AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0238600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238600 MtrunA17_Chr2g0288661 94.038 520 11 1 1 500 1 520 0.0 999
Msa0238600 MtrunA17_Chr2g0307291 65.385 520 160 1 1 500 1 520 0.0 722
Msa0238600 MtrunA17_Chr2g0307301 65.000 520 162 1 1 500 1 520 0.0 721
Msa0238600 MtrunA17_Chr2g0313751 66.341 511 152 1 10 500 35 545 0.0 715
Msa0238600 MtrunA17_Chr5g0446131 63.601 511 166 1 10 500 6 516 0.0 684
Msa0238600 MtrunA17_Chr2g0313781 62.452 522 163 3 11 499 8 529 0.0 682
Msa0238600 MtrunA17_Chr2g0313821 61.644 511 175 2 11 500 8 518 0.0 674
Msa0238600 MtrunA17_Chr2g0313801 61.765 510 174 2 11 499 8 517 0.0 671
Msa0238600 MtrunA17_Chr2g0313791 61.373 510 171 3 11 499 8 512 0.0 667
Msa0238600 MtrunA17_Chr2g0313761 66.333 499 148 1 22 500 15 513 0.0 654
Msa0238600 MtrunA17_Chr2g0313831 59.423 520 187 3 1 499 1 517 0.0 650
Msa0238600 MtrunA17_Chr2g0313811 61.122 517 168 3 16 499 13 529 0.0 637
Msa0238600 MtrunA17_Chr2g0313771 54.883 512 203 6 13 498 14 523 0.0 573
Msa0238600 MtrunA17_Chr8g0354511 54.191 513 209 6 11 498 13 524 0.0 553
Msa0238600 MtrunA17_Chr8g0354531 52.437 513 217 6 11 498 135 645 0.0 548
Msa0238600 MtrunA17_Chr8g0354571 51.657 513 222 6 11 498 13 524 0.0 538
Msa0238600 MtrunA17_Chr4g0014051 50.195 512 230 5 10 498 19 528 2.08e-179 514
Msa0238600 MtrunA17_Chr4g0063221 34.100 522 300 7 7 498 12 519 2.79e-107 329
Msa0238600 MtrunA17_Chr7g0262111 37.400 500 276 9 25 500 21 507 1.95e-106 327
Msa0238600 MtrunA17_Chr1g0154731 34.661 502 291 6 21 498 15 503 2.72e-104 321
Msa0238600 MtrunA17_Chr1g0193811 33.269 517 313 8 10 499 6 517 9.84e-102 315
Msa0238600 MtrunA17_Chr8g0354561 48.171 328 144 6 11 333 95 401 1.26e-95 295
Msa0238600 MtrunA17_Chr6g0457421 32.554 513 306 8 11 496 6 505 2.45e-94 295
Msa0238600 MtrunA17_Chr7g0215181 32.370 519 307 9 11 500 8 511 4.76e-93 292
Msa0238600 MtrunA17_Chr4g0004601 30.970 536 324 9 2 498 3 531 2.19e-82 265
Msa0238600 MtrunA17_Chr1g0203141 29.150 494 312 7 31 496 30 513 4.65e-81 261
Msa0238600 MtrunA17_Chr7g0235261 31.663 499 296 7 31 491 12 503 3.67e-80 258
Msa0238600 MtrunA17_Chr3g0128461 30.337 534 324 14 1 497 1 523 8.62e-77 250
Msa0238600 MtrunA17_Chr1g0203151 29.124 491 312 6 31 496 30 509 1.15e-75 247
Msa0238600 MtrunA17_Chr8g0364081 30.214 513 319 9 26 500 32 543 3.18e-75 246
Msa0238600 MtrunA17_Chr8g0336361 29.663 563 322 10 4 498 2 558 2.27e-74 244
Msa0238600 MtrunA17_Chr6g0479681 28.543 508 310 8 31 496 31 527 4.35e-72 238
Msa0238600 MtrunA17_Chr6g0472221 28.324 519 328 9 12 496 16 524 1.29e-71 236
Msa0238600 MtrunA17_Chr8g0362731 32.195 410 244 7 115 499 7 407 1.00e-68 226
Msa0238600 MtrunA17_Chr8g0354541 54.494 178 61 1 341 498 1 178 7.52e-65 207
Msa0238600 MtrunA17_Chr2g0308651 32.995 394 231 6 137 498 23 415 5.98e-62 208
Msa0238600 MtrunA17_Chr2g0307321 70.968 93 27 0 168 260 1 93 3.08e-43 149
Msa0238600 MtrunA17_Chr2g0307311 54.310 116 53 0 44 159 9 124 4.57e-37 133
Msa0238600 MtrunA17_Chr6g0472171 34.286 140 92 0 357 496 17 156 5.77e-33 122
Msa0238600 MtrunA17_Chr3g0108651 46.721 122 61 2 383 500 1 122 1.61e-32 120
Msa0238600 MtrunA17_Chr1g0182861 35.507 138 89 0 361 498 26 163 8.96e-32 119
Msa0238600 MtrunA17_Chr0c19g0493771 27.208 419 243 17 108 484 232 630 3.54e-28 118
Msa0238600 MtrunA17_Chr6g0472161 25.648 347 235 7 20 358 21 352 8.32e-28 114
Msa0238600 MtrunA17_Chr5g0396521 27.209 430 229 18 140 497 152 569 1.12e-26 113
Msa0238600 MtrunA17_Chr1g0179811 25.901 444 228 16 94 473 108 514 1.45e-26 113
Msa0238600 MtrunA17_Chr5g0403351 25.285 439 271 16 87 484 61 483 3.38e-26 111
Msa0238600 MtrunA17_Chr3g0101731 22.222 486 310 18 63 497 23 491 2.01e-24 106
Msa0238600 MtrunA17_Chr5g0403331 21.801 422 282 11 87 471 62 472 6.73e-23 101
Msa0238600 MtrunA17_Chr3g0101701 23.099 355 235 8 146 471 128 473 1.09e-22 101
Msa0238600 MtrunA17_Chr5g0446161 22.145 429 289 12 87 484 66 480 2.10e-22 100
Msa0238600 MtrunA17_Chr5g0403321 23.005 426 273 13 88 471 62 474 2.43e-22 100
Msa0238600 MtrunA17_Chr1g0162811 23.394 436 283 13 87 486 62 482 5.37e-22 99.0
Msa0238600 MtrunA17_Chr7g0260831 24.301 465 291 16 78 497 53 501 7.98e-22 98.6
Msa0238600 MtrunA17_Chr3g0101691 23.464 358 230 9 146 471 128 473 1.27e-21 97.8
Msa0238600 MtrunA17_Chr3g0101711 22.011 368 248 9 146 484 127 484 1.89e-21 97.4
Msa0238600 MtrunA17_Chr3g0101631 22.409 357 228 10 146 471 126 464 4.73e-21 96.3
Msa0238600 MtrunA17_Chr3g0116741 22.870 446 297 14 87 498 75 507 4.79e-21 96.3
Msa0238600 MtrunA17_Chr3g0101661 22.222 369 245 10 146 484 128 484 1.22e-20 95.1
Msa0238600 MtrunA17_Chr3g0101721 22.426 437 289 15 87 486 62 485 1.44e-20 94.7
Msa0238600 MtrunA17_Chr5g0431671 21.963 428 290 13 75 471 55 469 2.08e-20 94.4
Msa0238600 MtrunA17_Chr5g0446151 22.145 429 290 12 87 484 66 481 2.18e-20 94.0
Msa0238600 MtrunA17_Chr5g0445381 21.963 428 286 14 79 471 85 499 2.64e-20 94.0
Msa0238600 MtrunA17_Chr5g0445461 21.127 426 284 15 88 477 65 474 3.53e-20 93.6
Msa0238600 MtrunA17_Chr5g0431641 24.000 425 261 17 88 471 65 468 4.76e-20 93.2
Msa0238600 MtrunA17_Chr4g0052851 22.871 411 267 13 87 467 58 448 1.06e-19 92.0
Msa0238600 MtrunA17_Chr5g0445421 21.462 424 272 13 79 471 128 521 1.07e-19 92.0
Msa0238600 MtrunA17_Chr1g0163281 22.087 412 260 11 132 497 122 518 1.19e-19 92.0
Msa0238600 MtrunA17_Chr3g0116681 22.897 428 285 12 80 474 59 474 1.24e-19 91.7
Msa0238600 MtrunA17_Chr8g0377341 23.497 549 316 18 5 500 32 529 1.58e-19 91.7
Msa0238600 MtrunA17_Chr3g0101671 21.934 424 279 15 87 471 63 473 2.50e-19 90.9
Msa0238600 MtrunA17_Chr5g0445441 21.659 434 292 14 79 477 95 515 2.71e-19 90.9
Msa0238600 MtrunA17_Chr7g0246221 23.148 432 269 12 87 472 58 472 2.99e-19 90.5
Msa0238600 MtrunA17_Chr8g0351391 23.822 382 221 12 140 472 124 484 3.70e-19 90.5
Msa0238600 MtrunA17_Chr4g0076161 22.196 419 281 10 87 471 64 471 4.85e-19 90.1
Msa0238600 MtrunA17_Chr5g0445451 21.946 442 294 18 79 484 54 480 9.39e-19 89.0
Msa0238600 MtrunA17_Chr6g0463801 22.558 430 287 12 87 484 62 477 1.04e-18 89.0
Msa0238600 MtrunA17_Chr5g0445531 21.053 418 285 12 86 471 63 467 1.11e-18 89.0
Msa0238600 MtrunA17_Chr5g0405001 23.596 356 239 8 144 471 131 481 1.65e-18 88.6
Msa0238600 MtrunA17_Chr6g0463791 23.310 429 281 12 90 484 65 479 5.08e-18 86.7
Msa0238600 MtrunA17_Chr4g0024771 21.831 426 290 14 90 484 67 480 5.45e-18 86.7
Msa0238600 MtrunA17_Chr3g0101751 21.429 434 293 13 87 484 67 488 7.17e-18 86.3
Msa0238600 MtrunA17_Chr1g0182871 25.571 219 156 3 140 358 27 238 1.69e-17 82.4
Msa0238600 MtrunA17_Chr3g0101581 22.222 423 274 15 87 470 61 467 1.83e-17 85.1
Msa0238600 MtrunA17_Chr4g0058201 21.801 422 276 12 89 471 54 460 1.96e-17 85.1
Msa0238600 MtrunA17_Chr1g0184421 23.195 457 281 15 82 493 58 489 2.14e-17 84.7
Msa0238600 MtrunA17_Chr8g0390881 23.007 439 283 16 87 484 60 484 2.28e-17 84.7
Msa0238600 MtrunA17_Chr4g0058231 22.454 432 274 13 87 471 52 469 2.66e-17 84.7
Msa0238600 MtrunA17_Chr3g0119681 23.148 432 260 11 107 482 84 499 3.27e-17 84.3
Msa0238600 MtrunA17_Chr3g0101571 21.635 416 279 13 87 467 60 463 4.33e-17 84.0
Msa0238600 MtrunA17_Chr3g0101621 22.689 357 225 13 146 471 123 459 8.53e-17 82.8
Msa0238600 MtrunA17_Chr8g0334891 24.355 349 208 11 154 471 133 456 1.11e-16 82.4
Msa0238600 MtrunA17_Chr3g0101761 20.968 434 295 13 87 484 60 481 1.47e-16 82.4
Msa0238600 MtrunA17_Chr7g0246121 22.302 417 278 9 87 467 58 464 1.78e-16 82.0
Msa0238600 MtrunA17_Chr1g0163491 21.359 412 267 10 132 497 120 520 2.16e-16 82.0
Msa0238600 MtrunA17_Chr7g0218611 23.826 298 192 6 201 470 177 467 2.17e-16 81.6
Msa0238600 MtrunA17_Chr3g0101601 22.778 360 224 13 146 471 126 465 3.26e-16 81.3
Msa0238600 MtrunA17_Chr5g0443401 21.519 395 253 9 105 471 86 451 4.47e-16 80.5
Msa0238600 MtrunA17_Chr8g0361471 21.176 425 281 12 87 471 59 469 4.52e-16 80.9
Msa0238600 MtrunA17_Chr8g0357431 21.262 428 300 11 87 484 62 482 4.86e-16 80.9
Msa0238600 MtrunA17_Chr6g0449341 20.805 447 298 15 101 497 122 562 5.07e-16 80.9
Msa0238600 MtrunA17_Chr4g0039391 22.824 425 273 12 87 470 59 469 5.10e-16 80.5
Msa0238600 MtrunA17_Chr6g0466331 20.561 428 280 13 87 471 59 469 6.27e-16 80.5
Msa0238600 MtrunA17_Chr6g0465511 20.561 428 280 13 87 471 59 469 6.44e-16 80.5
Msa0238600 MtrunA17_Chr3g0101651 21.024 371 248 10 146 484 128 485 8.02e-16 80.1
Msa0238600 MtrunA17_Chr4g0035921 21.212 429 286 11 87 471 61 481 8.30e-16 80.1
Msa0238600 MtrunA17_Chr4g0047661 22.170 424 281 13 87 471 72 485 8.74e-16 80.1
Msa0238600 MtrunA17_Chr5g0446101 23.026 304 200 6 204 484 1 293 9.59e-16 78.2
Msa0238600 MtrunA17_Chr2g0280261 22.069 435 283 13 87 484 59 474 1.37e-15 79.3
Msa0238600 MtrunA17_Chr5g0430081 21.749 423 282 13 87 471 59 470 1.42e-15 79.3
Msa0238600 MtrunA17_Chr4g0058281 21.296 432 289 15 83 474 64 484 2.62e-15 78.6
Msa0238600 MtrunA17_Chr3g0101821 19.477 421 292 11 87 471 60 469 2.77e-15 78.2
Msa0238600 MtrunA17_Chr8g0339311 23.624 436 268 15 85 467 65 488 2.78e-15 78.6
Msa0238600 MtrunA17_Chr5g0430031 19.952 416 298 11 87 471 61 472 3.04e-15 78.2
Msa0238600 MtrunA17_Chr3g0101801 20.230 435 297 15 87 484 67 488 3.24e-15 78.2
Msa0238600 MtrunA17_Chr7g0227281 22.850 407 256 14 132 497 104 493 3.26e-15 78.2
Msa0238600 MtrunA17_Chr1g0162801 21.918 438 290 14 87 486 62 485 3.90e-15 77.8
Msa0238600 MtrunA17_Chr4g0017411 22.302 417 262 13 87 467 55 445 5.28e-15 77.4
Msa0238600 MtrunA17_Chr7g0265611 25.070 359 230 12 146 472 135 486 5.55e-15 77.4
Msa0238600 MtrunA17_Chr8g0339331 23.598 428 262 15 94 471 72 484 6.60e-15 77.0
Msa0238600 MtrunA17_Chr8g0334941 25.225 333 177 12 178 471 2 301 7.02e-15 75.9
Msa0238600 MtrunA17_Chr1g0163391 21.898 411 264 14 131 497 104 501 7.28e-15 77.0
Msa0238600 MtrunA17_Chr6g0449331 21.117 412 274 13 132 497 108 514 1.15e-14 76.3
Msa0238600 MtrunA17_Chr1g0163351 22.170 424 249 15 132 497 104 504 1.34e-14 76.3
Msa0238600 MtrunA17_Chr8g0372251 23.054 334 223 10 144 448 122 450 1.42e-14 76.3
Msa0238600 MtrunA17_Chr3g0101811 19.556 450 295 17 87 484 62 496 1.47e-14 76.3
Msa0238600 MtrunA17_Chr4g0020041 24.062 320 200 10 208 497 186 492 1.95e-14 75.9
Msa0238600 MtrunA17_Chr8g0357421 20.370 432 298 11 87 484 62 481 2.34e-14 75.5
Msa0238600 MtrunA17_Chr8g0381541 25.806 248 142 8 251 470 229 462 2.96e-14 75.1
Msa0238600 MtrunA17_Chr6g0449361 22.462 463 281 22 80 483 49 492 3.15e-14 75.1
Msa0238600 MtrunA17_Chr1g0183611 22.362 398 245 15 132 479 23 406 3.47e-14 74.3
Msa0238600 MtrunA17_Chr4g0011981 23.404 423 274 13 87 471 54 464 3.99e-14 74.7
Msa0238600 MtrunA17_Chr6g0484841 20.979 429 294 10 87 480 61 479 4.12e-14 74.7
Msa0238600 MtrunA17_Chr5g0430071 24.691 324 205 9 204 494 36 353 4.18e-14 73.9
Msa0238600 MtrunA17_Chr4g0004481 21.516 409 261 13 132 498 102 492 4.21e-14 74.7
Msa0238600 MtrunA17_Chr4g0046351 22.222 423 269 12 94 471 67 474 4.84e-14 74.3
Msa0238600 MtrunA17_Chr7g0248991 25.797 345 199 15 132 436 40 367 5.21e-14 73.6
Msa0238600 MtrunA17_Chr8g0381571 25.714 245 140 8 251 467 229 459 6.79e-14 73.9
Msa0238600 MtrunA17_Chr8g0387101 24.523 367 221 13 146 471 125 476 6.89e-14 73.9
Msa0238600 MtrunA17_Chr1g0167321 21.379 435 296 13 87 486 59 482 7.81e-14 73.9
Msa0238600 MtrunA17_Chr2g0321171 25.410 244 140 7 248 467 241 466 8.34e-14 73.6
Msa0238600 MtrunA17_Chr6g0451741 23.982 442 266 16 90 474 89 517 8.59e-14 73.9
Msa0238600 MtrunA17_Chr5g0403931 24.919 309 164 10 211 472 168 455 8.99e-14 73.6
Msa0238600 MtrunA17_Chr1g0174451 23.349 424 256 16 94 467 68 472 9.70e-14 73.6
Msa0238600 MtrunA17_Chr1g0184461 21.007 457 291 14 82 493 58 489 1.00e-13 73.6
Msa0238600 MtrunA17_Chr3g0113321 25.000 296 174 8 229 497 193 467 1.06e-13 73.2
Msa0238600 MtrunA17_Chr2g0280121 23.596 356 232 9 146 467 127 476 1.09e-13 73.2
Msa0238600 MtrunA17_Chr4g0046331 22.353 425 268 12 94 471 67 476 1.13e-13 73.2
Msa0238600 MtrunA17_Chr1g0151221 22.669 472 269 16 90 490 66 512 1.17e-13 73.2
Msa0238600 MtrunA17_Chr5g0431591 21.311 305 209 8 204 484 1 298 1.26e-13 72.0
Msa0238600 MtrunA17_Chr3g0101741 20.000 365 250 9 146 484 55 403 1.55e-13 72.4
Msa0238600 MtrunA17_Chr4g0052861 21.853 421 270 14 87 467 56 457 1.60e-13 72.8
Msa0238600 MtrunA17_Chr7g0235551 24.839 310 188 11 205 477 181 482 1.70e-13 72.8
Msa0238600 MtrunA17_Chr1g0163371 23.902 205 119 5 325 497 22 221 1.78e-13 69.7
Msa0238600 MtrunA17_Chr6g0466941 22.300 426 270 15 94 467 67 483 1.86e-13 72.8
Msa0238600 MtrunA17_Chr5g0430131 22.680 291 200 5 204 471 183 471 2.08e-13 72.4
Msa0238600 MtrunA17_Chr3g0101831 19.437 355 246 9 146 471 127 470 2.89e-13 72.0
Msa0238600 MtrunA17_Chr8g0380501 21.707 410 258 13 132 497 100 490 3.10e-13 72.0
Msa0238600 MtrunA17_Chr1g0156101 21.803 477 296 19 81 492 36 500 3.12e-13 72.0
Msa0238600 MtrunA17_Chr4g0047641 21.789 436 275 15 83 471 68 484 3.21e-13 72.0
Msa0238600 MtrunA17_Chr7g0225531 27.407 270 145 11 232 467 228 480 3.23e-13 72.0
Msa0238600 MtrunA17_Chr4g0011901 21.957 419 283 11 88 471 55 464 3.24e-13 71.6
Msa0238600 MtrunA17_Chr5g0395321 22.488 418 273 16 87 471 66 465 3.49e-13 72.0
Msa0238600 MtrunA17_Chr8g0380471 22.194 392 244 12 135 496 114 474 4.31e-13 71.2
Msa0238600 MtrunA17_Chr1g0163451 26.108 203 113 5 327 497 326 523 5.01e-13 71.2
Msa0238600 MtrunA17_Chr8g0344151 21.596 426 280 13 87 471 60 472 6.28e-13 70.9
Msa0238600 MtrunA17_Chr6g0472311 22.120 434 275 15 87 471 65 484 8.29e-13 70.5
Msa0238600 MtrunA17_Chr8g0390871 26.705 176 105 3 327 480 28 201 8.82e-13 68.2
Msa0238600 MtrunA17_Chr5g0401691 22.067 358 220 10 146 467 140 474 1.03e-12 70.5
Msa0238600 MtrunA17_Chr1g0163211 21.836 403 259 13 132 493 109 496 1.23e-12 70.1
Msa0238600 MtrunA17_Chr7g0227291 21.867 407 260 14 132 497 104 493 1.31e-12 70.1
Msa0238600 MtrunA17_Chr6g0466901 22.460 374 234 14 146 474 125 487 1.48e-12 69.7
Msa0238600 MtrunA17_Chr1g0163421 24.409 254 147 8 277 497 298 539 1.58e-12 69.7
Msa0238600 MtrunA17_Chr3g0135841 21.692 461 262 15 90 472 69 508 1.63e-12 69.7
Msa0238600 MtrunA17_Chr1g0163461 26.108 203 113 5 327 497 321 518 1.78e-12 69.7
Msa0238600 MtrunA17_Chr2g0280081 23.099 342 216 10 166 467 136 470 1.92e-12 70.1
Msa0238600 MtrunA17_Chr2g0280081 28.261 184 102 5 313 467 789 971 4.22e-11 65.9
Msa0238600 MtrunA17_Chr8g0387001 23.106 264 158 5 263 493 249 500 2.03e-12 69.3
Msa0238600 MtrunA17_Chr6g0451641 21.944 360 236 10 146 467 130 482 2.13e-12 69.3
Msa0238600 MtrunA17_Chr1g0200951 21.707 410 257 14 103 467 105 495 2.46e-12 69.3
Msa0238600 MtrunA17_Chr6g0451781 26.460 291 162 9 221 467 240 522 2.67e-12 68.9
Msa0238600 MtrunA17_Chr4g0046681 29.586 169 94 4 323 467 29 196 2.71e-12 66.6
Msa0238600 MtrunA17_Chr6g0463621 26.425 193 113 5 326 493 2 190 2.76e-12 65.9
Msa0238600 MtrunA17_Chr8g0362481 24.367 316 194 11 190 467 94 402 2.99e-12 68.6
Msa0238600 MtrunA17_Chr3g0086691 21.311 366 236 13 146 471 121 474 3.99e-12 68.6
Msa0238600 MtrunA17_Chr6g0449381 20.050 399 262 13 131 483 107 494 4.38e-12 68.2
Msa0238600 MtrunA17_Chr3g0107501 21.168 274 174 7 224 467 186 447 4.78e-12 68.2
Msa0238600 MtrunA17_Chr5g0431501 22.689 357 234 13 147 471 124 470 4.96e-12 68.2
Msa0238600 MtrunA17_Chr5g0431461 22.689 357 234 13 147 471 124 470 4.96e-12 68.2
Msa0238600 MtrunA17_Chr7g0246151 21.528 432 275 14 87 472 58 471 5.78e-12 67.8
Msa0238600 MtrunA17_Chr8g0364651 26.087 184 108 4 316 472 287 469 6.83e-12 67.8
Msa0238600 MtrunA17_Chr5g0445371 25.346 217 140 7 258 471 1 198 6.97e-12 65.5
Msa0238600 MtrunA17_Chr2g0310381 21.528 432 270 16 87 471 52 461 7.78e-12 67.4
Msa0238600 MtrunA17_Chr6g0484811 21.040 423 286 12 87 471 61 473 7.87e-12 67.4
Msa0238600 MtrunA17_Chr3g0101611 20.941 425 277 12 87 470 62 468 1.00e-11 67.0
Msa0238600 MtrunA17_Chr8g0362701 22.434 419 267 15 94 467 66 471 1.20e-11 67.0
Msa0238600 MtrunA17_Chr1g0205361 24.031 258 158 10 240 471 220 465 1.23e-11 67.0
Msa0238600 MtrunA17_Chr4g0039901 20.792 404 260 11 87 448 59 444 1.30e-11 66.6
Msa0238600 MtrunA17_Chr5g0430101 21.412 425 279 16 87 471 60 469 1.36e-11 66.6
Msa0238600 MtrunA17_Chr4g0011871 21.065 432 282 13 84 471 49 465 1.44e-11 66.6
Msa0238600 MtrunA17_Chr7g0255131 23.077 416 258 13 99 467 76 476 1.56e-11 66.6
Msa0238600 MtrunA17_Chr1g0160861 23.432 303 190 11 197 471 18 306 2.24e-11 65.1
Msa0238600 MtrunA17_Chr8g0344181 21.362 426 281 14 87 471 62 474 2.65e-11 65.9
Msa0238600 MtrunA17_Chr5g0430091 22.337 291 202 4 204 471 183 472 2.66e-11 65.9
Msa0238600 MtrunA17_Chr6g0451751 24.159 327 193 12 195 482 189 499 2.81e-11 65.9
Msa0238600 MtrunA17_Chr7g0258211 21.451 317 205 9 187 467 168 476 2.84e-11 65.9
Msa0238600 MtrunA17_Chr2g0293411 22.038 422 262 16 86 470 69 460 3.27e-11 65.5
Msa0238600 MtrunA17_Chr5g0419691 22.742 299 196 7 201 471 173 464 3.43e-11 65.5
Msa0238600 MtrunA17_Chr4g0044851 21.628 430 264 11 85 471 45 444 3.74e-11 65.1
Msa0238600 MtrunA17_Chr8g0369791 20.913 416 247 11 85 455 45 423 4.14e-11 65.1
Msa0238600 MtrunA17_Chr1g0171041 22.789 294 162 8 228 488 236 497 5.39e-11 64.7
Msa0238600 MtrunA17_Chr6g0451691 23.839 323 191 11 194 474 190 499 5.80e-11 64.7
Msa0238600 MtrunA17_Chr1g0200961 21.547 362 239 9 144 471 115 465 6.27e-11 64.7
Msa0238600 MtrunA17_Chr1g0160851 22.000 300 198 8 197 471 177 465 6.61e-11 64.7
Msa0238600 MtrunA17_Chr5g0395331 23.779 307 195 10 193 471 177 472 7.72e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238600 AT3G14690.1 48.069 518 239 6 5 498 1 512 0.0 520
Msa0238600 AT3G14690.2 48.069 518 239 6 5 498 36 547 0.0 520
Msa0238600 AT3G14610.1 49.200 500 225 5 22 498 19 512 6.39e-180 515
Msa0238600 AT3G14620.1 50.100 499 216 6 22 496 24 513 3.41e-174 500
Msa0238600 AT3G14630.1 47.750 511 235 5 14 498 4 508 6.50e-174 499
Msa0238600 AT3G14640.1 49.000 500 221 6 25 498 23 514 2.08e-173 498
Msa0238600 AT3G14630.2 47.750 511 235 5 14 498 59 563 2.24e-173 500
Msa0238600 AT3G14660.1 47.782 496 231 4 25 498 23 512 3.69e-173 498
Msa0238600 AT3G14680.1 48.387 496 228 4 25 498 23 512 6.87e-173 497
Msa0238600 AT3G14640.2 49.000 500 221 6 25 498 45 536 8.85e-173 498
Msa0238600 AT3G14650.1 47.379 496 233 4 25 498 23 512 6.37e-171 492
Msa0238600 AT2G26710.1 35.783 517 289 5 11 498 13 515 2.60e-124 373
Msa0238600 AT3G14660.2 49.432 352 151 3 168 498 21 366 2.68e-122 362
Msa0238600 AT3G14660.3 47.059 340 172 3 25 362 23 356 7.68e-112 337
Msa0238600 AT2G46960.2 35.743 498 279 10 30 496 28 515 3.03e-101 314
Msa0238600 AT2G46950.1 35.130 501 286 9 25 498 82 570 6.05e-100 312
Msa0238600 AT1G75130.1 33.199 497 292 7 30 500 23 505 4.21e-96 300
Msa0238600 AT4G27710.1 33.398 518 304 7 11 496 7 515 1.09e-95 299
Msa0238600 AT5G38450.1 34.170 518 295 12 11 496 11 514 1.43e-87 278
Msa0238600 AT1G67110.1 32.443 524 310 11 1 496 1 508 6.22e-82 263
Msa0238600 AT2G46960.1 36.364 396 216 7 128 496 13 399 3.35e-81 258
Msa0238600 AT5G24910.1 30.912 537 322 12 1 499 6 531 1.36e-74 245
Msa0238600 AT5G52400.1 28.654 520 318 12 12 496 16 517 1.02e-73 242
Msa0238600 AT5G24900.1 31.000 500 297 10 36 498 37 525 1.74e-72 239
Msa0238600 AT1G17060.1 38.182 275 169 1 16 289 16 290 1.78e-72 233
Msa0238600 AT5G24900.2 33.504 391 224 7 136 498 26 408 1.59e-65 218
Msa0238600 AT2G46950.2 34.412 340 205 8 25 358 82 409 5.03e-57 196
Msa0238600 AT4G27710.2 32.312 359 223 6 11 358 7 356 5.98e-54 186
Msa0238600 AT5G38450.2 32.312 359 221 9 11 358 11 358 4.86e-45 162
Msa0238600 AT1G67110.2 30.081 369 238 8 1 362 1 356 3.24e-39 146
Msa0238600 AT5G24910.2 27.128 376 247 10 1 358 6 372 5.86e-31 124
Msa0238600 AT3G53130.1 25.390 449 264 16 94 493 108 534 9.25e-27 114
Msa0238600 AT1G31800.1 26.225 408 242 15 108 473 153 543 1.02e-26 114
Msa0238600 AT4G13310.1 24.832 447 253 14 94 492 63 474 2.37e-26 112
Msa0238600 AT4G13290.1 24.541 436 260 12 94 492 64 467 2.39e-25 109
Msa0238600 AT3G48300.1 24.029 412 262 13 90 467 56 450 4.04e-25 108
Msa0238600 AT3G48300.2 24.029 412 262 13 90 467 58 452 4.10e-25 108
Msa0238600 AT3G48310.1 21.256 414 279 9 94 475 63 461 4.22e-23 102
Msa0238600 AT4G15110.1 25.123 406 222 13 140 474 159 553 7.55e-22 99.4
Msa0238600 AT3G48270.1 22.871 411 270 10 94 472 62 457 2.15e-21 97.4
Msa0238600 AT5G24950.1 23.095 420 269 12 87 467 56 460 2.75e-21 97.1
Msa0238600 AT1G24540.1 22.573 443 291 13 100 496 82 518 3.07e-21 97.4
Msa0238600 AT2G21910.1 23.640 478 287 19 79 497 47 505 2.76e-20 94.4
Msa0238600 AT1G11680.1 26.611 357 190 12 154 471 135 458 4.87e-20 93.2
Msa0238600 AT3G48280.1 22.410 415 276 10 89 471 56 456 2.33e-19 91.3
Msa0238600 AT2G30770.1 24.757 412 257 11 94 467 64 460 3.32e-19 90.9
Msa0238600 AT3G48290.1 22.651 415 274 10 89 471 59 458 5.16e-19 90.1
Msa0238600 AT1G13080.1 23.481 362 229 13 146 472 120 468 3.39e-18 87.8
Msa0238600 AT1G57750.1 24.731 465 285 18 80 497 49 495 5.21e-18 87.0
Msa0238600 AT3G26125.1 21.598 463 296 15 90 493 73 527 6.39e-18 87.0
Msa0238600 AT1G13080.2 23.151 311 196 9 195 472 50 350 9.37e-18 85.5
Msa0238600 AT4G31500.1 24.225 355 219 13 149 467 122 462 1.58e-17 85.9
Msa0238600 AT5G04330.1 22.642 424 282 11 87 471 56 472 2.24e-17 85.1
Msa0238600 AT3G48320.1 20.732 410 278 9 94 471 63 457 2.39e-17 85.1
Msa0238600 AT3G48520.1 22.164 379 234 12 145 482 123 481 3.52e-17 84.7
Msa0238600 AT3G25180.1 23.192 401 254 11 108 467 86 473 4.37e-17 84.3
Msa0238600 AT3G48290.2 22.633 433 278 11 89 471 59 484 4.52e-17 84.3
Msa0238600 AT3G26230.1 21.543 311 204 7 195 471 163 467 1.22e-16 82.8
Msa0238600 AT3G26160.1 21.006 338 222 10 146 448 119 446 1.61e-16 82.4
Msa0238600 AT3G26280.1 22.626 358 230 10 146 467 121 467 1.91e-16 82.4
Msa0238600 AT3G26280.2 22.905 358 229 10 146 467 138 484 2.48e-16 82.0
Msa0238600 AT3G26170.1 20.507 434 290 14 87 477 54 475 3.04e-16 81.6
Msa0238600 AT3G26150.1 21.327 422 279 14 88 467 55 465 4.96e-16 81.3
Msa0238600 AT5G09970.1 21.951 410 256 13 103 467 112 502 7.62e-16 80.5
Msa0238600 AT3G26180.1 20.276 434 291 14 87 477 54 475 7.74e-16 80.5
Msa0238600 AT4G37430.1 23.864 440 258 19 85 470 46 462 8.26e-16 80.5
Msa0238600 AT1G13140.2 20.642 436 281 11 100 495 85 495 1.06e-15 80.1
Msa0238600 AT4G39510.1 27.076 277 159 9 255 497 237 504 1.11e-15 80.1
Msa0238600 AT5G52320.1 23.864 264 159 6 277 498 239 502 1.40e-15 79.7
Msa0238600 AT4G13770.1 21.622 444 285 14 81 471 34 467 1.47e-15 79.7
Msa0238600 AT5G24960.1 22.717 427 280 14 87 476 57 470 1.70e-15 79.3
Msa0238600 AT3G26190.1 23.009 452 290 19 89 498 54 489 1.80e-15 79.3
Msa0238600 AT5G67310.1 23.580 352 227 11 146 470 133 469 1.94e-15 79.3
Msa0238600 AT4G32170.1 21.868 439 279 18 108 497 79 502 1.99e-15 79.3
Msa0238600 AT5G35715.1 22.779 439 279 19 103 498 6 427 2.43e-15 78.6
Msa0238600 AT5G52320.2 24.701 251 145 7 277 485 239 487 2.65e-15 79.0
Msa0238600 AT1G13140.1 18.694 444 306 12 100 495 85 521 3.36e-15 78.6
Msa0238600 AT1G13150.1 21.053 418 270 13 129 495 106 514 3.73e-15 78.6
Msa0238600 AT5G44620.1 22.596 416 258 15 79 448 62 459 5.42e-15 77.8
Msa0238600 AT4G37340.1 25.000 360 212 12 146 470 122 458 5.68e-15 77.8
Msa0238600 AT2G26170.1 23.543 446 254 16 90 472 72 493 6.29e-15 77.8
Msa0238600 AT5G10600.1 23.832 428 260 17 87 470 71 476 6.54e-15 77.8
Msa0238600 AT1G11610.2 21.564 422 270 13 94 473 64 466 6.62e-15 77.4
Msa0238600 AT1G11610.1 21.564 422 270 13 94 473 64 466 7.69e-15 77.4
Msa0238600 AT3G26830.1 19.668 422 284 14 88 467 53 461 7.81e-15 77.4
Msa0238600 AT2G26170.2 23.557 433 244 16 103 472 2 410 7.84e-15 77.0
Msa0238600 AT4G37400.1 24.138 377 221 12 130 467 106 456 8.65e-15 77.0
Msa0238600 AT4G19230.2 20.609 427 261 12 85 469 44 434 1.28e-14 76.6
Msa0238600 AT4G36220.1 22.865 363 239 9 144 471 127 483 1.32e-14 76.6
Msa0238600 AT2G27690.1 22.248 427 266 15 108 486 76 484 1.56e-14 76.3
Msa0238600 AT2G42250.1 23.969 388 242 11 120 467 103 477 1.80e-14 76.3
Msa0238600 AT3G10560.1 22.588 425 268 15 86 467 72 478 2.71e-14 75.9
Msa0238600 AT4G19230.1 20.471 425 260 12 85 467 44 432 5.71e-14 74.3
Msa0238600 AT1G13100.1 20.335 418 277 12 94 467 56 461 8.19e-14 73.9
Msa0238600 AT2G30750.1 23.288 292 186 6 204 467 179 460 9.28e-14 73.9
Msa0238600 AT2G40890.1 20.465 430 290 9 78 467 42 459 9.45e-14 73.9
Msa0238600 AT1G74110.1 23.445 418 248 18 103 467 107 505 9.56e-14 73.9
Msa0238600 AT4G20240.1 22.911 371 238 10 86 421 56 413 1.04e-13 73.6
Msa0238600 AT1G65340.1 23.358 274 166 7 269 498 230 503 1.35e-13 73.6
Msa0238600 AT2G23180.1 23.053 321 195 9 214 497 206 511 2.21e-13 72.8
Msa0238600 AT5G42590.1 21.875 320 195 9 201 482 175 477 2.37e-13 72.8
Msa0238600 AT5G36220.1 23.120 359 219 12 146 470 129 464 2.44e-13 72.8
Msa0238600 AT4G13310.2 24.501 351 194 13 94 396 63 390 2.47e-13 72.0
Msa0238600 AT3G56630.1 23.844 411 235 18 129 485 97 483 2.74e-13 72.4
Msa0238600 AT1G34540.1 24.566 403 234 17 136 490 109 489 3.02e-13 72.4
Msa0238600 AT4G37330.1 24.485 388 217 16 127 470 100 455 3.48e-13 72.0
Msa0238600 AT1G66540.1 23.889 360 216 10 147 470 8 345 5.52e-13 70.9
Msa0238600 AT5G45340.1 19.580 429 259 11 85 467 44 432 7.14e-13 71.2
Msa0238600 AT2G25160.1 25.497 302 180 8 182 446 165 458 7.30e-13 71.2
Msa0238600 AT2G24180.1 22.565 421 273 17 87 467 60 467 7.65e-13 71.2
Msa0238600 AT4G37410.1 23.256 430 269 17 79 467 47 456 7.89e-13 71.2
Msa0238600 AT5G45340.2 19.580 429 259 11 85 467 44 432 8.01e-13 70.9
Msa0238600 AT1G11600.1 24.113 282 178 8 221 467 196 476 1.64e-12 70.1
Msa0238600 AT4G37370.1 23.889 360 215 12 146 470 122 457 2.37e-12 69.7
Msa0238600 AT4G15350.1 23.546 361 221 14 146 467 125 469 2.88e-12 69.3
Msa0238600 AT5G47990.1 22.295 305 196 9 195 467 180 475 3.36e-12 68.9
Msa0238600 AT5G07990.1 21.502 293 180 9 221 472 188 471 4.21e-12 68.9
Msa0238600 AT2G46660.1 22.906 406 249 17 103 467 113 495 4.42e-12 68.9
Msa0238600 AT3G26310.1 20.476 420 286 12 89 471 56 464 4.84e-12 68.6
Msa0238600 AT1G50520.1 21.508 358 231 10 146 467 135 478 4.94e-12 68.6
Msa0238600 AT3G26220.1 20.128 313 202 9 195 470 166 467 6.10e-12 68.2
Msa0238600 AT2G45970.1 26.966 178 89 4 325 464 302 476 6.20e-12 68.2
Msa0238600 AT1G01600.1 21.190 420 252 12 136 497 114 512 6.21e-12 68.6
Msa0238600 AT3G26180.2 20.921 239 157 6 263 477 111 341 6.37e-12 67.4
Msa0238600 AT1G66540.2 24.333 300 179 8 201 470 5 286 6.39e-12 67.4
Msa0238600 AT3G26200.1 20.879 455 300 18 87 498 52 489 6.94e-12 68.2
Msa0238600 AT3G20950.1 24.839 310 182 12 195 467 184 479 1.38e-11 67.4
Msa0238600 AT5G06900.1 19.410 407 285 10 94 467 65 461 1.57e-11 67.0
Msa0238600 AT3G26300.1 21.067 356 235 11 149 471 123 465 1.70e-11 67.0
Msa0238600 AT5G36220.2 22.549 306 188 9 195 470 32 318 3.29e-11 65.5
Msa0238600 AT3G61040.1 21.528 432 266 15 87 470 57 463 4.47e-11 65.5
Msa0238600 AT5G25120.1 20.952 420 282 13 89 471 55 461 7.15e-11 64.7
Msa0238600 AT3G20140.1 23.432 303 191 10 195 467 180 471 7.15e-11 65.1
Msa0238600 AT1G13110.1 18.820 356 246 10 146 467 121 467 7.52e-11 64.7

Find 134 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTATTCTTTACTTAATT+TGG 0.084119 2_2:-12352150 Msa0238600:five_prime_UTR
TGAAATCTTTAATCCCTTTA+TGG 0.123242 2_2:-12350990 Msa0238600:CDS
AGTAAAGAATAGAGAATTTA+TGG 0.135364 2_2:+12352158 None:intergenic
TGAATAATTAAATTTAAATT+TGG 0.150818 2_2:+12349414 None:intergenic
TGAATAGTCATTACTAAATT+TGG 0.170025 2_2:+12349792 None:intergenic
AGCCATGGCTTTATAGAATT+TGG 0.170075 2_2:+12352238 None:intergenic
AATTTGAAAATCTCATATTT+TGG 0.203025 2_2:+12351511 None:intergenic
TTCCATGATCTCTAATTTCT+TGG 0.206424 2_2:+12350721 None:intergenic
ACAATAATATGCGTTGTTAA+AGG 0.213081 2_2:-12349363 Msa0238600:three_prime_UTR
TTATGTTGAAGCAAAATAAT+TGG 0.233112 2_2:+12350032 None:intergenic
CAACAACTTGTTCAAATTTA+CGG 0.247474 2_2:-12351810 Msa0238600:intron
CAGGTCCATGGGTTTGGATT+TGG 0.260034 2_2:+12351869 None:intergenic
GTTGGCAAAGATATAAAGTT+TGG 0.266128 2_2:-12350092 Msa0238600:CDS
CCATCATTGGCTATAAATTA+TGG 0.266604 2_2:-12352065 Msa0238600:CDS
CTACTTCAACTATGCTTGTT+TGG 0.272405 2_2:-12350623 Msa0238600:CDS
AAATCTACCATTTGTTGCTT+TGG 0.272507 2_2:+12349947 None:intergenic
ATGAAGTGCGTGACACTTAA+TGG 0.290423 2_2:-12349478 Msa0238600:three_prime_UTR
TCATGGAAACAACAAGAATA+TGG 0.293660 2_2:-12350706 Msa0238600:CDS
AAGAGCTTCTCTAGCCTCTT+TGG 0.295504 2_2:+12351972 None:intergenic
CTTGCACGTTCTTGCCAATC+AGG 0.309729 2_2:+12350576 None:intergenic
ATCCGACAGGTCCATGGGTT+TGG 0.318750 2_2:+12351863 None:intergenic
TTCAACATAACAATGAACTA+TGG 0.332986 2_2:-12350019 Msa0238600:CDS
GGTTCCATTTCTCTGCTTGT+AGG 0.343300 2_2:+12352086 None:intergenic
AAATTTGGATAACATATAGA+TGG 0.345980 2_2:+12349429 None:intergenic
ACACATGGAGAGTGCTGAAT+TGG 0.369725 2_2:-12352007 Msa0238600:CDS
CAGGGAAGAATCCTTTCATT+TGG 0.370208 2_2:-12351615 Msa0238600:CDS
GTTATTTCTCGAAACGCATT+TGG 0.377764 2_2:-12351087 Msa0238600:CDS
ATCACCTACAAGCAGAGAAA+TGG 0.379501 2_2:-12352090 Msa0238600:exon
AAGAATCCTTTCATTTGGTC+TGG 0.379513 2_2:-12351610 Msa0238600:CDS
TGAACAAGTTGTTGAATGTA+TGG 0.379843 2_2:+12351819 None:intergenic
GCCACTGAGAATGACTTATT+AGG 0.381371 2_2:-12350765 Msa0238600:CDS
GATTAGTCTTACCTCCATAA+AGG 0.389113 2_2:+12350976 None:intergenic
CATCACTGTAACACTTGGTT+TGG 0.392948 2_2:-12352033 Msa0238600:CDS
GGAGAGTGCTGAATTGGATT+TGG 0.400703 2_2:-12352001 Msa0238600:CDS
ATTCTTATAGACTTGTGCTT+GGG 0.400709 2_2:-12351926 Msa0238600:CDS
ACTTGTGCTTGGGGACTTGA+AGG 0.409785 2_2:-12351916 Msa0238600:CDS
CATGATCTCTAATTTCTTGG+TGG 0.411298 2_2:+12350724 None:intergenic
TGCAAGTTATTCTACTTGGC+AGG 0.413849 2_2:-12350654 Msa0238600:CDS
ATTAGTCTTACCTCCATAAA+GGG 0.413978 2_2:+12350977 None:intergenic
CACCAAGAAATTAGAGATCA+TGG 0.420317 2_2:-12350723 Msa0238600:CDS
AAAAGTGGAGAAAGCATAGA+AGG 0.422271 2_2:-12351456 Msa0238600:CDS
CAGAGAAATGGAACCATCAT+TGG 0.422476 2_2:-12352078 Msa0238600:exon
GCACTGATATGATTAGCAAA+TGG 0.429712 2_2:-12351182 Msa0238600:CDS
AGATTGTATCCACCTGCATT+TGG 0.432958 2_2:-12350128 Msa0238600:CDS
CTTGAAGGATTCATATAAGA+TGG 0.437098 2_2:-12351901 Msa0238600:CDS
TTCACTATTGGAAGCAAAGA+TGG 0.441429 2_2:-12349874 Msa0238600:CDS
TGCTAAACGTTGAGTACAAA+TGG 0.454479 2_2:+12349556 None:intergenic
TAGAACCTCGTACAAAATCA+TGG 0.457849 2_2:+12350151 None:intergenic
TCAACATAACAATGAACTAT+GGG 0.459154 2_2:-12350018 Msa0238600:CDS
CACTGATATGATTAGCAAAT+GGG 0.461038 2_2:-12351181 Msa0238600:CDS
AATGACTATTCAGCCAGAAA+AGG 0.465992 2_2:-12349781 Msa0238600:CDS
CATGGAAACAACAAGAATAT+GGG 0.467549 2_2:-12350705 Msa0238600:CDS
CCATAATTTATAGCCAATGA+TGG 0.477451 2_2:+12352065 None:intergenic
TGAGCGCATTGGTGTGGACA+TGG 0.482172 2_2:+12352294 None:intergenic
GGAATTTCCAAAGCAACAAA+TGG 0.494078 2_2:-12349954 Msa0238600:CDS
CAAGAGAGAGAAAGCAATGA+AGG 0.494463 2_2:-12350796 Msa0238600:CDS
TGTTGAGTAGGTACCCTGAT+TGG 0.495576 2_2:-12350590 Msa0238600:CDS
TATAGAATTTGGTAAGGTGT+AGG 0.497097 2_2:+12352249 None:intergenic
GGACAATGATATTGTTGAGT+AGG 0.497423 2_2:-12350602 Msa0238600:CDS
TTTGGAGTATGAGCATAGGT+TGG 0.499601 2_2:+12349810 None:intergenic
GTCACGCACTTCATGACAAA+TGG 0.501275 2_2:+12349487 None:intergenic
GATCAGGTGAAATAGACATA+TGG 0.505098 2_2:-12351137 Msa0238600:CDS
GGAATGCAAGTTATTCTACT+TGG 0.506190 2_2:-12350658 Msa0238600:CDS
TTTGGAAGTAGTTACGAAGA+AGG 0.507891 2_2:-12351069 Msa0238600:CDS
TATATCATCCGACAGGTCCA+TGG 0.509546 2_2:+12351857 None:intergenic
GTGCAACTTGTGAGGAAACT+TGG 0.512966 2_2:+12351201 None:intergenic
GTACAAATGGTATAGCTTAG+TGG 0.516635 2_2:+12349569 None:intergenic
ATTCCATCAGCAAATCTCTC+AGG 0.523232 2_2:+12349972 None:intergenic
CATGGAAGTACCTGCTGGAG+TGG 0.525797 2_2:-12350066 Msa0238600:CDS
AATTCTTATAGACTTGTGCT+TGG 0.528002 2_2:-12351927 Msa0238600:CDS
ATGACTATTCAGCCAGAAAA+GGG 0.530494 2_2:-12349780 Msa0238600:CDS
CACTTGGTTTGGTATACACA+TGG 0.531670 2_2:-12352022 Msa0238600:CDS
TTACGAGAACAAGGATGTAA+AGG 0.531845 2_2:-12351951 Msa0238600:CDS
TGGCTTTATAGAATTTGGTA+AGG 0.531948 2_2:+12352243 None:intergenic
AGAACCTCGTACAAAATCAT+GGG 0.532420 2_2:+12350152 None:intergenic
AAGAAAACCTCCACTCCAGC+AGG 0.537685 2_2:+12350056 None:intergenic
TTCTTATAGACTTGTGCTTG+GGG 0.541211 2_2:-12351925 Msa0238600:CDS
ATATTCATCACTGTAACACT+TGG 0.543292 2_2:-12352038 Msa0238600:CDS
AGATATAAAGTTTGGAAACA+TGG 0.544012 2_2:-12350084 Msa0238600:CDS
ACATTGTCTTCAGATGGATC+AGG 0.548886 2_2:-12351153 Msa0238600:CDS
ATGAGTCTTGAAGATGTAGT+GGG 0.555679 2_2:-12350681 Msa0238600:CDS
TTGAAGGATTCATATAAGAT+GGG 0.557633 2_2:-12351900 Msa0238600:CDS
AGAGAGAAAGCAATGAAGGC+AGG 0.558808 2_2:-12350792 Msa0238600:CDS
CTGATTGGCAAGAACGTGCA+AGG 0.559141 2_2:-12350575 Msa0238600:CDS
TTTGGTGTTACTCGATATGT+TGG 0.561527 2_2:-12350110 Msa0238600:CDS
TTGCACGTTCTTGCCAATCA+GGG 0.561601 2_2:+12350577 None:intergenic
AGAAATGAAGCATCATTCAC+TGG 0.569094 2_2:-12352181 Msa0238600:five_prime_UTR
TAAATTTGGAGTATGAGCAT+AGG 0.569435 2_2:+12349806 None:intergenic
TACCAAATTCTATAAAGCCA+TGG 0.572331 2_2:-12352240 Msa0238600:five_prime_UTR
GGTTCTGTGAGAATCAGCCT+TGG 0.573057 2_2:+12351580 None:intergenic
AACTGAGAGTGTATCAGCCA+TGG 0.573408 2_2:+12352223 None:intergenic
GAACAAGTTGTTGAATGTAT+GGG 0.574114 2_2:+12351820 None:intergenic
GCAAGTTATTCTACTTGGCA+GGG 0.574471 2_2:-12350653 Msa0238600:CDS
ATCCAAACCCATGGACCTGT+CGG 0.574897 2_2:-12351865 Msa0238600:CDS
ATATCATCCGACAGGTCCAT+GGG 0.579220 2_2:+12351858 None:intergenic
GGATTTGGTTGAAGCCAAAG+AGG 0.579833 2_2:-12351986 Msa0238600:CDS
TTTGATCTTCAAAGAGAGCA+AGG 0.580321 2_2:-12351036 Msa0238600:CDS
AACAAGTGTGAAGCACATCA+TGG 0.581609 2_2:-12349534 Msa0238600:three_prime_UTR
GAGGCAACATTGTCTTCAGA+TGG 0.583162 2_2:-12351159 Msa0238600:CDS
AATGAGTCTTGAAGATGTAG+TGG 0.583983 2_2:-12350682 Msa0238600:CDS
GAGTCTTGAAGATGTAGTGG+GGG 0.584907 2_2:-12350679 Msa0238600:CDS
AATCTTTAATCCCTTTATGG+AGG 0.588764 2_2:-12350987 Msa0238600:intron
AATCCTGAGAGATTTGCTGA+TGG 0.589596 2_2:-12349975 Msa0238600:CDS
GTTGTTCCAGACCAAATGAA+AGG 0.593714 2_2:+12351604 None:intergenic
GAGAAGCTCTTACGAGAACA+AGG 0.594560 2_2:-12351960 Msa0238600:CDS
ATGCATCCTCCTTTGAGTAG+CGG 0.597575 2_2:+12350863 None:intergenic
GGAAGCCAAATCCAAACCCA+TGG 0.601321 2_2:-12351874 Msa0238600:CDS
TAATTCACGAGGGAGAAAAG+TGG 0.601713 2_2:-12351471 Msa0238600:CDS
GGAAACATGGAAGTACCTGC+TGG 0.602391 2_2:-12350071 Msa0238600:CDS
TTTGGATAACATATAGATGG+TGG 0.607845 2_2:+12349432 None:intergenic
GAGCGCATTGGTGTGGACAT+GGG 0.608386 2_2:+12352295 None:intergenic
TGAGTCTTGAAGATGTAGTG+GGG 0.608707 2_2:-12350680 Msa0238600:CDS
CATTATTGTTGTGAGCGCAT+TGG 0.609848 2_2:+12352283 None:intergenic
TTGTTGTGAGCGCATTGGTG+TGG 0.618038 2_2:+12352288 None:intergenic
TTGGCAAGAACGTGCAAGGG+AGG 0.621711 2_2:-12350571 Msa0238600:CDS
TCATATCAGTGCAACTTGTG+AGG 0.621779 2_2:+12351193 None:intergenic
TTATACCTACCGCTACTCAA+AGG 0.629628 2_2:-12350872 Msa0238600:CDS
GGATTCATATAAGATGGGAA+AGG 0.630211 2_2:-12351895 Msa0238600:CDS
GAGGCATTATATCATCCGAC+AGG 0.634533 2_2:+12351850 None:intergenic
GGAAGTACCTGCTGGAGTGG+AGG 0.635276 2_2:-12350063 Msa0238600:CDS
CGAGTAACACCAAATGCAGG+TGG 0.637298 2_2:+12350119 None:intergenic
TAGTGGTCTTATAATTCACG+AGG 0.639438 2_2:-12351482 Msa0238600:CDS
TATCGAGTAACACCAAATGC+AGG 0.641498 2_2:+12350116 None:intergenic
TGATTGGCAAGAACGTGCAA+GGG 0.654798 2_2:-12350574 Msa0238600:CDS
AGAGAATAGAGAATGCAACA+AGG 0.661993 2_2:+12352124 None:intergenic
TACCTACCGCTACTCAAAGG+AGG 0.667366 2_2:-12350869 Msa0238600:CDS
TGATATGATTAGCAAATGGG+AGG 0.667892 2_2:-12351178 Msa0238600:CDS
CAACATAACAATGAACTATG+GGG 0.670836 2_2:-12350017 Msa0238600:CDS
AGTGGTCTTATAATTCACGA+GGG 0.680839 2_2:-12351481 Msa0238600:CDS
ACCTAATAAGTCATTCTCAG+TGG 0.687179 2_2:+12350764 None:intergenic
GAACCTCGTACAAAATCATG+GGG 0.698612 2_2:+12350153 None:intergenic
ATCCTCCTTTGAGTAGCGGT+AGG 0.699607 2_2:+12350867 None:intergenic
TTTGGTCTGGAACAACACCA+AGG 0.709600 2_2:-12351597 Msa0238600:CDS
TGAATGTATGGGATGACACG+AGG 0.718439 2_2:+12351831 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAACAATATTTTTTTG+CGG - chr2_2:12349984-12350003 Msa0238600:CDS 10.0%
!! TTAACTACATATTTATAAAT+TGG - chr2_2:12350269-12350288 Msa0238600:intron 10.0%
!! AATTACAATATAAACTTTAT+GGG + chr2_2:12351991-12352010 None:intergenic 10.0%
!! TAATTACAATATAAACTTTA+TGG + chr2_2:12351992-12352011 None:intergenic 10.0%
!!! AATTTGAAAATCTCATATTT+TGG + chr2_2:12350147-12350166 None:intergenic 15.0%
!!! ATTTTCAAATTTCTATTTAG+TGG - chr2_2:12350156-12350175 Msa0238600:CDS 15.0%
!! TTCTAATATAGTGATATATT+AGG - chr2_2:12350725-12350744 Msa0238600:CDS 15.0%
!!! AGATTTATATATTTTCCATT+TGG - chr2_2:12351725-12351744 Msa0238600:intron 15.0%
!! AGTAAAGAATAGAGAATTTA+TGG + chr2_2:12349500-12349519 None:intergenic 20.0%
!! TCTCTATTCTTTACTTAATT+TGG - chr2_2:12349505-12349524 Msa0238600:three_prime_UTR 20.0%
!!! TTTGTTTTATTAAACTCCTA+AGG + chr2_2:12349916-12349935 None:intergenic 20.0%
!! TGCATTCAATTACATTTAAA+AGG + chr2_2:12350022-12350041 None:intergenic 20.0%
!!! TTTTAAATGTAATTGAATGC+AGG - chr2_2:12350021-12350040 Msa0238600:CDS 20.0%
!! TTTAAATGTAATTGAATGCA+GGG - chr2_2:12350022-12350041 Msa0238600:CDS 20.0%
!!! TGACTATTATTTTTACTTGT+AGG - chr2_2:12350759-12350778 Msa0238600:CDS 20.0%
!!! TCAAAAGATGCAATTTTTAA+AGG + chr2_2:12351213-12351232 None:intergenic 20.0%
!!! TTCTTTTTGTTTTAGGAAAT+CGG - chr2_2:12351383-12351402 Msa0238600:intron 20.0%
!!! TGCAATTGTTTTTTAAAACT+TGG + chr2_2:12351412-12351431 None:intergenic 20.0%
!! TTATGTTGAAGCAAAATAAT+TGG + chr2_2:12351626-12351645 None:intergenic 20.0%
!!! TTTATATATTTTCCATTTGG+AGG - chr2_2:12351728-12351747 Msa0238600:intron 20.0%
!!! TTATATATTTTCCATTTGGA+GGG - chr2_2:12351729-12351748 Msa0238600:intron 20.0%
!! TGAATAGTCATTACTAAATT+TGG + chr2_2:12351866-12351885 None:intergenic 20.0%
!! AAATTTGGATAACATATAGA+TGG + chr2_2:12352229-12352248 None:intergenic 20.0%
! TTGAAGGATTCATATAAGAT+GGG - chr2_2:12349755-12349774 Msa0238600:CDS 25.0%
!! CAACAACTTGTTCAAATTTA+CGG - chr2_2:12349845-12349864 Msa0238600:CDS 25.0%
! TTTCCAGTTAGAAAAATTGA+AGG - chr2_2:12350236-12350255 Msa0238600:intron 25.0%
!! TAACCTTCAATTTTTCTAAC+TGG + chr2_2:12350242-12350261 None:intergenic 25.0%
! TGAAATCTTTAATCCCTTTA+TGG - chr2_2:12350665-12350684 Msa0238600:CDS 25.0%
!!! GAGGAAGTATTACAAATATT+TGG - chr2_2:12351103-12351122 Msa0238600:CDS 25.0%
! TTATTTAATCCTTCATAGTC+TGG + chr2_2:12351139-12351158 None:intergenic 25.0%
! TTCCTAAAACAAAAAGAACT+CGG + chr2_2:12351381-12351400 None:intergenic 25.0%
! AGATATAAAGTTTGGAAACA+TGG - chr2_2:12351571-12351590 Msa0238600:CDS 25.0%
! TTCAACATAACAATGAACTA+TGG - chr2_2:12351636-12351655 Msa0238600:intron 25.0%
! TCAACATAACAATGAACTAT+GGG - chr2_2:12351637-12351656 Msa0238600:intron 25.0%
!! TATATATTTTCCATTTGGAG+GGG - chr2_2:12351730-12351749 Msa0238600:intron 25.0%
! ACAATAATATGCGTTGTTAA+AGG - chr2_2:12352292-12352311 Msa0238600:five_prime_UTR 25.0%
TATAGAATTTGGTAAGGTGT+AGG + chr2_2:12349409-12349428 None:intergenic 30.0%
!! TGGCTTTATAGAATTTGGTA+AGG + chr2_2:12349415-12349434 None:intergenic 30.0%
TACCAAATTCTATAAAGCCA+TGG - chr2_2:12349415-12349434 Msa0238600:three_prime_UTR 30.0%
CCATAATTTATAGCCAATGA+TGG + chr2_2:12349593-12349612 None:intergenic 30.0%
! CCATCATTGGCTATAAATTA+TGG - chr2_2:12349590-12349609 Msa0238600:intron 30.0%
ATATTCATCACTGTAACACT+TGG - chr2_2:12349617-12349636 Msa0238600:intron 30.0%
AATTCTTATAGACTTGTGCT+TGG - chr2_2:12349728-12349747 Msa0238600:exon 30.0%
ATTCTTATAGACTTGTGCTT+GGG - chr2_2:12349729-12349748 Msa0238600:exon 30.0%
CTTGAAGGATTCATATAAGA+TGG - chr2_2:12349754-12349773 Msa0238600:CDS 30.0%
GAACAAGTTGTTGAATGTAT+GGG + chr2_2:12349838-12349857 None:intergenic 30.0%
TGAACAAGTTGTTGAATGTA+TGG + chr2_2:12349839-12349858 None:intergenic 30.0%
! AAGACATCTTTTATTAGCTC+TGG + chr2_2:12350099-12350118 None:intergenic 30.0%
GACACAAAATTTGAATCCTT+TGG - chr2_2:12350397-12350416 Msa0238600:intron 30.0%
AATAAGGAAGAAACAACCAA+AGG + chr2_2:12350416-12350435 None:intergenic 30.0%
CACTGATATGATTAGCAAAT+GGG - chr2_2:12350474-12350493 Msa0238600:intron 30.0%
!! ATCACTTGTCAAGTTTTGTA+GGG + chr2_2:12350548-12350567 None:intergenic 30.0%
AATCTTTAATCCCTTTATGG+AGG - chr2_2:12350668-12350687 Msa0238600:CDS 30.0%
!! ATTAGTCTTACCTCCATAAA+GGG + chr2_2:12350681-12350700 None:intergenic 30.0%
TTCCATGATCTCTAATTTCT+TGG + chr2_2:12350937-12350956 None:intergenic 30.0%
TCATGGAAACAACAAGAATA+TGG - chr2_2:12350949-12350968 Msa0238600:intron 30.0%
CATGGAAACAACAAGAATAT+GGG - chr2_2:12350950-12350969 Msa0238600:intron 30.0%
AACAAAAAACCAGACTATGA+AGG - chr2_2:12351127-12351146 Msa0238600:CDS 30.0%
!!! TACCGAGTTCTTTTTGTTTT+AGG - chr2_2:12351376-12351395 Msa0238600:intron 30.0%
GTTGGCAAAGATATAAAGTT+TGG - chr2_2:12351563-12351582 Msa0238600:CDS 30.0%
CAACATAACAATGAACTATG+GGG - chr2_2:12351638-12351657 Msa0238600:intron 30.0%
! AAATCTACCATTTGTTGCTT+TGG + chr2_2:12351711-12351730 None:intergenic 30.0%
! ATATATTTTCCATTTGGAGG+GGG - chr2_2:12351731-12351750 Msa0238600:intron 30.0%
! TAAATTTGGAGTATGAGCAT+AGG + chr2_2:12351852-12351871 None:intergenic 30.0%
! AGCATCACAGTAAGATTTTA+AGG - chr2_2:12351936-12351955 Msa0238600:CDS 30.0%
TTTGGATAACATATAGATGG+TGG + chr2_2:12352226-12352245 None:intergenic 30.0%
!! AGCCATGGCTTTATAGAATT+TGG + chr2_2:12349420-12349439 None:intergenic 35.0%
! AGAAATGAAGCATCATTCAC+TGG - chr2_2:12349474-12349493 Msa0238600:three_prime_UTR 35.0%
AGAGAATAGAGAATGCAACA+AGG + chr2_2:12349534-12349553 None:intergenic 35.0%
TTACGAGAACAAGGATGTAA+AGG - chr2_2:12349704-12349723 Msa0238600:intron 35.0%
TTCTTATAGACTTGTGCTTG+GGG - chr2_2:12349730-12349749 Msa0238600:exon 35.0%
GGATTCATATAAGATGGGAA+AGG - chr2_2:12349760-12349779 Msa0238600:CDS 35.0%
AAGAATCCTTTCATTTGGTC+TGG - chr2_2:12350045-12350064 Msa0238600:CDS 35.0%
!! TAGTGGTCTTATAATTCACG+AGG - chr2_2:12350173-12350192 Msa0238600:intron 35.0%
!! AGTGGTCTTATAATTCACGA+GGG - chr2_2:12350174-12350193 Msa0238600:intron 35.0%
! AAAAGTGGAGAAAGCATAGA+AGG - chr2_2:12350199-12350218 Msa0238600:intron 35.0%
! GCACTGATATGATTAGCAAA+TGG - chr2_2:12350473-12350492 Msa0238600:intron 35.0%
TGATATGATTAGCAAATGGG+AGG - chr2_2:12350477-12350496 Msa0238600:intron 35.0%
GATCAGGTGAAATAGACATA+TGG - chr2_2:12350518-12350537 Msa0238600:intron 35.0%
!! CATCACTTGTCAAGTTTTGT+AGG + chr2_2:12350549-12350568 None:intergenic 35.0%
!! GTTATTTCTCGAAACGCATT+TGG - chr2_2:12350568-12350587 Msa0238600:intron 35.0%
TTTGGAAGTAGTTACGAAGA+AGG - chr2_2:12350586-12350605 Msa0238600:CDS 35.0%
TTTGATCTTCAAAGAGAGCA+AGG - chr2_2:12350619-12350638 Msa0238600:CDS 35.0%
!! GATTAGTCTTACCTCCATAA+AGG + chr2_2:12350682-12350701 None:intergenic 35.0%
ACCTAATAAGTCATTCTCAG+TGG + chr2_2:12350894-12350913 None:intergenic 35.0%
CATGATCTCTAATTTCTTGG+TGG + chr2_2:12350934-12350953 None:intergenic 35.0%
CACCAAGAAATTAGAGATCA+TGG - chr2_2:12350932-12350951 Msa0238600:intron 35.0%
AATGAGTCTTGAAGATGTAG+TGG - chr2_2:12350973-12350992 Msa0238600:intron 35.0%
ATGAGTCTTGAAGATGTAGT+GGG - chr2_2:12350974-12350993 Msa0238600:intron 35.0%
GGAATGCAAGTTATTCTACT+TGG - chr2_2:12350997-12351016 Msa0238600:CDS 35.0%
CTACTTCAACTATGCTTGTT+TGG - chr2_2:12351032-12351051 Msa0238600:CDS 35.0%
GGACAATGATATTGTTGAGT+AGG - chr2_2:12351053-12351072 Msa0238600:CDS 35.0%
! GCATCTTTTGAACTCGTTTA+AGG - chr2_2:12351222-12351241 Msa0238600:intron 35.0%
!! CTTTTGAACTCGTTTAAGGT+TGG - chr2_2:12351226-12351245 Msa0238600:intron 35.0%
AGAACCTCGTACAAAATCAT+GGG + chr2_2:12351506-12351525 None:intergenic 35.0%
TAGAACCTCGTACAAAATCA+TGG + chr2_2:12351507-12351526 None:intergenic 35.0%
!! TTTGGTGTTACTCGATATGT+TGG - chr2_2:12351545-12351564 Msa0238600:CDS 35.0%
GGAATTTCCAAAGCAACAAA+TGG - chr2_2:12351701-12351720 Msa0238600:intron 35.0%
! GGGACAAAACTTTTCACTAT+TGG - chr2_2:12351769-12351788 Msa0238600:intron 35.0%
TTCACTATTGGAAGCAAAGA+TGG - chr2_2:12351781-12351800 Msa0238600:intron 35.0%
AATGACTATTCAGCCAGAAA+AGG - chr2_2:12351874-12351893 Msa0238600:CDS 35.0%
ATGACTATTCAGCCAGAAAA+GGG - chr2_2:12351875-12351894 Msa0238600:CDS 35.0%
GTACAAATGGTATAGCTTAG+TGG + chr2_2:12352089-12352108 None:intergenic 35.0%
TGCTAAACGTTGAGTACAAA+TGG + chr2_2:12352102-12352121 None:intergenic 35.0%
! GATGGTGGCAAAAATATAGA+TGG + chr2_2:12352211-12352230 None:intergenic 35.0%
CATTATTGTTGTGAGCGCAT+TGG + chr2_2:12349375-12349394 None:intergenic 40.0%
ATCACCTACAAGCAGAGAAA+TGG - chr2_2:12349565-12349584 Msa0238600:three_prime_UTR 40.0%
CAGAGAAATGGAACCATCAT+TGG - chr2_2:12349577-12349596 Msa0238600:intron 40.0%
CATCACTGTAACACTTGGTT+TGG - chr2_2:12349622-12349641 Msa0238600:intron 40.0%
!! CACTTGGTTTGGTATACACA+TGG - chr2_2:12349633-12349652 Msa0238600:intron 40.0%
TCAATCGAGCAACACTTACA+TGG - chr2_2:12349883-12349902 Msa0238600:CDS 40.0%
CAGGGAAGAATCCTTTCATT+TGG - chr2_2:12350040-12350059 Msa0238600:CDS 40.0%
GTTGTTCCAGACCAAATGAA+AGG + chr2_2:12350054-12350073 None:intergenic 40.0%
TAATTCACGAGGGAGAAAAG+TGG - chr2_2:12350184-12350203 Msa0238600:intron 40.0%
! CTTGCACAAGTGTATTTTGC+AGG + chr2_2:12350326-12350345 None:intergenic 40.0%
CCATGATCTGTGGTGTAATA+AGG + chr2_2:12350432-12350451 None:intergenic 40.0%
CCTTATTACACCACAGATCA+TGG - chr2_2:12350429-12350448 Msa0238600:intron 40.0%
TCATATCAGTGCAACTTGTG+AGG + chr2_2:12350465-12350484 None:intergenic 40.0%
ACATTGTCTTCAGATGGATC+AGG - chr2_2:12350502-12350521 Msa0238600:intron 40.0%
!! CTTGTCAAGTTTTGTAGGGA+AGG + chr2_2:12350544-12350563 None:intergenic 40.0%
TTATACCTACCGCTACTCAA+AGG - chr2_2:12350783-12350802 Msa0238600:CDS 40.0%
CAAGAGAGAGAAAGCAATGA+AGG - chr2_2:12350859-12350878 Msa0238600:CDS 40.0%
GCCACTGAGAATGACTTATT+AGG - chr2_2:12350890-12350909 Msa0238600:intron 40.0%
TGAGTCTTGAAGATGTAGTG+GGG - chr2_2:12350975-12350994 Msa0238600:intron 40.0%
TGCAAGTTATTCTACTTGGC+AGG - chr2_2:12351001-12351020 Msa0238600:CDS 40.0%
GCAAGTTATTCTACTTGGCA+GGG - chr2_2:12351002-12351021 Msa0238600:CDS 40.0%
GAACCTCGTACAAAATCATG+GGG + chr2_2:12351505-12351524 None:intergenic 40.0%
AGATTGTATCCACCTGCATT+TGG - chr2_2:12351527-12351546 Msa0238600:CDS 40.0%
TATCGAGTAACACCAAATGC+AGG + chr2_2:12351542-12351561 None:intergenic 40.0%
!! AATCCTGAGAGATTTGCTGA+TGG - chr2_2:12351680-12351699 Msa0238600:intron 40.0%
ATTCCATCAGCAAATCTCTC+AGG + chr2_2:12351686-12351705 None:intergenic 40.0%
! TTTTGTCCCATACAGACTCT+AGG + chr2_2:12351758-12351777 None:intergenic 40.0%
! TTTGGAGTATGAGCATAGGT+TGG + chr2_2:12351848-12351867 None:intergenic 40.0%
! ATAACATGAGCACCCTTTTC+TGG + chr2_2:12351890-12351909 None:intergenic 40.0%
ACCTGTAGGTGCAAGAAAAA+TGG + chr2_2:12352065-12352084 None:intergenic 40.0%
TATAGCTTAGTGGTACCTGT+AGG + chr2_2:12352079-12352098 None:intergenic 40.0%
AACAAGTGTGAAGCACATCA+TGG - chr2_2:12352121-12352140 Msa0238600:five_prime_UTR 40.0%
ATGAAGTGCGTGACACTTAA+TGG - chr2_2:12352177-12352196 Msa0238600:five_prime_UTR 40.0%
! AACTGAGAGTGTATCAGCCA+TGG + chr2_2:12349435-12349454 None:intergenic 45.0%
GGTTCCATTTCTCTGCTTGT+AGG + chr2_2:12349572-12349591 None:intergenic 45.0%
!! ACACATGGAGAGTGCTGAAT+TGG - chr2_2:12349648-12349667 Msa0238600:intron 45.0%
!! GGAGAGTGCTGAATTGGATT+TGG - chr2_2:12349654-12349673 Msa0238600:intron 45.0%
! GGATTTGGTTGAAGCCAAAG+AGG - chr2_2:12349669-12349688 Msa0238600:intron 45.0%
AAGAGCTTCTCTAGCCTCTT+TGG + chr2_2:12349686-12349705 None:intergenic 45.0%
GAGAAGCTCTTACGAGAACA+AGG - chr2_2:12349695-12349714 Msa0238600:intron 45.0%
ATATCATCCGACAGGTCCAT+GGG + chr2_2:12349800-12349819 None:intergenic 45.0%
TATATCATCCGACAGGTCCA+TGG + chr2_2:12349801-12349820 None:intergenic 45.0%
! GAGGCATTATATCATCCGAC+AGG + chr2_2:12349808-12349827 None:intergenic 45.0%
TGAATGTATGGGATGACACG+AGG + chr2_2:12349827-12349846 None:intergenic 45.0%
CTTACATGGTCACAAGCCTT+AGG - chr2_2:12349897-12349916 Msa0238600:CDS 45.0%
! TTTGGTCTGGAACAACACCA+AGG - chr2_2:12350058-12350077 Msa0238600:CDS 45.0%
!! AAACTTGGTGCCATGATCTG+TGG + chr2_2:12350442-12350461 None:intergenic 45.0%
GTGCAACTTGTGAGGAAACT+TGG + chr2_2:12350457-12350476 None:intergenic 45.0%
GAGGCAACATTGTCTTCAGA+TGG - chr2_2:12350496-12350515 Msa0238600:intron 45.0%
ATGCATCCTCCTTTGAGTAG+CGG + chr2_2:12350795-12350814 None:intergenic 45.0%
AGAGAGAAAGCAATGAAGGC+AGG - chr2_2:12350863-12350882 Msa0238600:CDS 45.0%
GAGTCTTGAAGATGTAGTGG+GGG - chr2_2:12350976-12350995 Msa0238600:intron 45.0%
TGTTGAGTAGGTACCCTGAT+TGG - chr2_2:12351065-12351084 Msa0238600:CDS 45.0%
TTGCACGTTCTTGCCAATCA+GGG + chr2_2:12351081-12351100 None:intergenic 45.0%
TGATTGGCAAGAACGTGCAA+GGG - chr2_2:12351081-12351100 Msa0238600:CDS 45.0%
!! TTTAAGGTTGGCCTAGTGGT+TGG - chr2_2:12351238-12351257 Msa0238600:intron 45.0%
AAGATCTCAAGCCAACCACT+AGG + chr2_2:12351252-12351271 None:intergenic 45.0%
!! TAGTGGTTGGCTTGAGATCT+TGG - chr2_2:12351251-12351270 Msa0238600:intron 45.0%
CTTGGAGTTTGCACATCTCA+AGG - chr2_2:12351269-12351288 Msa0238600:intron 45.0%
TTTGCACATCTCAAGGTCTC+AGG - chr2_2:12351276-12351295 Msa0238600:intron 45.0%
!! GTCCATACTCTGGCTTTAGT+CGG - chr2_2:12351340-12351359 Msa0238600:intron 45.0%
AACCGACTAAAGCCAGAGTA+TGG + chr2_2:12351345-12351364 None:intergenic 45.0%
! GCTTTAGTCGGTTCTTGGAT+CGG - chr2_2:12351352-12351371 Msa0238600:intron 45.0%
!!! GCCATTTTTCTTGCACCTAC+AGG - chr2_2:12352061-12352080 Msa0238600:CDS 45.0%
GTCACGCACTTCATGACAAA+TGG + chr2_2:12352171-12352190 None:intergenic 45.0%
!! TAAAAATATATAAACTTTAT+TGG - chr2_2:12351441-12351460 Msa0238600:CDS 5.0%
!! TGAATAATTAAATTTAAATT+TGG + chr2_2:12352244-12352263 None:intergenic 5.0%
! TTGTTGTGAGCGCATTGGTG+TGG + chr2_2:12349370-12349389 None:intergenic 50.0%
ACTTGTGCTTGGGGACTTGA+AGG - chr2_2:12349739-12349758 Msa0238600:exon 50.0%
GGAAGCCAAATCCAAACCCA+TGG - chr2_2:12349781-12349800 Msa0238600:CDS 50.0%
CAGGTCCATGGGTTTGGATT+TGG + chr2_2:12349789-12349808 None:intergenic 50.0%
ATCCAAACCCATGGACCTGT+CGG - chr2_2:12349790-12349809 Msa0238600:CDS 50.0%
GGTTCTGTGAGAATCAGCCT+TGG + chr2_2:12350078-12350097 None:intergenic 50.0%
TACCTACCGCTACTCAAAGG+AGG - chr2_2:12350786-12350805 Msa0238600:CDS 50.0%
ATCCTCCTTTGAGTAGCGGT+AGG + chr2_2:12350791-12350810 None:intergenic 50.0%
CTTGCACGTTCTTGCCAATC+AGG + chr2_2:12351082-12351101 None:intergenic 50.0%
CTGATTGGCAAGAACGTGCA+AGG - chr2_2:12351080-12351099 Msa0238600:CDS 50.0%
!! CTCGTTTAAGGTTGGCCTAG+TGG - chr2_2:12351234-12351253 Msa0238600:intron 50.0%
!! CTCTGGCTTTAGTCGGTTCT+TGG - chr2_2:12351347-12351366 Msa0238600:intron 50.0%
! GCTCCCCATGATTTTGTACG+AGG - chr2_2:12351499-12351518 Msa0238600:CDS 50.0%
CGAGTAACACCAAATGCAGG+TGG + chr2_2:12351539-12351558 None:intergenic 50.0%
!! GGAAACATGGAAGTACCTGC+TGG - chr2_2:12351584-12351603 Msa0238600:CDS 50.0%
AAGAAAACCTCCACTCCAGC+AGG + chr2_2:12351602-12351621 None:intergenic 50.0%
! GAGCGCATTGGTGTGGACAT+GGG + chr2_2:12349363-12349382 None:intergenic 55.0%
! TGAGCGCATTGGTGTGGACA+TGG + chr2_2:12349364-12349383 None:intergenic 55.0%
ATCCGACAGGTCCATGGGTT+TGG + chr2_2:12349795-12349814 None:intergenic 55.0%
TTGGCAAGAACGTGCAAGGG+AGG - chr2_2:12351084-12351103 Msa0238600:CDS 55.0%
GTCTCAGGTTTGATTCCCCC+TGG - chr2_2:12351291-12351310 Msa0238600:intron 55.0%
AACTTAACGCCAAGGGCCAG+GGG + chr2_2:12351310-12351329 None:intergenic 55.0%
GAACTTAACGCCAAGGGCCA+GGG + chr2_2:12351311-12351330 None:intergenic 55.0%
TGAACTTAACGCCAAGGGCC+AGG + chr2_2:12351312-12351331 None:intergenic 55.0%
GCCCTTGGCGTTAAGTTCAG+CGG - chr2_2:12351313-12351332 Msa0238600:intron 55.0%
CCCGCTGAACTTAACGCCAA+GGG + chr2_2:12351317-12351336 None:intergenic 55.0%
CCCTTGGCGTTAAGTTCAGC+GGG - chr2_2:12351314-12351333 Msa0238600:intron 55.0%
!! CATGGAAGTACCTGCTGGAG+TGG - chr2_2:12351589-12351608 Msa0238600:CDS 55.0%
!! ACTCTAGGACCCCCTCCAAA+TGG + chr2_2:12351743-12351762 None:intergenic 55.0%
AGGGGGTCCTAGAGTCTGTA+TGG - chr2_2:12351748-12351767 Msa0238600:intron 55.0%
GGGGGTCCTAGAGTCTGTAT+GGG - chr2_2:12351749-12351768 Msa0238600:intron 55.0%
GTTTGATTCCCCCTGGCCCT+TGG - chr2_2:12351298-12351317 Msa0238600:intron 60.0%
ACTTAACGCCAAGGGCCAGG+GGG + chr2_2:12351309-12351328 None:intergenic 60.0%
GCCCGCTGAACTTAACGCCA+AGG + chr2_2:12351318-12351337 None:intergenic 60.0%
CAGCGGGCAAGTCCATACTC+TGG - chr2_2:12351330-12351349 Msa0238600:intron 60.0%
!! GGAAGTACCTGCTGGAGTGG+AGG - chr2_2:12351592-12351611 Msa0238600:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 12349354 12352323 12349354 ID=Msa0238600;Name=Msa0238600
chr2_2 mRNA 12349354 12352323 12349354 ID=Msa0238600-mRNA-1;Parent=Msa0238600;Name=Msa0238600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=230|0.8|0.83|1|0.8|0.83|6|267|500
chr2_2 exon 12349354 12349594 12349354 ID=Msa0238600-mRNA-1:exon:5237;Parent=Msa0238600-mRNA-1
chr2_2 exon 12349720 12350177 12349720 ID=Msa0238600-mRNA-1:exon:5236;Parent=Msa0238600-mRNA-1
chr2_2 exon 12350569 12350896 12350569 ID=Msa0238600-mRNA-1:exon:5235;Parent=Msa0238600-mRNA-1
chr2_2 exon 12350988 12351232 12350988 ID=Msa0238600-mRNA-1:exon:5234;Parent=Msa0238600-mRNA-1
chr2_2 exon 12351420 12351634 12351420 ID=Msa0238600-mRNA-1:exon:5233;Parent=Msa0238600-mRNA-1
chr2_2 exon 12351811 12352323 12351811 ID=Msa0238600-mRNA-1:exon:5232;Parent=Msa0238600-mRNA-1
chr2_2 five_prime_UTR 12352094 12352323 12352094 ID=Msa0238600-mRNA-1:five_prime_utr;Parent=Msa0238600-mRNA-1
chr2_2 CDS 12351811 12352093 12351811 ID=Msa0238600-mRNA-1:cds;Parent=Msa0238600-mRNA-1
chr2_2 CDS 12351420 12351634 12351420 ID=Msa0238600-mRNA-1:cds;Parent=Msa0238600-mRNA-1
chr2_2 CDS 12350988 12351232 12350988 ID=Msa0238600-mRNA-1:cds;Parent=Msa0238600-mRNA-1
chr2_2 CDS 12350569 12350896 12350569 ID=Msa0238600-mRNA-1:cds;Parent=Msa0238600-mRNA-1
chr2_2 CDS 12349746 12350177 12349746 ID=Msa0238600-mRNA-1:cds;Parent=Msa0238600-mRNA-1
chr2_2 three_prime_UTR 12349720 12349745 12349720 ID=Msa0238600-mRNA-1:three_prime_utr;Parent=Msa0238600-mRNA-1
chr2_2 three_prime_UTR 12349354 12349594 12349354 ID=Msa0238600-mRNA-1:three_prime_utr;Parent=Msa0238600-mRNA-1
Gene Sequence

>Msa0238600

ATGGAACCATCATTGGCTATAAATTATGGCATAATATTCATCACTGTAACACTTGGTTTGGTATACACATGGAGAGTGCTGAATTGGATTTGGTTGAAGCCAAAGAGGCTAGAGAAGCTCTTACGAGAACAAGGATGTAAAGGAAATTCTTATAGACTTGTGCTTGGGGACTTGAAGGATTCATATAAGATGGGAAAGGAAGCCAAATCCAAACCCATGGACCTGTCGGATGATATAATGCCTCGTGTCATCCCATACATTCAACAACTTGTTCAAATTTACGGGAAGAATCCTTTCATTTGGTCTGGAACAACACCAAGGCTGATTCTCACAGAACCAGAGCTAATAAAAGATGTCTTAAACAGAACTTCTGAATTACAAAAGCCAAAATATGAGATTTTCAAATTTCTATTTAGTGGTCTTATAATTCACGAGGGAGAAAAGTGGAGAAAGCATAGAAGGCTAATGAACGCTGCTTTCCAGTTAGAAAAATTGAAGATCATGGCACCAAGTTTCCTCACAAGTTGCACTGATATGATTAGCAAATGGGAGGCAACATTGTCTTCAGATGGATCAGGTGAAATAGACATATGGCCTTCCCTACAAAACTTGACAAGTGATGTTATTTCTCGAAACGCATTTGGAAGTAGTTACGAAGAAGGAAAAAGAATATTTGATCTTCAAAGAGAGCAAGGTGAACTTGTAATGAAAAATCTTGTGAAATCTTTAATCCCTTTATGGAGGTTTATACCTACCGCTACTCAAAGGAGGATGCATGAAATTGAAAAAGATATAGATTCTTCTCTTAGATATATAATTAACAAGAGAGAGAAAGCAATGAAGGCAGGTGAAGCCACTGAGAATGACTTATTAGGTCTTCTTCTAGAGTCAAACCACCAAGAAATTAGAGATCATGGAAACAACAAGAATATGGGAATGAGTCTTGAAGATGTAGTGGGGGAATGCAAGTTATTCTACTTGGCAGGGCAAGAATCTACTTCAACTATGCTTGTTTGGACAATGATATTGTTGAGTAGGTACCCTGATTGGCAAGAACGTGCAAGGGAGGAACTCCCCATGATTTTGTACGAGGTTCTAAGATTGTATCCACCTGCATTTGGTGTTACTCGATATGTTGGCAAAGATATAAAGTTTGGAAACATGGAAGTACCTGCTGGAGTGGAGGTTTTCTTACCAATTATTTTGCTTCAACATAACAATGAACTATGGGGTGATGATGCAAAGATGTTCAATCCTGAGAGATTTGCTGATGGAATTTCCAAAGCAACAAATGGTAGATTTATATATTTTCCATTTGGAGGGGGTCCTAGAGTCTGTATGGGACAAAACTTTTCACTATTGGAAGCAAAGATGGCAGTGTCAATGATTTTACAAAATTTTTACTTTGAACTGTCTCCAACCTATGCTCATACTCCAAATTTAGTAATGACTATTCAGCCAGAAAAGGGTGCTCATGTTATTCTACGCAAAGTGAAAACATAA
Protein sequence

>Msa0238600

MEPSLAINYGIIFITVTLGLVYTWRVLNWIWLKPKRLEKLLREQGCKGNSYRLVLGDLKDSYKMGKEAKSKPMDLSDDIMPRVIPYIQQLVQIYGKNPFIWSGTTPRLILTEPELIKDVLNRTSELQKPKYEIFKFLFSGLIIHEGEKWRKHRRLMNAAFQLEKLKIMAPSFLTSCTDMISKWEATLSSDGSGEIDIWPSLQNLTSDVISRNAFGSSYEEGKRIFDLQREQGELVMKNLVKSLIPLWRFIPTATQRRMHEIEKDIDSSLRYIINKREKAMKAGEATENDLLGLLLESNHQEIRDHGNNKNMGMSLEDVVGECKLFYLAGQESTSTMLVWTMILLSRYPDWQERAREELPMILYEVLRLYPPAFGVTRYVGKDIKFGNMEVPAGVEVFLPIILLQHNNELWGDDAKMFNPERFADGISKATNGRFIYFPFGGGPRVCMGQNFSLLEAKMAVSMILQNFYFELSPTYAHTPNLVMTIQPEKGAHVILRKVKT*