AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0277340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277340 MtrunA17_Chr2g0290191 96.624 474 16 0 1 474 1 474 0.0 934
Msa0277340 MtrunA17_Chr5g0447761 57.783 469 189 7 2 467 4 466 3.87e-166 479
Msa0277340 MtrunA17_Chr3g0101061 55.252 476 192 11 2 467 38 502 3.30e-160 465
Msa0277340 MtrunA17_Chr1g0186351 60.204 196 64 2 2 188 4 194 3.15e-79 255
Msa0277340 MtrunA17_Chr3g0135111 51.852 189 86 1 2 185 8 196 1.58e-56 193
Msa0277340 MtrunA17_Chr3g0120721 39.891 183 95 2 3 184 17 185 4.26e-44 159
Msa0277340 MtrunA17_Chr6g0449481 31.965 341 162 7 3 339 44 318 3.77e-41 152
Msa0277340 MtrunA17_Chr5g0402191 36.000 200 111 4 1 198 1 185 9.48e-35 134
Msa0277340 MtrunA17_Chr5g0402191 27.358 212 122 4 5 185 93 303 1.32e-19 90.9
Msa0277340 MtrunA17_Chr5g0402191 37.500 112 67 1 5 113 226 337 1.01e-11 66.6
Msa0277340 MtrunA17_Chr8g0375101 36.408 206 112 5 1 202 1 191 1.12e-33 131
Msa0277340 MtrunA17_Chr3g0144311 30.588 170 91 5 5 168 30 178 4.66e-20 90.5
Msa0277340 MtrunA17_Chr5g0426311 50.000 68 33 1 5 71 17 84 4.46e-19 87.4
Msa0277340 MtrunA17_Chr8g0346011 36.885 122 73 2 5 125 38 156 3.07e-18 85.5
Msa0277340 MtrunA17_Chr3g0127751 42.169 83 47 1 5 86 27 109 7.91e-18 83.2
Msa0277340 MtrunA17_Chr4g0058151 30.978 184 106 4 5 181 123 292 1.18e-17 83.6
Msa0277340 MtrunA17_Chr4g0058151 32.540 126 81 2 102 226 118 240 1.16e-11 65.9
Msa0277340 MtrunA17_Chr4g0045921 29.167 192 115 4 5 191 77 252 1.52e-17 84.3
Msa0277340 MtrunA17_Chr4g0017401 42.647 68 38 1 5 71 17 84 2.98e-17 82.0
Msa0277340 MtrunA17_Chr8g0360551 26.816 179 119 3 5 182 74 241 4.90e-17 83.6
Msa0277340 MtrunA17_Chr7g0219021 46.988 83 42 1 1 81 37 119 5.23e-17 80.9
Msa0277340 MtrunA17_Chr1g0181111 30.159 189 119 5 5 181 85 272 8.54e-17 80.9
Msa0277340 MtrunA17_Chr7g0276531 47.059 68 35 1 5 71 19 86 2.45e-16 79.0
Msa0277340 MtrunA17_Chr5g0440831 23.784 185 131 3 1 182 160 337 2.80e-15 78.6
Msa0277340 MtrunA17_Chr3g0116631 30.256 195 117 6 4 193 109 289 3.48e-15 76.3
Msa0277340 MtrunA17_Chr2g0278661 41.463 82 46 1 2 81 5 86 1.50e-14 73.6
Msa0277340 MtrunA17_Chr3g0121631 42.683 82 46 1 1 81 33 114 1.62e-14 70.9
Msa0277340 MtrunA17_Chr7g0255011 22.905 179 137 1 5 182 128 306 3.77e-14 74.7
Msa0277340 MtrunA17_Chr7g0267571 27.411 197 128 6 2 190 107 296 9.72e-14 72.4
Msa0277340 MtrunA17_Chr3g0119311 38.947 95 54 2 5 95 37 131 3.03e-13 67.0
Msa0277340 MtrunA17_Chr1g0153871 30.682 176 105 6 6 176 192 355 5.06e-13 71.2
Msa0277340 MtrunA17_Chr4g0035051 36.842 76 46 1 5 78 9 84 6.31e-13 65.5
Msa0277340 MtrunA17_Chr4g0050781 36.709 79 48 1 5 81 8 86 9.17e-13 67.4
Msa0277340 MtrunA17_Chr4g0050781 36.709 79 49 1 107 184 8 86 3.20e-12 65.9
Msa0277340 MtrunA17_Chr7g0266751 41.026 78 44 1 5 80 33 110 9.70e-13 65.9
Msa0277340 MtrunA17_Chr1g0210241 39.241 79 46 1 5 81 8 86 1.24e-12 68.6
Msa0277340 MtrunA17_Chr1g0210241 36.709 79 49 1 107 184 8 86 1.89e-12 67.8
Msa0277340 MtrunA17_Chr2g0327921 39.286 84 42 2 107 185 8 87 1.56e-12 63.5
Msa0277340 MtrunA17_Chr4g0061451 41.772 79 44 1 5 81 43 121 1.87e-12 67.8
Msa0277340 MtrunA17_Chr4g0035031 38.158 76 45 1 5 78 9 84 3.48e-12 65.5
Msa0277340 MtrunA17_Chr3g0110211 28.000 225 131 7 7 226 28 226 5.46e-12 67.4
Msa0277340 MtrunA17_Chr6g0466451 27.389 157 108 4 11 164 113 266 6.33e-12 67.8
Msa0277340 MtrunA17_Chr6g0465631 27.389 157 108 4 11 164 113 266 6.38e-12 67.8
Msa0277340 MtrunA17_Chr2g0328791 27.568 185 115 5 6 184 17 188 7.40e-12 67.4
Msa0277340 MtrunA17_Chr4g0074711 27.374 179 109 6 6 176 169 334 1.37e-11 66.6
Msa0277340 MtrunA17_Chr7g0268551 23.345 287 165 8 5 265 17 274 1.53e-11 66.2
Msa0277340 MtrunA17_Chr7g0219031 49.057 53 27 0 1 53 37 89 1.61e-11 61.6
Msa0277340 MtrunA17_Chr4g0035001 36.842 76 46 1 5 78 7 82 1.64e-11 62.8
Msa0277340 MtrunA17_Chr1g0177101 27.568 185 118 5 5 182 109 284 1.68e-11 65.5
Msa0277340 MtrunA17_Chr1g0201151 26.816 179 112 7 6 176 211 378 3.01e-11 65.9
Msa0277340 MtrunA17_Chr4g0044541 25.281 178 110 4 6 181 36 192 6.81e-11 65.1
Msa0277340 MtrunA17_Chr4g0070231 29.885 174 93 6 6 157 133 299 8.60e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277340 AT3G07810.1 52.016 496 219 11 2 483 4 494 3.57e-142 419
Msa0277340 AT3G07810.2 53.015 481 210 10 2 468 4 482 7.07e-142 418
Msa0277340 AT5G47620.1 59.831 356 131 7 1 354 3 348 8.78e-134 395
Msa0277340 AT5G47620.2 59.831 356 131 7 1 354 3 348 8.78e-134 395
Msa0277340 AT5G47620.5 59.831 356 131 7 1 354 3 348 8.78e-134 395
Msa0277340 AT5G47620.4 56.349 378 131 8 1 354 3 370 7.52e-129 383
Msa0277340 AT4G26650.2 48.148 486 165 19 2 461 10 434 3.60e-117 353
Msa0277340 AT4G26650.1 48.148 486 165 19 2 461 13 437 4.91e-117 353
Msa0277340 AT5G55550.5 58.485 330 108 12 2 317 4 318 1.32e-109 333
Msa0277340 AT5G55550.4 58.485 330 108 12 2 317 4 318 1.32e-109 333
Msa0277340 AT5G55550.9 58.485 330 108 12 2 317 4 318 1.32e-109 333
Msa0277340 AT5G55550.7 58.485 330 108 12 2 317 4 318 1.32e-109 333
Msa0277340 AT5G55550.1 58.485 330 108 12 2 317 4 318 1.32e-109 333
Msa0277340 AT5G55550.2 58.485 330 108 12 2 317 4 318 2.23e-109 333
Msa0277340 AT5G55550.3 58.485 330 108 12 2 317 4 318 2.23e-109 333
Msa0277340 AT5G55550.6 58.485 330 108 12 2 317 4 318 2.23e-109 333
Msa0277340 AT5G55550.11 58.485 330 108 12 2 317 4 318 2.23e-109 333
Msa0277340 AT5G55550.8 51.194 377 108 13 2 317 4 365 1.50e-100 312
Msa0277340 AT5G55550.10 51.194 377 108 13 2 317 4 365 1.50e-100 312
Msa0277340 AT5G47620.3 55.634 284 114 7 73 354 15 288 1.90e-87 274
Msa0277340 AT5G47620.3 36.709 79 49 1 5 82 47 125 8.26e-13 70.5
Msa0277340 AT4G14300.1 56.614 189 80 1 2 188 4 192 2.36e-74 241
Msa0277340 AT4G14300.2 56.614 189 80 1 2 188 4 192 2.36e-74 241
Msa0277340 AT2G33410.1 55.026 189 83 1 2 188 4 192 1.67e-71 233
Msa0277340 AT1G58470.2 48.000 200 84 3 2 185 4 199 2.41e-52 182
Msa0277340 AT1G58470.1 48.000 200 84 3 2 185 4 199 2.41e-52 182
Msa0277340 AT1G17640.2 48.087 183 83 2 3 184 65 236 1.45e-51 180
Msa0277340 AT1G17640.1 48.087 183 83 2 3 184 65 236 1.45e-51 180
Msa0277340 AT1G17640.3 48.087 183 83 2 3 184 65 236 1.45e-51 180
Msa0277340 AT3G13224.2 41.121 214 105 4 3 214 18 212 3.99e-47 168
Msa0277340 AT3G13224.3 40.566 212 105 4 5 214 11 203 3.76e-45 162
Msa0277340 AT3G13224.3 48.750 80 40 1 105 184 9 87 6.40e-18 85.9
Msa0277340 AT3G13224.1 44.512 164 79 1 3 166 18 169 1.85e-44 157
Msa0277340 AT3G13224.1 50.000 78 38 1 107 184 20 96 1.14e-17 82.8
Msa0277340 AT5G40490.1 43.407 182 88 2 4 184 42 209 1.03e-43 160
Msa0277340 AT5G40490.2 44.512 164 76 2 22 184 43 192 4.80e-39 147
Msa0277340 AT5G40490.2 33.333 102 67 1 83 184 2 102 1.22e-12 70.1
Msa0277340 AT5G40490.2 36.905 84 51 1 5 86 114 197 1.75e-11 66.6
Msa0277340 AT4G36960.1 38.830 188 98 4 5 190 4 176 3.46e-37 141
Msa0277340 AT4G36960.2 38.830 188 98 4 5 190 4 176 3.46e-37 141
Msa0277340 AT1G33470.2 34.839 155 83 5 5 157 8 146 9.91e-21 92.0
Msa0277340 AT1G33470.2 35.106 94 58 1 107 197 8 101 8.06e-11 62.8
Msa0277340 AT1G33470.3 35.526 152 80 5 5 154 8 143 1.12e-20 91.7
Msa0277340 AT1G33470.3 35.106 94 58 1 107 197 8 101 8.59e-11 62.8
Msa0277340 AT1G33470.1 34.839 155 83 5 5 157 8 146 1.13e-20 91.7
Msa0277340 AT1G33470.1 35.106 94 58 1 107 197 8 101 8.39e-11 62.8
Msa0277340 AT1G76460.1 42.667 75 42 1 5 78 25 99 7.03e-18 84.3
Msa0277340 AT1G20880.2 42.667 75 42 1 5 78 25 99 9.77e-18 84.0
Msa0277340 AT1G20880.3 42.667 75 42 1 5 78 25 99 9.77e-18 84.0
Msa0277340 AT1G20880.1 42.667 75 42 1 5 78 25 99 9.77e-18 84.0
Msa0277340 AT1G22330.1 45.333 75 40 1 5 78 18 92 1.57e-17 83.6
Msa0277340 AT2G46780.1 39.091 110 54 3 5 102 23 131 2.75e-17 83.6
Msa0277340 AT2G46780.2 39.091 110 54 3 5 102 23 131 2.75e-17 83.6
Msa0277340 AT1G78260.1 47.059 68 35 1 5 71 18 85 3.19e-17 82.8
Msa0277340 AT1G78260.2 44.000 75 41 1 5 78 18 92 7.77e-17 81.3
Msa0277340 AT4G24770.1 29.592 196 119 5 2 193 148 328 1.22e-16 81.6
Msa0277340 AT4G24770.2 29.592 196 119 5 2 193 148 328 1.22e-16 81.6
Msa0277340 AT2G37220.1 29.319 191 119 5 5 181 92 280 1.54e-16 80.5
Msa0277340 AT3G52380.1 33.514 185 102 7 2 177 114 286 1.58e-16 81.3
Msa0277340 AT3G15010.1 29.050 179 115 3 5 182 76 243 3.12e-16 81.3
Msa0277340 AT3G15010.2 29.050 179 115 3 5 182 76 243 3.12e-16 81.3
Msa0277340 AT2G41060.1 26.437 174 108 3 5 168 129 292 8.12e-16 80.1
Msa0277340 AT2G41060.3 26.437 174 108 3 5 168 129 292 8.12e-16 80.1
Msa0277340 AT2G41060.2 26.437 174 108 3 5 168 129 292 8.12e-16 80.1
Msa0277340 AT3G23830.2 43.038 79 43 1 5 81 36 114 1.07e-15 74.3
Msa0277340 AT3G23830.2 34.884 86 55 1 107 191 36 121 7.88e-12 63.5
Msa0277340 AT3G23830.1 43.038 79 43 1 5 81 36 114 1.07e-15 74.3
Msa0277340 AT3G23830.1 34.884 86 55 1 107 191 36 121 7.88e-12 63.5
Msa0277340 AT4G16280.3 29.592 196 114 6 5 192 121 300 1.74e-15 79.7
Msa0277340 AT4G16280.4 29.592 196 114 6 5 192 46 225 1.74e-15 80.1
Msa0277340 AT4G16280.2 29.592 196 114 6 5 192 121 300 1.82e-15 80.1
Msa0277340 AT4G13850.4 46.835 79 40 1 5 81 36 114 2.81e-15 73.2
Msa0277340 AT4G13850.3 46.835 79 40 1 5 81 36 114 4.25e-15 72.8
Msa0277340 AT4G13850.2 46.835 79 40 1 5 81 36 114 5.27e-15 72.8
Msa0277340 AT4G13850.1 46.835 79 40 1 5 81 36 114 5.93e-15 72.8
Msa0277340 AT4G39260.3 39.241 79 46 1 5 81 7 85 9.09e-15 70.5
Msa0277340 AT4G39260.3 35.165 91 52 3 107 197 7 90 4.00e-11 60.1
Msa0277340 AT1G22910.1 36.000 75 47 1 5 78 14 88 1.63e-14 73.9
Msa0277340 AT1G22910.2 36.000 75 47 1 5 78 14 88 1.66e-14 73.6
Msa0277340 AT3G56860.9 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT3G56860.11 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT3G56860.8 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT3G56860.5 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT3G56860.7 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT3G56860.2 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT3G56860.6 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT3G56860.10 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT3G56860.3 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT3G56860.1 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT3G56860.4 23.232 198 136 4 5 194 141 330 3.92e-14 75.1
Msa0277340 AT2G36660.1 28.824 170 108 6 6 169 203 365 4.20e-14 75.5
Msa0277340 AT4G39260.2 39.474 76 44 1 5 78 7 82 5.69e-14 69.3
Msa0277340 AT1G22910.3 36.000 75 47 1 5 78 14 88 8.18e-14 73.2
Msa0277340 AT5G11412.1 42.667 75 42 1 5 78 53 127 9.77e-14 70.1
Msa0277340 AT3G54770.3 38.667 75 45 1 5 78 18 92 1.31e-13 71.6
Msa0277340 AT4G39260.1 39.474 76 44 1 5 78 7 82 1.56e-13 69.3
Msa0277340 AT3G52150.2 27.979 193 120 5 1 181 68 253 2.10e-13 70.9
Msa0277340 AT3G52150.1 27.979 193 120 5 1 181 68 253 2.10e-13 70.9
Msa0277340 AT3G54770.1 38.667 75 45 1 5 78 18 92 2.11e-13 70.9
Msa0277340 AT4G34110.1 28.249 177 117 5 6 179 217 386 2.62e-13 72.8
Msa0277340 AT1G60650.2 44.304 79 43 1 107 184 13 91 3.13e-13 70.9
Msa0277340 AT1G60650.1 44.304 79 43 1 107 184 13 91 3.13e-13 70.9
Msa0277340 AT5G61030.2 40.789 76 42 1 1 76 37 109 4.49e-13 70.5
Msa0277340 AT5G61030.1 40.789 76 42 1 1 76 37 109 4.49e-13 70.5
Msa0277340 AT5G50250.1 27.869 183 119 4 2 181 111 283 5.17e-13 70.1
Msa0277340 AT5G50250.1 31.788 151 98 3 93 241 100 247 6.93e-11 63.5
Msa0277340 AT2G23350.1 28.977 176 111 5 6 176 227 393 6.09e-13 72.0
Msa0277340 AT5G06210.1 46.479 71 36 1 5 73 35 105 6.78e-13 66.6
Msa0277340 AT4G39260.4 43.333 60 34 0 5 64 7 66 7.74e-13 65.5
Msa0277340 AT4G00830.2 26.596 188 105 7 5 184 117 279 1.10e-12 70.9
Msa0277340 AT4G00830.1 26.596 188 105 7 5 184 117 279 1.10e-12 70.9
Msa0277340 AT4G00830.6 26.596 188 105 7 5 184 117 279 1.10e-12 70.9
Msa0277340 AT4G27000.1 29.268 164 103 4 6 164 175 330 1.25e-12 70.1
Msa0277340 AT4G13860.1 41.892 74 41 1 5 76 4 77 1.60e-12 63.9
Msa0277340 AT4G00830.4 27.957 186 105 7 5 184 117 279 1.68e-12 70.1
Msa0277340 AT1G60000.1 25.967 181 117 4 5 181 86 253 1.77e-12 68.2
Msa0277340 AT3G26420.1 36.170 94 56 2 5 96 8 99 1.84e-12 67.8
Msa0277340 AT5G59865.1 32.911 79 51 1 5 81 27 105 2.11e-12 64.3
Msa0277340 AT2G21660.2 38.158 76 45 1 5 78 9 84 2.85e-12 65.1
Msa0277340 AT2G21660.1 38.158 76 45 1 5 78 9 84 4.15e-12 65.1
Msa0277340 AT5G04280.1 37.975 79 48 1 107 184 8 86 4.20e-12 67.8
Msa0277340 AT5G04280.1 35.789 95 54 2 5 97 8 97 5.89e-12 67.4
Msa0277340 AT1G71770.1 29.050 179 107 9 6 176 241 407 6.43e-12 68.6
Msa0277340 AT1G71770.2 29.050 179 107 9 6 176 241 407 6.43e-12 68.6
Msa0277340 AT4G00830.3 27.419 186 98 6 5 184 117 271 1.10e-11 67.4
Msa0277340 AT4G00830.5 27.419 186 98 6 5 184 117 271 1.10e-11 67.4
Msa0277340 AT3G16380.1 26.064 188 131 6 2 185 200 383 1.15e-11 67.8
Msa0277340 AT3G16380.1 25.137 183 119 5 6 185 114 281 3.71e-11 65.9
Msa0277340 AT5G53720.1 41.333 75 43 1 5 78 10 84 1.50e-11 61.6
Msa0277340 AT5G54900.1 29.586 169 97 7 6 164 156 312 2.23e-11 66.2
Msa0277340 AT5G54900.1 25.128 195 130 6 2 195 58 237 3.98e-11 65.5
Msa0277340 AT1G18630.1 38.667 75 44 1 1 73 33 107 2.28e-11 62.4
Msa0277340 AT3G06970.1 40.000 75 44 1 5 78 13 87 3.00e-11 65.1
Msa0277340 AT1G74230.1 40.260 77 42 1 1 77 31 103 3.65e-11 64.7
Msa0277340 AT1G01080.1 25.789 190 127 4 3 184 107 290 5.08e-11 64.3
Msa0277340 AT1G49760.1 27.374 179 116 5 6 179 226 395 7.23e-11 65.5
Msa0277340 AT1G49760.2 27.374 179 116 5 6 179 226 395 7.23e-11 65.5
Msa0277340 AT2G18510.1 27.174 184 113 5 6 185 27 193 9.93e-11 63.9

Find 138 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTGATTTGTTGAATTTA+TGG 0.107746 2_3:+9852658 None:intergenic
TACAAGGGATTTACTATATA+AGG 0.163431 2_3:-9851369 Msa0277340:three_prime_UTR
ATTGGTTCATTTGGAAATAT+TGG 0.185824 2_3:-9852551 Msa0277340:CDS
TCACGAACTTAATGGTAAAA+TGG 0.231963 2_3:-9853071 Msa0277340:CDS
GTAAAAGCAGTCTTAATTAT+AGG 0.247091 2_3:-9852466 Msa0277340:CDS
TTGAGTTGAGTGTGAATTAT+AGG 0.247263 2_3:-9851345 Msa0277340:three_prime_UTR
GCTTTCTCAAATGGCAATTA+TGG 0.252580 2_3:-9852362 Msa0277340:CDS
CAAGTATGGTCTTGATAAAA+TGG 0.260964 2_3:+9852308 None:intergenic
ACGGGACGTGCTCGTGGTTT+TGG 0.261674 2_3:-9854109 Msa0277340:CDS
AATTCAAGTATTGGTTCATT+TGG 0.263527 2_3:-9852560 Msa0277340:CDS
GCAAGCTCTGATGCTTTCTT+AGG 0.264487 2_3:-9852596 Msa0277340:CDS
TTCAAACTGTTATTCCTCTT+TGG 0.270502 2_3:-9851208 Msa0277340:three_prime_UTR
TATTCATTGGAGGGATTTCC+TGG 0.271367 2_3:-9854213 Msa0277340:CDS
ACTCAACGTCCTAGAGGTTT+TGG 0.280151 2_3:-9853148 Msa0277340:CDS
GATTCTGGTCCTCTTAGTTT+TGG 0.283274 2_3:-9852260 Msa0277340:CDS
GGGTCAAAAGCGGTAGGTTA+TGG 0.288227 2_3:-9852425 Msa0277340:CDS
ATAAATATGTATATATATAA+TGG 0.307969 2_3:+9854918 None:intergenic
CATCTGGGTTTGTCTTCATT+TGG 0.315361 2_3:-9854781 Msa0277340:intron
ACTTCAGAATTAGAGGATTC+TGG 0.318320 2_3:-9852275 Msa0277340:CDS
GTGAAAGTGCAGGGTGGATA+TGG 0.332897 2_3:-9854248 Msa0277340:intron
GTAAAATGGTTGAGGTTAAG+AGG 0.336119 2_3:-9853057 Msa0277340:CDS
AAGAATTACTTTGATCAATT+CGG 0.342885 2_3:-9853208 Msa0277340:CDS
GCTCTAGTGGTGGCCACATT+GGG 0.352710 2_3:-9852202 Msa0277340:CDS
GGACTTGGAGATAAATCCTT+TGG 0.354791 2_3:+9853028 None:intergenic
ATCAACAACTTCAGAATTAG+AGG 0.355605 2_3:-9852282 Msa0277340:CDS
TGTTGCCGAACGCGTTGTTA+TGG 0.356640 2_3:-9854062 Msa0277340:CDS
ACTAATCAAGCTGGAACTAT+TGG 0.362493 2_3:-9852500 Msa0277340:CDS
TATCATTGAAATGTTCATCT+AGG 0.374382 2_3:-9851080 Msa0277340:three_prime_UTR
CTTCACTTCTAACTTTATCA+TGG 0.381164 2_3:-9852774 Msa0277340:CDS
AAGAAAGCATCAGAGCTTGC+AGG 0.383788 2_3:+9852599 None:intergenic
ACAAGGGATTTACTATATAA+GGG 0.384052 2_3:-9851368 Msa0277340:three_prime_UTR
TCGTTAGAGCCAATTGGATT+TGG 0.391620 2_3:-9851425 Msa0277340:CDS
AAAATTTCGTTAGAGCCAAT+TGG 0.396835 2_3:-9851431 Msa0277340:CDS
GGAACTATTGGCTCTGGTTA+TGG 0.399080 2_3:-9852488 Msa0277340:CDS
GGAAGTGAAAATTCAAGTAT+TGG 0.406692 2_3:-9852569 Msa0277340:CDS
GACTTGGAGATAAATCCTTT+GGG 0.412330 2_3:+9853029 None:intergenic
TTGGAAATATTGGATCGCTT+TGG 0.415441 2_3:-9852541 Msa0277340:CDS
AGCAGTCTTAATTATAGGCT+TGG 0.418041 2_3:-9852461 Msa0277340:CDS
TCATCGTCCGCTTTCTCAAA+TGG 0.418816 2_3:-9852371 Msa0277340:CDS
CCACCTAGCTGACCTCTACT+TGG 0.422780 2_3:+9853007 None:intergenic
AATCAGAGTTTGTGGGGTAA+TGG 0.426835 2_3:-9852644 Msa0277340:CDS
TAAGTCCATGTCCTCCAATC+AGG 0.431180 2_3:+9852915 None:intergenic
AGCTCTAGTGGTGGCCACAT+TGG 0.433128 2_3:-9852203 Msa0277340:CDS
ACCATGTTGCTAGTCTTGGC+TGG 0.436916 2_3:-9851171 Msa0277340:three_prime_UTR
TTGGACCATGTTGCTAGTCT+TGG 0.444588 2_3:-9851175 Msa0277340:three_prime_UTR
AATAGTTCCAGCTTGATTAG+TGG 0.446759 2_3:+9852502 None:intergenic
ATTCAACAAATCAGAGTTTG+TGG 0.447295 2_3:-9852652 Msa0277340:CDS
TCTGATGCTTTCTTAGGTTA+CGG 0.449952 2_3:-9852590 Msa0277340:CDS
TTCACTTCTAACTTTATCAT+GGG 0.456159 2_3:-9852773 Msa0277340:CDS
CTGCTCGGACTTGCACTGTA+TGG 0.468509 2_3:+9852734 None:intergenic
TCAACACTGCCAAATCCAAT+TGG 0.469168 2_3:+9851416 None:intergenic
GGATATAATCCAAGCCTGAT+TGG 0.471574 2_3:-9852929 Msa0277340:CDS
AAGTTGTTGATCTCCAAGTA+TGG 0.472206 2_3:+9852294 None:intergenic
TTCAGTCCTAGTTATGGGAC+AGG 0.482898 2_3:-9852839 Msa0277340:CDS
GACCCGGGGAAGCTATTCAT+TGG 0.483289 2_3:-9854226 Msa0277340:CDS
TTGAGTCCTGTCCCATAACT+AGG 0.486555 2_3:+9852833 None:intergenic
TACTTCAGGAATTGCTGCTT+AGG 0.486807 2_3:-9851550 Msa0277340:intron
CAGCTAGGTGGATTTAGTTA+CGG 0.489503 2_3:-9852995 Msa0277340:CDS
CCTCCAATGAATAGCTTCCC+CGG 0.490387 2_3:+9854223 None:intergenic
ATAAAATGGCCCAGCTTCAA+AGG 0.491559 2_3:+9852322 None:intergenic
CAAGCTGGAACTATTGGCTC+TGG 0.492504 2_3:-9852494 Msa0277340:CDS
CTTGTAATCAAGTTATATGA+TGG 0.496916 2_3:-9851298 Msa0277340:three_prime_UTR
TCGGTCTTCATTTGTATCCC+AGG 0.498427 2_3:+9854195 None:intergenic
CAAATACACAGAGACTTACA+AGG 0.503790 2_3:-9851385 Msa0277340:three_prime_UTR
CCTCTTTGGACAAGTAGAGT+TGG 0.505174 2_3:-9851194 Msa0277340:three_prime_UTR
CCACTACGGCCAACATTAGC+AGG 0.505272 2_3:+9852872 None:intergenic
CCTGCTAATGTTGGCCGTAG+TGG 0.506110 2_3:-9852872 Msa0277340:CDS
TGTTGCTAGTCTTGGCTGGT+TGG 0.510056 2_3:-9851167 Msa0277340:three_prime_UTR
ACTTAATGGTAAAATGGTTG+AGG 0.511412 2_3:-9853065 Msa0277340:CDS
CCATGTCCTCCAATCAGGCT+TGG 0.512206 2_3:+9852920 None:intergenic
TGCAGGGTGGATATGGACCC+GGG 0.512751 2_3:-9854241 Msa0277340:intron
CCAAGCCTGATTGGAGGACA+TGG 0.513321 2_3:-9852920 Msa0277340:CDS
TTTGCGCATTAAATCTGAAA+CGG 0.516756 2_3:+9852226 None:intergenic
ATTTATCTTCTTTCAATCAA+CGG 0.528092 2_3:-9854901 Msa0277340:five_prime_UTR
GAAGAAAGAGAGAGGGCGAA+AGG 0.528675 2_3:+9854844 None:intergenic
ATAATGAAGGATCGGACCAC+GGG 0.531988 2_3:-9854127 Msa0277340:CDS
TTCAACAAATCAGAGTTTGT+GGG 0.532385 2_3:-9852651 Msa0277340:CDS
AACACATTCTGATCATCTCT+AGG 0.536849 2_3:+9853337 None:intergenic
TCAGGAATTGCTGCTTAGGA+AGG 0.547622 2_3:-9851546 Msa0277340:intron
AGAAGCAACAGCAGCAGTCA+TGG 0.547797 2_3:-9853310 Msa0277340:CDS
TACGGTACTATGAGTAGAGT+TGG 0.549591 2_3:-9852977 Msa0277340:CDS
TATGCTGCTGGTTCAAATGT+TGG 0.552503 2_3:-9852692 Msa0277340:CDS
GTGATGAATCCAAAACCTCT+AGG 0.559445 2_3:+9853139 None:intergenic
AGCTGACCTCTACTTGGACT+TGG 0.561555 2_3:+9853013 None:intergenic
GTTTCGAAGGTGAATGAATG+TGG 0.562363 2_3:-9851497 Msa0277340:CDS
CGGGGAAGCTATTCATTGGA+GGG 0.568890 2_3:-9854222 Msa0277340:CDS
TAAAATGGTTGAGGTTAAGA+GGG 0.571339 2_3:-9853056 Msa0277340:CDS
TCTGAAAATACTGTCTGAGT+CGG 0.573282 2_3:+9854176 None:intergenic
CTCCAATGAATAGCTTCCCC+GGG 0.574486 2_3:+9854224 None:intergenic
ACAACGCGTTCGGCAACAGA+AGG 0.576203 2_3:+9854067 None:intergenic
GTTGGTACCACTAATCAAGC+TGG 0.576360 2_3:-9852509 Msa0277340:CDS
AGTCCAAGTAGAGGTCAGCT+AGG 0.576395 2_3:-9853010 Msa0277340:CDS
AAAAGAAAATAAAAGGGAGA+AGG 0.578745 2_3:+9851253 None:intergenic
CATACAGTGCAAGTCCGAGC+AGG 0.583910 2_3:-9852733 Msa0277340:CDS
ATAATTGCCATTTGAGAAAG+CGG 0.584456 2_3:+9852364 None:intergenic
AATGCCATGGCATATGCTGC+TGG 0.585801 2_3:-9852704 Msa0277340:CDS
GTGCGTATAGGAGTAGGAGC+AGG 0.586075 2_3:+9853283 None:intergenic
GTGCAGGGTGGATATGGACC+CGG 0.587912 2_3:-9854242 Msa0277340:intron
ATTCATTGGAGGGATTTCCT+GGG 0.590560 2_3:-9854212 Msa0277340:CDS
ACACATTCTGATCATCTCTA+GGG 0.591583 2_3:+9853338 None:intergenic
GATGCTAGCTTGTGTTTCGA+AGG 0.591604 2_3:-9851510 Msa0277340:CDS
GGTTAAGAGGGCTGTCCCAA+AGG 0.591792 2_3:-9853044 Msa0277340:CDS
CCGGGGAAGCTATTCATTGG+AGG 0.593790 2_3:-9854223 Msa0277340:CDS
ATGGCATTATTGTACCTGCT+CGG 0.594390 2_3:+9852719 None:intergenic
GGACATGGACTTAGATTAGA+CGG 0.596148 2_3:-9852905 Msa0277340:CDS
AGATTGAGTCCTGCTAATGT+TGG 0.596495 2_3:-9852881 Msa0277340:CDS
ATTCATCACATATGATTCTG+AGG 0.596540 2_3:-9853125 Msa0277340:CDS
CGGACCACGGGACGTGCTCG+TGG 0.598613 2_3:-9854115 Msa0277340:CDS
TCGCTTTGGAGTACCTCTGT+TGG 0.598671 2_3:-9852527 Msa0277340:CDS
TATAATCCAAGCCTGATTGG+AGG 0.599267 2_3:-9852926 Msa0277340:CDS
CTCAAATGGCAATTATGGCG+AGG 0.603967 2_3:-9852357 Msa0277340:CDS
AAGCTGTGATAATGAAGGAT+CGG 0.604188 2_3:-9854135 Msa0277340:CDS
AGCATAAGAAGAAAGAGAGA+GGG 0.604499 2_3:+9854837 None:intergenic
TCAACAAATCAGAGTTTGTG+GGG 0.606068 2_3:-9852650 Msa0277340:CDS
AGAAAGCATCAGAGCTTGCA+GGG 0.614536 2_3:+9852600 None:intergenic
TTGTCTATTAGCAACAGCAT+AGG 0.615183 2_3:+9852178 None:intergenic
TTAATGCGCAAAAGCTCTAG+TGG 0.619120 2_3:-9852215 Msa0277340:CDS
ACACAAGCTAGCATCATACA+TGG 0.623502 2_3:+9851518 None:intergenic
CCAAGTAGAGGTCAGCTAGG+TGG 0.624464 2_3:-9853007 Msa0277340:CDS
AAGCATAAGAAGAAAGAGAG+AGG 0.633966 2_3:+9854836 None:intergenic
AAAACCACGAGCACGTCCCG+TGG 0.635104 2_3:+9854111 None:intergenic
CCAACTCTACTTGTCCAAAG+AGG 0.637536 2_3:+9851194 None:intergenic
CTCTAGTGGTGGCCACATTG+GGG 0.638379 2_3:-9852201 Msa0277340:CDS
AAAATCACTCTCAGTAACTG+TGG 0.644212 2_3:+9853231 None:intergenic
TGAACCAGCAGCATATGCCA+TGG 0.649924 2_3:+9852700 None:intergenic
AGTTGAAGCTGTGATAATGA+AGG 0.651982 2_3:-9854140 Msa0277340:CDS
GATAATGAAGGATCGGACCA+CGG 0.652237 2_3:-9854128 Msa0277340:CDS
CATAACACTCAACGTCCTAG+AGG 0.655325 2_3:-9853154 Msa0277340:CDS
TTGATTAGTGGTACCAACAG+AGG 0.658357 2_3:+9852514 None:intergenic
TTATCTCCAAGTCCAAGTAG+AGG 0.662062 2_3:-9853019 Msa0277340:CDS
ACCAGCCAAGACTAGCAACA+TGG 0.663647 2_3:+9851170 None:intergenic
TGAAAAGAGAATATCCACTA+CGG 0.670066 2_3:+9852858 None:intergenic
GAGCAGGTACAATAATGCCA+TGG 0.672280 2_3:-9852717 Msa0277340:CDS
ATGCGCAAAAGCTCTAGTGG+TGG 0.680889 2_3:-9852212 Msa0277340:CDS
TGTATGGAGAACTCAATGCA+CGG 0.691238 2_3:+9852750 None:intergenic
GCAGGGTGGATATGGACCCG+GGG 0.704621 2_3:-9854240 Msa0277340:intron
AAATACACAGAGACTTACAA+GGG 0.709229 2_3:-9851384 Msa0277340:three_prime_UTR
CAACAGCATAGGCCCCAATG+TGG 0.722323 2_3:+9852189 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCAATTTTGAATTAT+GGG - chr2_3:9851293-9851312 Msa0277340:three_prime_UTR 10.0%
!! GACATAATTATAAATAAAAA+GGG + chr2_3:9852581-9852600 None:intergenic 10.0%
!! AGACATAATTATAAATAAAA+AGG + chr2_3:9852582-9852601 None:intergenic 10.0%
!! AAAAACAAAAGAAAATAAAA+GGG + chr2_3:9854762-9854781 None:intergenic 10.0%
!! AAAAAACAAAAGAAAATAAA+AGG + chr2_3:9854763-9854782 None:intergenic 10.0%
!!! CTTTTTTCAATTTTGAATTA+TGG - chr2_3:9851292-9851311 Msa0277340:three_prime_UTR 15.0%
!! AAAACAAAATTTACTGAATT+GGG + chr2_3:9851347-9851366 None:intergenic 15.0%
!! AAAAACAAAATTTACTGAAT+TGG + chr2_3:9851348-9851367 None:intergenic 15.0%
!!! TTAGATTTTATACTTGATTA+TGG - chr2_3:9853928-9853947 Msa0277340:intron 15.0%
!! GTGAATAAAAAAGAAAAATA+TGG + chr2_3:9853988-9854007 None:intergenic 15.0%
!! ATTTATCTTCTTTCAATCAA+CGG - chr2_3:9851105-9851124 Msa0277340:three_prime_UTR 20.0%
!! TTGTTAGAGAAAAAATAAAG+AGG - chr2_3:9851138-9851157 Msa0277340:three_prime_UTR 20.0%
!! TGTTAGAGAAAAAATAAAGA+GGG - chr2_3:9851139-9851158 Msa0277340:three_prime_UTR 20.0%
!! TGTTTGAAAAAACATAGATT+TGG - chr2_3:9851403-9851422 Msa0277340:exon 20.0%
!! TTGATGAATTTAATGTTGTT+TGG - chr2_3:9851493-9851512 Msa0277340:CDS 20.0%
!!! TTAATGTTGTTTGGATTTAT+AGG - chr2_3:9851502-9851521 Msa0277340:CDS 20.0%
!!! GTTTGAAATAGAATTTTGAT+TGG - chr2_3:9851730-9851749 Msa0277340:intron 20.0%
!! GAAAAATACACATACAATAT+CGG - chr2_3:9852143-9852162 Msa0277340:intron 20.0%
!! AAGAATTACTTTGATCAATT+CGG - chr2_3:9852798-9852817 Msa0277340:CDS 20.0%
!!! TGAAGTTTTCATTTTCATTA+TGG + chr2_3:9853217-9853236 None:intergenic 20.0%
!! AATAATCAATCATATGGAAA+TGG + chr2_3:9854347-9854366 None:intergenic 20.0%
!!! TTCCATATGATTGATTATTT+TGG - chr2_3:9854348-9854367 Msa0277340:intron 20.0%
!! ATCCAAAATAATCAATCATA+TGG + chr2_3:9854353-9854372 None:intergenic 20.0%
!!! AATTATAGGTTTTCTTTCTT+TGG - chr2_3:9854675-9854694 Msa0277340:intron 20.0%
!!! ATTATAGGTTTTCTTTCTTT+GGG - chr2_3:9854676-9854695 Msa0277340:intron 20.0%
!! TTTCTTCAAATTTTCTCATC+TGG - chr2_3:9851209-9851228 Msa0277340:three_prime_UTR 25.0%
!! TTCTTCAAATTTTCTCATCT+GGG - chr2_3:9851210-9851229 Msa0277340:three_prime_UTR 25.0%
! TTGACAAAAGTCATACAATT+AGG + chr2_3:9851263-9851282 None:intergenic 25.0%
!!! GATGTTACTACTTTTAGTAT+TGG - chr2_3:9851631-9851650 Msa0277340:intron 25.0%
!! TTTATGGATGTGAGTTTTTA+TGG - chr2_3:9851708-9851727 Msa0277340:intron 25.0%
! GATTTAATATTGCAAGTTCA+TGG - chr2_3:9852249-9852268 Msa0277340:CDS 25.0%
! AGAAACACAAATAATGTACT+TGG + chr2_3:9852521-9852540 None:intergenic 25.0%
! AAAGGGAATTATAGAAATCA+AGG + chr2_3:9852564-9852583 None:intergenic 25.0%
!!! AATATCTTTTTTGTGCGTAT+AGG + chr2_3:9852738-9852757 None:intergenic 25.0%
!! ACAAAAAAGATATTTGTTGG+AGG - chr2_3:9852744-9852763 Msa0277340:CDS 25.0%
!! AAAACTTTTCACGAACTTAA+TGG - chr2_3:9852927-9852946 Msa0277340:CDS 25.0%
!! TCATTTTCATTATGGTTCAA+TGG + chr2_3:9853209-9853228 None:intergenic 25.0%
! TTCACTTCTAACTTTATCAT+GGG - chr2_3:9853233-9853252 Msa0277340:CDS 25.0%
!!! ACTCTGATTTGTTGAATTTA+TGG + chr2_3:9853351-9853370 None:intergenic 25.0%
!!! AATTCAAGTATTGGTTCATT+TGG - chr2_3:9853446-9853465 Msa0277340:intron 25.0%
!! ATTGGTTCATTTGGAAATAT+TGG - chr2_3:9853455-9853474 Msa0277340:intron 25.0%
! GTAAAAGCAGTCTTAATTAT+AGG - chr2_3:9853540-9853559 Msa0277340:intron 25.0%
!!! TATAAAAATACCTTTGAAGC+TGG - chr2_3:9853674-9853693 Msa0277340:intron 25.0%
!!! ATAAAAATACCTTTGAAGCT+GGG - chr2_3:9853675-9853694 Msa0277340:intron 25.0%
! TTTACTTGAATCAGAAAGTA+TGG - chr2_3:9854390-9854409 Msa0277340:intron 25.0%
! TACAAGGGATTTACTATATA+AGG - chr2_3:9854637-9854656 Msa0277340:intron 25.0%
! ACAAGGGATTTACTATATAA+GGG - chr2_3:9854638-9854657 Msa0277340:intron 25.0%
! CTTGTAATCAAGTTATATGA+TGG - chr2_3:9854708-9854727 Msa0277340:intron 25.0%
! AAAAGAAAATAAAAGGGAGA+AGG + chr2_3:9854756-9854775 None:intergenic 25.0%
! TATCATTGAAATGTTCATCT+AGG - chr2_3:9854926-9854945 Msa0277340:five_prime_UTR 25.0%
!! ATGAATCAGCTAACATTTTA+AGG + chr2_3:9854954-9854973 None:intergenic 25.0%
ATTTATAGGACATAGATACG+AGG - chr2_3:9851516-9851535 Msa0277340:CDS 30.0%
ACAAAAACATCTGACATCAT+CGG + chr2_3:9851595-9851614 None:intergenic 30.0%
!! TGGTTTGTTTCAATGATTGT+TGG - chr2_3:9851651-9851670 Msa0277340:intron 30.0%
! AGACAGTATTTTCAGAACTT+TGG - chr2_3:9851837-9851856 Msa0277340:intron 30.0%
ATGGAAAAACATGTCATAGA+TGG - chr2_3:9851963-9851982 Msa0277340:intron 30.0%
AAGCAATTGTAAAGTGTAGT+TGG - chr2_3:9852309-9852328 Msa0277340:CDS 30.0%
AATTGATGCTTGAGATGTTA+AGG - chr2_3:9852357-9852376 Msa0277340:CDS 30.0%
! ATCAGAATTATTTAGAGCAC+TGG + chr2_3:9852457-9852476 None:intergenic 30.0%
CTAAATAATTCTGATCTGCT+AGG - chr2_3:9852462-9852481 Msa0277340:CDS 30.0%
CGCACAAAAAAGATATTTGT+TGG - chr2_3:9852741-9852760 Msa0277340:CDS 30.0%
ATTCATCACATATGATTCTG+AGG - chr2_3:9852881-9852900 Msa0277340:CDS 30.0%
TCACGAACTTAATGGTAAAA+TGG - chr2_3:9852935-9852954 Msa0277340:CDS 30.0%
ACTTAATGGTAAAATGGTTG+AGG - chr2_3:9852941-9852960 Msa0277340:CDS 30.0%
TAAAATGGTTGAGGTTAAGA+GGG - chr2_3:9852950-9852969 Msa0277340:CDS 30.0%
!!! AGAGTTGGTAGTTTTTCTAA+TGG - chr2_3:9853044-9853063 Msa0277340:CDS 30.0%
!! TTTTTCTAATGGTTTTGCTC+AGG - chr2_3:9853055-9853074 Msa0277340:CDS 30.0%
!! TTTTCTAATGGTTTTGCTCA+GGG - chr2_3:9853056-9853075 Msa0277340:CDS 30.0%
TGAAAAGAGAATATCCACTA+CGG + chr2_3:9853151-9853170 None:intergenic 30.0%
! TTTTCATTATGGTTCAATGG+TGG + chr2_3:9853206-9853225 None:intergenic 30.0%
CTTCACTTCTAACTTTATCA+TGG - chr2_3:9853232-9853251 Msa0277340:CDS 30.0%
ATTCAACAAATCAGAGTTTG+TGG - chr2_3:9853354-9853373 Msa0277340:CDS 30.0%
TTCAACAAATCAGAGTTTGT+GGG - chr2_3:9853355-9853374 Msa0277340:CDS 30.0%
GGAAGTGAAAATTCAAGTAT+TGG - chr2_3:9853437-9853456 Msa0277340:intron 30.0%
! ATAATTGCCATTTGAGAAAG+CGG + chr2_3:9853645-9853664 None:intergenic 30.0%
! CAAGTATGGTCTTGATAAAA+TGG + chr2_3:9853701-9853720 None:intergenic 30.0%
! CATTTTATCAAGACCATACT+TGG - chr2_3:9853699-9853718 Msa0277340:intron 30.0%
ATCAACAACTTCAGAATTAG+AGG - chr2_3:9853724-9853743 Msa0277340:intron 30.0%
TTTGCGCATTAAATCTGAAA+CGG + chr2_3:9853783-9853802 None:intergenic 30.0%
!! GTATCATTTTTCCAAAATGC+TGG - chr2_3:9854099-9854118 Msa0277340:CDS 30.0%
CATGGCTAGAATTTATTCAT+TGG + chr2_3:9854126-9854145 None:intergenic 30.0%
CTCAAATTATGGTCATAACA+TGG + chr2_3:9854144-9854163 None:intergenic 30.0%
AGATACACCTTACTATGAAA+AGG - chr2_3:9854270-9854289 Msa0277340:intron 30.0%
GATACACCTTACTATGAAAA+GGG - chr2_3:9854271-9854290 Msa0277340:intron 30.0%
ATACACCTTACTATGAAAAG+GGG - chr2_3:9854272-9854291 Msa0277340:intron 30.0%
! TTTTGACCATGTTTTACTTC+AGG - chr2_3:9854442-9854461 Msa0277340:intron 30.0%
AAAATTTCGTTAGAGCCAAT+TGG - chr2_3:9854575-9854594 Msa0277340:intron 30.0%
AAATACACAGAGACTTACAA+GGG - chr2_3:9854622-9854641 Msa0277340:intron 30.0%
!! TTGAGTTGAGTGTGAATTAT+AGG - chr2_3:9854661-9854680 Msa0277340:intron 30.0%
TTCAAACTGTTATTCCTCTT+TGG - chr2_3:9854798-9854817 Msa0277340:five_prime_UTR 30.0%
AGCATAAGAAGAAAGAGAGA+GGG + chr2_3:9851172-9851191 None:intergenic 35.0%
AAGCATAAGAAGAAAGAGAG+AGG + chr2_3:9851173-9851192 None:intergenic 35.0%
GTATCATGTGTGTAACTGAT+TGG - chr2_3:9851560-9851579 Msa0277340:intron 35.0%
GTGTGTAACTGATTGGAATT+TGG - chr2_3:9851567-9851586 Msa0277340:intron 35.0%
! ATTGGATTATGTGAAAGTGC+AGG - chr2_3:9851748-9851767 Msa0277340:intron 35.0%
! TTGGATTATGTGAAAGTGCA+GGG - chr2_3:9851749-9851768 Msa0277340:intron 35.0%
TCTGAAAATACTGTCTGAGT+CGG + chr2_3:9851833-9851852 None:intergenic 35.0%
! AGTTGAAGCTGTGATAATGA+AGG - chr2_3:9851866-9851885 Msa0277340:intron 35.0%
! AAGCTGTGATAATGAAGGAT+CGG - chr2_3:9851871-9851890 Msa0277340:intron 35.0%
! TTTTTCCATAACAACGCGTT+CGG + chr2_3:9851952-9851971 None:intergenic 35.0%
! CAACTTCAGTTTAGAACAAG+AGG - chr2_3:9852116-9852135 Msa0277340:intron 35.0%
TTGTCATGCATTTAACATGC+AGG - chr2_3:9852626-9852645 Msa0277340:CDS 35.0%
ACACATTCTGATCATCTCTA+GGG + chr2_3:9852671-9852690 None:intergenic 35.0%
AACACATTCTGATCATCTCT+AGG + chr2_3:9852672-9852691 None:intergenic 35.0%
!!! TTTTTTGTGCGTATAGGAGT+AGG + chr2_3:9852732-9852751 None:intergenic 35.0%
AAAATCACTCTCAGTAACTG+TGG + chr2_3:9852778-9852797 None:intergenic 35.0%
GTAAAATGGTTGAGGTTAAG+AGG - chr2_3:9852949-9852968 Msa0277340:CDS 35.0%
GACTTGGAGATAAATCCTTT+GGG + chr2_3:9852980-9852999 None:intergenic 35.0%
! TCTCTTTTCAGTCCTAGTTA+TGG - chr2_3:9853161-9853180 Msa0277340:CDS 35.0%
! CTCTTTTCAGTCCTAGTTAT+GGG - chr2_3:9853162-9853181 Msa0277340:CDS 35.0%
TCAACAAATCAGAGTTTGTG+GGG - chr2_3:9853356-9853375 Msa0277340:CDS 35.0%
TCTGATGCTTTCTTAGGTTA+CGG - chr2_3:9853416-9853435 Msa0277340:intron 35.0%
TTGGAAATATTGGATCGCTT+TGG - chr2_3:9853465-9853484 Msa0277340:intron 35.0%
AATAGTTCCAGCTTGATTAG+TGG + chr2_3:9853507-9853526 None:intergenic 35.0%
ACTAATCAAGCTGGAACTAT+TGG - chr2_3:9853506-9853525 Msa0277340:intron 35.0%
AGCAGTCTTAATTATAGGCT+TGG - chr2_3:9853545-9853564 Msa0277340:intron 35.0%
!!! TGTGATTTTAGGGTCAAAAG+CGG - chr2_3:9853571-9853590 Msa0277340:intron 35.0%
GCTTTCTCAAATGGCAATTA+TGG - chr2_3:9853644-9853663 Msa0277340:intron 35.0%
AAGTTGTTGATCTCCAAGTA+TGG + chr2_3:9853715-9853734 None:intergenic 35.0%
ACTTCAGAATTAGAGGATTC+TGG - chr2_3:9853731-9853750 Msa0277340:intron 35.0%
!! TTTTCAAGGCCAAAACTAAG+AGG + chr2_3:9853758-9853777 None:intergenic 35.0%
!! AATCTGAAACGGCATTTTCA+AGG + chr2_3:9853772-9853791 None:intergenic 35.0%
TTGTCTATTAGCAACAGCAT+AGG + chr2_3:9853831-9853850 None:intergenic 35.0%
GCTAATAGACAATCAAACAG+AGG - chr2_3:9853839-9853858 Msa0277340:intron 35.0%
GTATTGTTGACAAGACTCTA+AGG + chr2_3:9854028-9854047 None:intergenic 35.0%
! TATTCATTGGACCAGCATTT+TGG + chr2_3:9854113-9854132 None:intergenic 35.0%
! TTTCTCCCCTTTTCATAGTA+AGG + chr2_3:9854280-9854299 None:intergenic 35.0%
GCAATTCCTGAAGTAAAACA+TGG + chr2_3:9854451-9854470 None:intergenic 35.0%
CAAATACACAGAGACTTACA+AGG - chr2_3:9854621-9854640 Msa0277340:intron 35.0%
CATCTGGGTTTGTCTTCATT+TGG - chr2_3:9851225-9851244 Msa0277340:three_prime_UTR 40.0%
!! ACTGAATTGGGCTAGTTAGA+TGG + chr2_3:9851335-9851354 None:intergenic 40.0%
TATTCATTGGAGGGATTTCC+TGG - chr2_3:9851793-9851812 Msa0277340:intron 40.0%
ATTCATTGGAGGGATTTCCT+GGG - chr2_3:9851794-9851813 Msa0277340:intron 40.0%
TTATGATTCATTGTCCCCCA+CGG - chr2_3:9852059-9852078 Msa0277340:intron 40.0%
TGCATCTCAATCATTTCCGT+GGG + chr2_3:9852078-9852097 None:intergenic 40.0%
ATGCATCTCAATCATTTCCG+TGG + chr2_3:9852079-9852098 None:intergenic 40.0%
GTTGGCATGAATGATAGCAA+TGG - chr2_3:9852327-9852346 Msa0277340:CDS 40.0%
GTGATGAATCCAAAACCTCT+AGG + chr2_3:9852870-9852889 None:intergenic 40.0%
GGACTTGGAGATAAATCCTT+TGG + chr2_3:9852981-9853000 None:intergenic 40.0%
TTATCTCCAAGTCCAAGTAG+AGG - chr2_3:9852987-9853006 Msa0277340:CDS 40.0%
! CAGCTAGGTGGATTTAGTTA+CGG - chr2_3:9853011-9853030 Msa0277340:CDS 40.0%
TACGGTACTATGAGTAGAGT+TGG - chr2_3:9853029-9853048 Msa0277340:CDS 40.0%
GGATATAATCCAAGCCTGAT+TGG - chr2_3:9853077-9853096 Msa0277340:CDS 40.0%
TATAATCCAAGCCTGATTGG+AGG - chr2_3:9853080-9853099 Msa0277340:CDS 40.0%
GGACATGGACTTAGATTAGA+CGG - chr2_3:9853101-9853120 Msa0277340:CDS 40.0%
AGATTGAGTCCTGCTAATGT+TGG - chr2_3:9853125-9853144 Msa0277340:CDS 40.0%
TGTATGGAGAACTCAATGCA+CGG + chr2_3:9853259-9853278 None:intergenic 40.0%
ATGGCATTATTGTACCTGCT+CGG + chr2_3:9853290-9853309 None:intergenic 40.0%
!! TATGCTGCTGGTTCAAATGT+TGG - chr2_3:9853314-9853333 Msa0277340:CDS 40.0%
AATCAGAGTTTGTGGGGTAA+TGG - chr2_3:9853362-9853381 Msa0277340:intron 40.0%
TTGATTAGTGGTACCAACAG+AGG + chr2_3:9853495-9853514 None:intergenic 40.0%
! AGGCTTGGAGATGTGATTTT+AGG - chr2_3:9853560-9853579 Msa0277340:intron 40.0%
! GGCTTGGAGATGTGATTTTA+GGG - chr2_3:9853561-9853580 Msa0277340:intron 40.0%
!!! ATTTTAGGGTCAAAAGCGGT+AGG - chr2_3:9853575-9853594 Msa0277340:intron 40.0%
ATAAAATGGCCCAGCTTCAA+AGG + chr2_3:9853687-9853706 None:intergenic 40.0%
! GATTCTGGTCCTCTTAGTTT+TGG - chr2_3:9853746-9853765 Msa0277340:intron 40.0%
! TTAATGCGCAAAAGCTCTAG+TGG - chr2_3:9853791-9853810 Msa0277340:intron 40.0%
GCTCAGACACACTCAAATTA+TGG + chr2_3:9854155-9854174 None:intergenic 40.0%
! TACTTCAGGAATTGCTGCTT+AGG - chr2_3:9854456-9854475 Msa0277340:intron 40.0%
ACACAAGCTAGCATCATACA+TGG + chr2_3:9854491-9854510 None:intergenic 40.0%
GTTTCGAAGGTGAATGAATG+TGG - chr2_3:9854509-9854528 Msa0277340:intron 40.0%
TCGTTAGAGCCAATTGGATT+TGG - chr2_3:9854581-9854600 Msa0277340:intron 40.0%
TCAACACTGCCAAATCCAAT+TGG + chr2_3:9854593-9854612 None:intergenic 40.0%
! GATTATGTGAAAGTGCAGGG+TGG - chr2_3:9851752-9851771 Msa0277340:intron 45.0%
TCGGTCTTCATTTGTATCCC+AGG + chr2_3:9851814-9851833 None:intergenic 45.0%
GATAATGAAGGATCGGACCA+CGG - chr2_3:9851878-9851897 Msa0277340:intron 45.0%
ATAATGAAGGATCGGACCAC+GGG - chr2_3:9851879-9851898 Msa0277340:intron 45.0%
CATCTCAATCATTTCCGTGG+GGG + chr2_3:9852076-9852095 None:intergenic 45.0%
GCATCTCAATCATTTCCGTG+GGG + chr2_3:9852077-9852096 None:intergenic 45.0%
GTTTCTCTCTCACTCTCACA+TGG - chr2_3:9852535-9852554 Msa0277340:CDS 45.0%
CATAACACTCAACGTCCTAG+AGG - chr2_3:9852852-9852871 Msa0277340:CDS 45.0%
! ACTCAACGTCCTAGAGGTTT+TGG - chr2_3:9852858-9852877 Msa0277340:CDS 45.0%
TAAGTCCATGTCCTCCAATC+AGG + chr2_3:9853094-9853113 None:intergenic 45.0%
TTCAGTCCTAGTTATGGGAC+AGG - chr2_3:9853167-9853186 Msa0277340:CDS 45.0%
TTGAGTCCTGTCCCATAACT+AGG + chr2_3:9853176-9853195 None:intergenic 45.0%
GAGCAGGTACAATAATGCCA+TGG - chr2_3:9853289-9853308 Msa0277340:CDS 45.0%
!! AGAAAGCATCAGAGCTTGCA+GGG + chr2_3:9853409-9853428 None:intergenic 45.0%
!! AAGAAAGCATCAGAGCTTGC+AGG + chr2_3:9853410-9853429 None:intergenic 45.0%
! GCAAGCTCTGATGCTTTCTT+AGG - chr2_3:9853410-9853429 Msa0277340:intron 45.0%
GTTGGTACCACTAATCAAGC+TGG - chr2_3:9853497-9853516 Msa0277340:intron 45.0%
!! GGAACTATTGGCTCTGGTTA+TGG - chr2_3:9853518-9853537 Msa0277340:intron 45.0%
TCATCGTCCGCTTTCTCAAA+TGG - chr2_3:9853635-9853654 Msa0277340:intron 45.0%
CTCAAATGGCAATTATGGCG+AGG - chr2_3:9853649-9853668 Msa0277340:intron 45.0%
ATTTGAGTGTGTCTGAGCAC+AGG - chr2_3:9854157-9854176 Msa0277340:CDS 45.0%
! TCAGGAATTGCTGCTTAGGA+AGG - chr2_3:9854460-9854479 Msa0277340:intron 45.0%
! GATGCTAGCTTGTGTTTCGA+AGG - chr2_3:9854496-9854515 Msa0277340:intron 45.0%
CCAACTCTACTTGTCCAAAG+AGG + chr2_3:9854815-9854834 None:intergenic 45.0%
CCTCTTTGGACAAGTAGAGT+TGG - chr2_3:9854812-9854831 Msa0277340:five_prime_UTR 45.0%
! TTGGACCATGTTGCTAGTCT+TGG - chr2_3:9854831-9854850 Msa0277340:five_prime_UTR 45.0%
!! ATAAATATGTATATATATAA+TGG + chr2_3:9851091-9851110 None:intergenic 5.0%
!!! TTTTAAAAGATTTTATTTTA+TGG - chr2_3:9851692-9851711 Msa0277340:intron 5.0%
GAAGAAAGAGAGAGGGCGAA+AGG + chr2_3:9851165-9851184 None:intergenic 50.0%
! GTGAAAGTGCAGGGTGGATA+TGG - chr2_3:9851758-9851777 Msa0277340:intron 50.0%
CTCCAATGAATAGCTTCCCC+GGG + chr2_3:9851785-9851804 None:intergenic 50.0%
CCTCCAATGAATAGCTTCCC+CGG + chr2_3:9851786-9851805 None:intergenic 50.0%
CGGGGAAGCTATTCATTGGA+GGG - chr2_3:9851784-9851803 Msa0277340:intron 50.0%
TGTTGCCGAACGCGTTGTTA+TGG - chr2_3:9851944-9851963 Msa0277340:intron 50.0%
AGAAGCAACAGCAGCAGTCA+TGG - chr2_3:9852696-9852715 Msa0277340:CDS 50.0%
AGCTGACCTCTACTTGGACT+TGG + chr2_3:9852996-9853015 None:intergenic 50.0%
AGTCCAAGTAGAGGTCAGCT+AGG - chr2_3:9852996-9853015 Msa0277340:CDS 50.0%
AATGCCATGGCATATGCTGC+TGG - chr2_3:9853302-9853321 Msa0277340:CDS 50.0%
TGAACCAGCAGCATATGCCA+TGG + chr2_3:9853309-9853328 None:intergenic 50.0%
!! TCGCTTTGGAGTACCTCTGT+TGG - chr2_3:9853479-9853498 Msa0277340:intron 50.0%
!! CAAGCTGGAACTATTGGCTC+TGG - chr2_3:9853512-9853531 Msa0277340:intron 50.0%
GGGTCAAAAGCGGTAGGTTA+TGG - chr2_3:9853581-9853600 Msa0277340:intron 50.0%
! ATGCGCAAAAGCTCTAGTGG+TGG - chr2_3:9853794-9853813 Msa0277340:intron 50.0%
ACAATACCAGTGTGTGCGAG+CGG - chr2_3:9854041-9854060 Msa0277340:CDS 50.0%
!! ACCATGTTGCTAGTCTTGGC+TGG - chr2_3:9854835-9854854 Msa0277340:five_prime_UTR 50.0%
ACCAGCCAAGACTAGCAACA+TGG + chr2_3:9854839-9854858 None:intergenic 50.0%
!! TGTTGCTAGTCTTGGCTGGT+TGG - chr2_3:9854839-9854858 Msa0277340:five_prime_UTR 50.0%
GACCCGGGGAAGCTATTCAT+TGG - chr2_3:9851780-9851799 Msa0277340:intron 55.0%
CCGGGGAAGCTATTCATTGG+AGG - chr2_3:9851783-9851802 Msa0277340:intron 55.0%
ACAACGCGTTCGGCAACAGA+AGG + chr2_3:9851942-9851961 None:intergenic 55.0%
GTGCGTATAGGAGTAGGAGC+AGG + chr2_3:9852726-9852745 None:intergenic 55.0%
GGTTAAGAGGGCTGTCCCAA+AGG - chr2_3:9852962-9852981 Msa0277340:CDS 55.0%
CCACCTAGCTGACCTCTACT+TGG + chr2_3:9853002-9853021 None:intergenic 55.0%
CCAAGTAGAGGTCAGCTAGG+TGG - chr2_3:9852999-9853018 Msa0277340:CDS 55.0%
CCATGTCCTCCAATCAGGCT+TGG + chr2_3:9853089-9853108 None:intergenic 55.0%
CCAAGCCTGATTGGAGGACA+TGG - chr2_3:9853086-9853105 Msa0277340:CDS 55.0%
CCACTACGGCCAACATTAGC+AGG + chr2_3:9853137-9853156 None:intergenic 55.0%
CCTGCTAATGTTGGCCGTAG+TGG - chr2_3:9853134-9853153 Msa0277340:CDS 55.0%
CTGCTCGGACTTGCACTGTA+TGG + chr2_3:9853275-9853294 None:intergenic 55.0%
CATACAGTGCAAGTCCGAGC+AGG - chr2_3:9853273-9853292 Msa0277340:CDS 55.0%
! AGCTCTAGTGGTGGCCACAT+TGG - chr2_3:9853803-9853822 Msa0277340:intron 55.0%
GCTCTAGTGGTGGCCACATT+GGG - chr2_3:9853804-9853823 Msa0277340:intron 55.0%
CTCTAGTGGTGGCCACATTG+GGG - chr2_3:9853805-9853824 Msa0277340:intron 55.0%
CAACAGCATAGGCCCCAATG+TGG + chr2_3:9853820-9853839 None:intergenic 55.0%
GTTTATCCGCTCGCACACAC+TGG + chr2_3:9854050-9854069 None:intergenic 55.0%
GTGCAGGGTGGATATGGACC+CGG - chr2_3:9851764-9851783 Msa0277340:intron 60.0%
TGCAGGGTGGATATGGACCC+GGG - chr2_3:9851765-9851784 Msa0277340:intron 60.0%
AAAACCACGAGCACGTCCCG+TGG + chr2_3:9851898-9851917 None:intergenic 60.0%
! ACGGGACGTGCTCGTGGTTT+TGG - chr2_3:9851897-9851916 Msa0277340:intron 60.0%
GCAGGGTGGATATGGACCCG+GGG - chr2_3:9851766-9851785 Msa0277340:intron 65.0%
CGGACCACGGGACGTGCTCG+TGG - chr2_3:9851891-9851910 Msa0277340:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 9851026 9855002 9851026 ID=Msa0277340;Name=Msa0277340
chr2_3 mRNA 9851026 9855002 9851026 ID=Msa0277340-mRNA-1;Parent=Msa0277340;Name=Msa0277340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=228|0.66|0.75|1|0.66|0.75|4|386|518
chr2_3 exon 9851026 9851564 9851026 ID=Msa0277340-mRNA-1:exon:4404;Parent=Msa0277340-mRNA-1
chr2_3 exon 9852193 9853380 9852193 ID=Msa0277340-mRNA-1:exon:4403;Parent=Msa0277340-mRNA-1
chr2_3 exon 9854036 9854258 9854036 ID=Msa0277340-mRNA-1:exon:4402;Parent=Msa0277340-mRNA-1
chr2_3 exon 9854782 9855002 9854782 ID=Msa0277340-mRNA-1:exon:4401;Parent=Msa0277340-mRNA-1
chr2_3 five_prime_UTR 9854782 9855002 9854782 ID=Msa0277340-mRNA-1:five_prime_utr;Parent=Msa0277340-mRNA-1
chr2_3 five_prime_UTR 9854252 9854258 9854252 ID=Msa0277340-mRNA-1:five_prime_utr;Parent=Msa0277340-mRNA-1
chr2_3 CDS 9854036 9854251 9854036 ID=Msa0277340-mRNA-1:cds;Parent=Msa0277340-mRNA-1
chr2_3 CDS 9852193 9853380 9852193 ID=Msa0277340-mRNA-1:cds;Parent=Msa0277340-mRNA-1
chr2_3 CDS 9851412 9851564 9851412 ID=Msa0277340-mRNA-1:cds;Parent=Msa0277340-mRNA-1
chr2_3 three_prime_UTR 9851026 9851411 9851026 ID=Msa0277340-mRNA-1:three_prime_utr;Parent=Msa0277340-mRNA-1
Gene Sequence

>Msa0277340

ATGGACCCGGGGAAGCTATTCATTGGAGGGATTTCCTGGGATACAAATGAAGACCGACTCAGACAGTATTTTCAGAACTTTGGAGATGTAGTTGAAGCTGTGATAATGAAGGATCGGACCACGGGACGTGCTCGTGGTTTTGGATTTGTTGTTTTTGCTGATCCTTCTGTTGCCGAACGCGTTGTTATGGAAAAACATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAAGCTGTCCCTAGAGATGATCAGAATGTGTTTAGCAGAAGCAACAGCAGCAGTCATGGATCGCCTGCTCCTACTCCTATACGCACAAAAAAGATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGAGTGATTTTAAGAATTACTTTGATCAATTCGGAACAATTACTGATGTTGTTGTAATGTATGATCATAACACTCAACGTCCTAGAGGTTTTGGATTCATCACATATGATTCTGAGGAAGCAGTTGAAAAAGTGCTGCACAAAACTTTTCACGAACTTAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTCCCAAAGGATTTATCTCCAAGTCCAAGTAGAGGTCAGCTAGGTGGATTTAGTTACGGTACTATGAGTAGAGTTGGTAGTTTTTCTAATGGTTTTGCTCAGGGATATAATCCAAGCCTGATTGGAGGACATGGACTTAGATTAGACGGTAGATTGAGTCCTGCTAATGTTGGCCGTAGTGGATATTCTCTTTTCAGTCCTAGTTATGGGACAGGACTCAACTTTGAGCCACCATTGAACCATAATGAAAATGAAAACTTCACTTCTAACTTTATCATGGGCCGTGCATTGAGTTCTCCATACAGTGCAAGTCCGAGCAGGTACAATAATGCCATGGCATATGCTGCTGGTTCAAATGTTGGCAACAGTTCAGCCATAAATTCAACAAATCAGAGTTTGTGGGGTAATGGAAATCTTAATTATGCTAATAACCCTGCAAGCTCTGATGCTTTCTTAGGTTACGGAAGTGAAAATTCAAGTATTGGTTCATTTGGAAATATTGGATCGCTTTGGAGTACCTCTGTTGGTACCACTAATCAAGCTGGAACTATTGGCTCTGGTTATGGTAAAAGCAGTCTTAATTATAGGCTTGGAGATGTGATTTTAGGGTCAAAAGCGGTAGGTTATGGAAAAAGCAGTGAAAGCAATGTTGAATCAGATTCATCGTCCGCTTTCTCAAATGGCAATTATGGCGAGGCATATAAAAATACCTTTGAAGCTGGGCCATTTTATCAAGACCATACTTGGAGATCAACAACTTCAGAATTAGAGGATTCTGGTCCTCTTAGTTTTGGCCTTGAAAATGCCGTTTCAGATTTAATGCGCAAAAGCTCTAGTGGTGGCCACATTGGGGCCTATGCTGAATTGCTGCTTAGGAAGGTTATGCCATGTATGATGCTAGCTTGTGTTTCGAAGGTGAATGAATGTGGAAAGCATAAATCTTCTTCGTTTCGTGATAGTTTGAATGATTCTAAAATTTCGTTAGAGCCAATTGGATTTGGCAGTGTTGAATAA
Protein sequence

>Msa0277340

MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFSRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRSGYSLFSPSYGTGLNFEPPLNHNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSNVGNSSAINSTNQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGTTNQAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKSSESNVESDSSSAFSNGNYGEAYKNTFEAGPFYQDHTWRSTTSELEDSGPLSFGLENAVSDLMRKSSSGGHIGAYAELLLRKVMPCMMLACVSKVNECGKHKSSSFRDSLNDSKISLEPIGFGSVE*