AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0338760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0338760 MtrunA17_Chr2g0288661 94.610 538 11 1 1 538 1 520 0.0 1040
Msa0338760 MtrunA17_Chr2g0307291 66.357 538 163 1 1 538 1 520 0.0 760
Msa0338760 MtrunA17_Chr2g0307301 65.799 538 166 1 1 538 1 520 0.0 757
Msa0338760 MtrunA17_Chr2g0313751 66.919 529 157 1 10 538 35 545 0.0 750
Msa0338760 MtrunA17_Chr5g0446131 64.650 529 169 1 10 538 6 516 0.0 719
Msa0338760 MtrunA17_Chr2g0313781 63.148 540 168 3 11 537 8 529 0.0 716
Msa0338760 MtrunA17_Chr2g0313821 62.760 529 178 2 11 538 8 518 0.0 711
Msa0338760 MtrunA17_Chr2g0313801 62.500 528 179 2 11 537 8 517 0.0 704
Msa0338760 MtrunA17_Chr2g0313791 61.932 528 177 3 11 537 8 512 0.0 698
Msa0338760 MtrunA17_Chr2g0313761 67.118 517 152 1 22 538 15 513 0.0 690
Msa0338760 MtrunA17_Chr2g0313831 60.409 538 191 3 1 537 1 517 0.0 686
Msa0338760 MtrunA17_Chr2g0313811 61.869 535 173 3 16 537 13 529 0.0 671
Msa0338760 MtrunA17_Chr2g0313771 55.283 530 211 6 13 536 14 523 0.0 600
Msa0338760 MtrunA17_Chr8g0354531 53.296 531 223 6 11 536 135 645 0.0 580
Msa0338760 MtrunA17_Chr8g0354511 54.802 531 216 6 11 536 13 524 0.0 580
Msa0338760 MtrunA17_Chr8g0354571 52.731 531 227 6 11 536 13 524 0.0 570
Msa0338760 MtrunA17_Chr4g0014051 50.566 530 239 5 10 536 19 528 0.0 540
Msa0338760 MtrunA17_Chr7g0262111 37.645 518 288 9 25 538 21 507 4.87e-112 342
Msa0338760 MtrunA17_Chr4g0063221 34.444 540 312 8 7 536 12 519 2.25e-110 338
Msa0338760 MtrunA17_Chr1g0154731 35.385 520 301 7 21 536 15 503 1.09e-109 336
Msa0338760 MtrunA17_Chr1g0193811 34.701 536 318 10 10 537 6 517 1.19e-108 334
Msa0338760 MtrunA17_Chr6g0457421 32.580 531 320 8 11 534 6 505 1.63e-98 307
Msa0338760 MtrunA17_Chr7g0215181 32.402 537 321 9 11 538 8 511 3.79e-96 301
Msa0338760 MtrunA17_Chr8g0354561 48.171 328 144 6 11 333 95 401 5.43e-95 295
Msa0338760 MtrunA17_Chr8g0336361 32.042 568 340 10 4 536 2 558 6.45e-90 286
Msa0338760 MtrunA17_Chr4g0004601 30.896 547 338 7 5 536 10 531 1.02e-86 277
Msa0338760 MtrunA17_Chr7g0235261 32.108 517 308 7 31 529 12 503 7.78e-86 275
Msa0338760 MtrunA17_Chr1g0203141 29.297 512 326 7 31 534 30 513 1.54e-84 271
Msa0338760 MtrunA17_Chr3g0128461 30.978 552 335 14 1 535 1 523 8.79e-81 261
Msa0338760 MtrunA17_Chr8g0364081 30.697 531 331 10 26 538 32 543 7.00e-80 260
Msa0338760 MtrunA17_Chr1g0203151 29.273 509 326 7 31 534 30 509 1.61e-79 258
Msa0338760 MtrunA17_Chr6g0479681 29.688 512 337 8 31 534 31 527 1.90e-79 258
Msa0338760 MtrunA17_Chr8g0354541 56.633 196 67 1 341 536 1 178 4.87e-76 238
Msa0338760 MtrunA17_Chr6g0472221 28.305 537 343 9 12 534 16 524 4.10e-74 244
Msa0338760 MtrunA17_Chr8g0362731 32.243 428 258 7 115 537 7 407 3.42e-72 236
Msa0338760 MtrunA17_Chr2g0308651 33.252 409 248 6 137 536 23 415 1.94e-67 224
Msa0338760 MtrunA17_Chr2g0307321 70.968 93 27 0 168 260 1 93 5.17e-43 149
Msa0338760 MtrunA17_Chr2g0307311 54.310 116 53 0 44 159 9 124 8.07e-37 133
Msa0338760 MtrunA17_Chr6g0472171 34.752 141 92 0 394 534 16 156 1.14e-33 125
Msa0338760 MtrunA17_Chr0c19g0493771 27.689 437 256 17 108 522 232 630 1.22e-32 132
Msa0338760 MtrunA17_Chr3g0108651 46.721 122 61 2 421 538 1 122 2.31e-32 120
Msa0338760 MtrunA17_Chr1g0182861 35.211 142 92 0 395 536 22 163 5.98e-32 120
Msa0338760 MtrunA17_Chr5g0396521 28.125 448 240 18 140 535 152 569 7.43e-32 129
Msa0338760 MtrunA17_Chr6g0472161 26.158 367 248 7 20 378 21 372 2.25e-31 125
Msa0338760 MtrunA17_Chr1g0179811 25.974 462 243 16 94 511 108 514 1.48e-30 125
Msa0338760 MtrunA17_Chr5g0403351 26.039 457 283 17 87 522 61 483 7.90e-28 117
Msa0338760 MtrunA17_Chr3g0101731 22.619 504 324 19 63 535 23 491 2.32e-26 112
Msa0338760 MtrunA17_Chr5g0446161 23.043 447 301 13 87 522 66 480 1.92e-25 109
Msa0338760 MtrunA17_Chr5g0403331 22.727 440 294 12 87 509 62 472 2.11e-25 109
Msa0338760 MtrunA17_Chr1g0162811 24.449 454 294 14 87 524 62 482 3.95e-24 105
Msa0338760 MtrunA17_Chr5g0446151 23.266 447 301 13 87 522 66 481 6.74e-24 105
Msa0338760 MtrunA17_Chr3g0116741 23.707 464 309 15 87 536 75 507 7.57e-24 105
Msa0338760 MtrunA17_Chr3g0101711 22.798 386 261 10 146 522 127 484 8.12e-24 104
Msa0338760 MtrunA17_Chr3g0101701 23.592 373 249 9 146 509 128 473 1.53e-23 103
Msa0338760 MtrunA17_Chr3g0101631 22.933 375 242 11 146 509 126 464 1.66e-23 103
Msa0338760 MtrunA17_Chr3g0101691 24.202 376 243 10 146 509 128 473 3.07e-23 103
Msa0338760 MtrunA17_Chr7g0260831 24.742 485 302 19 78 535 53 501 1.69e-22 100
Msa0338760 MtrunA17_Chr3g0101721 22.857 455 303 16 87 524 62 485 3.65e-22 99.8
Msa0338760 MtrunA17_Chr5g0445381 22.472 445 301 15 79 509 85 499 7.17e-22 99.0
Msa0338760 MtrunA17_Chr5g0431671 21.729 451 301 14 75 509 55 469 9.66e-22 98.6
Msa0338760 MtrunA17_Chr5g0403321 22.819 447 286 13 88 509 62 474 1.10e-21 98.6
Msa0338760 MtrunA17_Chr5g0445461 21.445 443 300 15 88 515 65 474 1.18e-21 98.2
Msa0338760 MtrunA17_Chr5g0431641 24.605 443 274 19 88 509 65 468 1.96e-21 97.4
Msa0338760 MtrunA17_Chr1g0182871 26.749 243 171 3 140 382 27 262 1.97e-21 94.0
Msa0338760 MtrunA17_Chr3g0119681 24.222 450 271 12 107 520 84 499 2.40e-21 97.4
Msa0338760 MtrunA17_Chr5g0445421 21.769 441 288 14 79 509 128 521 2.77e-21 97.4
Msa0338760 MtrunA17_Chr4g0076161 23.394 436 293 12 87 509 64 471 3.13e-21 97.1
Msa0338760 MtrunA17_Chr5g0445441 21.951 451 308 15 79 515 95 515 3.60e-21 97.1
Msa0338760 MtrunA17_Chr7g0246221 23.385 449 285 13 87 510 58 472 9.28e-21 95.5
Msa0338760 MtrunA17_Chr8g0351391 24.359 390 247 13 140 510 124 484 9.63e-21 95.5
Msa0338760 MtrunA17_Chr1g0164321 23.581 458 311 14 101 535 105 546 1.48e-20 95.1
Msa0338760 MtrunA17_Chr6g0463801 23.214 448 300 13 87 522 62 477 1.61e-20 94.7
Msa0338760 MtrunA17_Chr3g0101661 22.481 387 260 11 146 522 128 484 1.67e-20 94.7
Msa0338760 MtrunA17_Chr7g0260821 24.689 482 298 18 82 535 58 502 1.90e-20 94.7
Msa0338760 MtrunA17_Chr3g0116681 23.094 446 300 13 80 512 59 474 2.44e-20 94.4
Msa0338760 MtrunA17_Chr3g0101621 23.733 375 237 14 146 509 123 459 2.55e-20 94.0
Msa0338760 MtrunA17_Chr5g0445531 21.379 435 301 13 86 509 63 467 2.90e-20 94.0
Msa0338760 MtrunA17_Chr5g0445451 22.391 460 308 19 79 522 54 480 3.13e-20 94.0
Msa0338760 MtrunA17_Chr6g0463791 24.161 447 293 13 90 522 65 479 4.36e-20 93.6
Msa0338760 MtrunA17_Chr1g0204271 24.413 426 246 17 140 531 118 501 4.95e-20 93.2
Msa0338760 MtrunA17_Chr1g0163281 22.118 425 282 10 132 535 122 518 5.46e-20 93.2
Msa0338760 MtrunA17_Chr8g0377341 23.427 572 326 20 5 538 32 529 5.81e-20 93.2
Msa0338760 MtrunA17_Chr5g0405001 23.607 377 251 9 144 509 131 481 6.66e-20 92.8
Msa0338760 MtrunA17_Chr3g0101581 22.902 441 287 16 87 508 61 467 7.82e-20 92.8
Msa0338760 MtrunA17_Chr3g0101671 21.946 442 295 16 87 509 63 473 9.47e-20 92.4
Msa0338760 MtrunA17_Chr3g0101601 23.810 378 236 14 146 509 126 465 1.09e-19 92.0
Msa0338760 MtrunA17_Chr3g0101571 22.350 434 292 14 87 505 60 463 2.76e-19 90.9
Msa0338760 MtrunA17_Chr8g0351401 26.098 387 254 14 133 506 111 478 3.08e-19 90.9
Msa0338760 MtrunA17_Chr4g0052851 22.664 428 285 14 87 505 58 448 3.97e-19 90.5
Msa0338760 MtrunA17_Chr4g0024771 22.297 444 304 15 90 522 67 480 4.00e-19 90.5
Msa0338760 MtrunA17_Chr8g0351311 22.597 385 261 10 140 510 124 485 4.53e-19 90.5
Msa0338760 MtrunA17_Chr4g0058231 23.111 450 287 14 87 509 52 469 6.97e-19 89.7
Msa0338760 MtrunA17_Chr8g0390881 23.414 457 297 17 87 522 60 484 1.26e-18 89.0
Msa0338760 MtrunA17_Chr5g0443401 22.588 425 277 13 105 525 86 462 1.66e-18 88.6
Msa0338760 MtrunA17_Chr7g0248991 26.446 363 212 15 132 474 40 367 1.74e-18 87.4
Msa0338760 MtrunA17_Chr7g0218611 24.762 315 206 7 201 508 177 467 2.60e-18 87.8
Msa0338760 MtrunA17_Chr4g0067191 23.291 468 301 19 105 535 68 514 2.86e-18 87.8
Msa0338760 MtrunA17_Chr3g0101751 22.395 451 306 16 87 522 67 488 3.13e-18 87.8
Msa0338760 MtrunA17_Chr8g0357431 22.022 445 314 11 87 522 62 482 3.82e-18 87.4
Msa0338760 MtrunA17_Chr4g0058281 22.000 450 302 16 83 512 64 484 5.77e-18 87.0
Msa0338760 MtrunA17_Chr8g0351421 22.833 473 327 17 82 534 56 510 6.78e-18 86.7
Msa0338760 MtrunA17_Chr2g0280261 23.230 452 295 14 87 522 59 474 7.18e-18 86.7
Msa0338760 MtrunA17_Chr6g0449341 20.742 458 309 15 108 535 129 562 9.68e-18 86.7
Msa0338760 MtrunA17_Chr4g0047661 22.697 445 291 14 87 509 72 485 9.84e-18 86.3
Msa0338760 MtrunA17_Chr7g0224561 23.261 460 267 14 89 509 58 470 1.04e-17 86.3
Msa0338760 MtrunA17_Chr4g0047691 21.445 443 293 13 87 509 76 483 1.21e-17 85.9
Msa0338760 MtrunA17_Chr4g0058191 22.654 437 297 11 87 509 49 458 1.41e-17 85.5
Msa0338760 MtrunA17_Chr3g0101821 20.548 438 305 12 87 509 60 469 1.49e-17 85.5
Msa0338760 MtrunA17_Chr8g0334891 23.641 368 225 13 154 509 133 456 1.62e-17 85.5
Msa0338760 MtrunA17_Chr3g0101761 21.729 451 309 14 87 522 60 481 1.68e-17 85.5
Msa0338760 MtrunA17_Chr4g0058201 21.946 442 287 13 90 509 55 460 1.70e-17 85.5
Msa0338760 MtrunA17_Chr8g0361471 21.719 442 296 13 87 509 59 469 2.09e-17 85.1
Msa0338760 MtrunA17_Chr4g0038271 21.429 448 314 14 108 535 130 559 2.17e-17 85.5
Msa0338760 MtrunA17_Chr8g0351441 22.195 410 287 11 140 534 117 509 2.99e-17 84.7
Msa0338760 MtrunA17_Chr5g0430081 22.500 440 296 14 87 509 59 470 3.38e-17 84.7
Msa0338760 MtrunA17_Chr5g0419451 21.875 416 281 13 103 505 100 484 3.89e-17 84.3
Msa0338760 MtrunA17_Chr5g0446101 23.602 322 214 7 204 522 1 293 4.15e-17 82.4
Msa0338760 MtrunA17_Chr4g0035921 21.477 447 301 12 87 509 61 481 4.26e-17 84.3
Msa0338760 MtrunA17_Chr6g0449331 21.311 427 293 13 132 535 108 514 7.49e-17 83.6
Msa0338760 MtrunA17_Chr7g0224551 23.261 460 267 14 89 509 58 470 7.70e-17 83.6
Msa0338760 MtrunA17_Chr5g0443731 23.171 328 204 10 190 509 159 446 8.44e-17 83.2
Msa0338760 MtrunA17_Chr7g0246121 22.529 435 293 10 87 505 58 464 1.13e-16 82.8
Msa0338760 MtrunA17_Chr4g0020041 24.615 325 207 10 208 522 186 482 1.16e-16 82.8
Msa0338760 MtrunA17_Chr7g0265611 24.668 377 247 10 146 510 135 486 1.33e-16 82.8
Msa0338760 MtrunA17_Chr3g0101811 20.299 468 308 19 87 522 62 496 1.38e-16 82.8
Msa0338760 MtrunA17_Chr5g0430031 20.323 433 314 12 87 509 61 472 1.46e-16 82.4
Msa0338760 MtrunA17_Chr6g0465511 20.899 445 296 14 87 509 59 469 1.46e-16 82.4
Msa0338760 MtrunA17_Chr6g0466331 20.899 445 296 14 87 509 59 469 1.81e-16 82.4
Msa0338760 MtrunA17_Chr1g0184421 23.061 477 295 16 82 531 58 489 2.06e-16 82.0
Msa0338760 MtrunA17_Chr6g0449361 22.594 478 300 22 80 521 49 492 2.21e-16 82.0
Msa0338760 MtrunA17_Chr7g0227281 23.333 420 276 14 132 535 104 493 2.65e-16 81.6
Msa0338760 MtrunA17_Chr1g0162801 23.026 456 301 16 87 524 62 485 3.54e-16 81.3
Msa0338760 MtrunA17_Chr3g0101651 21.594 389 262 11 146 522 128 485 3.70e-16 81.3
Msa0338760 MtrunA17_Chr3g0101801 20.796 452 312 16 87 522 67 488 4.17e-16 81.3
Msa0338760 MtrunA17_Chr3g0084921 22.197 446 277 14 94 505 66 475 4.29e-16 81.3
Msa0338760 MtrunA17_Chr4g0047631 21.946 442 292 15 87 509 73 480 4.44e-16 81.3
Msa0338760 MtrunA17_Chr3g0101831 20.968 372 258 10 146 509 127 470 5.80e-16 80.9
Msa0338760 MtrunA17_Chr4g0004481 21.780 427 276 14 132 536 102 492 6.33e-16 80.5
Msa0338760 MtrunA17_Chr3g0113321 24.516 310 196 7 229 535 193 467 6.95e-16 80.5
Msa0338760 MtrunA17_Chr1g0163491 20.930 430 285 9 132 535 120 520 7.36e-16 80.5
Msa0338760 MtrunA17_Chr8g0334941 24.432 352 194 14 178 509 2 301 7.57e-16 79.0
Msa0338760 MtrunA17_Chr4g0046321 21.973 446 290 13 89 509 62 474 1.16e-15 79.7
Msa0338760 MtrunA17_Chr7g0225531 27.431 288 160 11 232 505 228 480 1.30e-15 79.7
Msa0338760 MtrunA17_Chr8g0357421 20.935 449 313 12 87 522 62 481 1.43e-15 79.3
Msa0338760 MtrunA17_Chr5g0431591 21.037 328 220 9 204 522 1 298 1.47e-15 77.8
Msa0338760 MtrunA17_Chr4g0047641 22.538 457 284 16 83 509 68 484 1.58e-15 79.3
Msa0338760 MtrunA17_Chr8g0380471 23.171 410 256 13 135 534 114 474 1.74e-15 79.0
Msa0338760 MtrunA17_Chr5g0431511 22.894 463 294 16 81 509 37 470 1.79e-15 79.3
Msa0338760 MtrunA17_Chr4g0017411 22.426 437 275 14 87 505 55 445 2.71e-15 78.6
Msa0338760 MtrunA17_Chr2g0280121 24.138 377 242 10 146 505 127 476 3.34e-15 78.2
Msa0338760 MtrunA17_Chr5g0430071 24.058 345 219 9 204 532 36 353 3.54e-15 77.4
Msa0338760 MtrunA17_Chr5g0403931 26.168 321 183 10 211 510 168 455 3.66e-15 78.2
Msa0338760 MtrunA17_Chr6g0463621 27.619 210 127 6 326 531 2 190 4.21e-15 74.3
Msa0338760 MtrunA17_Chr8g0339331 23.596 445 279 16 94 509 72 484 4.44e-15 77.8
Msa0338760 MtrunA17_Chr2g0321171 25.385 260 158 9 248 505 241 466 5.06e-15 77.8
Msa0338760 MtrunA17_Chr6g0484841 21.111 450 306 11 87 518 61 479 5.77e-15 77.4
Msa0338760 MtrunA17_Chr5g0430131 23.301 309 214 6 204 509 183 471 5.98e-15 77.4
Msa0338760 MtrunA17_Chr1g0167321 21.903 452 311 13 87 524 59 482 5.98e-15 77.4
Msa0338760 MtrunA17_Chr4g0011981 23.636 440 290 14 87 509 54 464 6.02e-15 77.4
Msa0338760 MtrunA17_Chr1g0151221 23.517 472 273 17 90 510 66 500 7.17e-15 77.4
Msa0338760 MtrunA17_Chr8g0381541 25.287 261 165 8 251 508 229 462 7.66e-15 77.0
Msa0338760 MtrunA17_Chr7g0218601 23.676 321 202 9 201 509 178 467 8.35e-15 77.0
Msa0338760 MtrunA17_Chr1g0163351 22.883 437 268 16 132 535 104 504 8.74e-15 77.0
Msa0338760 MtrunA17_Chr8g0390871 27.513 189 116 3 331 518 33 201 9.27e-15 73.9
Msa0338760 MtrunA17_Chr8g0339311 23.348 454 285 15 85 505 65 488 9.53e-15 77.0
Msa0338760 MtrunA17_Chr4g0046351 21.622 444 284 12 94 509 67 474 9.94e-15 77.0
Msa0338760 MtrunA17_Chr1g0174471 22.616 451 278 14 88 505 75 487 1.00e-14 77.0
Msa0338760 MtrunA17_Chr8g0372251 22.727 352 240 11 144 486 122 450 1.15e-14 76.6
Msa0338760 MtrunA17_Chr3g0101741 20.888 383 263 10 146 522 55 403 1.32e-14 75.9
Msa0338760 MtrunA17_Chr1g0174441 21.581 468 283 16 79 505 69 493 1.37e-14 76.6
Msa0338760 MtrunA17_Chr8g0381571 25.194 258 163 8 251 505 229 459 1.87e-14 75.9
Msa0338760 MtrunA17_Chr6g0451741 23.965 459 283 17 90 512 89 517 3.46e-14 75.1
Msa0338760 MtrunA17_Chr1g0178971 24.679 389 246 16 136 509 125 481 3.60e-14 75.1
Msa0338760 MtrunA17_Chr8g0387101 25.000 388 231 15 146 509 125 476 3.82e-14 75.1
Msa0338760 MtrunA17_Chr3g0107501 21.254 287 196 7 224 505 186 447 3.87e-14 74.7
Msa0338760 MtrunA17_Chr4g0052861 22.323 439 284 15 87 505 56 457 4.00e-14 74.7
Msa0338760 MtrunA17_Chr1g0156101 21.888 498 308 19 81 530 36 500 4.93e-14 74.7
Msa0338760 MtrunA17_Chr2g0334021 29.508 183 105 5 331 509 308 470 5.81e-14 74.3
Msa0338760 MtrunA17_Chr4g0046331 21.670 443 287 12 94 509 67 476 6.68e-14 74.3
Msa0338760 MtrunA17_Chr1g0163451 26.484 219 130 6 327 535 326 523 7.28e-14 74.3
Msa0338760 MtrunA17_Chr6g0466941 22.098 448 282 16 94 505 67 483 7.72e-14 73.9
Msa0338760 MtrunA17_Chr3g0135841 22.013 477 279 16 90 510 69 508 8.65e-14 73.9
Msa0338760 MtrunA17_Chr5g0403451 25.188 266 166 9 287 535 29 278 9.07e-14 72.0
Msa0338760 MtrunA17_Chr1g0174451 23.043 447 267 16 94 505 68 472 1.08e-13 73.6
Msa0338760 MtrunA17_Chr1g0163371 23.853 218 141 5 325 535 22 221 1.09e-13 70.5
Msa0338760 MtrunA17_Chr7g0227291 22.143 420 281 14 132 535 104 493 1.37e-13 73.2
Msa0338760 MtrunA17_Chr1g0183611 22.115 416 262 15 132 517 23 406 1.43e-13 72.8
Msa0338760 MtrunA17_Chr8g0369791 21.546 427 269 11 85 493 45 423 1.59e-13 72.8
Msa0338760 MtrunA17_Chr7g0235551 24.773 331 200 12 205 515 181 482 1.63e-13 73.2
Msa0338760 MtrunA17_Chr5g0400411 24.123 456 281 15 64 508 61 462 1.65e-13 72.8
Msa0338760 MtrunA17_Chr5g0395321 22.248 436 290 16 87 509 66 465 1.68e-13 73.2
Msa0338760 MtrunA17_Chr8g0344151 21.525 446 294 14 87 509 60 472 1.71e-13 72.8
Msa0338760 MtrunA17_Chr6g0449351 22.330 412 273 16 131 521 67 452 1.79e-13 72.8
Msa0338760 MtrunA17_Chr3g0101611 21.445 443 291 13 87 508 62 468 1.94e-13 72.8
Msa0338760 MtrunA17_Chr2g0280081 28.713 202 116 6 313 505 789 971 1.95e-13 73.6
Msa0338760 MtrunA17_Chr2g0280081 24.011 354 236 12 166 505 136 470 2.15e-13 73.2
Msa0338760 MtrunA17_Chr1g0184461 21.206 481 299 16 82 531 58 489 2.16e-13 72.8
Msa0338760 MtrunA17_Chr2g0293421 20.588 408 270 13 105 505 94 454 2.50e-13 72.4
Msa0338760 MtrunA17_Chr8g0364651 27.317 205 117 5 316 510 287 469 2.82e-13 72.4
Msa0338760 MtrunA17_Chr1g0163421 23.970 267 170 7 277 535 298 539 7.25e-13 71.2
Msa0338760 MtrunA17_Chr8g0348751 26.066 211 144 5 325 531 303 505 7.48e-13 70.9
Msa0338760 MtrunA17_Chr4g0011901 22.018 436 300 13 88 509 55 464 7.85e-13 70.9
Msa0338760 MtrunA17_Chr6g0484811 21.670 443 297 14 87 509 61 473 9.19e-13 70.5
Msa0338760 MtrunA17_Chr5g0431501 22.487 378 247 13 147 509 124 470 9.99e-13 70.5
Msa0338760 MtrunA17_Chr5g0431461 22.487 378 247 13 147 509 124 470 9.99e-13 70.5
Msa0338760 MtrunA17_Chr1g0163461 25.926 216 135 5 327 535 321 518 1.14e-12 70.5
Msa0338760 MtrunA17_Chr2g0293411 22.759 435 281 17 86 508 69 460 1.19e-12 70.1
Msa0338760 MtrunA17_Chr1g0174481 21.598 338 216 10 190 510 166 471 1.29e-12 70.1
Msa0338760 MtrunA17_Chr8g0372711 25.517 290 168 12 243 531 229 471 1.29e-12 70.1
Msa0338760 MtrunA17_Chr2g0310381 22.222 450 283 17 87 509 52 461 1.31e-12 70.1
Msa0338760 MtrunA17_Chr5g0430101 21.719 442 295 17 87 509 60 469 1.34e-12 70.1
Msa0338760 MtrunA17_Chr5g0430091 22.654 309 217 5 204 509 183 472 1.61e-12 69.7
Msa0338760 MtrunA17_Chr1g0153371 21.973 446 282 14 85 509 43 443 1.70e-12 69.7
Msa0338760 MtrunA17_Chr5g0401681 20.628 446 281 16 88 505 57 457 1.82e-12 69.7
Msa0338760 MtrunA17_Chr1g0198191 22.566 452 289 18 86 511 71 487 2.01e-12 69.7
Msa0338760 MtrunA17_Chr6g0451781 24.204 314 193 11 208 505 238 522 2.08e-12 69.7
Msa0338760 MtrunA17_Chr6g0466901 22.959 392 248 15 146 512 125 487 2.48e-12 69.3
Msa0338760 MtrunA17_Chr3g0086691 21.094 384 253 13 146 509 121 474 2.61e-12 69.3
Msa0338760 MtrunA17_Chr2g0280011 28.365 208 120 7 318 516 1 188 2.73e-12 66.2
Msa0338760 MtrunA17_Chr5g0401691 21.867 375 238 11 146 505 140 474 2.87e-12 68.9
Msa0338760 MtrunA17_Chr1g0163211 21.546 427 269 13 132 531 109 496 3.00e-12 68.9
Msa0338760 MtrunA17_Chr7g0258211 21.471 340 215 10 187 505 168 476 3.01e-12 68.9
Msa0338760 MtrunA17_Chr4g0011871 21.826 449 296 14 84 509 49 465 3.27e-12 68.9
Msa0338760 MtrunA17_Chr1g0200961 22.427 379 253 9 144 509 115 465 5.90e-12 68.2
Msa0338760 MtrunA17_Chr5g0419691 23.734 316 210 8 201 509 173 464 6.48e-12 67.8
Msa0338760 MtrunA17_Chr8g0387001 23.529 272 185 6 263 531 249 500 8.05e-12 67.8
Msa0338760 MtrunA17_Chr6g0451691 24.047 341 206 12 194 512 190 499 8.62e-12 67.8
Msa0338760 MtrunA17_Chr1g0160861 23.220 323 204 11 197 509 18 306 9.56e-12 66.6
Msa0338760 MtrunA17_Chr4g0008101 22.727 396 247 14 146 512 130 495 9.60e-12 67.4
Msa0338760 MtrunA17_Chr5g0413911 27.363 201 128 5 308 505 310 495 1.32e-11 67.0
Msa0338760 MtrunA17_Chr8g0344181 21.300 446 295 15 87 509 62 474 1.46e-11 67.0
Msa0338760 MtrunA17_Chr4g0046681 27.513 189 110 6 323 505 29 196 1.57e-11 64.7
Msa0338760 MtrunA17_Chr1g0174431 25.773 194 113 6 326 509 2 174 1.73e-11 63.9
Msa0338760 MtrunA17_Chr1g0197871 23.048 269 175 9 245 509 223 463 1.99e-11 66.2
Msa0338760 MtrunA17_Chr6g0451751 24.419 344 209 13 195 520 189 499 2.05e-11 66.6
Msa0338760 MtrunA17_Chr5g0400421 25.389 193 126 3 316 508 289 463 2.36e-11 66.2
Msa0338760 MtrunA17_Chr7g0258221 20.905 464 320 13 66 505 30 470 2.46e-11 66.2
Msa0338760 MtrunA17_Chr3g0078411 24.265 272 173 7 238 508 199 438 2.57e-11 65.9
Msa0338760 MtrunA17_Chr1g0210091 22.440 459 295 17 73 505 79 502 2.79e-11 65.9
Msa0338760 MtrunA17_Chr1g0160851 21.935 310 198 9 207 509 193 465 3.10e-11 65.9
Msa0338760 MtrunA17_Chr3g0104351 23.132 281 190 8 262 533 250 513 3.87e-11 65.5
Msa0338760 MtrunA17_Chr4g0044851 21.445 443 287 11 85 509 45 444 4.00e-11 65.5
Msa0338760 MtrunA17_Chr1g0197891 23.106 264 172 7 249 509 228 463 4.02e-11 65.5
Msa0338760 MtrunA17_Chr1g0163501 21.729 428 279 13 132 535 103 498 4.31e-11 65.5
Msa0338760 MtrunA17_Chr1g0156081 20.851 470 316 16 89 530 83 524 4.41e-11 65.5
Msa0338760 MtrunA17_Chr5g0408181 21.591 440 271 12 85 504 43 428 4.60e-11 65.1
Msa0338760 MtrunA17_Chr5g0430041 29.457 129 89 2 394 521 27 154 4.90e-11 62.0
Msa0338760 MtrunA17_Chr1g0197881 23.106 264 172 7 249 509 227 462 5.05e-11 65.1
Msa0338760 MtrunA17_Chr1g0197851 23.106 264 172 7 249 509 228 463 5.05e-11 65.1
Msa0338760 MtrunA17_Chr8g0382901 23.009 452 284 19 87 522 52 455 6.70e-11 65.1
Msa0338760 MtrunA17_Chr1g0171041 22.549 306 186 7 228 526 236 497 7.92e-11 64.7
Msa0338760 MtrunA17_Chr7g0255131 22.611 429 282 14 99 505 76 476 7.99e-11 64.7
Msa0338760 MtrunA17_Chr4g0046631 22.727 440 286 17 90 505 75 484 9.48e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0338760 AT3G14690.1 48.881 536 246 6 5 536 1 512 0.0 550
Msa0338760 AT3G14690.2 48.881 536 246 6 5 536 36 547 0.0 550
Msa0338760 AT3G14610.1 49.807 518 233 6 22 536 19 512 0.0 539
Msa0338760 AT3G14630.2 48.204 529 244 5 14 536 59 563 0.0 530
Msa0338760 AT3G14630.1 48.204 529 244 5 14 536 4 508 0.0 528
Msa0338760 AT3G14660.1 48.638 514 238 4 25 536 23 512 0.0 528
Msa0338760 AT3G14680.1 49.222 514 235 4 25 536 23 512 0.0 528
Msa0338760 AT3G14640.1 49.421 518 230 6 25 536 23 514 0.0 523
Msa0338760 AT3G14640.2 49.421 518 230 6 25 536 45 536 0.0 523
Msa0338760 AT3G14650.1 48.249 514 240 4 25 536 23 512 0.0 521
Msa0338760 AT3G14620.1 49.903 517 228 7 22 534 24 513 1.06e-180 518
Msa0338760 AT3G14660.2 50.541 370 158 3 168 536 21 366 1.59e-133 392
Msa0338760 AT2G26710.1 35.888 535 302 6 11 536 13 515 1.12e-127 383
Msa0338760 AT3G14660.3 48.739 357 175 3 25 379 23 373 4.08e-123 367
Msa0338760 AT2G46960.2 36.047 516 291 11 30 534 28 515 8.50e-106 327
Msa0338760 AT2G46950.1 35.838 519 296 10 25 536 82 570 1.95e-104 325
Msa0338760 AT4G27710.1 33.769 536 316 8 11 534 7 515 1.12e-99 311
Msa0338760 AT1G75130.1 33.204 515 306 8 30 538 23 505 4.20e-98 306
Msa0338760 AT5G38450.1 34.515 536 307 13 11 534 11 514 5.52e-92 291
Msa0338760 AT2G46960.1 36.715 414 228 8 128 534 13 399 5.16e-86 272
Msa0338760 AT1G67110.1 32.657 542 323 12 1 534 1 508 4.37e-85 273
Msa0338760 AT5G24910.1 31.171 555 335 12 1 537 6 531 3.40e-78 255
Msa0338760 AT5G52400.1 29.182 538 330 13 12 534 16 517 3.52e-78 255
Msa0338760 AT5G24900.1 31.467 518 309 10 36 536 37 525 6.04e-77 252
Msa0338760 AT1G17060.1 38.182 275 169 1 16 289 16 290 4.33e-72 233
Msa0338760 AT5G24900.2 33.985 409 236 7 136 536 26 408 4.92e-70 230
Msa0338760 AT2G46950.2 35.083 362 216 9 25 379 82 431 1.76e-61 209
Msa0338760 AT4G27710.2 32.500 360 223 6 11 359 7 357 3.22e-54 187
Msa0338760 AT5G38450.2 32.895 380 232 10 11 378 11 379 5.73e-49 174
Msa0338760 AT1G67110.2 30.829 386 246 9 1 378 1 373 8.02e-42 154
Msa0338760 AT5G24910.2 27.525 396 260 10 1 378 6 392 3.42e-34 134
Msa0338760 AT1G31800.1 26.291 426 257 15 108 511 153 543 7.73e-31 127
Msa0338760 AT3G53130.1 25.745 470 274 17 94 531 108 534 1.61e-30 125
Msa0338760 AT4G15110.1 25.708 424 235 13 140 512 159 553 1.03e-26 114
Msa0338760 AT3G48300.1 24.480 433 272 14 90 505 56 450 2.11e-26 112
Msa0338760 AT3G48300.2 24.480 433 272 14 90 505 58 452 2.15e-26 112
Msa0338760 AT4G13310.1 24.733 469 264 16 94 530 63 474 1.02e-25 110
Msa0338760 AT4G13290.1 24.283 453 278 14 94 530 64 467 2.41e-24 106
Msa0338760 AT3G48310.1 22.069 435 288 11 94 513 63 461 4.84e-24 105
Msa0338760 AT3G26125.1 22.340 470 322 16 90 531 73 527 5.86e-23 102
Msa0338760 AT3G48270.1 23.131 428 286 11 94 510 62 457 2.88e-22 100
Msa0338760 AT1G24540.1 22.440 459 310 14 100 534 82 518 1.95e-21 98.2
Msa0338760 AT5G23190.1 24.078 461 296 17 101 533 103 537 2.19e-21 98.2
Msa0338760 AT1G11680.1 26.133 375 207 13 154 509 135 458 1.28e-20 95.5
Msa0338760 AT3G48280.1 22.936 436 286 11 89 509 56 456 1.37e-20 95.5
Msa0338760 AT5G24950.1 22.936 436 288 13 87 505 56 460 1.42e-20 95.5
Msa0338760 AT2G21910.1 23.790 496 302 21 79 535 47 505 2.39e-20 94.7
Msa0338760 AT2G45510.1 22.883 437 296 16 114 532 91 504 8.58e-20 93.2
Msa0338760 AT1G13080.1 23.810 378 246 14 146 510 120 468 2.55e-19 91.7
Msa0338760 AT3G48290.1 22.706 436 286 11 89 509 59 458 3.65e-19 90.9
Msa0338760 AT4G31500.1 24.074 378 229 14 149 505 122 462 3.88e-19 90.9
Msa0338760 AT1G13080.2 23.853 327 212 10 195 510 50 350 4.15e-19 89.7
Msa0338760 AT2G44890.1 22.983 409 276 15 140 531 117 503 4.15e-19 90.9
Msa0338760 AT3G26230.1 22.492 329 217 8 195 509 163 467 6.91e-19 90.1
Msa0338760 AT2G30770.1 24.711 433 269 13 94 505 64 460 6.94e-19 90.1
Msa0338760 AT1G57750.1 25.205 488 292 20 80 535 49 495 7.33e-19 90.1
Msa0338760 AT5G04330.1 22.973 444 294 13 87 509 56 472 1.16e-18 89.7
Msa0338760 AT3G26280.1 23.670 376 242 11 146 505 121 467 1.91e-18 89.0
Msa0338760 AT3G26160.1 21.629 356 236 11 146 486 119 446 2.29e-18 88.6
Msa0338760 AT3G26280.2 23.936 376 241 11 146 505 138 484 2.44e-18 88.6
Msa0338760 AT3G48320.1 21.963 428 289 11 94 509 63 457 6.14e-18 87.0
Msa0338760 AT4G39500.1 22.312 493 312 18 79 535 8 465 1.71e-17 85.5
Msa0338760 AT4G39500.2 22.312 493 312 18 79 535 58 515 1.75e-17 85.9
Msa0338760 AT1G69500.1 23.451 452 284 19 105 513 68 500 2.74e-17 85.5
Msa0338760 AT1G13140.2 21.205 448 302 12 100 533 85 495 2.77e-17 85.1
Msa0338760 AT3G48290.2 22.737 453 289 12 90 509 60 484 3.31e-17 85.1
Msa0338760 AT5G44620.1 23.165 436 269 16 79 486 62 459 4.48e-17 84.7
Msa0338760 AT5G09970.1 22.066 426 274 14 103 505 112 502 6.37e-17 84.3
Msa0338760 AT3G25180.1 22.749 422 268 12 108 505 86 473 6.47e-17 84.0
Msa0338760 AT1G13150.1 21.395 430 292 13 129 533 106 514 7.26e-17 84.0
Msa0338760 AT1G13140.1 19.298 456 327 13 100 533 85 521 8.19e-17 84.0
Msa0338760 AT4G13770.1 21.179 458 308 13 81 509 34 467 9.00e-17 83.6
Msa0338760 AT4G39510.1 26.962 293 177 10 255 535 237 504 1.14e-16 83.2
Msa0338760 AT3G26830.1 21.101 436 299 14 88 505 53 461 1.51e-16 82.8
Msa0338760 AT3G26270.1 23.333 330 210 11 195 509 169 470 1.58e-16 82.8
Msa0338760 AT1G13090.2 20.635 441 295 16 88 505 53 461 2.08e-16 82.4
Msa0338760 AT5G08250.1 21.041 461 313 13 101 535 42 477 2.40e-16 82.4
Msa0338760 AT2G44890.2 22.222 405 266 14 140 531 117 485 2.75e-16 82.0
Msa0338760 AT5G35715.1 23.195 457 293 20 103 536 6 427 3.58e-16 81.3
Msa0338760 AT5G08250.2 21.109 469 303 13 101 535 104 539 4.38e-16 81.6
Msa0338760 AT3G26170.1 19.556 450 313 13 87 515 54 475 4.87e-16 81.3
Msa0338760 AT2G23180.1 23.353 334 216 9 214 535 206 511 4.99e-16 81.3
Msa0338760 AT3G26210.1 22.167 406 267 15 146 536 120 491 6.44e-16 80.9
Msa0338760 AT4G36220.1 22.572 381 256 10 144 509 127 483 1.11e-15 80.1
Msa0338760 AT2G42250.1 24.444 405 257 12 120 505 103 477 1.30e-15 80.1
Msa0338760 AT4G37430.1 23.632 457 276 20 85 508 46 462 1.40e-15 79.7
Msa0338760 AT2G42850.1 24.000 375 230 13 141 509 132 457 1.46e-15 79.7
Msa0338760 AT1G13100.1 20.737 434 294 13 94 505 56 461 1.58e-15 79.7
Msa0338760 AT4G37340.1 25.526 380 223 14 146 508 122 458 2.36e-15 79.3
Msa0338760 AT4G32170.1 22.391 460 289 20 108 535 79 502 2.65e-15 79.0
Msa0338760 AT5G02900.1 25.000 292 175 12 232 505 182 447 3.64e-15 78.6
Msa0338760 AT2G26170.1 23.593 462 272 17 90 510 72 493 3.99e-15 78.6
Msa0338760 AT2G26170.2 23.608 449 262 17 103 510 2 410 5.03e-15 77.8
Msa0338760 AT5G63450.1 23.441 401 241 13 145 520 125 484 5.69e-15 78.2
Msa0338760 AT2G27690.1 22.624 442 284 18 108 524 76 484 5.74e-15 77.8
Msa0338760 AT5G24960.1 21.719 442 304 12 87 514 57 470 5.93e-15 77.8
Msa0338760 AT5G63450.2 23.441 401 241 13 145 520 183 542 7.44e-15 77.8
Msa0338760 AT1G74110.1 22.955 440 261 18 103 505 107 505 1.55e-14 76.6
Msa0338760 AT1G11610.1 21.670 443 282 15 94 511 64 466 1.73e-14 76.6
Msa0338760 AT1G11610.2 21.670 443 282 15 94 511 64 466 1.89e-14 76.3
Msa0338760 AT4G37330.1 24.938 405 232 17 127 508 100 455 1.98e-14 76.3
Msa0338760 AT2G24180.1 22.831 438 289 18 87 505 60 467 1.99e-14 76.3
Msa0338760 AT3G56630.1 24.586 423 255 20 129 523 97 483 2.50e-14 75.9
Msa0338760 AT5G67310.1 23.848 369 243 12 146 508 133 469 2.53e-14 75.9
Msa0338760 AT1G34540.1 24.311 399 240 18 136 509 109 470 3.78e-14 75.5
Msa0338760 AT3G26220.1 21.212 330 216 10 195 508 166 467 3.98e-14 75.5
Msa0338760 AT3G26310.1 20.366 437 304 14 89 509 56 464 4.53e-14 75.1
Msa0338760 AT5G25140.1 22.717 449 277 16 89 509 55 461 5.12e-14 75.1
Msa0338760 AT5G45340.1 20.179 446 274 13 85 505 44 432 5.22e-14 74.7
Msa0338760 AT5G45340.2 20.179 446 274 13 85 505 44 432 5.31e-14 74.7
Msa0338760 AT2G30750.1 23.567 314 198 8 203 505 178 460 5.86e-14 74.7
Msa0338760 AT2G40890.1 20.889 450 302 10 78 505 42 459 6.03e-14 74.7
Msa0338760 AT5G36220.1 23.483 379 231 14 146 508 129 464 9.99e-14 73.9
Msa0338760 AT2G46660.1 22.931 423 266 18 103 505 113 495 1.14e-13 73.9
Msa0338760 AT5G42590.1 22.222 342 205 10 201 520 175 477 1.52e-13 73.6
Msa0338760 AT3G10570.1 22.737 453 286 18 86 511 69 484 1.90e-13 73.2
Msa0338760 AT4G37410.1 22.819 447 288 18 79 505 47 456 2.16e-13 73.2
Msa0338760 AT2G25160.1 25.705 319 196 9 182 484 165 458 2.24e-13 73.2
Msa0338760 AT1G64940.1 26.562 192 122 4 316 505 301 475 2.53e-13 72.8
Msa0338760 AT2G45970.1 28.272 191 108 5 325 502 302 476 3.52e-13 72.4
Msa0338760 AT4G20240.1 22.680 388 256 11 86 459 56 413 4.80e-13 71.6
Msa0338760 AT3G26300.1 20.912 373 253 12 149 509 123 465 7.28e-13 71.2
Msa0338760 AT4G13310.2 24.397 373 205 15 94 434 63 390 7.66e-13 70.9
Msa0338760 AT4G00360.1 21.247 433 272 14 136 535 114 510 9.19e-13 71.2
Msa0338760 AT1G66540.1 23.499 383 227 12 147 508 8 345 1.02e-12 70.5
Msa0338760 AT3G20120.2 23.476 328 202 10 195 505 43 338 1.23e-12 70.1
Msa0338760 AT3G20120.3 23.476 328 202 10 195 505 43 338 1.23e-12 70.1
Msa0338760 AT3G20120.1 23.476 328 202 10 195 505 43 338 1.23e-12 70.1
Msa0338760 AT1G01600.1 21.016 433 275 14 136 535 114 512 1.56e-12 70.5
Msa0338760 AT1G50520.1 21.693 378 244 11 146 505 135 478 1.59e-12 70.5
Msa0338760 AT3G20120.4 23.765 324 206 10 195 505 179 474 1.70e-12 70.1
Msa0338760 AT3G20950.1 23.724 333 195 12 195 505 184 479 2.04e-12 70.1
Msa0338760 AT1G13110.1 19.786 374 259 11 146 505 121 467 3.03e-12 69.3
Msa0338760 AT5G25180.1 23.094 446 279 17 89 509 55 461 3.27e-12 69.3
Msa0338760 AT4G37370.1 23.873 377 232 13 146 508 122 457 3.34e-12 69.3
Msa0338760 AT4G39490.1 27.461 193 114 6 325 505 307 485 3.50e-12 69.3
Msa0338760 AT4G15350.1 22.656 384 234 14 146 505 125 469 3.62e-12 69.3
Msa0338760 AT5G47990.1 21.341 328 209 10 195 505 180 475 5.35e-12 68.6
Msa0338760 AT3G03470.1 22.911 371 255 11 146 505 125 475 8.58e-12 68.2
Msa0338760 AT4G15393.2 24.125 257 166 5 247 503 212 439 8.68e-12 67.8
Msa0338760 AT1G66540.2 23.839 323 190 10 201 508 5 286 8.90e-12 67.0
Msa0338760 AT5G36220.2 23.006 326 200 11 195 508 32 318 1.27e-11 66.6
Msa0338760 AT1G63710.1 23.308 266 175 4 265 523 251 494 1.28e-11 67.4
Msa0338760 AT1G47620.1 21.930 456 299 16 108 535 88 514 1.42e-11 67.4
Msa0338760 AT2G45580.2 26.122 245 153 5 265 509 106 322 1.52e-11 66.6
Msa0338760 AT2G45580.1 26.122 245 153 5 265 509 260 476 2.06e-11 67.0
Msa0338760 AT4G15360.1 19.467 375 255 9 146 505 130 472 2.07e-11 67.0
Msa0338760 AT1G64930.1 25.773 194 123 5 316 505 299 475 2.27e-11 66.6
Msa0338760 AT3G20140.1 22.086 326 205 10 195 505 180 471 3.00e-11 66.2
Msa0338760 AT3G20935.1 21.875 288 172 6 245 505 40 301 3.13e-11 65.5
Msa0338760 AT5G04660.1 20.925 454 294 17 86 511 67 483 3.85e-11 65.9
Msa0338760 AT5G05690.3 24.573 293 185 6 229 521 76 332 3.97e-11 65.1
Msa0338760 AT5G36110.1 21.867 375 249 11 135 508 117 448 4.78e-11 65.5
Msa0338760 AT3G61880.1 21.149 435 290 15 103 519 109 508 4.94e-11 65.9
Msa0338760 AT5G57220.1 21.087 460 281 18 79 508 46 453 5.06e-11 65.5
Msa0338760 AT3G61880.2 21.149 435 290 15 103 519 109 508 5.53e-11 65.5
Msa0338760 AT4G15396.3 27.586 203 131 5 313 514 265 452 8.02e-11 64.7
Msa0338760 AT3G19270.2 19.731 446 290 12 85 509 42 440 8.06e-11 64.7
Msa0338760 AT5G05690.1 24.727 275 171 6 229 503 195 433 8.58e-11 64.7
Msa0338760 AT1G64950.1 26.042 192 123 4 316 505 300 474 9.88e-11 64.7
Msa0338760 AT5G04630.1 26.829 205 122 7 314 511 297 480 9.94e-11 64.7

Find 141 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTATTCTTTACTTAATT+TGG 0.084119 2_4:-59294104 Msa0338760:five_prime_UTR
TGAAATCTTTAATCCCTTTA+TGG 0.123242 2_4:-59292944 Msa0338760:CDS
AGTAAAGAATAGAGAATTTA+TGG 0.135364 2_4:+59294112 None:intergenic
TGAATAATTAAATTTAAATT+TGG 0.150818 2_4:+59291368 None:intergenic
TGAATAGTCATTACTAAATT+TGG 0.170025 2_4:+59291746 None:intergenic
AGCCATGGCTTTATAGAATT+TGG 0.170075 2_4:+59294192 None:intergenic
AATTTGAAAATCTCATATTT+TGG 0.203025 2_4:+59293465 None:intergenic
TTCCATGATCTCTAATTTCT+TGG 0.206424 2_4:+59292675 None:intergenic
ACAATAATATGCGTTGTTAA+AGG 0.213081 2_4:-59291317 Msa0338760:three_prime_UTR
GAGGAAGTATTACAAATATT+TGG 0.226131 2_4:-59292506 Msa0338760:CDS
TTATGTTGAAGCAAAATAAT+TGG 0.233112 2_4:+59291986 None:intergenic
CAACAACTTGTTCAAATTTA+CGG 0.247474 2_4:-59293764 Msa0338760:intron
CAGGTCCATGGGTTTGGATT+TGG 0.260034 2_4:+59293823 None:intergenic
GTTGGCAAAGATATAAAGTT+TGG 0.266128 2_4:-59292046 Msa0338760:CDS
CCATCATTGGCTATAAATTA+TGG 0.266604 2_4:-59294019 Msa0338760:CDS
CTACTTCAACTATGCTTGTT+TGG 0.272405 2_4:-59292577 Msa0338760:CDS
AAATCTACCATTTGTTGCTT+TGG 0.272507 2_4:+59291901 None:intergenic
TAGTGGTTGGCTTGAGATCT+TGG 0.285759 2_4:-59292358 Msa0338760:CDS
ATGAAGTGCGTGACACTTAA+TGG 0.290423 2_4:-59291432 Msa0338760:three_prime_UTR
TCATGGAAACAACAAGAATA+TGG 0.293660 2_4:-59292660 Msa0338760:CDS
AAGAGCTTCTCTAGCCTCTT+TGG 0.295504 2_4:+59293926 None:intergenic
CTTGCACGTTCTTGCCAATC+AGG 0.309729 2_4:+59292530 None:intergenic
ATCCGACAGGTCCATGGGTT+TGG 0.318750 2_4:+59293817 None:intergenic
TTCAACATAACAATGAACTA+TGG 0.332986 2_4:-59291973 Msa0338760:CDS
GGTTCCATTTCTCTGCTTGT+AGG 0.343300 2_4:+59294040 None:intergenic
AAATTTGGATAACATATAGA+TGG 0.345980 2_4:+59291383 None:intergenic
ACACATGGAGAGTGCTGAAT+TGG 0.369725 2_4:-59293961 Msa0338760:CDS
CAGGGAAGAATCCTTTCATT+TGG 0.370208 2_4:-59293569 Msa0338760:CDS
GTTATTTCTCGAAACGCATT+TGG 0.377764 2_4:-59293041 Msa0338760:CDS
ATCACCTACAAGCAGAGAAA+TGG 0.379501 2_4:-59294044 Msa0338760:exon
AAGAATCCTTTCATTTGGTC+TGG 0.379513 2_4:-59293564 Msa0338760:CDS
TGAACAAGTTGTTGAATGTA+TGG 0.379843 2_4:+59293773 None:intergenic
GCCACTGAGAATGACTTATT+AGG 0.381371 2_4:-59292719 Msa0338760:CDS
GATTAGTCTTACCTCCATAA+AGG 0.389113 2_4:+59292930 None:intergenic
TTATTTAATCCTTCATAGTC+TGG 0.392592 2_4:+59292473 None:intergenic
CATCACTGTAACACTTGGTT+TGG 0.392948 2_4:-59293987 Msa0338760:CDS
GGAGAGTGCTGAATTGGATT+TGG 0.400703 2_4:-59293955 Msa0338760:CDS
ATTCTTATAGACTTGTGCTT+GGG 0.400709 2_4:-59293880 Msa0338760:CDS
ACTTGTGCTTGGGGACTTGA+AGG 0.409785 2_4:-59293870 Msa0338760:CDS
CATGATCTCTAATTTCTTGG+TGG 0.411298 2_4:+59292678 None:intergenic
TGCAAGTTATTCTACTTGGC+AGG 0.413849 2_4:-59292608 Msa0338760:CDS
ATTAGTCTTACCTCCATAAA+GGG 0.413978 2_4:+59292931 None:intergenic
CACCAAGAAATTAGAGATCA+TGG 0.420317 2_4:-59292677 Msa0338760:CDS
AAAAGTGGAGAAAGCATAGA+AGG 0.422271 2_4:-59293410 Msa0338760:CDS
CAGAGAAATGGAACCATCAT+TGG 0.422476 2_4:-59294032 Msa0338760:exon
GCACTGATATGATTAGCAAA+TGG 0.429712 2_4:-59293136 Msa0338760:CDS
AGATTGTATCCACCTGCATT+TGG 0.432958 2_4:-59292082 Msa0338760:CDS
CTTGAAGGATTCATATAAGA+TGG 0.437098 2_4:-59293855 Msa0338760:CDS
TTCACTATTGGAAGCAAAGA+TGG 0.441429 2_4:-59291828 Msa0338760:CDS
TTTGCACATCTCAAGGTCTC+AGG 0.447199 2_4:-59292333 Msa0338760:intron
TAGAACCTCGTACAAAATCA+TGG 0.457849 2_4:+59292105 None:intergenic
TCAACATAACAATGAACTAT+GGG 0.459154 2_4:-59291972 Msa0338760:CDS
CACTGATATGATTAGCAAAT+GGG 0.461038 2_4:-59293135 Msa0338760:CDS
AATGACTATTCAGCCAGAAA+AGG 0.465992 2_4:-59291735 Msa0338760:CDS
CATGGAAACAACAAGAATAT+GGG 0.467549 2_4:-59292659 Msa0338760:CDS
CCATAATTTATAGCCAATGA+TGG 0.477451 2_4:+59294019 None:intergenic
TTTAAGGTTGGCCTAGTGGT+TGG 0.481804 2_4:-59292371 Msa0338760:intron
TGAGCGCATTGGTGTGGACA+TGG 0.482172 2_4:+59294248 None:intergenic
GGAATTTCCAAAGCAACAAA+TGG 0.494078 2_4:-59291908 Msa0338760:CDS
CAAGAGAGAGAAAGCAATGA+AGG 0.494463 2_4:-59292750 Msa0338760:CDS
TGTTGAGTAGGTACCCTGAT+TGG 0.495576 2_4:-59292544 Msa0338760:CDS
TATAGAATTTGGTAAGGTGT+AGG 0.497097 2_4:+59294203 None:intergenic
GGACAATGATATTGTTGAGT+AGG 0.497423 2_4:-59292556 Msa0338760:CDS
TTTGGAGTATGAGCATAGGT+TGG 0.499601 2_4:+59291764 None:intergenic
GTCACGCACTTCATGACAAA+TGG 0.501275 2_4:+59291441 None:intergenic
GATCAGGTGAAATAGACATA+TGG 0.505098 2_4:-59293091 Msa0338760:CDS
GGAATGCAAGTTATTCTACT+TGG 0.506190 2_4:-59292612 Msa0338760:CDS
TTTGGAAGTAGTTACGAAGA+AGG 0.507891 2_4:-59293023 Msa0338760:CDS
TATATCATCCGACAGGTCCA+TGG 0.509546 2_4:+59293811 None:intergenic
GTGCAACTTGTGAGGAAACT+TGG 0.512966 2_4:+59293155 None:intergenic
CTCGTTTAAGGTTGGCCTAG+TGG 0.514354 2_4:-59292375 Msa0338760:intron
GTACAAATGATATAGCTTAG+TGG 0.522741 2_4:+59291523 None:intergenic
ATTCCATCAGCAAATCTCTC+AGG 0.523232 2_4:+59291926 None:intergenic
CTTGGAGTTTGCACATCTCA+AGG 0.525489 2_4:-59292340 Msa0338760:CDS
CATGGAAGTACCTGCTGGAG+TGG 0.525797 2_4:-59292020 Msa0338760:CDS
AATTCTTATAGACTTGTGCT+TGG 0.528002 2_4:-59293881 Msa0338760:CDS
ATGACTATTCAGCCAGAAAA+GGG 0.530494 2_4:-59291734 Msa0338760:CDS
CACTTGGTTTGGTATACACA+TGG 0.531670 2_4:-59293976 Msa0338760:CDS
TTACGAGAACAAGGATGTAA+AGG 0.531845 2_4:-59293905 Msa0338760:CDS
TGGCTTTATAGAATTTGGTA+AGG 0.531948 2_4:+59294197 None:intergenic
AGAACCTCGTACAAAATCAT+GGG 0.532420 2_4:+59292106 None:intergenic
AAGAAAACCTCCACTCCAGC+AGG 0.537685 2_4:+59292010 None:intergenic
TTCTTATAGACTTGTGCTTG+GGG 0.541211 2_4:-59293879 Msa0338760:CDS
ATATTCATCACTGTAACACT+TGG 0.543292 2_4:-59293992 Msa0338760:CDS
AGATATAAAGTTTGGAAACA+TGG 0.544012 2_4:-59292038 Msa0338760:CDS
ACATTGTCTTCAGATGGATC+AGG 0.548886 2_4:-59293107 Msa0338760:CDS
ATGAGTCTTGAAGATGTAGT+GGG 0.555679 2_4:-59292635 Msa0338760:CDS
TTGAAGGATTCATATAAGAT+GGG 0.557633 2_4:-59293854 Msa0338760:CDS
AGAGAGAAAGCAATGAAGGC+AGG 0.558808 2_4:-59292746 Msa0338760:CDS
CTGATTGGCAAGAACGTGCA+AGG 0.559141 2_4:-59292529 Msa0338760:CDS
TTTGGTGTTACTCGATATGT+TGG 0.561527 2_4:-59292064 Msa0338760:CDS
TTGCACGTTCTTGCCAATCA+GGG 0.561601 2_4:+59292531 None:intergenic
AGAAATGAAGCATCATTCAC+TGG 0.569094 2_4:-59294135 Msa0338760:five_prime_UTR
TAAATTTGGAGTATGAGCAT+AGG 0.569435 2_4:+59291760 None:intergenic
TACCAAATTCTATAAAGCCA+TGG 0.572331 2_4:-59294194 Msa0338760:five_prime_UTR
GGTTCTGTGAGAATCAGCCT+TGG 0.573057 2_4:+59293534 None:intergenic
AACTGAGAGTGTATCAGCCA+TGG 0.573408 2_4:+59294177 None:intergenic
GAACAAGTTGTTGAATGTAT+GGG 0.574114 2_4:+59293774 None:intergenic
GCAAGTTATTCTACTTGGCA+GGG 0.574471 2_4:-59292607 Msa0338760:CDS
ATCCAAACCCATGGACCTGT+CGG 0.574897 2_4:-59293819 Msa0338760:CDS
ATATCATCCGACAGGTCCAT+GGG 0.579220 2_4:+59293812 None:intergenic
GGATTTGGTTGAAGCCAAAG+AGG 0.579833 2_4:-59293940 Msa0338760:CDS
TTTGATCTTCAAAGAGAGCA+AGG 0.580321 2_4:-59292990 Msa0338760:CDS
AACAAGTGTGAAGCACATCA+TGG 0.581609 2_4:-59291488 Msa0338760:three_prime_UTR
GAGGCAACATTGTCTTCAGA+TGG 0.583162 2_4:-59293113 Msa0338760:CDS
AATGAGTCTTGAAGATGTAG+TGG 0.583983 2_4:-59292636 Msa0338760:CDS
GAGTCTTGAAGATGTAGTGG+GGG 0.584907 2_4:-59292633 Msa0338760:CDS
AATCTTTAATCCCTTTATGG+AGG 0.588764 2_4:-59292941 Msa0338760:intron
AATCCTGAGAGATTTGCTGA+TGG 0.589596 2_4:-59291929 Msa0338760:CDS
GTTGTTCCAGACCAAATGAA+AGG 0.593714 2_4:+59293558 None:intergenic
GAGAAGCTCTTACGAGAACA+AGG 0.594560 2_4:-59293914 Msa0338760:CDS
ATGCATCCTCCTTTGAGTAG+CGG 0.597575 2_4:+59292817 None:intergenic
GGAAGCCAAATCCAAACCCA+TGG 0.601321 2_4:-59293828 Msa0338760:CDS
TAATTCACGAGGGAGAAAAG+TGG 0.601713 2_4:-59293425 Msa0338760:CDS
GGAAACATGGAAGTACCTGC+TGG 0.602391 2_4:-59292025 Msa0338760:CDS
AAGATCTCAAGCCAACCACT+AGG 0.604113 2_4:+59292360 None:intergenic
TTTGGATAACATATAGATGG+TGG 0.607845 2_4:+59291386 None:intergenic
GAGCGCATTGGTGTGGACAT+GGG 0.608386 2_4:+59294249 None:intergenic
TGAGTCTTGAAGATGTAGTG+GGG 0.608707 2_4:-59292634 Msa0338760:CDS
CATTATTGTTGTGAGCGCAT+TGG 0.609848 2_4:+59294237 None:intergenic
TTGTTGTGAGCGCATTGGTG+TGG 0.618038 2_4:+59294242 None:intergenic
TTGGCAAGAACGTGCAAGGG+AGG 0.621711 2_4:-59292525 Msa0338760:CDS
TCATATCAGTGCAACTTGTG+AGG 0.621779 2_4:+59293147 None:intergenic
TTATACCTACCGCTACTCAA+AGG 0.629628 2_4:-59292826 Msa0338760:CDS
GGATTCATATAAGATGGGAA+AGG 0.630211 2_4:-59293849 Msa0338760:CDS
GAGGCATTATATCATCCGAC+AGG 0.634533 2_4:+59293804 None:intergenic
GGAAGTACCTGCTGGAGTGG+AGG 0.635276 2_4:-59292017 Msa0338760:CDS
CGAGTAACACCAAATGCAGG+TGG 0.637298 2_4:+59292073 None:intergenic
TAGTGGTCTTATAATTCACG+AGG 0.639438 2_4:-59293436 Msa0338760:CDS
TATCGAGTAACACCAAATGC+AGG 0.641498 2_4:+59292070 None:intergenic
TGATTGGCAAGAACGTGCAA+GGG 0.654798 2_4:-59292528 Msa0338760:CDS
AGAGAATAGAGAATGCAACA+AGG 0.661993 2_4:+59294078 None:intergenic
TACCTACCGCTACTCAAAGG+AGG 0.667366 2_4:-59292823 Msa0338760:CDS
TGATATGATTAGCAAATGGG+AGG 0.667892 2_4:-59293132 Msa0338760:CDS
CAACATAACAATGAACTATG+GGG 0.670836 2_4:-59291971 Msa0338760:CDS
AGTGGTCTTATAATTCACGA+GGG 0.680839 2_4:-59293435 Msa0338760:CDS
ACCTAATAAGTCATTCTCAG+TGG 0.687179 2_4:+59292718 None:intergenic
GAACCTCGTACAAAATCATG+GGG 0.698612 2_4:+59292107 None:intergenic
ATCCTCCTTTGAGTAGCGGT+AGG 0.699607 2_4:+59292821 None:intergenic
TTTGGTCTGGAACAACACCA+AGG 0.709600 2_4:-59293551 Msa0338760:CDS
TGAATGTATGGGATGACACG+AGG 0.718439 2_4:+59293785 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAACAATATTTTTTTG+CGG - chr2_4:59291938-59291957 Msa0338760:CDS 10.0%
!! TTAACTACATATTTATAAAT+TGG - chr2_4:59292223-59292242 Msa0338760:intron 10.0%
!! AATTACAATATAAACTTTAT+GGG + chr2_4:59293945-59293964 None:intergenic 10.0%
!! TAATTACAATATAAACTTTA+TGG + chr2_4:59293946-59293965 None:intergenic 10.0%
!!! AATTTGAAAATCTCATATTT+TGG + chr2_4:59292101-59292120 None:intergenic 15.0%
!!! ATTTTCAAATTTCTATTTAG+TGG - chr2_4:59292110-59292129 Msa0338760:CDS 15.0%
!! TTCTAATATAGTGATATATT+AGG - chr2_4:59292679-59292698 Msa0338760:CDS 15.0%
!!! AGATTTATATATTTTCCATT+TGG - chr2_4:59293679-59293698 Msa0338760:intron 15.0%
!! AGTAAAGAATAGAGAATTTA+TGG + chr2_4:59291454-59291473 None:intergenic 20.0%
!! TCTCTATTCTTTACTTAATT+TGG - chr2_4:59291459-59291478 Msa0338760:three_prime_UTR 20.0%
!!! TTTGTTTTATTAAACTCCTA+AGG + chr2_4:59291870-59291889 None:intergenic 20.0%
!! TGCATTCAATTACATTTAAA+AGG + chr2_4:59291976-59291995 None:intergenic 20.0%
!!! TTTTAAATGTAATTGAATGC+AGG - chr2_4:59291975-59291994 Msa0338760:CDS 20.0%
!! TTTAAATGTAATTGAATGCA+GGG - chr2_4:59291976-59291995 Msa0338760:CDS 20.0%
!!! TGACTATTATTTTTACTTGT+AGG - chr2_4:59292713-59292732 Msa0338760:CDS 20.0%
!!! TCAAAAGATGCAATTTTTAA+AGG + chr2_4:59293167-59293186 None:intergenic 20.0%
!!! TTCTTTTTGTTTTAGGAAAT+CGG - chr2_4:59293337-59293356 Msa0338760:intron 20.0%
!!! TGCAATTGTTTTTTAAAACT+TGG + chr2_4:59293366-59293385 None:intergenic 20.0%
!! TTATGTTGAAGCAAAATAAT+TGG + chr2_4:59293580-59293599 None:intergenic 20.0%
!!! TTTATATATTTTCCATTTGG+AGG - chr2_4:59293682-59293701 Msa0338760:intron 20.0%
!!! TTATATATTTTCCATTTGGA+GGG - chr2_4:59293683-59293702 Msa0338760:intron 20.0%
!! TGAATAGTCATTACTAAATT+TGG + chr2_4:59293820-59293839 None:intergenic 20.0%
!! AAATTTGGATAACATATAGA+TGG + chr2_4:59294183-59294202 None:intergenic 20.0%
! TTGAAGGATTCATATAAGAT+GGG - chr2_4:59291709-59291728 Msa0338760:CDS 25.0%
!! CAACAACTTGTTCAAATTTA+CGG - chr2_4:59291799-59291818 Msa0338760:CDS 25.0%
! TTTCCAGTTAGAAAAATTGA+AGG - chr2_4:59292190-59292209 Msa0338760:intron 25.0%
!! TAACCTTCAATTTTTCTAAC+TGG + chr2_4:59292196-59292215 None:intergenic 25.0%
! TGAAATCTTTAATCCCTTTA+TGG - chr2_4:59292619-59292638 Msa0338760:CDS 25.0%
!!! GAGGAAGTATTACAAATATT+TGG - chr2_4:59293057-59293076 Msa0338760:CDS 25.0%
! TTATTTAATCCTTCATAGTC+TGG + chr2_4:59293093-59293112 None:intergenic 25.0%
! TTCCTAAAACAAAAAGAACT+CGG + chr2_4:59293335-59293354 None:intergenic 25.0%
! AGATATAAAGTTTGGAAACA+TGG - chr2_4:59293525-59293544 Msa0338760:CDS 25.0%
! TTCAACATAACAATGAACTA+TGG - chr2_4:59293590-59293609 Msa0338760:intron 25.0%
! TCAACATAACAATGAACTAT+GGG - chr2_4:59293591-59293610 Msa0338760:intron 25.0%
!! TATATATTTTCCATTTGGAG+GGG - chr2_4:59293684-59293703 Msa0338760:intron 25.0%
! ACAATAATATGCGTTGTTAA+AGG - chr2_4:59294246-59294265 Msa0338760:five_prime_UTR 25.0%
TATAGAATTTGGTAAGGTGT+AGG + chr2_4:59291363-59291382 None:intergenic 30.0%
!! TGGCTTTATAGAATTTGGTA+AGG + chr2_4:59291369-59291388 None:intergenic 30.0%
TACCAAATTCTATAAAGCCA+TGG - chr2_4:59291369-59291388 Msa0338760:three_prime_UTR 30.0%
CCATAATTTATAGCCAATGA+TGG + chr2_4:59291547-59291566 None:intergenic 30.0%
! CCATCATTGGCTATAAATTA+TGG - chr2_4:59291544-59291563 Msa0338760:intron 30.0%
ATATTCATCACTGTAACACT+TGG - chr2_4:59291571-59291590 Msa0338760:intron 30.0%
AATTCTTATAGACTTGTGCT+TGG - chr2_4:59291682-59291701 Msa0338760:exon 30.0%
ATTCTTATAGACTTGTGCTT+GGG - chr2_4:59291683-59291702 Msa0338760:exon 30.0%
CTTGAAGGATTCATATAAGA+TGG - chr2_4:59291708-59291727 Msa0338760:CDS 30.0%
GAACAAGTTGTTGAATGTAT+GGG + chr2_4:59291792-59291811 None:intergenic 30.0%
TGAACAAGTTGTTGAATGTA+TGG + chr2_4:59291793-59291812 None:intergenic 30.0%
! AAGACATCTTTTATTAGCTC+TGG + chr2_4:59292053-59292072 None:intergenic 30.0%
GACACAAAATTTGAATCCTT+TGG - chr2_4:59292351-59292370 Msa0338760:CDS 30.0%
AATAAGGAAGAAACAACCAA+AGG + chr2_4:59292370-59292389 None:intergenic 30.0%
CACTGATATGATTAGCAAAT+GGG - chr2_4:59292428-59292447 Msa0338760:intron 30.0%
!! ATCACTTGTCAAGTTTTGTA+GGG + chr2_4:59292502-59292521 None:intergenic 30.0%
AATCTTTAATCCCTTTATGG+AGG - chr2_4:59292622-59292641 Msa0338760:CDS 30.0%
!! ATTAGTCTTACCTCCATAAA+GGG + chr2_4:59292635-59292654 None:intergenic 30.0%
TTCCATGATCTCTAATTTCT+TGG + chr2_4:59292891-59292910 None:intergenic 30.0%
TCATGGAAACAACAAGAATA+TGG - chr2_4:59292903-59292922 Msa0338760:intron 30.0%
CATGGAAACAACAAGAATAT+GGG - chr2_4:59292904-59292923 Msa0338760:intron 30.0%
AACAAAAAACCAGACTATGA+AGG - chr2_4:59293081-59293100 Msa0338760:CDS 30.0%
!!! TACCGAGTTCTTTTTGTTTT+AGG - chr2_4:59293330-59293349 Msa0338760:intron 30.0%
GTTGGCAAAGATATAAAGTT+TGG - chr2_4:59293517-59293536 Msa0338760:CDS 30.0%
CAACATAACAATGAACTATG+GGG - chr2_4:59293592-59293611 Msa0338760:intron 30.0%
! AAATCTACCATTTGTTGCTT+TGG + chr2_4:59293665-59293684 None:intergenic 30.0%
! ATATATTTTCCATTTGGAGG+GGG - chr2_4:59293685-59293704 Msa0338760:intron 30.0%
! TAAATTTGGAGTATGAGCAT+AGG + chr2_4:59293806-59293825 None:intergenic 30.0%
! AGCATCACAGTAAGATTTTA+AGG - chr2_4:59293890-59293909 Msa0338760:CDS 30.0%
GTACAAATGATATAGCTTAG+TGG + chr2_4:59294043-59294062 None:intergenic 30.0%
TTTGGATAACATATAGATGG+TGG + chr2_4:59294180-59294199 None:intergenic 30.0%
!! AGCCATGGCTTTATAGAATT+TGG + chr2_4:59291374-59291393 None:intergenic 35.0%
! AGAAATGAAGCATCATTCAC+TGG - chr2_4:59291428-59291447 Msa0338760:three_prime_UTR 35.0%
AGAGAATAGAGAATGCAACA+AGG + chr2_4:59291488-59291507 None:intergenic 35.0%
TTACGAGAACAAGGATGTAA+AGG - chr2_4:59291658-59291677 Msa0338760:intron 35.0%
TTCTTATAGACTTGTGCTTG+GGG - chr2_4:59291684-59291703 Msa0338760:exon 35.0%
GGATTCATATAAGATGGGAA+AGG - chr2_4:59291714-59291733 Msa0338760:CDS 35.0%
AAGAATCCTTTCATTTGGTC+TGG - chr2_4:59291999-59292018 Msa0338760:CDS 35.0%
!! TAGTGGTCTTATAATTCACG+AGG - chr2_4:59292127-59292146 Msa0338760:intron 35.0%
!! AGTGGTCTTATAATTCACGA+GGG - chr2_4:59292128-59292147 Msa0338760:intron 35.0%
! AAAAGTGGAGAAAGCATAGA+AGG - chr2_4:59292153-59292172 Msa0338760:intron 35.0%
! GCACTGATATGATTAGCAAA+TGG - chr2_4:59292427-59292446 Msa0338760:intron 35.0%
TGATATGATTAGCAAATGGG+AGG - chr2_4:59292431-59292450 Msa0338760:intron 35.0%
GATCAGGTGAAATAGACATA+TGG - chr2_4:59292472-59292491 Msa0338760:CDS 35.0%
!! CATCACTTGTCAAGTTTTGT+AGG + chr2_4:59292503-59292522 None:intergenic 35.0%
!! GTTATTTCTCGAAACGCATT+TGG - chr2_4:59292522-59292541 Msa0338760:CDS 35.0%
TTTGGAAGTAGTTACGAAGA+AGG - chr2_4:59292540-59292559 Msa0338760:CDS 35.0%
TTTGATCTTCAAAGAGAGCA+AGG - chr2_4:59292573-59292592 Msa0338760:CDS 35.0%
!! GATTAGTCTTACCTCCATAA+AGG + chr2_4:59292636-59292655 None:intergenic 35.0%
ACCTAATAAGTCATTCTCAG+TGG + chr2_4:59292848-59292867 None:intergenic 35.0%
CATGATCTCTAATTTCTTGG+TGG + chr2_4:59292888-59292907 None:intergenic 35.0%
CACCAAGAAATTAGAGATCA+TGG - chr2_4:59292886-59292905 Msa0338760:intron 35.0%
AATGAGTCTTGAAGATGTAG+TGG - chr2_4:59292927-59292946 Msa0338760:intron 35.0%
ATGAGTCTTGAAGATGTAGT+GGG - chr2_4:59292928-59292947 Msa0338760:intron 35.0%
GGAATGCAAGTTATTCTACT+TGG - chr2_4:59292951-59292970 Msa0338760:CDS 35.0%
CTACTTCAACTATGCTTGTT+TGG - chr2_4:59292986-59293005 Msa0338760:CDS 35.0%
GGACAATGATATTGTTGAGT+AGG - chr2_4:59293007-59293026 Msa0338760:CDS 35.0%
! GCATCTTTTGAACTCGTTTA+AGG - chr2_4:59293176-59293195 Msa0338760:intron 35.0%
!! CTTTTGAACTCGTTTAAGGT+TGG - chr2_4:59293180-59293199 Msa0338760:intron 35.0%
AGAACCTCGTACAAAATCAT+GGG + chr2_4:59293460-59293479 None:intergenic 35.0%
TAGAACCTCGTACAAAATCA+TGG + chr2_4:59293461-59293480 None:intergenic 35.0%
!! TTTGGTGTTACTCGATATGT+TGG - chr2_4:59293499-59293518 Msa0338760:CDS 35.0%
GGAATTTCCAAAGCAACAAA+TGG - chr2_4:59293655-59293674 Msa0338760:intron 35.0%
! GGGACAAAACTTTTCACTAT+TGG - chr2_4:59293723-59293742 Msa0338760:intron 35.0%
TTCACTATTGGAAGCAAAGA+TGG - chr2_4:59293735-59293754 Msa0338760:intron 35.0%
AATGACTATTCAGCCAGAAA+AGG - chr2_4:59293828-59293847 Msa0338760:CDS 35.0%
ATGACTATTCAGCCAGAAAA+GGG - chr2_4:59293829-59293848 Msa0338760:CDS 35.0%
! GATGGTGGCAAAAATATAGA+TGG + chr2_4:59294165-59294184 None:intergenic 35.0%
CATTATTGTTGTGAGCGCAT+TGG + chr2_4:59291329-59291348 None:intergenic 40.0%
ATCACCTACAAGCAGAGAAA+TGG - chr2_4:59291519-59291538 Msa0338760:three_prime_UTR 40.0%
CAGAGAAATGGAACCATCAT+TGG - chr2_4:59291531-59291550 Msa0338760:intron 40.0%
CATCACTGTAACACTTGGTT+TGG - chr2_4:59291576-59291595 Msa0338760:intron 40.0%
!! CACTTGGTTTGGTATACACA+TGG - chr2_4:59291587-59291606 Msa0338760:intron 40.0%
TCAATCGAGCAACACTTACA+TGG - chr2_4:59291837-59291856 Msa0338760:CDS 40.0%
CAGGGAAGAATCCTTTCATT+TGG - chr2_4:59291994-59292013 Msa0338760:CDS 40.0%
GTTGTTCCAGACCAAATGAA+AGG + chr2_4:59292008-59292027 None:intergenic 40.0%
TAATTCACGAGGGAGAAAAG+TGG - chr2_4:59292138-59292157 Msa0338760:intron 40.0%
! CTTGCACAAGTGTATTTTGC+AGG + chr2_4:59292280-59292299 None:intergenic 40.0%
CCATGATCTGTGGTGTAATA+AGG + chr2_4:59292386-59292405 None:intergenic 40.0%
CCTTATTACACCACAGATCA+TGG - chr2_4:59292383-59292402 Msa0338760:intron 40.0%
TCATATCAGTGCAACTTGTG+AGG + chr2_4:59292419-59292438 None:intergenic 40.0%
ACATTGTCTTCAGATGGATC+AGG - chr2_4:59292456-59292475 Msa0338760:intron 40.0%
!! CTTGTCAAGTTTTGTAGGGA+AGG + chr2_4:59292498-59292517 None:intergenic 40.0%
TTATACCTACCGCTACTCAA+AGG - chr2_4:59292737-59292756 Msa0338760:CDS 40.0%
CAAGAGAGAGAAAGCAATGA+AGG - chr2_4:59292813-59292832 Msa0338760:CDS 40.0%
GCCACTGAGAATGACTTATT+AGG - chr2_4:59292844-59292863 Msa0338760:intron 40.0%
TGAGTCTTGAAGATGTAGTG+GGG - chr2_4:59292929-59292948 Msa0338760:intron 40.0%
TGCAAGTTATTCTACTTGGC+AGG - chr2_4:59292955-59292974 Msa0338760:CDS 40.0%
GCAAGTTATTCTACTTGGCA+GGG - chr2_4:59292956-59292975 Msa0338760:CDS 40.0%
!!! GTCCATACTCTGGTTTTAGT+CGG - chr2_4:59293294-59293313 Msa0338760:intron 40.0%
AACCGACTAAAACCAGAGTA+TGG + chr2_4:59293299-59293318 None:intergenic 40.0%
!! GTTTTAGTCGGTTCTTGGAT+CGG - chr2_4:59293306-59293325 Msa0338760:intron 40.0%
GAACCTCGTACAAAATCATG+GGG + chr2_4:59293459-59293478 None:intergenic 40.0%
AGATTGTATCCACCTGCATT+TGG - chr2_4:59293481-59293500 Msa0338760:CDS 40.0%
TATCGAGTAACACCAAATGC+AGG + chr2_4:59293496-59293515 None:intergenic 40.0%
!! AATCCTGAGAGATTTGCTGA+TGG - chr2_4:59293634-59293653 Msa0338760:intron 40.0%
ATTCCATCAGCAAATCTCTC+AGG + chr2_4:59293640-59293659 None:intergenic 40.0%
! TTTTGTCCCATACAGACTCT+AGG + chr2_4:59293712-59293731 None:intergenic 40.0%
! TTTGGAGTATGAGCATAGGT+TGG + chr2_4:59293802-59293821 None:intergenic 40.0%
! ATAACATGAGCACCCTTTTC+TGG + chr2_4:59293844-59293863 None:intergenic 40.0%
ACCTGTAGGTGCAAGAAAAA+TGG + chr2_4:59294019-59294038 None:intergenic 40.0%
TATAGCTTAGTGGTACCTGT+AGG + chr2_4:59294033-59294052 None:intergenic 40.0%
AACAAGTGTGAAGCACATCA+TGG - chr2_4:59294075-59294094 Msa0338760:five_prime_UTR 40.0%
ATGAAGTGCGTGACACTTAA+TGG - chr2_4:59294131-59294150 Msa0338760:five_prime_UTR 40.0%
! AACTGAGAGTGTATCAGCCA+TGG + chr2_4:59291389-59291408 None:intergenic 45.0%
GGTTCCATTTCTCTGCTTGT+AGG + chr2_4:59291526-59291545 None:intergenic 45.0%
!! ACACATGGAGAGTGCTGAAT+TGG - chr2_4:59291602-59291621 Msa0338760:intron 45.0%
!! GGAGAGTGCTGAATTGGATT+TGG - chr2_4:59291608-59291627 Msa0338760:intron 45.0%
! GGATTTGGTTGAAGCCAAAG+AGG - chr2_4:59291623-59291642 Msa0338760:intron 45.0%
AAGAGCTTCTCTAGCCTCTT+TGG + chr2_4:59291640-59291659 None:intergenic 45.0%
GAGAAGCTCTTACGAGAACA+AGG - chr2_4:59291649-59291668 Msa0338760:intron 45.0%
ATATCATCCGACAGGTCCAT+GGG + chr2_4:59291754-59291773 None:intergenic 45.0%
TATATCATCCGACAGGTCCA+TGG + chr2_4:59291755-59291774 None:intergenic 45.0%
! GAGGCATTATATCATCCGAC+AGG + chr2_4:59291762-59291781 None:intergenic 45.0%
TGAATGTATGGGATGACACG+AGG + chr2_4:59291781-59291800 None:intergenic 45.0%
CTTACATGGTCACAAGCCTT+AGG - chr2_4:59291851-59291870 Msa0338760:CDS 45.0%
! TTTGGTCTGGAACAACACCA+AGG - chr2_4:59292012-59292031 Msa0338760:CDS 45.0%
!! AAACTTGGTGCCATGATCTG+TGG + chr2_4:59292396-59292415 None:intergenic 45.0%
GTGCAACTTGTGAGGAAACT+TGG + chr2_4:59292411-59292430 None:intergenic 45.0%
GAGGCAACATTGTCTTCAGA+TGG - chr2_4:59292450-59292469 Msa0338760:intron 45.0%
ATGCATCCTCCTTTGAGTAG+CGG + chr2_4:59292749-59292768 None:intergenic 45.0%
AGAGAGAAAGCAATGAAGGC+AGG - chr2_4:59292817-59292836 Msa0338760:CDS 45.0%
GAGTCTTGAAGATGTAGTGG+GGG - chr2_4:59292930-59292949 Msa0338760:intron 45.0%
TGTTGAGTAGGTACCCTGAT+TGG - chr2_4:59293019-59293038 Msa0338760:CDS 45.0%
TTGCACGTTCTTGCCAATCA+GGG + chr2_4:59293035-59293054 None:intergenic 45.0%
TGATTGGCAAGAACGTGCAA+GGG - chr2_4:59293035-59293054 Msa0338760:CDS 45.0%
!! TTTAAGGTTGGCCTAGTGGT+TGG - chr2_4:59293192-59293211 Msa0338760:intron 45.0%
AAGATCTCAAGCCAACCACT+AGG + chr2_4:59293206-59293225 None:intergenic 45.0%
!! TAGTGGTTGGCTTGAGATCT+TGG - chr2_4:59293205-59293224 Msa0338760:intron 45.0%
CTTGGAGTTTGCACATCTCA+AGG - chr2_4:59293223-59293242 Msa0338760:intron 45.0%
TTTGCACATCTCAAGGTCTC+AGG - chr2_4:59293230-59293249 Msa0338760:intron 45.0%
!!! CTCTGGTTTTAGTCGGTTCT+TGG - chr2_4:59293301-59293320 Msa0338760:intron 45.0%
!!! GCCATTTTTCTTGCACCTAC+AGG - chr2_4:59294015-59294034 Msa0338760:CDS 45.0%
GTCACGCACTTCATGACAAA+TGG + chr2_4:59294125-59294144 None:intergenic 45.0%
!! TAAAAATATATAAACTTTAT+TGG - chr2_4:59293395-59293414 Msa0338760:CDS 5.0%
!! TGAATAATTAAATTTAAATT+TGG + chr2_4:59294198-59294217 None:intergenic 5.0%
! TTGTTGTGAGCGCATTGGTG+TGG + chr2_4:59291324-59291343 None:intergenic 50.0%
ACTTGTGCTTGGGGACTTGA+AGG - chr2_4:59291693-59291712 Msa0338760:exon 50.0%
GGAAGCCAAATCCAAACCCA+TGG - chr2_4:59291735-59291754 Msa0338760:CDS 50.0%
CAGGTCCATGGGTTTGGATT+TGG + chr2_4:59291743-59291762 None:intergenic 50.0%
ATCCAAACCCATGGACCTGT+CGG - chr2_4:59291744-59291763 Msa0338760:CDS 50.0%
GGTTCTGTGAGAATCAGCCT+TGG + chr2_4:59292032-59292051 None:intergenic 50.0%
TACCTACCGCTACTCAAAGG+AGG - chr2_4:59292740-59292759 Msa0338760:CDS 50.0%
ATCCTCCTTTGAGTAGCGGT+AGG + chr2_4:59292745-59292764 None:intergenic 50.0%
CTTGCACGTTCTTGCCAATC+AGG + chr2_4:59293036-59293055 None:intergenic 50.0%
CTGATTGGCAAGAACGTGCA+AGG - chr2_4:59293034-59293053 Msa0338760:CDS 50.0%
!! CTCGTTTAAGGTTGGCCTAG+TGG - chr2_4:59293188-59293207 Msa0338760:intron 50.0%
AACTTAACACCAAGGGCCAG+GGG + chr2_4:59293264-59293283 None:intergenic 50.0%
GAACTTAACACCAAGGGCCA+GGG + chr2_4:59293265-59293284 None:intergenic 50.0%
TGAACTTAACACCAAGGGCC+AGG + chr2_4:59293266-59293285 None:intergenic 50.0%
!! GCCCTTGGTGTTAAGTTCAG+CGG - chr2_4:59293267-59293286 Msa0338760:intron 50.0%
CCCGCTGAACTTAACACCAA+GGG + chr2_4:59293271-59293290 None:intergenic 50.0%
!! CCCTTGGTGTTAAGTTCAGC+GGG - chr2_4:59293268-59293287 Msa0338760:intron 50.0%
! GCTCCCCATGATTTTGTACG+AGG - chr2_4:59293453-59293472 Msa0338760:CDS 50.0%
CGAGTAACACCAAATGCAGG+TGG + chr2_4:59293493-59293512 None:intergenic 50.0%
!! GGAAACATGGAAGTACCTGC+TGG - chr2_4:59293538-59293557 Msa0338760:CDS 50.0%
AAGAAAACCTCCACTCCAGC+AGG + chr2_4:59293556-59293575 None:intergenic 50.0%
! GAGCGCATTGGTGTGGACAT+GGG + chr2_4:59291317-59291336 None:intergenic 55.0%
! TGAGCGCATTGGTGTGGACA+TGG + chr2_4:59291318-59291337 None:intergenic 55.0%
ATCCGACAGGTCCATGGGTT+TGG + chr2_4:59291749-59291768 None:intergenic 55.0%
TTGGCAAGAACGTGCAAGGG+AGG - chr2_4:59293038-59293057 Msa0338760:CDS 55.0%
GTCTCAGGTTTGATTCCCCC+TGG - chr2_4:59293245-59293264 Msa0338760:intron 55.0%
ACTTAACACCAAGGGCCAGG+GGG + chr2_4:59293263-59293282 None:intergenic 55.0%
GCCCGCTGAACTTAACACCA+AGG + chr2_4:59293272-59293291 None:intergenic 55.0%
!! CATGGAAGTACCTGCTGGAG+TGG - chr2_4:59293543-59293562 Msa0338760:CDS 55.0%
!! ACTCTAGGACCCCCTCCAAA+TGG + chr2_4:59293697-59293716 None:intergenic 55.0%
AGGGGGTCCTAGAGTCTGTA+TGG - chr2_4:59293702-59293721 Msa0338760:intron 55.0%
GGGGGTCCTAGAGTCTGTAT+GGG - chr2_4:59293703-59293722 Msa0338760:intron 55.0%
GTTTGATTCCCCCTGGCCCT+TGG - chr2_4:59293252-59293271 Msa0338760:intron 60.0%
CAGCGGGCAAGTCCATACTC+TGG - chr2_4:59293284-59293303 Msa0338760:intron 60.0%
!! GGAAGTACCTGCTGGAGTGG+AGG - chr2_4:59293546-59293565 Msa0338760:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 59291308 59294277 59291308 ID=Msa0338760;Name=Msa0338760
chr2_4 mRNA 59291308 59294277 59291308 ID=Msa0338760-mRNA-1;Parent=Msa0338760;Name=Msa0338760-mRNA-1;_AED=0.07;_eAED=0.07;_QI=230|0.66|0.85|0.85|0.83|0.71|7|267|538
chr2_4 exon 59291308 59291548 59291308 ID=Msa0338760-mRNA-1:exon:18420;Parent=Msa0338760-mRNA-1
chr2_4 exon 59291674 59292131 59291674 ID=Msa0338760-mRNA-1:exon:18419;Parent=Msa0338760-mRNA-1
chr2_4 exon 59292334 59292387 59292334 ID=Msa0338760-mRNA-1:exon:18418;Parent=Msa0338760-mRNA-1
chr2_4 exon 59292463 59292850 59292463 ID=Msa0338760-mRNA-1:exon:18417;Parent=Msa0338760-mRNA-1
chr2_4 exon 59292942 59293186 59292942 ID=Msa0338760-mRNA-1:exon:18416;Parent=Msa0338760-mRNA-1
chr2_4 exon 59293374 59293588 59293374 ID=Msa0338760-mRNA-1:exon:18415;Parent=Msa0338760-mRNA-1
chr2_4 exon 59293765 59294277 59293765 ID=Msa0338760-mRNA-1:exon:18414;Parent=Msa0338760-mRNA-1
chr2_4 five_prime_UTR 59294048 59294277 59294048 ID=Msa0338760-mRNA-1:five_prime_utr;Parent=Msa0338760-mRNA-1
chr2_4 CDS 59293765 59294047 59293765 ID=Msa0338760-mRNA-1:cds;Parent=Msa0338760-mRNA-1
chr2_4 CDS 59293374 59293588 59293374 ID=Msa0338760-mRNA-1:cds;Parent=Msa0338760-mRNA-1
chr2_4 CDS 59292942 59293186 59292942 ID=Msa0338760-mRNA-1:cds;Parent=Msa0338760-mRNA-1
chr2_4 CDS 59292463 59292850 59292463 ID=Msa0338760-mRNA-1:cds;Parent=Msa0338760-mRNA-1
chr2_4 CDS 59292334 59292387 59292334 ID=Msa0338760-mRNA-1:cds;Parent=Msa0338760-mRNA-1
chr2_4 CDS 59291700 59292131 59291700 ID=Msa0338760-mRNA-1:cds;Parent=Msa0338760-mRNA-1
chr2_4 three_prime_UTR 59291674 59291699 59291674 ID=Msa0338760-mRNA-1:three_prime_utr;Parent=Msa0338760-mRNA-1
chr2_4 three_prime_UTR 59291308 59291548 59291308 ID=Msa0338760-mRNA-1:three_prime_utr;Parent=Msa0338760-mRNA-1
Gene Sequence

>Msa0338760

ATGGAACCATCATTGGCTATAAATTATGGCATAATATTCATCACTGTAACACTTGGTTTGGTATACACATGGAGAGTGCTGAATTGGATTTGGTTGAAGCCAAAGAGGCTAGAGAAGCTCTTACGAGAACAAGGATGTAAAGGAAATTCTTATAGACTTGTGCTTGGGGACTTGAAGGATTCATATAAGATGGGAAAGGAAGCCAAATCCAAACCCATGGACCTGTCGGATGATATAATGCCTCGTGTCATCCCATACATTCAACAACTTGTTCAAATTTACGGGAAGAATCCTTTCATTTGGTCTGGAACAACACCAAGGCTGATTCTCACAGAACCAGAGCTAATAAAAGATGTCTTAAACAGAACTTCTGAATTACAAAAGCCAAAATATGAGATTTTCAAATTTCTATTTAGTGGTCTTATAATTCACGAGGGAGAAAAGTGGAGAAAGCATAGAAGGCTAATGAACGCTGCTTTCCAGTTAGAAAAATTGAAGATCATGGCACCAAGTTTCCTCACAAGTTGCACTGATATGATTAGCAAATGGGAGGCAACATTGTCTTCAGATGGATCAGGTGAAATAGACATATGGCCTTCCCTACAAAACTTGACAAGTGATGTTATTTCTCGAAACGCATTTGGAAGTAGTTACGAAGAAGGAAAAAGAATATTTGATCTTCAAAGAGAGCAAGGTGAACTTGTAATGAAAAATCTTGTGAAATCTTTAATCCCTTTATGGAGGTTTATACCTACCGCTACTCAAAGGAGGATGCATGAAATTGAAAAAGATATAGATTCTTCTCTTAGATATATAATTAACAAGAGAGAGAAAGCAATGAAGGCAGGTGAAGCCACTGAGAATGACTTATTAGGTCTTCTTCTAGAGTCAAACCACCAAGAAATTAGAGATCATGGAAACAACAAGAATATGGGAATGAGTCTTGAAGATGTAGTGGGGGAATGCAAGTTATTCTACTTGGCAGGGCAAGAATCTACTTCAACTATGCTTGTTTGGACAATGATATTGTTGAGTAGGTACCCTGATTGGCAAGAACGTGCAAGGGAGGAAGTATTACAAATATTTGGCAACAAAAAACCAGACTATGAAGGATTAAATAAACTTAAGATTGTTGGCCTAGTGGTTGGCTTGAGATCTTGGAGTTTGCACATCTCAAGGTCTCAGCTCCCCATGATTTTGTACGAGGTTCTAAGATTGTATCCACCTGCATTTGGTGTTACTCGATATGTTGGCAAAGATATAAAGTTTGGAAACATGGAAGTACCTGCTGGAGTGGAGGTTTTCTTACCAATTATTTTGCTTCAACATAACAATGAACTATGGGGTGATGATGCAAAGATGTTCAATCCTGAGAGATTTGCTGATGGAATTTCCAAAGCAACAAATGGTAGATTTATATATTTTCCATTTGGAGGGGGTCCTAGAGTCTGTATGGGACAAAACTTTTCACTATTGGAAGCAAAGATGGCAGTGTCAATGATTTTACAAAATTTTTACTTTGAACTTTCTCCAACCTATGCTCATACTCCAAATTTAGTAATGACTATTCAGCCAGAAAAGGGTGCTCATGTTATTCTACGCAAAGTGAAAACATAA
Protein sequence

>Msa0338760

MEPSLAINYGIIFITVTLGLVYTWRVLNWIWLKPKRLEKLLREQGCKGNSYRLVLGDLKDSYKMGKEAKSKPMDLSDDIMPRVIPYIQQLVQIYGKNPFIWSGTTPRLILTEPELIKDVLNRTSELQKPKYEIFKFLFSGLIIHEGEKWRKHRRLMNAAFQLEKLKIMAPSFLTSCTDMISKWEATLSSDGSGEIDIWPSLQNLTSDVISRNAFGSSYEEGKRIFDLQREQGELVMKNLVKSLIPLWRFIPTATQRRMHEIEKDIDSSLRYIINKREKAMKAGEATENDLLGLLLESNHQEIRDHGNNKNMGMSLEDVVGECKLFYLAGQESTSTMLVWTMILLSRYPDWQERAREEVLQIFGNKKPDYEGLNKLKIVGLVVGLRSWSLHISRSQLPMILYEVLRLYPPAFGVTRYVGKDIKFGNMEVPAGVEVFLPIILLQHNNELWGDDAKMFNPERFADGISKATNGRFIYFPFGGGPRVCMGQNFSLLEAKMAVSMILQNFYFELSPTYAHTPNLVMTIQPEKGAHVILRKVKT*