0276200 MtrunA17_Chr5g0431461 22.689 357 234 13 147 471 124 470 4.96e-12 68.2
Msa0276200 MtrunA17_Chr7g0246151 21.528 432 275 14 87 472 58 471 5.78e-12 67.8
Msa0276200 MtrunA17_Chr8g0364651 26.087 184 108 4 316 472 287 469 6.83e-12 67.8
Msa0276200 MtrunA17_Chr5g0445371 25.346 217 140 7 258 471 1 198 6.97e-12 65.5
Msa0276200 MtrunA17_Chr2g0310381 21.528 432 270 16 87 471 52 461 7.78e-12 67.4
Msa0276200 MtrunA17_Chr6g0484811 21.040 423 286 12 87 471 61 473 7.87e-12 67.4
Msa0276200 MtrunA17_Chr3g0101611 20.941 425 277 12 87 470 62 468 1.00e-11 67.0
Msa0276200 MtrunA17_Chr8g0362701 22.434 419 267 15 94 467 66 471 1.20e-11 67.0
Msa0276200 MtrunA17_Chr1g0205361 24.031 258 158 10 240 471 220 465 1.23e-11 67.0
Msa0276200 MtrunA17_Chr4g0039901 20.792 404 260 11 87 448 59 444 1.30e-11 66.6
Msa0276200 MtrunA17_Chr5g0430101 21.412 425 279 16 87 471 60 469 1.36e-11 66.6
Msa0276200 MtrunA17_Chr4g0011871 21.065 432 282 13 84 471 49 465 1.44e-11 66.6
Msa0276200 MtrunA17_Chr7g0255131 23.077 416 258 13 99 467 76 476 1.56e-11 66.6
Msa0276200 MtrunA17_Chr1g0160861 23.432 303 190 11 197 471 18 306 2.24e-11 65.1
Msa0276200 MtrunA17_Chr8g0344181 21.362 426 281 14 87 471 62 474 2.65e-11 65.9
Msa0276200 MtrunA17_Chr5g0430091 22.337 291 202 4 204 471 183 472 2.66e-11 65.9
Msa0276200 MtrunA17_Chr6g0451751 24.159 327 193 12 195 482 189 499 2.81e-11 65.9
Msa0276200 MtrunA17_Chr7g0258211 21.451 317 205 9 187 467 168 476 2.84e-11 65.9
Msa0276200 MtrunA17_Chr2g0293411 22.038 422 262 16 86 470 69 460 3.27e-11 65.5
Msa0276200 MtrunA17_Chr5g0419691 22.742 299 196 7 201 471 173 464 3.43e-11 65.5
Msa0276200 MtrunA17_Chr4g0044851 21.628 430 264 11 85 471 45 444 3.74e-11 65.1
Msa0276200 MtrunA17_Chr8g0369791 20.913 416 247 11 85 455 45 423 4.14e-11 65.1
Msa0276200 MtrunA17_Chr1g0171041 22.789 294 162 8 228 488 236 497 5.39e-11 64.7
Msa0276200 MtrunA17_Chr6g0451691 23.839 323 191 11 194 474 190 499 5.80e-11 64.7
Msa0276200 MtrunA17_Chr1g0200961 21.547 362 239 9 144 471 115 465 6.27e-11 64.7
Msa0276200 MtrunA17_Chr1g0160851 22.000 300 198 8 197 471 177 465 6.61e-11 64.7
Msa0276200 MtrunA17_Chr5g0395331 23.779 307 195 10 193 471 177 472 7.72e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276200 AT3G14690.1 48.069 518 239 6 5 498 1 512 0.0 520
Msa0276200 AT3G14690.2 48.069 518 239 6 5 498 36 547 0.0 520
Msa0276200 AT3G14610.1 49.200 500 225 5 22 498 19 512 6.39e-180 515
Msa0276200 AT3G14620.1 50.100 499 216 6 22 496 24 513 3.41e-174 500
Msa0276200 AT3G14630.1 47.750 511 235 5 14 498 4 508 6.50e-174 499
Msa0276200 AT3G14640.1 49.000 500 221 6 25 498 23 514 2.08e-173 498
Msa0276200 AT3G14630.2 47.750 511 235 5 14 498 59 563 2.24e-173 500
Msa0276200 AT3G14660.1 47.782 496 231 4 25 498 23 512 3.69e-173 498
Msa0276200 AT3G14680.1 48.387 496 228 4 25 498 23 512 6.87e-173 497
Msa0276200 AT3G14640.2 49.000 500 221 6 25 498 45 536 8.85e-173 498
Msa0276200 AT3G14650.1 47.379 496 233 4 25 498 23 512 6.37e-171 492
Msa0276200 AT2G26710.1 35.783 517 289 5 11 498 13 515 2.60e-124 373
Msa0276200 AT3G14660.2 49.432 352 151 3 168 498 21 366 2.68e-122 362
Msa0276200 AT3G14660.3 47.059 340 172 3 25 362 23 356 7.68e-112 337
Msa0276200 AT2G46960.2 35.743 498 279 10 30 496 28 515 3.03e-101 314
Msa0276200 AT2G46950.1 35.130 501 286 9 25 498 82 570 6.05e-100 312
Msa0276200 AT1G75130.1 33.199 497 292 7 30 500 23 505 4.21e-96 300
Msa0276200 AT4G27710.1 33.398 518 304 7 11 496 7 515 1.09e-95 299
Msa0276200 AT5G38450.1 34.170 518 295 12 11 496 11 514 1.43e-87 278
Msa0276200 AT1G67110.1 32.443 524 310 11 1 496 1 508 6.22e-82 263
Msa0276200 AT2G46960.1 36.364 396 216 7 128 496 13 399 3.35e-81 258
Msa0276200 AT5G24910.1 30.912 537 322 12 1 499 6 531 1.36e-74 245
Msa0276200 AT5G52400.1 28.654 520 318 12 12 496 16 517 1.02e-73 242
Msa0276200 AT5G24900.1 31.000 500 297 10 36 498 37 525 1.74e-72 239
Msa0276200 AT1G17060.1 38.182 275 169 1 16 289 16 290 1.78e-72 233
Msa0276200 AT5G24900.2 33.504 391 224 7 136 498 26 408 1.59e-65 218
Msa0276200 AT2G46950.2 34.412 340 205 8 25 358 82 409 5.03e-57 196
Msa0276200 AT4G27710.2 32.312 359 223 6 11 358 7 356 5.98e-54 186
Msa0276200 AT5G38450.2 32.312 359 221 9 11 358 11 358 4.86e-45 162
Msa0276200 AT1G67110.2 30.081 369 238 8 1 362 1 356 3.24e-39 146
Msa0276200 AT5G24910.2 27.128 376 247 10 1 358 6 372 5.86e-31 124
Msa0276200 AT3G53130.1 25.390 449 264 16 94 493 108 534 9.25e-27 114
Msa0276200 AT1G31800.1 26.225 408 242 15 108 473 153 543 1.02e-26 114
Msa0276200 AT4G13310.1 24.832 447 253 14 94 492 63 474 2.37e-26 112
Msa0276200 AT4G13290.1 24.541 436 260 12 94 492 64 467 2.39e-25 109
Msa0276200 AT3G48300.1 24.029 412 262 13 90 467 56 450 4.04e-25 108
Msa0276200 AT3G48300.2 24.029 412 262 13 90 467 58 452 4.10e-25 108
Msa0276200 AT3G48310.1 21.256 414 279 9 94 475 63 461 4.22e-23 102
Msa0276200 AT4G15110.1 25.123 406 222 13 140 474 159 553 7.55e-22 99.4
Msa0276200 AT3G48270.1 22.871 411 270 10 94 472 62 457 2.15e-21 97.4
Msa0276200 AT5G24950.1 23.095 420 269 12 87 467 56 460 2.75e-21 97.1
Msa0276200 AT1G24540.1 22.573 443 291 13 100 496 82 518 3.07e-21 97.4
Msa0276200 AT2G21910.1 23.640 478 287 19 79 497 47 505 2.76e-20 94.4
Msa0276200 AT1G11680.1 26.611 357 190 12 154 471 135 458 4.87e-20 93.2
Msa0276200 AT3G48280.1 22.410 415 276 10 89 471 56 456 2.33e-19 91.3
Msa0276200 AT2G30770.1 24.757 412 257 11 94 467 64 460 3.32e-19 90.9
Msa0276200 AT3G48290.1 22.651 415 274 10 89 471 59 458 5.16e-19 90.1
Msa0276200 AT1G13080.1 23.481 362 229 13 146 472 120 468 3.39e-18 87.8
Msa0276200 AT1G57750.1 24.731 465 285 18 80 497 49 495 5.21e-18 87.0
Msa0276200 AT3G26125.1 21.598 463 296 15 90 493 73 527 6.39e-18 87.0
Msa0276200 AT1G13080.2 23.151 311 196 9 195 472 50 350 9.37e-18 85.5
Msa0276200 AT4G31500.1 24.225 355 219 13 149 467 122 462 1.58e-17 85.9
Msa0276200 AT5G04330.1 22.642 424 282 11 87 471 56 472 2.24e-17 85.1
Msa0276200 AT3G48320.1 20.732 410 278 9 94 471 63 457 2.39e-17 85.1
Msa0276200 AT3G48520.1 22.164 379 234 12 145 482 123 481 3.52e-17 84.7
Msa0276200 AT3G25180.1 23.192 401 254 11 108 467 86 473 4.37e-17 84.3
Msa0276200 AT3G48290.2 22.633 433 278 11 89 471 59 484 4.52e-17 84.3
Msa0276200 AT3G26230.1 21.543 311 204 7 195 471 163 467 1.22e-16 82.8
Msa0276200 AT3G26160.1 21.006 338 222 10 146 448 119 446 1.61e-16 82.4
Msa0276200 AT3G26280.1 22.626 358 230 10 146 467 121 467 1.91e-16 82.4
Msa0276200 AT3G26280.2 22.905 358 229 10 146 467 138 484 2.48e-16 82.0
Msa0276200 AT3G26170.1 20.507 434 290 14 87 477 54 475 3.04e-16 81.6
Msa0276200 AT3G26150.1 21.327 422 279 14 88 467 55 465 4.96e-16 81.3
Msa0276200 AT5G09970.1 21.951 410 256 13 103 467 112 502 7.62e-16 80.5
Msa0276200 AT3G26180.1 20.276 434 291 14 87 477 54 475 7.74e-16 80.5
Msa0276200 AT4G37430.1 23.864 440 258 19 85 470 46 462 8.26e-16 80.5
Msa0276200 AT1G13140.2 20.642 436 281 11 100 495 85 495 1.06e-15 80.1
Msa0276200 AT4G39510.1 27.076 277 159 9 255 497 237 504 1.11e-15 80.1
Msa0276200 AT5G52320.1 23.864 264 159 6 277 498 239 502 1.40e-15 79.7
Msa0276200 AT4G13770.1 21.622 444 285 14 81 471 34 467 1.47e-15 79.7
Msa0276200 AT5G24960.1 22.717 427 280 14 87 476 57 470 1.70e-15 79.3
Msa0276200 AT3G26190.1 23.009 452 290 19 89 498 54 489 1.80e-15 79.3
Msa0276200 AT5G67310.1 23.580 352 227 11 146 470 133 469 1.94e-15 79.3
Msa0276200 AT4G32170.1 21.868 439 279 18 108 497 79 502 1.99e-15 79.3
Msa0276200 AT5G35715.1 22.779 439 279 19 103 498 6 427 2.43e-15 78.6
Msa0276200 AT5G52320.2 24.701 251 145 7 277 485 239 487 2.65e-15 79.0
Msa0276200 AT1G13140.1 18.694 444 306 12 100 495 85 521 3.36e-15 78.6
Msa0276200 AT1G13150.1 21.053 418 270 13 129 495 106 514 3.73e-15 78.6
Msa0276200 AT5G44620.1 22.596 416 258 15 79 448 62 459 5.42e-15 77.8
Msa0276200 AT4G37340.1 25.000 360 212 12 146 470 122 458 5.68e-15 77.8
Msa0276200 AT2G26170.1 23.543 446 254 16 90 472 72 493 6.29e-15 77.8
Msa0276200 AT5G10600.1 23.832 428 260 17 87 470 71 476 6.54e-15 77.8
Msa0276200 AT1G11610.2 21.564 422 270 13 94 473 64 466 6.62e-15 77.4
Msa0276200 AT1G11610.1 21.564 422 270 13 94 473 64 466 7.69e-15 77.4
Msa0276200 AT3G26830.1 19.668 422 284 14 88 467 53 461 7.81e-15 77.4
Msa0276200 AT2G26170.2 23.557 433 244 16 103 472 2 410 7.84e-15 77.0
Msa0276200 AT4G37400.1 24.138 377 221 12 130 467 106 456 8.65e-15 77.0
Msa0276200 AT4G19230.2 20.609 427 261 12 85 469 44 434 1.28e-14 76.6
Msa0276200 AT4G36220.1 22.865 363 239 9 144 471 127 483 1.32e-14 76.6
Msa0276200 AT2G27690.1 22.248 427 266 15 108 486 76 484 1.56e-14 76.3
Msa0276200 AT2G42250.1 23.969 388 242 11 120 467 103 477 1.80e-14 76.3
Msa0276200 AT3G10560.1 22.588 425 268 15 86 467 72 478 2.71e-14 75.9
Msa0276200 AT4G19230.1 20.471 425 260 12 85 467 44 432 5.71e-14 74.3
Msa0276200 AT1G13100.1 20.335 418 277 12 94 467 56 461 8.19e-14 73.9
Msa0276200 AT2G30750.1 23.288 292 186 6 204 467 179 460 9.28e-14 73.9
Msa0276200 AT2G40890.1 20.465 430 290 9 78 467 42 459 9.45e-14 73.9
Msa0276200 AT1G74110.1 23.445 418 248 18 103 467 107 505 9.56e-14 73.9
Msa0276200 AT4G20240.1 22.911 371 238 10 86 421 56 413 1.04e-13 73.6
Msa0276200 AT1G65340.1 23.358 274 166 7 269 498 230 503 1.35e-13 73.6
Msa0276200 AT2G23180.1 23.053 321 195 9 214 497 206 511 2.21e-13 72.8
Msa0276200 AT5G42590.1 21.875 320 195 9 201 482 175 477 2.37e-13 72.8
Msa0276200 AT5G36220.1 23.120 359 219 12 146 470 129 464 2.44e-13 72.8
Msa0276200 AT4G13310.2 24.501 351 194 13 94 396 63 390 2.47e-13 72.0
Msa0276200 AT3G56630.1 23.844 411 235 18 129 485 97 483 2.74e-13 72.4
Msa0276200 AT1G34540.1 24.566 403 234 17 136 490 109 489 3.02e-13 72.4
Msa0276200 AT4G37330.1 24.485 388 217 16 127 470 100 455 3.48e-13 72.0
Msa0276200 AT1G66540.1 23.889 360 216 10 147 470 8 345 5.52e-13 70.9
Msa0276200 AT5G45340.1 19.580 429 259 11 85 467 44 432 7.14e-13 71.2
Msa0276200 AT2G25160.1 25.497 302 180 8 182 446 165 458 7.30e-13 71.2
Msa0276200 AT2G24180.1 22.565 421 273 17 87 467 60 467 7.65e-13 71.2
Msa0276200 AT4G37410.1 23.256 430 269 17 79 467 47 456 7.89e-13 71.2
Msa0276200 AT5G45340.2 19.580 429 259 11 85 467 44 432 8.01e-13 70.9
Msa0276200 AT1G11600.1 24.113 282 178 8 221 467 196 476 1.64e-12 70.1
Msa0276200 AT4G37370.1 23.889 360 215 12 146 470 122 457 2.37e-12 69.7
Msa0276200 AT4G15350.1 23.546 361 221 14 146 467 125 469 2.88e-12 69.3
Msa0276200 AT5G47990.1 22.295 305 196 9 195 467 180 475 3.36e-12 68.9
Msa0276200 AT5G07990.1 21.502 293 180 9 221 472 188 471 4.21e-12 68.9
Msa0276200 AT2G46660.1 22.906 406 249 17 103 467 113 495 4.42e-12 68.9
Msa0276200 AT3G26310.1 20.476 420 286 12 89 471 56 464 4.84e-12 68.6
Msa0276200 AT1G50520.1 21.508 358 231 10 146 467 135 478 4.94e-12 68.6
Msa0276200 AT3G26220.1 20.128 313 202 9 195 470 166 467 6.10e-12 68.2
Msa0276200 AT2G45970.1 26.966 178 89 4 325 464 302 476 6.20e-12 68.2
Msa0276200 AT1G01600.1 21.190 420 252 12 136 497 114 512 6.21e-12 68.6
Msa0276200 AT3G26180.2 20.921 239 157 6 263 477 111 341 6.37e-12 67.4
Msa0276200 AT1G66540.2 24.333 300 179 8 201 470 5 286 6.39e-12 67.4
Msa0276200 AT3G26200.1 20.879 455 300 18 87 498 52 489 6.94e-12 68.2
Msa0276200 AT3G20950.1 24.839 310 182 12 195 467 184 479 1.38e-11 67.4
Msa0276200 AT5G06900.1 19.410 407 285 10 94 467 65 461 1.57e-11 67.0
Msa0276200 AT3G26300.1 21.067 356 235 11 149 471 123 465 1.70e-11 67.0
Msa0276200 AT5G36220.2 22.549 306 188 9 195 470 32 318 3.29e-11 65.5
Msa0276200 AT3G61040.1 21.528 432 266 15 87 470 57 463 4.47e-11 65.5
Msa0276200 AT5G25120.1 20.952 420 282 13 89 471 55 461 7.15e-11 64.7
Msa0276200 AT3G20140.1 23.432 303 191 10 195 467 180 471 7.15e-11 65.1
Msa0276200 AT1G13110.1 18.820 356 246 10 146 467 121 467 7.52e-11 64.7

Find 134 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTATTCTTTACTTAATT+TGG 0.084119 2_3:-8456865 Msa0276200:five_prime_UTR
TGAAATCTTTAATCCCTTTA+TGG 0.123242 2_3:-8455705 Msa0276200:CDS
AGTAAAGAATAGAGAATTTA+TGG 0.135364 2_3:+8456873 None:intergenic
TGAATAATTAAATTTAAATT+TGG 0.150818 2_3:+8454129 None:intergenic
TGAATAGTCATTACTAAATT+TGG 0.170025 2_3:+8454507 None:intergenic
AGCCATGGCTTTATAGAATT+TGG 0.170075 2_3:+8456953 None:intergenic
AATTTGAAAATCTCATATTT+TGG 0.203025 2_3:+8456226 None:intergenic
TTCCATGATCTCTAATTTCT+TGG 0.206424 2_3:+8455436 None:intergenic
ACAATAATATGCGTTGTTAA+AGG 0.213081 2_3:-8454078 Msa0276200:three_prime_UTR
TTATGTTGAAGCAAAATAAT+TGG 0.233112 2_3:+8454747 None:intergenic
CAACAACTTGTTCAAATTTA+CGG 0.247474 2_3:-8456525 Msa0276200:intron
CAGGTCCATGGGTTTGGATT+TGG 0.260034 2_3:+8456584 None:intergenic
GTTGGCAAAGATATAAAGTT+TGG 0.266128 2_3:-8454807 Msa0276200:CDS
CCATCATTGGCTATAAATTA+TGG 0.266604 2_3:-8456780 Msa0276200:CDS
CTACTTCAACTATGCTTGTT+TGG 0.272405 2_3:-8455338 Msa0276200:CDS
AAATCTACCATTTGTTGCTT+TGG 0.272507 2_3:+8454662 None:intergenic
ATGAAGTGCGTGACACTTAA+TGG 0.290423 2_3:-8454193 Msa0276200:three_prime_UTR
TCATGGAAACAACAAGAATA+TGG 0.293660 2_3:-8455421 Msa0276200:CDS
AAGAGCTTCTCTAGCCTCTT+TGG 0.295504 2_3:+8456687 None:intergenic
CTTGCACGTTCTTGCCAATC+AGG 0.309729 2_3:+8455291 None:intergenic
ATCCGACAGGTCCATGGGTT+TGG 0.318750 2_3:+8456578 None:intergenic
TTCAACATAACAATGAACTA+TGG 0.332986 2_3:-8454734 Msa0276200:CDS
GGTTCCATTTCTCTGCTTGT+AGG 0.343300 2_3:+8456801 None:intergenic
AAATTTGGATAACATATAGA+TGG 0.345980 2_3:+8454144 None:intergenic
ACACATGGAGAGTGCTGAAT+TGG 0.369725 2_3:-8456722 Msa0276200:CDS
CAGGGAAGAATCCTTTCATT+TGG 0.370208 2_3:-8456330 Msa0276200:CDS
GTTATTTCTCGAAACGCATT+TGG 0.377764 2_3:-8455802 Msa0276200:CDS
ATCACCTACAAGCAGAGAAA+TGG 0.379501 2_3:-8456805 Msa0276200:exon
AAGAATCCTTTCATTTGGTC+TGG 0.379513 2_3:-8456325 Msa0276200:CDS
TGAACAAGTTGTTGAATGTA+TGG 0.379843 2_3:+8456534 None:intergenic
GCCACTGAGAATGACTTATT+AGG 0.381371 2_3:-8455480 Msa0276200:CDS
GATTAGTCTTACCTCCATAA+AGG 0.389113 2_3:+8455691 None:intergenic
CATCACTGTAACACTTGGTT+TGG 0.392948 2_3:-8456748 Msa0276200:CDS
GGAGAGTGCTGAATTGGATT+TGG 0.400703 2_3:-8456716 Msa0276200:CDS
ATTCTTATAGACTTGTGCTT+GGG 0.400709 2_3:-8456641 Msa0276200:CDS
ACTTGTGCTTGGGGACTTGA+AGG 0.409785 2_3:-8456631 Msa0276200:CDS
CATGATCTCTAATTTCTTGG+TGG 0.411298 2_3:+8455439 None:intergenic
TGCAAGTTATTCTACTTGGC+AGG 0.413849 2_3:-8455369 Msa0276200:CDS
ATTAGTCTTACCTCCATAAA+GGG 0.413978 2_3:+8455692 None:intergenic
CACCAAGAAATTAGAGATCA+TGG 0.420317 2_3:-8455438 Msa0276200:CDS
AAAAGTGGAGAAAGCATAGA+AGG 0.422271 2_3:-8456171 Msa0276200:CDS
CAGAGAAATGGAACCATCAT+TGG 0.422476 2_3:-8456793 Msa0276200:exon
GCACTGATATGATTAGCAAA+TGG 0.429712 2_3:-8455897 Msa0276200:CDS
AGATTGTATCCACCTGCATT+TGG 0.432958 2_3:-8454843 Msa0276200:CDS
CTTGAAGGATTCATATAAGA+TGG 0.437098 2_3:-8456616 Msa0276200:CDS
TTCACTATTGGAAGCAAAGA+TGG 0.441429 2_3:-8454589 Msa0276200:CDS
TGCTAAACGTTGAGTACAAA+TGG 0.454479 2_3:+8454271 None:intergenic
TAGAACCTCGTACAAAATCA+TGG 0.457849 2_3:+8454866 None:intergenic
TCAACATAACAATGAACTAT+GGG 0.459154 2_3:-8454733 Msa0276200:CDS
CACTGATATGATTAGCAAAT+GGG 0.461038 2_3:-8455896 Msa0276200:CDS
AATGACTATTCAGCCAGAAA+AGG 0.465992 2_3:-8454496 Msa0276200:CDS
CATGGAAACAACAAGAATAT+GGG 0.467549 2_3:-8455420 Msa0276200:CDS
CCATAATTTATAGCCAATGA+TGG 0.477451 2_3:+8456780 None:intergenic
TGAGCGCATTGGTGTGGACA+TGG 0.482172 2_3:+8457009 None:intergenic
GGAATTTCCAAAGCAACAAA+TGG 0.494078 2_3:-8454669 Msa0276200:CDS
CAAGAGAGAGAAAGCAATGA+AGG 0.494463 2_3:-8455511 Msa0276200:CDS
TGTTGAGTAGGTACCCTGAT+TGG 0.495576 2_3:-8455305 Msa0276200:CDS
TATAGAATTTGGTAAGGTGT+AGG 0.497097 2_3:+8456964 None:intergenic
GGACAATGATATTGTTGAGT+AGG 0.497423 2_3:-8455317 Msa0276200:CDS
TTTGGAGTATGAGCATAGGT+TGG 0.499601 2_3:+8454525 None:intergenic
GTCACGCACTTCATGACAAA+TGG 0.501275 2_3:+8454202 None:intergenic
GATCAGGTGAAATAGACATA+TGG 0.505098 2_3:-8455852 Msa0276200:CDS
GGAATGCAAGTTATTCTACT+TGG 0.506190 2_3:-8455373 Msa0276200:CDS
TTTGGAAGTAGTTACGAAGA+AGG 0.507891 2_3:-8455784 Msa0276200:CDS
TATATCATCCGACAGGTCCA+TGG 0.509546 2_3:+8456572 None:intergenic
GTGCAACTTGTGAGGAAACT+TGG 0.512966 2_3:+8455916 None:intergenic
GTACAAATGGTATAGCTTAG+TGG 0.516635 2_3:+8454284 None:intergenic
ATTCCATCAGCAAATCTCTC+AGG 0.523232 2_3:+8454687 None:intergenic
CATGGAAGTACCTGCTGGAG+TGG 0.525797 2_3:-8454781 Msa0276200:CDS
AATTCTTATAGACTTGTGCT+TGG 0.528002 2_3:-8456642 Msa0276200:CDS
ATGACTATTCAGCCAGAAAA+GGG 0.530494 2_3:-8454495 Msa0276200:CDS
CACTTGGTTTGGTATACACA+TGG 0.531670 2_3:-8456737 Msa0276200:CDS
TTACGAGAACAAGGATGTAA+AGG 0.531845 2_3:-8456666 Msa0276200:CDS
TGGCTTTATAGAATTTGGTA+AGG 0.531948 2_3:+8456958 None:intergenic
AGAACCTCGTACAAAATCAT+GGG 0.532420 2_3:+8454867 None:intergenic
AAGAAAACCTCCACTCCAGC+AGG 0.537685 2_3:+8454771 None:intergenic
TTCTTATAGACTTGTGCTTG+GGG 0.541211 2_3:-8456640 Msa0276200:CDS
ATATTCATCACTGTAACACT+TGG 0.543292 2_3:-8456753 Msa0276200:CDS
AGATATAAAGTTTGGAAACA+TGG 0.544012 2_3:-8454799 Msa0276200:CDS
ACATTGTCTTCAGATGGATC+AGG 0.548886 2_3:-8455868 Msa0276200:CDS
ATGAGTCTTGAAGATGTAGT+GGG 0.555679 2_3:-8455396 Msa0276200:CDS
TTGAAGGATTCATATAAGAT+GGG 0.557633 2_3:-8456615 Msa0276200:CDS
AGAGAGAAAGCAATGAAGGC+AGG 0.558808 2_3:-8455507 Msa0276200:CDS
CTGATTGGCAAGAACGTGCA+AGG 0.559141 2_3:-8455290 Msa0276200:CDS
TTTGGTGTTACTCGATATGT+TGG 0.561527 2_3:-8454825 Msa0276200:CDS
TTGCACGTTCTTGCCAATCA+GGG 0.561601 2_3:+8455292 None:intergenic
AGAAATGAAGCATCATTCAC+TGG 0.569094 2_3:-8456896 Msa0276200:five_prime_UTR
TAAATTTGGAGTATGAGCAT+AGG 0.569435 2_3:+8454521 None:intergenic
TACCAAATTCTATAAAGCCA+TGG 0.572331 2_3:-8456955 Msa0276200:five_prime_UTR
GGTTCTGTGAGAATCAGCCT+TGG 0.573057 2_3:+8456295 None:intergenic
AACTGAGAGTGTATCAGCCA+TGG 0.573408 2_3:+8456938 None:intergenic
GAACAAGTTGTTGAATGTAT+GGG 0.574114 2_3:+8456535 None:intergenic
GCAAGTTATTCTACTTGGCA+GGG 0.574471 2_3:-8455368 Msa0276200:CDS
ATCCAAACCCATGGACCTGT+CGG 0.574897 2_3:-8456580 Msa0276200:CDS
ATATCATCCGACAGGTCCAT+GGG 0.579220 2_3:+8456573 None:intergenic
GGATTTGGTTGAAGCCAAAG+AGG 0.579833 2_3:-8456701 Msa0276200:CDS
TTTGATCTTCAAAGAGAGCA+AGG 0.580321 2_3:-8455751 Msa0276200:CDS
AACAAGTGTGAAGCACATCA+TGG 0.581609 2_3:-8454249 Msa0276200:three_prime_UTR
GAGGCAACATTGTCTTCAGA+TGG 0.583162 2_3:-8455874 Msa0276200:CDS
AATGAGTCTTGAAGATGTAG+TGG 0.583983 2_3:-8455397 Msa0276200:CDS
GAGTCTTGAAGATGTAGTGG+GGG 0.584907 2_3:-8455394 Msa0276200:CDS
AATCTTTAATCCCTTTATGG+AGG 0.588764 2_3:-8455702 Msa0276200:intron
AATCCTGAGAGATTTGCTGA+TGG 0.589596 2_3:-8454690 Msa0276200:CDS
GTTGTTCCAGACCAAATGAA+AGG 0.593714 2_3:+8456319 None:intergenic
GAGAAGCTCTTACGAGAACA+AGG 0.594560 2_3:-8456675 Msa0276200:CDS
ATGCATCCTCCTTTGAGTAG+CGG 0.597575 2_3:+8455578 None:intergenic
GGAAGCCAAATCCAAACCCA+TGG 0.601321 2_3:-8456589 Msa0276200:CDS
TAATTCACGAGGGAGAAAAG+TGG 0.601713 2_3:-8456186 Msa0276200:CDS
GGAAACATGGAAGTACCTGC+TGG 0.602391 2_3:-8454786 Msa0276200:CDS
TTTGGATAACATATAGATGG+TGG 0.607845 2_3:+8454147 None:intergenic
GAGCGCATTGGTGTGGACAT+GGG 0.608386 2_3:+8457010 None:intergenic
TGAGTCTTGAAGATGTAGTG+GGG 0.608707 2_3:-8455395 Msa0276200:CDS
CATTATTGTTGTGAGCGCAT+TGG 0.609848 2_3:+8456998 None:intergenic
TTGTTGTGAGCGCATTGGTG+TGG 0.618038 2_3:+8457003 None:intergenic
TTGGCAAGAACGTGCAAGGG+AGG 0.621711 2_3:-8455286 Msa0276200:CDS
TCATATCAGTGCAACTTGTG+AGG 0.621779 2_3:+8455908 None:intergenic
TTATACCTACCGCTACTCAA+AGG 0.629628 2_3:-8455587 Msa0276200:CDS
GGATTCATATAAGATGGGAA+AGG 0.630211 2_3:-8456610 Msa0276200:CDS
GAGGCATTATATCATCCGAC+AGG 0.634533 2_3:+8456565 None:intergenic
GGAAGTACCTGCTGGAGTGG+AGG 0.635276 2_3:-8454778 Msa0276200:CDS
CGAGTAACACCAAATGCAGG+TGG 0.637298 2_3:+8454834 None:intergenic
TAGTGGTCTTATAATTCACG+AGG 0.639438 2_3:-8456197 Msa0276200:CDS
TATCGAGTAACACCAAATGC+AGG 0.641498 2_3:+8454831 None:intergenic
TGATTGGCAAGAACGTGCAA+GGG 0.654798 2_3:-8455289 Msa0276200:CDS
AGAGAATAGAGAATGCAACA+AGG 0.661993 2_3:+8456839 None:intergenic
TACCTACCGCTACTCAAAGG+AGG 0.667366 2_3:-8455584 Msa0276200:CDS
TGATATGATTAGCAAATGGG+AGG 0.667892 2_3:-8455893 Msa0276200:CDS
CAACATAACAATGAACTATG+GGG 0.670836 2_3:-8454732 Msa0276200:CDS
AGTGGTCTTATAATTCACGA+GGG 0.680839 2_3:-8456196 Msa0276200:CDS
ACCTAATAAGTCATTCTCAG+TGG 0.687179 2_3:+8455479 None:intergenic
GAACCTCGTACAAAATCATG+GGG 0.698612 2_3:+8454868 None:intergenic
ATCCTCCTTTGAGTAGCGGT+AGG 0.699607 2_3:+8455582 None:intergenic
TTTGGTCTGGAACAACACCA+AGG 0.709600 2_3:-8456312 Msa0276200:CDS
TGAATGTATGGGATGACACG+AGG 0.718439 2_3:+8456546 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAACAATATTTTTTTG+CGG - chr2_3:8454699-8454718 Msa0276200:CDS 10.0%
!! TTAACTACATATTTATAAAT+TGG - chr2_3:8454984-8455003 Msa0276200:intron 10.0%
!! AATTACAATATAAACTTTAT+GGG + chr2_3:8456706-8456725 None:intergenic 10.0%
!! TAATTACAATATAAACTTTA+TGG + chr2_3:8456707-8456726 None:intergenic 10.0%
!!! AATTTGAAAATCTCATATTT+TGG + chr2_3:8454862-8454881 None:intergenic 15.0%
!!! ATTTTCAAATTTCTATTTAG+TGG - chr2_3:8454871-8454890 Msa0276200:CDS 15.0%
!! TTCTAATATAGTGATATATT+AGG - chr2_3:8455440-8455459 Msa0276200:CDS 15.0%
!!! AGATTTATATATTTTCCATT+TGG - chr2_3:8456440-8456459 Msa0276200:intron 15.0%
!! AGTAAAGAATAGAGAATTTA+TGG + chr2_3:8454215-8454234 None:intergenic 20.0%
!! TCTCTATTCTTTACTTAATT+TGG - chr2_3:8454220-8454239 Msa0276200:three_prime_UTR 20.0%
!!! TTTGTTTTATTAAACTCCTA+AGG + chr2_3:8454631-8454650 None:intergenic 20.0%
!! TGCATTCAATTACATTTAAA+AGG + chr2_3:8454737-8454756 None:intergenic 20.0%
!!! TTTTAAATGTAATTGAATGC+AGG - chr2_3:8454736-8454755 Msa0276200:CDS 20.0%
!! TTTAAATGTAATTGAATGCA+GGG - chr2_3:8454737-8454756 Msa0276200:CDS 20.0%
!!! TGACTATTATTTTTACTTGT+AGG - chr2_3:8455474-8455493 Msa0276200:CDS 20.0%
!!! TCAAAAGATGCAATTTTTAA+AGG + chr2_3:8455928-8455947 None:intergenic 20.0%
!!! TTCTTTTTGTTTTAGGAAAT+CGG - chr2_3:8456098-8456117 Msa0276200:intron 20.0%
!!! TGCAATTGTTTTTTAAAACT+TGG + chr2_3:8456127-8456146 None:intergenic 20.0%
!! TTATGTTGAAGCAAAATAAT+TGG + chr2_3:8456341-8456360 None:intergenic 20.0%
!!! TTTATATATTTTCCATTTGG+AGG - chr2_3:8456443-8456462 Msa0276200:intron 20.0%
!!! TTATATATTTTCCATTTGGA+GGG - chr2_3:8456444-8456463 Msa0276200:intron 20.0%
!! TGAATAGTCATTACTAAATT+TGG + chr2_3:8456581-8456600 None:intergenic 20.0%
!! AAATTTGGATAACATATAGA+TGG + chr2_3:8456944-8456963 None:intergenic 20.0%
! TTGAAGGATTCATATAAGAT+GGG - chr2_3:8454470-8454489 Msa0276200:CDS 25.0%
!! CAACAACTTGTTCAAATTTA+CGG - chr2_3:8454560-8454579 Msa0276200:CDS 25.0%
! TTTCCAGTTAGAAAAATTGA+AGG - chr2_3:8454951-8454970 Msa0276200:intron 25.0%
!! TAACCTTCAATTTTTCTAAC+TGG + chr2_3:8454957-8454976 None:intergenic 25.0%
! TGAAATCTTTAATCCCTTTA+TGG - chr2_3:8455380-8455399 Msa0276200:CDS 25.0%
!!! GAGGAAGTATTACAAATATT+TGG - chr2_3:8455818-8455837 Msa0276200:CDS 25.0%
! TTATTTAATCCTTCATAGTC+TGG + chr2_3:8455854-8455873 None:intergenic 25.0%
! TTCCTAAAACAAAAAGAACT+CGG + chr2_3:8456096-8456115 None:intergenic 25.0%
! AGATATAAAGTTTGGAAACA+TGG - chr2_3:8456286-8456305 Msa0276200:CDS 25.0%
! TTCAACATAACAATGAACTA+TGG - chr2_3:8456351-8456370 Msa0276200:intron 25.0%
! TCAACATAACAATGAACTAT+GGG - chr2_3:8456352-8456371 Msa0276200:intron 25.0%
!! TATATATTTTCCATTTGGAG+GGG - chr2_3:8456445-8456464 Msa0276200:intron 25.0%
! ACAATAATATGCGTTGTTAA+AGG - chr2_3:8457007-8457026 Msa0276200:five_prime_UTR 25.0%
TATAGAATTTGGTAAGGTGT+AGG + chr2_3:8454124-8454143 None:intergenic 30.0%
!! TGGCTTTATAGAATTTGGTA+AGG + chr2_3:8454130-8454149 None:intergenic 30.0%
TACCAAATTCTATAAAGCCA+TGG - chr2_3:8454130-8454149 Msa0276200:three_prime_UTR 30.0%
CCATAATTTATAGCCAATGA+TGG + chr2_3:8454308-8454327 None:intergenic 30.0%
! CCATCATTGGCTATAAATTA+TGG - chr2_3:8454305-8454324 Msa0276200:intron 30.0%
ATATTCATCACTGTAACACT+TGG - chr2_3:8454332-8454351 Msa0276200:intron 30.0%
AATTCTTATAGACTTGTGCT+TGG - chr2_3:8454443-8454462 Msa0276200:exon 30.0%
ATTCTTATAGACTTGTGCTT+GGG - chr2_3:8454444-8454463 Msa0276200:exon 30.0%
CTTGAAGGATTCATATAAGA+TGG - chr2_3:8454469-8454488 Msa0276200:CDS 30.0%
GAACAAGTTGTTGAATGTAT+GGG + chr2_3:8454553-8454572 None:intergenic 30.0%
TGAACAAGTTGTTGAATGTA+TGG + chr2_3:8454554-8454573 None:intergenic 30.0%
! AAGACATCTTTTATTAGCTC+TGG + chr2_3:8454814-8454833 None:intergenic 30.0%
GACACAAAATTTGAATCCTT+TGG - chr2_3:8455112-8455131 Msa0276200:intron 30.0%
AATAAGGAAGAAACAACCAA+AGG + chr2_3:8455131-8455150 None:intergenic 30.0%
CACTGATATGATTAGCAAAT+GGG - chr2_3:8455189-8455208 Msa0276200:intron 30.0%
!! ATCACTTGTCAAGTTTTGTA+GGG + chr2_3:8455263-8455282 None:intergenic 30.0%
AATCTTTAATCCCTTTATGG+AGG - chr2_3:8455383-8455402 Msa0276200:CDS 30.0%
!! ATTAGTCTTACCTCCATAAA+GGG + chr2_3:8455396-8455415 None:intergenic 30.0%
TTCCATGATCTCTAATTTCT+TGG + chr2_3:8455652-8455671 None:intergenic 30.0%
TCATGGAAACAACAAGAATA+TGG - chr2_3:8455664-8455683 Msa0276200:intron 30.0%
CATGGAAACAACAAGAATAT+GGG - chr2_3:8455665-8455684 Msa0276200:intron 30.0%
AACAAAAAACCAGACTATGA+AGG - chr2_3:8455842-8455861 Msa0276200:CDS 30.0%
!!! TACCGAGTTCTTTTTGTTTT+AGG - chr2_3:8456091-8456110 Msa0276200:intron 30.0%
GTTGGCAAAGATATAAAGTT+TGG - chr2_3:8456278-8456297 Msa0276200:CDS 30.0%
CAACATAACAATGAACTATG+GGG - chr2_3:8456353-8456372 Msa0276200:intron 30.0%
! AAATCTACCATTTGTTGCTT+TGG + chr2_3:8456426-8456445 None:intergenic 30.0%
! ATATATTTTCCATTTGGAGG+GGG - chr2_3:8456446-8456465 Msa0276200:intron 30.0%
! TAAATTTGGAGTATGAGCAT+AGG + chr2_3:8456567-8456586 None:intergenic 30.0%
! AGCATCACAGTAAGATTTTA+AGG - chr2_3:8456651-8456670 Msa0276200:CDS 30.0%
TTTGGATAACATATAGATGG+TGG + chr2_3:8456941-8456960 None:intergenic 30.0%
!! AGCCATGGCTTTATAGAATT+TGG + chr2_3:8454135-8454154 None:intergenic 35.0%
! AGAAATGAAGCATCATTCAC+TGG - chr2_3:8454189-8454208 Msa0276200:three_prime_UTR 35.0%
AGAGAATAGAGAATGCAACA+AGG + chr2_3:8454249-8454268 None:intergenic 35.0%
TTACGAGAACAAGGATGTAA+AGG - chr2_3:8454419-8454438 Msa0276200:intron 35.0%
TTCTTATAGACTTGTGCTTG+GGG - chr2_3:8454445-8454464 Msa0276200:exon 35.0%
GGATTCATATAAGATGGGAA+AGG - chr2_3:8454475-8454494 Msa0276200:CDS 35.0%
AAGAATCCTTTCATTTGGTC+TGG - chr2_3:8454760-8454779 Msa0276200:CDS 35.0%
!! TAGTGGTCTTATAATTCACG+AGG - chr2_3:8454888-8454907 Msa0276200:intron 35.0%
!! AGTGGTCTTATAATTCACGA+GGG - chr2_3:8454889-8454908 Msa0276200:intron 35.0%
! AAAAGTGGAGAAAGCATAGA+AGG - chr2_3:8454914-8454933 Msa0276200:intron 35.0%
! GCACTGATATGATTAGCAAA+TGG - chr2_3:8455188-8455207 Msa0276200:intron 35.0%
TGATATGATTAGCAAATGGG+AGG - chr2_3:8455192-8455211 Msa0276200:intron 35.0%
GATCAGGTGAAATAGACATA+TGG - chr2_3:8455233-8455252 Msa0276200:intron 35.0%
!! CATCACTTGTCAAGTTTTGT+AGG + chr2_3:8455264-8455283 None:intergenic 35.0%
!! GTTATTTCTCGAAACGCATT+TGG - chr2_3:8455283-8455302 Msa0276200:intron 35.0%
TTTGGAAGTAGTTACGAAGA+AGG - chr2_3:8455301-8455320 Msa0276200:CDS 35.0%
TTTGATCTTCAAAGAGAGCA+AGG - chr2_3:8455334-8455353 Msa0276200:CDS 35.0%
!! GATTAGTCTTACCTCCATAA+AGG + chr2_3:8455397-8455416 None:intergenic 35.0%
ACCTAATAAGTCATTCTCAG+TGG + chr2_3:8455609-8455628 None:intergenic 35.0%
CATGATCTCTAATTTCTTGG+TGG + chr2_3:8455649-8455668 None:intergenic 35.0%
CACCAAGAAATTAGAGATCA+TGG - chr2_3:8455647-8455666 Msa0276200:intron 35.0%
AATGAGTCTTGAAGATGTAG+TGG - chr2_3:8455688-8455707 Msa0276200:intron 35.0%
ATGAGTCTTGAAGATGTAGT+GGG - chr2_3:8455689-8455708 Msa0276200:intron 35.0%
GGAATGCAAGTTATTCTACT+TGG - chr2_3:8455712-8455731 Msa0276200:CDS 35.0%
CTACTTCAACTATGCTTGTT+TGG - chr2_3:8455747-8455766 Msa0276200:CDS 35.0%
GGACAATGATATTGTTGAGT+AGG - chr2_3:8455768-8455787 Msa0276200:CDS 35.0%
! GCATCTTTTGAACTCGTTTA+AGG - chr2_3:8455937-8455956 Msa0276200:intron 35.0%
!! CTTTTGAACTCGTTTAAGGT+TGG - chr2_3:8455941-8455960 Msa0276200:intron 35.0%
AGAACCTCGTACAAAATCAT+GGG + chr2_3:8456221-8456240 None:intergenic 35.0%
TAGAACCTCGTACAAAATCA+TGG + chr2_3:8456222-8456241 None:intergenic 35.0%
!! TTTGGTGTTACTCGATATGT+TGG - chr2_3:8456260-8456279 Msa0276200:CDS 35.0%
GGAATTTCCAAAGCAACAAA+TGG - chr2_3:8456416-8456435 Msa0276200:intron 35.0%
! GGGACAAAACTTTTCACTAT+TGG - chr2_3:8456484-8456503 Msa0276200:intron 35.0%
TTCACTATTGGAAGCAAAGA+TGG - chr2_3:8456496-8456515 Msa0276200:intron 35.0%
AATGACTATTCAGCCAGAAA+AGG - chr2_3:8456589-8456608 Msa0276200:CDS 35.0%
ATGACTATTCAGCCAGAAAA+GGG - chr2_3:8456590-8456609 Msa0276200:CDS 35.0%
GTACAAATGGTATAGCTTAG+TGG + chr2_3:8456804-8456823 None:intergenic 35.0%
TGCTAAACGTTGAGTACAAA+TGG + chr2_3:8456817-8456836 None:intergenic 35.0%
! GATGGTGGCAAAAATATAGA+TGG + chr2_3:8456926-8456945 None:intergenic 35.0%
CATTATTGTTGTGAGCGCAT+TGG + chr2_3:8454090-8454109 None:intergenic 40.0%
ATCACCTACAAGCAGAGAAA+TGG - chr2_3:8454280-8454299 Msa0276200:three_prime_UTR 40.0%
CAGAGAAATGGAACCATCAT+TGG - chr2_3:8454292-8454311 Msa0276200:intron 40.0%
CATCACTGTAACACTTGGTT+TGG - chr2_3:8454337-8454356 Msa0276200:intron 40.0%
!! CACTTGGTTTGGTATACACA+TGG - chr2_3:8454348-8454367 Msa0276200:intron 40.0%
TCAATCGAGCAACACTTACA+TGG - chr2_3:8454598-8454617 Msa0276200:CDS 40.0%
CAGGGAAGAATCCTTTCATT+TGG - chr2_3:8454755-8454774 Msa0276200:CDS 40.0%
GTTGTTCCAGACCAAATGAA+AGG + chr2_3:8454769-8454788 None:intergenic 40.0%
TAATTCACGAGGGAGAAAAG+TGG - chr2_3:8454899-8454918 Msa0276200:intron 40.0%
! CTTGCACAAGTGTATTTTGC+AGG + chr2_3:8455041-8455060 None:intergenic 40.0%
CCATGATCTGTGGTGTAATA+AGG + chr2_3:8455147-8455166 None:intergenic 40.0%
CCTTATTACACCACAGATCA+TGG - chr2_3:8455144-8455163 Msa0276200:intron 40.0%
TCATATCAGTGCAACTTGTG+AGG + chr2_3:8455180-8455199 None:intergenic 40.0%
ACATTGTCTTCAGATGGATC+AGG - chr2_3:8455217-8455236 Msa0276200:intron 40.0%
!! CTTGTCAAGTTTTGTAGGGA+AGG + chr2_3:8455259-8455278 None:intergenic 40.0%
TTATACCTACCGCTACTCAA+AGG - chr2_3:8455498-8455517 Msa0276200:CDS 40.0%
CAAGAGAGAGAAAGCAATGA+AGG - chr2_3:8455574-8455593 Msa0276200:CDS 40.0%
GCCACTGAGAATGACTTATT+AGG - chr2_3:8455605-8455624 Msa0276200:intron 40.0%
TGAGTCTTGAAGATGTAGTG+GGG - chr2_3:8455690-8455709 Msa0276200:intron 40.0%
TGCAAGTTATTCTACTTGGC+AGG - chr2_3:8455716-8455735 Msa0276200:CDS 40.0%
GCAAGTTATTCTACTTGGCA+GGG - chr2_3:8455717-8455736 Msa0276200:CDS 40.0%
GAACCTCGTACAAAATCATG+GGG + chr2_3:8456220-8456239 None:intergenic 40.0%
AGATTGTATCCACCTGCATT+TGG - chr2_3:8456242-8456261 Msa0276200:CDS 40.0%
TATCGAGTAACACCAAATGC+AGG + chr2_3:8456257-8456276 None:intergenic 40.0%
!! AATCCTGAGAGATTTGCTGA+TGG - chr2_3:8456395-8456414 Msa0276200:intron 40.0%
ATTCCATCAGCAAATCTCTC+AGG + chr2_3:8456401-8456420 None:intergenic 40.0%
! TTTTGTCCCATACAGACTCT+AGG + chr2_3:8456473-8456492 None:intergenic 40.0%
! TTTGGAGTATGAGCATAGGT+TGG + chr2_3:8456563-8456582 None:intergenic 40.0%
! ATAACATGAGCACCCTTTTC+TGG + chr2_3:8456605-8456624 None:intergenic 40.0%
ACCTGTAGGTGCAAGAAAAA+TGG + chr2_3:8456780-8456799 None:intergenic 40.0%
TATAGCTTAGTGGTACCTGT+AGG + chr2_3:8456794-8456813 None:intergenic 40.0%
AACAAGTGTGAAGCACATCA+TGG - chr2_3:8456836-8456855 Msa0276200:five_prime_UTR 40.0%
ATGAAGTGCGTGACACTTAA+TGG - chr2_3:8456892-8456911 Msa0276200:five_prime_UTR 40.0%
! AACTGAGAGTGTATCAGCCA+TGG + chr2_3:8454150-8454169 None:intergenic 45.0%
GGTTCCATTTCTCTGCTTGT+AGG + chr2_3:8454287-8454306 None:intergenic 45.0%
!! ACACATGGAGAGTGCTGAAT+TGG - chr2_3:8454363-8454382 Msa0276200:intron 45.0%
!! GGAGAGTGCTGAATTGGATT+TGG - chr2_3:8454369-8454388 Msa0276200:intron 45.0%
! GGATTTGGTTGAAGCCAAAG+AGG - chr2_3:8454384-8454403 Msa0276200:intron 45.0%
AAGAGCTTCTCTAGCCTCTT+TGG + chr2_3:8454401-8454420 None:intergenic 45.0%
GAGAAGCTCTTACGAGAACA+AGG - chr2_3:8454410-8454429 Msa0276200:intron 45.0%
ATATCATCCGACAGGTCCAT+GGG + chr2_3:8454515-8454534 None:intergenic 45.0%
TATATCATCCGACAGGTCCA+TGG + chr2_3:8454516-8454535 None:intergenic 45.0%
! GAGGCATTATATCATCCGAC+AGG + chr2_3:8454523-8454542 None:intergenic 45.0%
TGAATGTATGGGATGACACG+AGG + chr2_3:8454542-8454561 None:intergenic 45.0%
CTTACATGGTCACAAGCCTT+AGG - chr2_3:8454612-8454631 Msa0276200:CDS 45.0%
! TTTGGTCTGGAACAACACCA+AGG - chr2_3:8454773-8454792 Msa0276200:CDS 45.0%
!! AAACTTGGTGCCATGATCTG+TGG + chr2_3:8455157-8455176 None:intergenic 45.0%
GTGCAACTTGTGAGGAAACT+TGG + chr2_3:8455172-8455191 None:intergenic 45.0%
GAGGCAACATTGTCTTCAGA+TGG - chr2_3:8455211-8455230 Msa0276200:intron 45.0%
ATGCATCCTCCTTTGAGTAG+CGG + chr2_3:8455510-8455529 None:intergenic 45.0%
AGAGAGAAAGCAATGAAGGC+AGG - chr2_3:8455578-8455597 Msa0276200:CDS 45.0%
GAGTCTTGAAGATGTAGTGG+GGG - chr2_3:8455691-8455710 Msa0276200:intron 45.0%
TGTTGAGTAGGTACCCTGAT+TGG - chr2_3:8455780-8455799 Msa0276200:CDS 45.0%
TTGCACGTTCTTGCCAATCA+GGG + chr2_3:8455796-8455815 None:intergenic 45.0%
TGATTGGCAAGAACGTGCAA+GGG - chr2_3:8455796-8455815 Msa0276200:CDS 45.0%
!! TTTAAGGTTGGCCTAGTGGT+TGG - chr2_3:8455953-8455972 Msa0276200:intron 45.0%
AAGATCTCAAGCCAACCACT+AGG + chr2_3:8455967-8455986 None:intergenic 45.0%
!! TAGTGGTTGGCTTGAGATCT+TGG - chr2_3:8455966-8455985 Msa0276200:intron 45.0%
CTTGGAGTTTGCACATCTCA+AGG - chr2_3:8455984-8456003 Msa0276200:intron 45.0%
TTTGCACATCTCAAGGTCTC+AGG - chr2_3:8455991-8456010 Msa0276200:intron 45.0%
!! GTCCATACTCTGGCTTTAGT+CGG - chr2_3:8456055-8456074 Msa0276200:intron 45.0%
AACCGACTAAAGCCAGAGTA+TGG + chr2_3:8456060-8456079 None:intergenic 45.0%
! GCTTTAGTCGGTTCTTGGAT+CGG - chr2_3:8456067-8456086 Msa0276200:intron 45.0%
!!! GCCATTTTTCTTGCACCTAC+AGG - chr2_3:8456776-8456795 Msa0276200:CDS 45.0%
GTCACGCACTTCATGACAAA+TGG + chr2_3:8456886-8456905 None:intergenic 45.0%
!! TAAAAATATATAAACTTTAT+TGG - chr2_3:8456156-8456175 Msa0276200:CDS 5.0%
!! TGAATAATTAAATTTAAATT+TGG + chr2_3:8456959-8456978 None:intergenic 5.0%
! TTGTTGTGAGCGCATTGGTG+TGG + chr2_3:8454085-8454104 None:intergenic 50.0%
ACTTGTGCTTGGGGACTTGA+AGG - chr2_3:8454454-8454473 Msa0276200:exon 50.0%
GGAAGCCAAATCCAAACCCA+TGG - chr2_3:8454496-8454515 Msa0276200:CDS 50.0%
CAGGTCCATGGGTTTGGATT+TGG + chr2_3:8454504-8454523 None:intergenic 50.0%
ATCCAAACCCATGGACCTGT+CGG - chr2_3:8454505-8454524 Msa0276200:CDS 50.0%
GGTTCTGTGAGAATCAGCCT+TGG + chr2_3:8454793-8454812 None:intergenic 50.0%
TACCTACCGCTACTCAAAGG+AGG - chr2_3:8455501-8455520 Msa0276200:CDS 50.0%
ATCCTCCTTTGAGTAGCGGT+AGG + chr2_3:8455506-8455525 None:intergenic 50.0%
CTTGCACGTTCTTGCCAATC+AGG + chr2_3:8455797-8455816 None:intergenic 50.0%
CTGATTGGCAAGAACGTGCA+AGG - chr2_3:8455795-8455814 Msa0276200:CDS 50.0%
!! CTCGTTTAAGGTTGGCCTAG+TGG - chr2_3:8455949-8455968 Msa0276200:intron 50.0%
AACTTAACACCAAGGGCCAG+GGG + chr2_3:8456025-8456044 None:intergenic 50.0%
GAACTTAACACCAAGGGCCA+GGG + chr2_3:8456026-8456045 None:intergenic 50.0%
TGAACTTAACACCAAGGGCC+AGG + chr2_3:8456027-8456046 None:intergenic 50.0%
!! GCCCTTGGTGTTAAGTTCAG+CGG - chr2_3:8456028-8456047 Msa0276200:intron 50.0%
CCCGCTGAACTTAACACCAA+GGG + chr2_3:8456032-8456051 None:intergenic 50.0%
!! CCCTTGGTGTTAAGTTCAGC+GGG - chr2_3:8456029-8456048 Msa0276200:intron 50.0%
!! CTCTGGCTTTAGTCGGTTCT+TGG - chr2_3:8456062-8456081 Msa0276200:intron 50.0%
! GCTCCCCATGATTTTGTACG+AGG - chr2_3:8456214-8456233 Msa0276200:CDS 50.0%
CGAGTAACACCAAATGCAGG+TGG + chr2_3:8456254-8456273 None:intergenic 50.0%
!! GGAAACATGGAAGTACCTGC+TGG - chr2_3:8456299-8456318 Msa0276200:CDS 50.0%
AAGAAAACCTCCACTCCAGC+AGG + chr2_3:8456317-8456336 None:intergenic 50.0%
! GAGCGCATTGGTGTGGACAT+GGG + chr2_3:8454078-8454097 None:intergenic 55.0%
! TGAGCGCATTGGTGTGGACA+TGG + chr2_3:8454079-8454098 None:intergenic 55.0%
ATCCGACAGGTCCATGGGTT+TGG + chr2_3:8454510-8454529 None:intergenic 55.0%
TTGGCAAGAACGTGCAAGGG+AGG - chr2_3:8455799-8455818 Msa0276200:CDS 55.0%
GTCTCAGGTTTGATTCCCCC+TGG - chr2_3:8456006-8456025 Msa0276200:intron 55.0%
ACTTAACACCAAGGGCCAGG+GGG + chr2_3:8456024-8456043 None:intergenic 55.0%
GCCCGCTGAACTTAACACCA+AGG + chr2_3:8456033-8456052 None:intergenic 55.0%
!! CATGGAAGTACCTGCTGGAG+TGG - chr2_3:8456304-8456323 Msa0276200:CDS 55.0%
!! ACTCTAGGACCCCCTCCAAA+TGG + chr2_3:8456458-8456477 None:intergenic 55.0%
AGGGGGTCCTAGAGTCTGTA+TGG - chr2_3:8456463-8456482 Msa0276200:intron 55.0%
GGGGGTCCTAGAGTCTGTAT+GGG - chr2_3:8456464-8456483 Msa0276200:intron 55.0%
GTTTGATTCCCCCTGGCCCT+TGG - chr2_3:8456013-8456032 Msa0276200:intron 60.0%
CAGCGGGCAAGTCCATACTC+TGG - chr2_3:8456045-8456064 Msa0276200:intron 60.0%
!! GGAAGTACCTGCTGGAGTGG+AGG - chr2_3:8456307-8456326 Msa0276200:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 8454069 8457038 8454069 ID=Msa0276200;Name=Msa0276200
chr2_3 mRNA 8454069 8457038 8454069 ID=Msa0276200-mRNA-1;Parent=Msa0276200;Name=Msa0276200-mRNA-1;_AED=0.07;_eAED=0.07;_QI=230|0.8|0.83|1|0.8|0.83|6|267|500
chr2_3 exon 8454069 8454309 8454069 ID=Msa0276200-mRNA-1:exon:3804;Parent=Msa0276200-mRNA-1
chr2_3 exon 8454435 8454892 8454435 ID=Msa0276200-mRNA-1:exon:3803;Parent=Msa0276200-mRNA-1
chr2_3 exon 8455284 8455611 8455284 ID=Msa0276200-mRNA-1:exon:3802;Parent=Msa0276200-mRNA-1
chr2_3 exon 8455703 8455947 8455703 ID=Msa0276200-mRNA-1:exon:3801;Parent=Msa0276200-mRNA-1
chr2_3 exon 8456135 8456349 8456135 ID=Msa0276200-mRNA-1:exon:3800;Parent=Msa0276200-mRNA-1
chr2_3 exon 8456526 8457038 8456526 ID=Msa0276200-mRNA-1:exon:3799;Parent=Msa0276200-mRNA-1
chr2_3 five_prime_UTR 8456809 8457038 8456809 ID=Msa0276200-mRNA-1:five_prime_utr;Parent=Msa0276200-mRNA-1
chr2_3 CDS 8456526 8456808 8456526 ID=Msa0276200-mRNA-1:cds;Parent=Msa0276200-mRNA-1
chr2_3 CDS 8456135 8456349 8456135 ID=Msa0276200-mRNA-1:cds;Parent=Msa0276200-mRNA-1
chr2_3 CDS 8455703 8455947 8455703 ID=Msa0276200-mRNA-1:cds;Parent=Msa0276200-mRNA-1
chr2_3 CDS 8455284 8455611 8455284 ID=Msa0276200-mRNA-1:cds;Parent=Msa0276200-mRNA-1
chr2_3 CDS 8454461 8454892 8454461 ID=Msa0276200-mRNA-1:cds;Parent=Msa0276200-mRNA-1
chr2_3 three_prime_UTR 8454435 8454460 8454435 ID=Msa0276200-mRNA-1:three_prime_utr;Parent=Msa0276200-mRNA-1
chr2_3 three_prime_UTR 8454069 8454309 8454069 ID=Msa0276200-mRNA-1:three_prime_utr;Parent=Msa0276200-mRNA-1
Gene Sequence

>Msa0276200

ATGGAACCATCATTGGCTATAAATTATGGCATAATATTCATCACTGTAACACTTGGTTTGGTATACACATGGAGAGTGCTGAATTGGATTTGGTTGAAGCCAAAGAGGCTAGAGAAGCTCTTACGAGAACAAGGATGTAAAGGAAATTCTTATAGACTTGTGCTTGGGGACTTGAAGGATTCATATAAGATGGGAAAGGAAGCCAAATCCAAACCCATGGACCTGTCGGATGATATAATGCCTCGTGTCATCCCATACATTCAACAACTTGTTCAAATTTACGGGAAGAATCCTTTCATTTGGTCTGGAACAACACCAAGGCTGATTCTCACAGAACCAGAGCTAATAAAAGATGTCTTAAACAGAACTTCTGAATTACAAAAGCCAAAATATGAGATTTTCAAATTTCTATTTAGTGGTCTTATAATTCACGAGGGAGAAAAGTGGAGAAAGCATAGAAGGCTAATGAACGCTGCTTTCCAGTTAGAAAAATTGAAGATCATGGCACCAAGTTTCCTCACAAGTTGCACTGATATGATTAGCAAATGGGAGGCAACATTGTCTTCAGATGGATCAGGTGAAATAGACATATGGCCTTCCCTACAAAACTTGACAAGTGATGTTATTTCTCGAAACGCATTTGGAAGTAGTTACGAAGAAGGAAAAAGAATATTTGATCTTCAAAGAGAGCAAGGTGAACTTGTAATGAAAAATCTTGTGAAATCTTTAATCCCTTTATGGAGGTTTATACCTACCGCTACTCAAAGGAGGATGCATGAAATTGAAAAAGATATAGATTCTTCTCTTAGATATATAATTAACAAGAGAGAGAAAGCAATGAAGGCAGGTGAAGCCACTGAGAATGACTTATTAGGTCTTCTTCTAGAGTCAAACCACCAAGAAATTAGAGATCATGGAAACAACAAGAATATGGGAATGAGTCTTGAAGATGTAGTGGGGGAATGCAAGTTATTCTACTTGGCAGGGCAAGAATCTACTTCAACTATGCTTGTTTGGACAATGATATTGTTGAGTAGGTACCCTGATTGGCAAGAACGTGCAAGGGAGGAACTCCCCATGATTTTGTACGAGGTTCTAAGATTGTATCCACCTGCATTTGGTGTTACTCGATATGTTGGCAAAGATATAAAGTTTGGAAACATGGAAGTACCTGCTGGAGTGGAGGTTTTCTTACCAATTATTTTGCTTCAACATAACAATGAACTATGGGGTGATGATGCAAAGATGTTCAATCCTGAGAGATTTGCTGATGGAATTTCCAAAGCAACAAATGGTAGATTTATATATTTTCCATTTGGAGGGGGTCCTAGAGTCTGTATGGGACAAAACTTTTCACTATTGGAAGCAAAGATGGCAGTGTCAATGATTTTACAAAATTTTTACTTTGAACTTTCTCCAACCTATGCTCATACTCCAAATTTAGTAATGACTATTCAGCCAGAAAAGGGTGCTCATGTTATTCTACGCAAAGTGAAAACATAA
Protein sequence

>Msa0276200

MEPSLAINYGIIFITVTLGLVYTWRVLNWIWLKPKRLEKLLREQGCKGNSYRLVLGDLKDSYKMGKEAKSKPMDLSDDIMPRVIPYIQQLVQIYGKNPFIWSGTTPRLILTEPELIKDVLNRTSELQKPKYEIFKFLFSGLIIHEGEKWRKHRRLMNAAFQLEKLKIMAPSFLTSCTDMISKWEATLSSDGSGEIDIWPSLQNLTSDVISRNAFGSSYEEGKRIFDLQREQGELVMKNLVKSLIPLWRFIPTATQRRMHEIEKDIDSSLRYIINKREKAMKAGEATENDLLGLLLESNHQEIRDHGNNKNMGMSLEDVVGECKLFYLAGQESTSTMLVWTMILLSRYPDWQERAREELPMILYEVLRLYPPAFGVTRYVGKDIKFGNMEVPAGVEVFLPIILLQHNNELWGDDAKMFNPERFADGISKATNGRFIYFPFGGGPRVCMGQNFSLLEAKMAVSMILQNFYFELSPTYAHTPNLVMTIQPEKGAHVILRKVKT*