Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178370 | AFK34355.1 | 97.500 | 200 | 5 | 0 | 1 | 200 | 1 | 200 | 2.41e-130 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178370 | sp|P93788|REMO_SOLTU | 57.820 | 211 | 65 | 6 | 1 | 200 | 1 | 198 | 6.17e-67 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa1178370 | 0.816396 | 5.649921e-52 | -8.615850e-47 |
| Msa0052350 | Msa1178370 | -0.828857 | 7.118425e-55 | -8.615850e-47 |
| Msa0055070 | Msa1178370 | 0.831040 | 2.090946e-55 | -8.615850e-47 |
| Msa0079230 | Msa1178370 | 0.812847 | 3.449814e-51 | -8.615850e-47 |
| Msa0090030 | Msa1178370 | 0.824424 | 8.132346e-54 | -8.615850e-47 |
| Msa0094010 | Msa1178370 | 0.821268 | 4.419325e-53 | -8.615850e-47 |
| Msa0099510 | Msa1178370 | 0.815038 | 1.134303e-51 | -8.615850e-47 |
| Msa0101020 | Msa1178370 | 0.834044 | 3.763118e-56 | -8.615850e-47 |
| Msa0101180 | Msa1178370 | 0.803224 | 3.861071e-49 | -8.615850e-47 |
| Msa0118000 | Msa1178370 | 0.834232 | 3.375755e-56 | -8.615850e-47 |
| Msa0609000 | Msa1178370 | 0.827963 | 1.170004e-54 | -8.615850e-47 |
| Msa0609220 | Msa1178370 | 0.804532 | 2.064567e-49 | -8.615850e-47 |
| Msa0615680 | Msa1178370 | 0.818504 | 1.894146e-52 | -8.615850e-47 |
| Msa0618930 | Msa1178370 | 0.816652 | 4.952974e-52 | -8.615850e-47 |
| Msa0620330 | Msa1178370 | 0.800117 | 1.675461e-48 | -8.615850e-47 |
| Msa0633760 | Msa1178370 | 0.808339 | 3.251688e-50 | -8.615850e-47 |
| Msa0644030 | Msa1178370 | 0.804405 | 2.194564e-49 | -8.615850e-47 |
| Msa0651150 | Msa1178370 | 0.808843 | 2.537174e-50 | -8.615850e-47 |
| Msa0664760 | Msa1178370 | 0.809239 | 2.087670e-50 | -8.615850e-47 |
| Msa0683140 | Msa1178370 | 0.810209 | 1.291755e-50 | -8.615850e-47 |
| Msa0687230 | Msa1178370 | 0.817008 | 4.119151e-52 | -8.615850e-47 |
| Msa0705820 | Msa1178370 | 0.809688 | 1.671692e-50 | -8.615850e-47 |
| Msa0706390 | Msa1178370 | 0.824592 | 7.426586e-54 | -8.615850e-47 |
| Msa0707390 | Msa1178370 | 0.828123 | 1.070724e-54 | -8.615850e-47 |
| Msa0720370 | Msa1178370 | 0.803159 | 3.982204e-49 | -8.615850e-47 |
| Msa0736570 | Msa1178370 | 0.807531 | 4.829974e-50 | -8.615850e-47 |
| Msa0748920 | Msa1178370 | 0.812792 | 3.546793e-51 | -8.615850e-47 |
| Msa0758230 | Msa1178370 | 0.839652 | 1.394160e-57 | -8.615850e-47 |
| Msa0774750 | Msa1178370 | 0.804333 | 2.271296e-49 | -8.615850e-47 |
| Msa0776750 | Msa1178370 | 0.800387 | 1.475811e-48 | -8.615850e-47 |
| Msa0788110 | Msa1178370 | 0.833146 | 6.306076e-56 | -8.615850e-47 |
| Msa0791240 | Msa1178370 | 0.803700 | 3.076337e-49 | -8.615850e-47 |
| Msa0791820 | Msa1178370 | 0.803741 | 3.015802e-49 | -8.615850e-47 |
| Msa0794050 | Msa1178370 | 0.849273 | 3.594038e-60 | -8.615850e-47 |
| Msa0799010 | Msa1178370 | -0.821913 | 3.135760e-53 | -8.615850e-47 |
| Msa0812060 | Msa1178370 | 0.801142 | 1.035288e-48 | -8.615850e-47 |
| Msa0818770 | Msa1178370 | 0.851477 | 8.650701e-61 | -8.615850e-47 |
| Msa0826500 | Msa1178370 | 0.825649 | 4.178861e-54 | -8.615850e-47 |
| Msa0837420 | Msa1178370 | -0.801197 | 1.008615e-48 | -8.615850e-47 |
| Msa0140400 | Msa1178370 | 0.805440 | 1.333344e-49 | -8.615850e-47 |
| Msa0145110 | Msa1178370 | 0.841384 | 4.909901e-58 | -8.615850e-47 |
| Msa0196340 | Msa1178370 | 0.816841 | 4.490666e-52 | -8.615850e-47 |
| Msa0197530 | Msa1178370 | 0.814307 | 1.646576e-51 | -8.615850e-47 |
| Msa0202930 | Msa1178370 | 0.814762 | 1.306372e-51 | -8.615850e-47 |
| Msa0207350 | Msa1178370 | 0.800432 | 1.445123e-48 | -8.615850e-47 |
| Msa0208810 | Msa1178370 | 0.800899 | 1.160762e-48 | -8.615850e-47 |
| Msa0233380 | Msa1178370 | 0.807510 | 4.879438e-50 | -8.615850e-47 |
| Msa0238230 | Msa1178370 | 0.816186 | 6.297303e-52 | -8.615850e-47 |
| Msa0370160 | Msa1178370 | -0.805678 | 1.188528e-49 | -8.615850e-47 |
| Msa0419520 | Msa1178370 | 0.814250 | 1.695080e-51 | -8.615850e-47 |
| Msa0423270 | Msa1178370 | 0.803139 | 4.019478e-49 | -8.615850e-47 |
| Msa0436190 | Msa1178370 | 0.809253 | 2.073488e-50 | -8.615850e-47 |
| Msa0436200 | Msa1178370 | 0.813631 | 2.321710e-51 | -8.615850e-47 |
| Msa0437510 | Msa1178370 | 0.838925 | 2.152461e-57 | -8.615850e-47 |
| Msa0437690 | Msa1178370 | -0.803050 | 4.194350e-49 | -8.615850e-47 |
| Msa0439890 | Msa1178370 | 0.828498 | 8.692794e-55 | -8.615850e-47 |
| Msa0472720 | Msa1178370 | 0.806915 | 6.521534e-50 | -8.615850e-47 |
| Msa1001350 | Msa1178370 | 0.801214 | 1.000863e-48 | -8.615850e-47 |
| Msa1002600 | Msa1178370 | -0.826010 | 3.430108e-54 | -8.615850e-47 |
| Msa1036910 | Msa1178370 | 0.801648 | 8.153752e-49 | -8.615850e-47 |
| Msa1071660 | Msa1178370 | 0.857316 | 1.773645e-62 | -8.615850e-47 |
| Msa1073490 | Msa1178370 | 0.802425 | 5.644151e-49 | -8.615850e-47 |
| Msa1084500 | Msa1178370 | -0.825910 | 3.621964e-54 | -8.615850e-47 |
| Msa0239060 | Msa1178370 | 0.819536 | 1.103222e-52 | -8.615850e-47 |
| Msa0244980 | Msa1178370 | 0.805964 | 1.034992e-49 | -8.615850e-47 |
| Msa0277340 | Msa1178370 | 0.818427 | 1.971820e-52 | -8.615850e-47 |
| Msa0295000 | Msa1178370 | -0.832204 | 1.080304e-55 | -8.615850e-47 |
| Msa0296980 | Msa1178370 | -0.801960 | 7.034468e-49 | -8.615850e-47 |
| Msa0335320 | Msa1178370 | -0.807913 | 4.007418e-50 | -8.615850e-47 |
| Msa0358120 | Msa1178370 | 0.805799 | 1.121115e-49 | -8.615850e-47 |
| Msa1113880 | Msa1178370 | 0.800020 | 1.753268e-48 | -8.615850e-47 |
| Msa1114040 | Msa1178370 | 0.801561 | 8.495231e-49 | -8.615850e-47 |
| Msa1118710 | Msa1178370 | 0.843494 | 1.353704e-58 | -8.615850e-47 |
| Msa1125790 | Msa1178370 | -0.829675 | 4.508409e-55 | -8.615850e-47 |
| Msa1131560 | Msa1178370 | 0.809779 | 1.598306e-50 | -8.615850e-47 |
| Msa1135800 | Msa1178370 | -0.822816 | 1.934867e-53 | -8.615850e-47 |
| Msa1135810 | Msa1178370 | -0.806073 | 9.820919e-50 | -8.615850e-47 |
| Msa1158770 | Msa1178370 | 0.854964 | 8.666793e-62 | -8.615850e-47 |
| Msa1169720 | Msa1178370 | 0.810862 | 9.331976e-51 | -8.615850e-47 |
| Msa1173900 | Msa1178370 | 0.873369 | 1.550955e-67 | -8.615850e-47 |
| Msa1178370 | Msa1188560 | 0.821789 | 3.348971e-53 | -8.615850e-47 |
| Msa1178370 | Msa1200320 | 0.862893 | 3.669854e-64 | -8.615850e-47 |
| Msa1178370 | Msa1205850 | 0.809464 | 1.867716e-50 | -8.615850e-47 |
| Msa1178370 | Msa1207730 | 0.803453 | 3.460819e-49 | -8.615850e-47 |
| Msa1178370 | Msa1226610 | 0.824730 | 6.891372e-54 | -8.615850e-47 |
| Msa1178370 | Msa1253810 | 0.823289 | 1.500504e-53 | -8.615850e-47 |
| Msa1178370 | Msa1256270 | -0.832101 | 1.145741e-55 | -8.615850e-47 |
| Msa1178370 | Msa1296460 | -0.812957 | 3.264286e-51 | -8.615850e-47 |
| Msa1178370 | Msa1299700 | 0.804217 | 2.401238e-49 | -8.615850e-47 |
| Msa1178370 | Msa1303580 | 0.801387 | 9.221353e-49 | -8.615850e-47 |
| Msa1178370 | Msa1318620 | 0.828350 | 9.441227e-55 | -8.615850e-47 |
| Msa1178370 | Msa1359270 | 0.821134 | 4.746039e-53 | -8.615850e-47 |
| Msa1178370 | Msa1363700 | 0.819201 | 1.315040e-52 | -8.615850e-47 |
| Msa1178370 | Msa1367490 | 0.801013 | 1.099833e-48 | -8.615850e-47 |
| Msa1178370 | Msa1369490 | 0.805636 | 1.213384e-49 | -8.615850e-47 |
| Msa1178370 | Msa1371090 | 0.805136 | 1.544518e-49 | -8.615850e-47 |
| Msa1178370 | Msa1381480 | 0.811967 | 5.371700e-51 | -8.615850e-47 |
| Msa1178370 | Msa1401420 | 0.811686 | 6.183535e-51 | -8.615850e-47 |
| Msa1178370 | Msa1407970 | 0.805895 | 1.070289e-49 | -8.615850e-47 |
| Msa1178370 | Msa1418960 | -0.825024 | 5.873760e-54 | -8.615850e-47 |
| Msa1178370 | Msa1422810 | 0.831313 | 1.791246e-55 | -8.615850e-47 |
| Msa1178370 | Msa1433600 | 0.801353 | 9.370416e-49 | -8.615850e-47 |
| Msa1178370 | Msa1449910 | 0.842577 | 2.374714e-58 | -8.615850e-47 |
| Msa1178370 | Msa1459960 | 0.802799 | 4.727004e-49 | -8.615850e-47 |
| Msa0514610 | Msa1178370 | 0.822520 | 2.267303e-53 | -8.615850e-47 |
| Msa0524590 | Msa1178370 | 0.808361 | 3.216397e-50 | -8.615850e-47 |
| Msa0524600 | Msa1178370 | 0.800110 | 1.680408e-48 | -8.615850e-47 |
| Msa0527910 | Msa1178370 | 0.801812 | 7.546703e-49 | -8.615850e-47 |
| Msa0550540 | Msa1178370 | 0.825276 | 5.121365e-54 | -8.615850e-47 |
| Msa0550570 | Msa1178370 | 0.820299 | 7.381211e-53 | -8.615850e-47 |
| Msa0578090 | Msa1178370 | 0.820206 | 7.754112e-53 | -8.615850e-47 |
| Msa0585650 | Msa1178370 | -0.802934 | 4.432166e-49 | -8.615850e-47 |
| Msa0586850 | Msa1178370 | 0.810256 | 1.262045e-50 | -8.615850e-47 |
| Msa0600080 | Msa1178370 | 0.819574 | 1.081098e-52 | -8.615850e-47 |
| Msa0602370 | Msa1178370 | 0.855054 | 8.158733e-62 | -8.615850e-47 |
| Msa0877710 | Msa1178370 | 0.806529 | 7.872018e-50 | -8.615850e-47 |
| Msa0888990 | Msa1178370 | 0.802621 | 5.144048e-49 | -8.615850e-47 |
| Msa0901110 | Msa1178370 | 0.807246 | 5.552470e-50 | -8.615850e-47 |
| Msa0944200 | Msa1178370 | 0.815672 | 8.198753e-52 | -8.615850e-47 |
| Msa0945100 | Msa1178370 | 0.823403 | 1.411450e-53 | -8.615850e-47 |
| Msa0973320 | Msa1178370 | 0.812743 | 3.636509e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178370 | MtrunA17_Chr8g0349271 | 98.000 | 200 | 4 | 0 | 1 | 200 | 1 | 200 | 2.59e-134 | 374 |
| Msa1178370 | MtrunA17_Chr1g0203401 | 58.854 | 192 | 66 | 3 | 22 | 200 | 18 | 209 | 1.39e-60 | 188 |
| Msa1178370 | MtrunA17_Chr5g0397781 | 59.836 | 122 | 49 | 0 | 79 | 200 | 86 | 207 | 4.45e-44 | 145 |
| Msa1178370 | MtrunA17_Chr8g0386521 | 41.848 | 184 | 106 | 1 | 17 | 200 | 16 | 198 | 7.43e-41 | 137 |
| Msa1178370 | MtrunA17_Chr7g0247121 | 64.615 | 65 | 23 | 0 | 136 | 200 | 34 | 98 | 1.75e-26 | 97.4 |
| Msa1178370 | MtrunA17_Chr1g0173571 | 31.148 | 122 | 84 | 0 | 74 | 195 | 148 | 269 | 2.15e-12 | 64.3 |
| Msa1178370 | MtrunA17_Chr1g0153281 | 32.743 | 113 | 75 | 1 | 88 | 200 | 504 | 615 | 2.22e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178370 | AT3G61260.1 | 63.030 | 165 | 57 | 3 | 40 | 200 | 48 | 212 | 1.47e-63 | 196 |
| Msa1178370 | AT5G23750.2 | 52.195 | 205 | 89 | 4 | 1 | 200 | 1 | 201 | 2.35e-56 | 177 |
| Msa1178370 | AT3G48940.1 | 58.784 | 148 | 61 | 0 | 53 | 200 | 28 | 175 | 4.70e-56 | 176 |
| Msa1178370 | AT2G45820.1 | 56.585 | 205 | 69 | 6 | 1 | 200 | 1 | 190 | 1.83e-54 | 172 |
| Msa1178370 | AT5G23750.1 | 52.217 | 203 | 93 | 3 | 1 | 200 | 1 | 202 | 4.13e-54 | 171 |
| Msa1178370 | AT5G23750.3 | 52.217 | 203 | 93 | 3 | 1 | 200 | 28 | 229 | 9.83e-54 | 171 |
| Msa1178370 | AT1G63295.1 | 43.802 | 121 | 65 | 2 | 83 | 200 | 31 | 151 | 9.32e-23 | 89.7 |
| Msa1178370 | AT1G63295.2 | 43.802 | 121 | 65 | 2 | 83 | 200 | 71 | 191 | 1.77e-22 | 90.1 |
| Msa1178370 | AT4G00670.1 | 42.991 | 107 | 60 | 1 | 95 | 200 | 17 | 123 | 3.53e-22 | 87.4 |
| Msa1178370 | AT1G30320.1 | 37.037 | 108 | 64 | 1 | 97 | 200 | 401 | 508 | 1.19e-11 | 63.2 |
Find 66 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAGAAAGAAGAAGTTTA+AGG | 0.152605 | 8_1:+11064653 | None:intergenic |
| GATATTGCTCTTGCAGAAAT+AGG | 0.169856 | 8_1:-11061955 | Msa1178370:CDS |
| TATAGACAAAATTTCATAAT+TGG | 0.216142 | 8_1:+11060505 | None:intergenic |
| AAGCATCCAAGGAGTTTCTT+TGG | 0.251656 | 8_1:+11060544 | None:intergenic |
| TAATTACTATATAAAACTAT+TGG | 0.275200 | 8_1:-11060329 | Msa1178370:three_prime_UTR |
| TTCTTACTTATTCTCTGCTT+TGG | 0.294744 | 8_1:+11061882 | None:intergenic |
| TGGACAGCAGAGAGGATCTT+TGG | 0.329049 | 8_1:-11060391 | Msa1178370:three_prime_UTR |
| AATTACTATATAAAACTATT+GGG | 0.341068 | 8_1:-11060328 | Msa1178370:three_prime_UTR |
| GAACTGCTTCTTGCTTGGTT+TGG | 0.343276 | 8_1:+11064591 | None:intergenic |
| AACACTTTGGCAGGAGCAAT+TGG | 0.362647 | 8_1:-11060725 | Msa1178370:intron |
| GCTCTCTACTGTTGCTGCTT+GGG | 0.383440 | 8_1:-11061549 | Msa1178370:CDS |
| GGCTCAACCGCAGCAGGAGC+TGG | 0.397851 | 8_1:+11064533 | None:intergenic |
| AGCAGGAACTGCTTCTTGCT+TGG | 0.401159 | 8_1:+11064586 | None:intergenic |
| ACCGGTGCCGGTGCCGGAGC+AGG | 0.401388 | 8_1:+11064563 | None:intergenic |
| TCCTGCTCCGGCACCGGCAC+CGG | 0.408876 | 8_1:-11064564 | Msa1178370:CDS |
| ATGAAAGGAAATTTAGAAGT+AGG | 0.417031 | 8_1:+11060215 | None:intergenic |
| ATATTGCTCTTGCAGAAATA+GGG | 0.422448 | 8_1:-11061954 | Msa1178370:CDS |
| ACAATGTATAGTTGGTAGAT+TGG | 0.429592 | 8_1:+11060164 | None:intergenic |
| GTTGGAACCGGTGCCGGTGC+CGG | 0.434603 | 8_1:+11064557 | None:intergenic |
| GTGTGTGAGTGTAAAAGTTA+TGG | 0.444682 | 8_1:-11060442 | Msa1178370:three_prime_UTR |
| AGAGGTGGCTCAACCGCAGC+AGG | 0.447015 | 8_1:+11064527 | None:intergenic |
| TCCTGCTCCTGCTCCGGCAC+CGG | 0.451400 | 8_1:-11064570 | Msa1178370:CDS |
| GCCGGTGCCGGAGCAGGAGC+AGG | 0.453467 | 8_1:+11064569 | None:intergenic |
| AGCTCTCTACTGTTGCTGCT+TGG | 0.453757 | 8_1:-11061550 | Msa1178370:CDS |
| GCTGCAAAACATAATGCAAC+AGG | 0.462965 | 8_1:-11060574 | Msa1178370:CDS |
| GCCTTTGTGTCATCTGCTAC+AGG | 0.470399 | 8_1:+11064452 | None:intergenic |
| GCAGGAGCTGGAGTTGGAAC+CGG | 0.472694 | 8_1:+11064545 | None:intergenic |
| CAGAAATAGGGAAAGAGAAA+AGG | 0.476722 | 8_1:-11061942 | Msa1178370:CDS |
| ACCTCTAGCTGAGGCTCCAC+CGG | 0.486081 | 8_1:-11064510 | Msa1178370:CDS |
| GCTGGAGTTGGAACCGGTGC+CGG | 0.491097 | 8_1:+11064551 | None:intergenic |
| AGCAGTTCCTGCTCCTGCTC+CGG | 0.505398 | 8_1:-11064576 | Msa1178370:CDS |
| AACAAGACTAACCTCTATCA+AGG | 0.505662 | 8_1:+11062498 | None:intergenic |
| AAGAATGCATCCCTTGATAG+AGG | 0.508900 | 8_1:-11062509 | Msa1178370:intron |
| GGTTATCTAATGTGAAGGCA+TGG | 0.509564 | 8_1:-11061921 | Msa1178370:CDS |
| TTGGTTTGGAGTTCAGCCAT+AGG | 0.510361 | 8_1:+11064605 | None:intergenic |
| ACAGTTCCAAAGAAACTCCT+TGG | 0.510701 | 8_1:-11060550 | Msa1178370:CDS |
| TATGGAAAGGGAAAATACAT+TGG | 0.512674 | 8_1:-11060424 | Msa1178370:three_prime_UTR |
| GTGTCATCTGCTACAGGTGG+CGG | 0.533870 | 8_1:+11064458 | None:intergenic |
| CATCATATTAAAAGCATCCA+AGG | 0.533934 | 8_1:+11060533 | None:intergenic |
| AATCAAGAACAAGGTGGCAA+TGG | 0.536099 | 8_1:-11060674 | Msa1178370:CDS |
| ACCGCAGCAGGAGCTGGAGT+TGG | 0.536338 | 8_1:+11064539 | None:intergenic |
| CACAAAGGCACTTGTTGTTG+TGG | 0.563137 | 8_1:-11064438 | Msa1178370:CDS |
| GTTATCTAATGTGAAGGCAT+GGG | 0.574842 | 8_1:-11061920 | Msa1178370:CDS |
| TCCAACTCCAGCTCCTGCTG+CGG | 0.577619 | 8_1:-11064540 | Msa1178370:CDS |
| GGAAAGGGAAAATACATTGG+AGG | 0.579726 | 8_1:-11060421 | Msa1178370:three_prime_UTR |
| GAAAAGGTTATCTAATGTGA+AGG | 0.581637 | 8_1:-11061926 | Msa1178370:CDS |
| GAGTGTAAAAGTTATGGAAA+GGG | 0.581959 | 8_1:-11060436 | Msa1178370:three_prime_UTR |
| TGAAGCAATTCTCAAGGCAG+AGG | 0.599324 | 8_1:-11060602 | Msa1178370:CDS |
| TAGTGGAAAGAATCAATGAA+AGG | 0.599628 | 8_1:+11060200 | None:intergenic |
| ACCGGTGGAGCCTCAGCTAG+AGG | 0.600513 | 8_1:+11064509 | None:intergenic |
| AATACATTGGAGGAACATGT+TGG | 0.602186 | 8_1:-11060411 | Msa1178370:three_prime_UTR |
| ACGTGCTGAAGCAATTCTCA+AGG | 0.603219 | 8_1:-11060608 | Msa1178370:CDS |
| TTGGTTGTGTAATAATGTAG+TGG | 0.621475 | 8_1:+11060183 | None:intergenic |
| ACAAGACTAACCTCTATCAA+GGG | 0.621639 | 8_1:+11062499 | None:intergenic |
| TGAGTGTAAAAGTTATGGAA+AGG | 0.635435 | 8_1:-11060437 | Msa1178370:three_prime_UTR |
| TGGTGAGAAAATCAAGAACA+AGG | 0.641835 | 8_1:-11060683 | Msa1178370:CDS |
| GGTGGAGCCTCAGCTAGAGG+TGG | 0.647130 | 8_1:+11064512 | None:intergenic |
| AACAAAGAACTTGTGTTGTG+TGG | 0.650192 | 8_1:+11064735 | None:intergenic |
| AATGGTTCACAAACAAGCAG+AGG | 0.652178 | 8_1:-11060656 | Msa1178370:CDS |
| TGTTGTTGAAAAGAAAGCGG+CGG | 0.659083 | 8_1:-11064483 | Msa1178370:CDS |
| GGTTGAGCCACCTCTAGCTG+AGG | 0.662051 | 8_1:-11064519 | Msa1178370:CDS |
| TAATGTTGTTGAAAAGAAAG+CGG | 0.672280 | 8_1:-11064486 | Msa1178370:CDS |
| TTTGTGTCATCTGCTACAGG+TGG | 0.687405 | 8_1:+11064455 | None:intergenic |
| ACCTGTAGCAGATGACACAA+AGG | 0.700425 | 8_1:-11064453 | Msa1178370:CDS |
| GAACATGTTGGACAGCAGAG+AGG | 0.707471 | 8_1:-11060399 | Msa1178370:three_prime_UTR |
| TGAGAAAATCAAGAACAAGG+TGG | 0.758003 | 8_1:-11060680 | Msa1178370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTTTTTTTTTTTTTGA+GGG | + | chr8_1:11062318-11062337 | None:intergenic | 10.0% |
| !!! | TACATTTTTTTTTTTTTTTG+AGG | + | chr8_1:11062319-11062338 | None:intergenic | 10.0% |
| !!! | TAATTGCATAAAAATATTTT+AGG | - | chr8_1:11063130-11063149 | Msa1178370:intron | 10.0% |
| !!! | AATTGCATAAAAATATTTTA+GGG | - | chr8_1:11063131-11063150 | Msa1178370:intron | 10.0% |
| !!! | TATTATTATTGATTAAAAGA+TGG | - | chr8_1:11063501-11063520 | Msa1178370:intron | 10.0% |
| !! | TAATTACTATATAAAACTAT+TGG | - | chr8_1:11064608-11064627 | Msa1178370:exon | 10.0% |
| !! | AATTACTATATAAAACTATT+GGG | - | chr8_1:11064609-11064628 | Msa1178370:exon | 10.0% |
| !!! | TTTTTCCTGAAAATTAATTA+TGG | - | chr8_1:11060855-11060874 | Msa1178370:intron | 15.0% |
| !!! | TTTTCCTGAAAATTAATTAT+GGG | - | chr8_1:11060856-11060875 | Msa1178370:intron | 15.0% |
| !!! | ATAATTCTGATATATGTTTT+TGG | - | chr8_1:11061014-11061033 | Msa1178370:intron | 15.0% |
| !!! | TAATTCTGATATATGTTTTT+GGG | - | chr8_1:11061015-11061034 | Msa1178370:intron | 15.0% |
| !! | AAGCTAACTAAATATATAAA+GGG | - | chr8_1:11061359-11061378 | Msa1178370:intron | 15.0% |
| !!! | TCCATAATAATTATACTTTT+AGG | - | chr8_1:11061580-11061599 | Msa1178370:intron | 15.0% |
| !!! | CCATAATAATTATACTTTTA+GGG | - | chr8_1:11061581-11061600 | Msa1178370:intron | 15.0% |
| !!! | TATTTTTTTGTCTTAACATT+TGG | + | chr8_1:11061813-11061832 | None:intergenic | 15.0% |
| !!! | AAGAAAATGTATAATTTTCT+AGG | + | chr8_1:11061866-11061885 | None:intergenic | 15.0% |
| !! | TAATGAAAATCACTTTAATT+TGG | + | chr8_1:11062093-11062112 | None:intergenic | 15.0% |
| !!! | AATATTTTGAAATCAGTTTA+AGG | + | chr8_1:11062119-11062138 | None:intergenic | 15.0% |
| !! | GTTAATATCAAATATCAATA+AGG | + | chr8_1:11062498-11062517 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAACATATTTG+AGG | + | chr8_1:11062953-11062972 | None:intergenic | 15.0% |
| !!! | CAAATATGTTTTTTTTTTTG+TGG | - | chr8_1:11062953-11062972 | Msa1178370:intron | 15.0% |
| !! | TGTTTAATATCCTAAAATTT+AGG | - | chr8_1:11063331-11063350 | Msa1178370:intron | 15.0% |
| !! | GTTTAATATCCTAAAATTTA+GGG | - | chr8_1:11063332-11063351 | Msa1178370:intron | 15.0% |
| !!! | AAGATAAAGATAAGATTTTA+TGG | - | chr8_1:11063604-11063623 | Msa1178370:intron | 15.0% |
| !!! | AATTAAATTTTTGAACACTT+TGG | - | chr8_1:11064199-11064218 | Msa1178370:intron | 15.0% |
| !! | TATAGACAAAATTTCATAAT+TGG | + | chr8_1:11064435-11064454 | None:intergenic | 15.0% |
| !!! | ATATTTTCTCTAAAGTATTA+AGG | + | chr8_1:11064664-11064683 | None:intergenic | 15.0% |
| !! | TTGTATCAATATTGTTTCAT+AGG | - | chr8_1:11060606-11060625 | Msa1178370:CDS | 20.0% |
| !! | TGTATCAATATTGTTTCATA+GGG | - | chr8_1:11060607-11060626 | Msa1178370:CDS | 20.0% |
| !! | AGTGAAAATTAATGAAAGTA+TGG | - | chr8_1:11060658-11060677 | Msa1178370:CDS | 20.0% |
| !!! | AAAACCCATAATTAATTTTC+AGG | + | chr8_1:11060863-11060882 | None:intergenic | 20.0% |
| !! | ACCATAACTAATAATTGAAA+AGG | + | chr8_1:11061193-11061212 | None:intergenic | 20.0% |
| !! | ATGATGTGACATATTAAATA+TGG | - | chr8_1:11061227-11061246 | Msa1178370:intron | 20.0% |
| !! | TGATGTGACATATTAAATAT+GGG | - | chr8_1:11061228-11061247 | Msa1178370:intron | 20.0% |
| !! | CAAGCTAACTAAATATATAA+AGG | - | chr8_1:11061358-11061377 | Msa1178370:intron | 20.0% |
| !!! | CCCTAAAAGTATAATTATTA+TGG | + | chr8_1:11061584-11061603 | None:intergenic | 20.0% |
| !! | CTTAGTTAAGAATTTATCTA+TGG | + | chr8_1:11061623-11061642 | None:intergenic | 20.0% |
| !! | AATATATCTCTCATATCATT+AGG | - | chr8_1:11061940-11061959 | Msa1178370:CDS | 20.0% |
| !! | ATAGAACAAGAAATGATTTA+AGG | + | chr8_1:11062044-11062063 | None:intergenic | 20.0% |
| !!! | TAAATGATTCTTTGATTTGT+AGG | - | chr8_1:11062177-11062196 | Msa1178370:intron | 20.0% |
| !! | TTCTTTATTGGATTCTAATT+AGG | + | chr8_1:11062270-11062289 | None:intergenic | 20.0% |
| !! | AATTAGAATCCAATAAAGAA+AGG | - | chr8_1:11062270-11062289 | Msa1178370:intron | 20.0% |
| !!! | TTTTTTTTTTTTGAGGGAAA+AGG | + | chr8_1:11062312-11062331 | None:intergenic | 20.0% |
| !!! | TATCTTTACCATTTTTCTTT+TGG | - | chr8_1:11062378-11062397 | Msa1178370:intron | 20.0% |
| !!! | AAATATTTTAGGGATCATTT+TGG | - | chr8_1:11063141-11063160 | Msa1178370:intron | 20.0% |
| !!! | TTTTGAGTAAATGTCTAAAA+TGG | + | chr8_1:11063218-11063237 | None:intergenic | 20.0% |
| !!! | ATTTTTGTGTTATCTTTACA+GGG | - | chr8_1:11063355-11063374 | Msa1178370:intron | 20.0% |
| !! | ATAAAGAAGGATTCAATATA+TGG | + | chr8_1:11063821-11063840 | None:intergenic | 20.0% |
| !! | AGCATAATTCTTTATAAAGA+AGG | + | chr8_1:11063834-11063853 | None:intergenic | 20.0% |
| !! | ATTAGAAAAGAAACTCTAAA+TGG | - | chr8_1:11063862-11063881 | Msa1178370:intron | 20.0% |
| !! | TTCTTTTCAACAACATTAAC+CGG | + | chr8_1:11060449-11060468 | None:intergenic | 25.0% |
| ! | TAATGTTGTTGAAAAGAAAG+CGG | - | chr8_1:11060451-11060470 | Msa1178370:three_prime_UTR | 25.0% |
| ! | AACAAAGGAGAAATTAAAGA+AGG | + | chr8_1:11060549-11060568 | None:intergenic | 25.0% |
| ! | ACAACTCATGATTAAAACAA+AGG | + | chr8_1:11060564-11060583 | None:intergenic | 25.0% |
| !!! | GTTTTGGAAGAAAAAATTGA+AGG | - | chr8_1:11060635-11060654 | Msa1178370:CDS | 25.0% |
| ! | TTTGATTAAATTGTAGAGTG+TGG | - | chr8_1:11060906-11060925 | Msa1178370:intron | 25.0% |
| !!! | AGAACCATTTTTGTATGAAT+TGG | - | chr8_1:11061065-11061084 | Msa1178370:intron | 25.0% |
| !!! | GAACCATTTTTGTATGAATT+GGG | - | chr8_1:11061066-11061085 | Msa1178370:intron | 25.0% |
| ! | TTTCCCAATTCATACAAAAA+TGG | + | chr8_1:11061072-11061091 | None:intergenic | 25.0% |
| !! | GCCTTTTCAATTATTAGTTA+TGG | - | chr8_1:11061189-11061208 | Msa1178370:intron | 25.0% |
| ! | TCAATTATTAGTTATGGTCT+TGG | - | chr8_1:11061195-11061214 | Msa1178370:intron | 25.0% |
| ! | GATGTGACATATTAAATATG+GGG | - | chr8_1:11061229-11061248 | Msa1178370:intron | 25.0% |
| ! | ACTGAACAATTCATTCTTAA+TGG | + | chr8_1:11061422-11061441 | None:intergenic | 25.0% |
| ! | ATTTCTTAACCAATGCATTT+AGG | + | chr8_1:11061546-11061565 | None:intergenic | 25.0% |
| ! | TAAGTACACTTAGATTTAGT+TGG | - | chr8_1:11061647-11061666 | Msa1178370:intron | 25.0% |
| ! | AAGTACACTTAGATTTAGTT+GGG | - | chr8_1:11061648-11061667 | Msa1178370:intron | 25.0% |
| !!! | TTTTCTTTGAAAAGCTACTT+TGG | - | chr8_1:11061879-11061898 | Msa1178370:intron | 25.0% |
| !! | TTTCTTTGAAAAGCTACTTT+GGG | - | chr8_1:11061880-11061899 | Msa1178370:intron | 25.0% |
| !!! | AATCACTTTAATTTGGACAA+AGG | + | chr8_1:11062086-11062105 | None:intergenic | 25.0% |
| ! | AAACATTTATCATATCTCAC+TGG | - | chr8_1:11062212-11062231 | Msa1178370:intron | 25.0% |
| ! | TACATGATTCCTTTCTTTAT+TGG | + | chr8_1:11062282-11062301 | None:intergenic | 25.0% |
| !! | GTCTAAGATAATTACATCAA+AGG | + | chr8_1:11062349-11062368 | None:intergenic | 25.0% |
| ! | TCTGTAAACCAAAAGAAAAA+TGG | + | chr8_1:11062389-11062408 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTTTGGTTTACAG+AGG | - | chr8_1:11062388-11062407 | Msa1178370:intron | 25.0% |
| !! | TAAGTACTTGATAGAGTATT+TGG | - | chr8_1:11062602-11062621 | Msa1178370:intron | 25.0% |
| !! | AAGTACTTGATAGAGTATTT+GGG | - | chr8_1:11062603-11062622 | Msa1178370:intron | 25.0% |
| ! | TGAACATGTCTTAAATTGTT+TGG | + | chr8_1:11062642-11062661 | None:intergenic | 25.0% |
| !! | ACTATTTTCATGTAAGCTAT+AGG | + | chr8_1:11062718-11062737 | None:intergenic | 25.0% |
| ! | AAAAAAACATATTTGAGGAG+AGG | + | chr8_1:11062948-11062967 | None:intergenic | 25.0% |
| !! | TTTGGAATATTGATAACATG+AGG | - | chr8_1:11063159-11063178 | Msa1178370:intron | 25.0% |
| !! | TTGGAATATTGATAACATGA+GGG | - | chr8_1:11063160-11063179 | Msa1178370:intron | 25.0% |
| !! | CACAAAAATCCCTAAATTTT+AGG | + | chr8_1:11063344-11063363 | None:intergenic | 25.0% |
| !! | GATTTTTGTGTTATCTTTAC+AGG | - | chr8_1:11063354-11063373 | Msa1178370:intron | 25.0% |
| ! | CTATAAATTGTGATGTATGT+TGG | - | chr8_1:11063529-11063548 | Msa1178370:intron | 25.0% |
| !! | GATAATGCACATCTTTTTAA+AGG | - | chr8_1:11063563-11063582 | Msa1178370:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | chr8_1:11063985-11064004 | Msa1178370:intron | 25.0% |
| !!! | AAACTGTTCTAAGAGATTAA+TGG | + | chr8_1:11064162-11064181 | None:intergenic | 25.0% |
| !! | AAAAGAACATTTTCTGACAT+TGG | + | chr8_1:11064586-11064605 | None:intergenic | 25.0% |
| ! | ATGAAAGGAAATTTAGAAGT+AGG | + | chr8_1:11064725-11064744 | None:intergenic | 25.0% |
| AGCAAGAAAGAAGAAGTTTA+AGG | + | chr8_1:11060287-11060306 | None:intergenic | 30.0% | |
| ! | GCTCTCAATTTTGTAGAAAA+TGG | - | chr8_1:11060952-11060971 | Msa1178370:intron | 30.0% |
| AGCATTTGGAAAATTCATGA+GGG | + | chr8_1:11061134-11061153 | None:intergenic | 30.0% | |
| AAGCATTTGGAAAATTCATG+AGG | + | chr8_1:11061135-11061154 | None:intergenic | 30.0% | |
| ! | GAAGATATGAACAAAGCATT+TGG | + | chr8_1:11061148-11061167 | None:intergenic | 30.0% |
| TGACATATTAAATATGGGGT+AGG | - | chr8_1:11061233-11061252 | Msa1178370:intron | 30.0% | |
| GACATATTAAATATGGGGTA+GGG | - | chr8_1:11061234-11061253 | Msa1178370:intron | 30.0% | |
| ! | CTCAAGTGAAAAAAGAGTAT+CGG | - | chr8_1:11061671-11061690 | Msa1178370:intron | 30.0% |
| ! | TCTTAACATTTGGTTCACAA+GGG | + | chr8_1:11061803-11061822 | None:intergenic | 30.0% |
| GTAACAAATGTATACAAGCA+CGG | + | chr8_1:11061842-11061861 | None:intergenic | 30.0% | |
| ! | TAGTGTAAGGTACCTTTATT+GGG | + | chr8_1:11061985-11062004 | None:intergenic | 30.0% |
| ACTTGTTTCATAACCATCAA+AGG | - | chr8_1:11062541-11062560 | Msa1178370:intron | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | - | chr8_1:11062577-11062596 | Msa1178370:intron | 30.0% | |
| ! | ACTTTATTTCCAAAAACTCG+AGG | - | chr8_1:11062675-11062694 | Msa1178370:intron | 30.0% |
| ! | ATAAGTTATCCTCGAGTTTT+TGG | + | chr8_1:11062687-11062706 | None:intergenic | 30.0% |
| ATATTGCTCTTGCAGAAATA+GGG | - | chr8_1:11062983-11063002 | Msa1178370:intron | 30.0% | |
| GAAAAGGTTATCTAATGTGA+AGG | - | chr8_1:11063011-11063030 | Msa1178370:intron | 30.0% | |
| TTCTTACTTATTCTCTGCTT+TGG | + | chr8_1:11063058-11063077 | None:intergenic | 30.0% | |
| ! | TGATACTTTAAGAGTCTGTT+TGG | + | chr8_1:11063290-11063309 | None:intergenic | 30.0% |
| AGCTCAACTAAGAAAAATTG+AGG | - | chr8_1:11063436-11063455 | Msa1178370:intron | 30.0% | |
| AAAGATGTGCATTATCTGTT+TGG | + | chr8_1:11063559-11063578 | None:intergenic | 30.0% | |
| TCATATTCTTACCAGACATT+TGG | - | chr8_1:11063732-11063751 | Msa1178370:intron | 30.0% | |
| CAAGACAATAATTGGATTGA+AGG | + | chr8_1:11063760-11063779 | None:intergenic | 30.0% | |
| GACAAAAGCAAGACAATAAT+TGG | + | chr8_1:11063768-11063787 | None:intergenic | 30.0% | |
| ! | ATTCAATATATGGACTGCAT+AGG | + | chr8_1:11063811-11063830 | None:intergenic | 30.0% |
| CTGAAAACGCTAATATTGAT+AGG | - | chr8_1:11064112-11064131 | Msa1178370:intron | 30.0% | |
| AAACGCTAATATTGATAGGT+CGG | - | chr8_1:11064116-11064135 | Msa1178370:intron | 30.0% | |
| ! | AAATTTTTGAACACTTTGGC+AGG | - | chr8_1:11064203-11064222 | Msa1178370:intron | 30.0% |
| GAGAAAAAGAAAGCAGAATA+TGG | - | chr8_1:11064234-11064253 | Msa1178370:intron | 30.0% | |
| !! | CATCATATTAAAAGCATCCA+AGG | + | chr8_1:11064407-11064426 | None:intergenic | 30.0% |
| TGAGTGTAAAAGTTATGGAA+AGG | - | chr8_1:11064500-11064519 | Msa1178370:CDS | 30.0% | |
| GAGTGTAAAAGTTATGGAAA+GGG | - | chr8_1:11064501-11064520 | Msa1178370:CDS | 30.0% | |
| TATGGAAAGGGAAAATACAT+TGG | - | chr8_1:11064513-11064532 | Msa1178370:CDS | 30.0% | |
| TAGTGGAAAGAATCAATGAA+AGG | + | chr8_1:11064740-11064759 | None:intergenic | 30.0% | |
| TTGGTTGTGTAATAATGTAG+TGG | + | chr8_1:11064757-11064776 | None:intergenic | 30.0% | |
| AACAAAGAACTTGTGTTGTG+TGG | + | chr8_1:11060205-11060224 | None:intergenic | 35.0% | |
| ! | ACATTTTGTGTCTGAACCTA+TGG | - | chr8_1:11060316-11060335 | Msa1178370:three_prime_UTR | 35.0% |
| ! | TTTTCAACAACATTAACCGG+TGG | + | chr8_1:11060446-11060465 | None:intergenic | 35.0% |
| ! | GTTTCATAGGGTGATAGTTT+TGG | - | chr8_1:11060619-11060638 | Msa1178370:CDS | 35.0% |
| TCTTCAATCAGTGATTCGTT+AGG | - | chr8_1:11061163-11061182 | Msa1178370:intron | 35.0% | |
| TTTCTTTGCCTTGCAAAAGT+TGG | - | chr8_1:11061266-11061285 | Msa1178370:intron | 35.0% | |
| AAAGGGTTTAACCATCCAAT+AGG | - | chr8_1:11061376-11061395 | Msa1178370:intron | 35.0% | |
| AAGGGTTTAACCATCCAATA+GGG | - | chr8_1:11061377-11061396 | Msa1178370:intron | 35.0% | |
| GATTGAACTCTAGATTACTG+TGG | - | chr8_1:11061770-11061789 | Msa1178370:intron | 35.0% | |
| ! | GTCTTAACATTTGGTTCACA+AGG | + | chr8_1:11061804-11061823 | None:intergenic | 35.0% |
| ! | AGTGTAAGGTACCTTTATTG+GGG | + | chr8_1:11061984-11062003 | None:intergenic | 35.0% |
| ! | CTAGTGTAAGGTACCTTTAT+TGG | + | chr8_1:11061986-11062005 | None:intergenic | 35.0% |
| !!! | GCATTCTTTTTTACAGGTTC+TGG | + | chr8_1:11062416-11062435 | None:intergenic | 35.0% |
| !!! | AGGGATGCATTCTTTTTTAC+AGG | + | chr8_1:11062422-11062441 | None:intergenic | 35.0% |
| ACAAGACTAACCTCTATCAA+GGG | + | chr8_1:11062441-11062460 | None:intergenic | 35.0% | |
| AACAAGACTAACCTCTATCA+AGG | + | chr8_1:11062442-11062461 | None:intergenic | 35.0% | |
| ATAACCATCAAAGGTCTATC+TGG | - | chr8_1:11062550-11062569 | Msa1178370:intron | 35.0% | |
| TCACAATTCTCTATCTTCCT+TGG | - | chr8_1:11062879-11062898 | Msa1178370:intron | 35.0% | |
| AGCACATATTCATGTTACCA+AGG | + | chr8_1:11062899-11062918 | None:intergenic | 35.0% | |
| GATATTGCTCTTGCAGAAAT+AGG | - | chr8_1:11062982-11063001 | Msa1178370:intron | 35.0% | |
| CAGAAATAGGGAAAGAGAAA+AGG | - | chr8_1:11062995-11063014 | Msa1178370:intron | 35.0% | |
| ! | GTTATCTAATGTGAAGGCAT+GGG | - | chr8_1:11063017-11063036 | Msa1178370:intron | 35.0% |
| TATTAATGATGTCAGCGTGT+CGG | + | chr8_1:11063946-11063965 | None:intergenic | 35.0% | |
| TCAACATTGTCAGTTGAGTT+AGG | + | chr8_1:11064086-11064105 | None:intergenic | 35.0% | |
| AAGAGATTAATGGCGAAACT+CGG | + | chr8_1:11064152-11064171 | None:intergenic | 35.0% | |
| TGGTGAGAAAATCAAGAACA+AGG | - | chr8_1:11064254-11064273 | Msa1178370:intron | 35.0% | |
| TGAGAAAATCAAGAACAAGG+TGG | - | chr8_1:11064257-11064276 | Msa1178370:intron | 35.0% | |
| GTGTGTGAGTGTAAAAGTTA+TGG | - | chr8_1:11064495-11064514 | Msa1178370:CDS | 35.0% | |
| AATACATTGGAGGAACATGT+TGG | - | chr8_1:11064526-11064545 | Msa1178370:CDS | 35.0% | |
| TGTTGTTGAAAAGAAAGCGG+CGG | - | chr8_1:11060454-11060473 | Msa1178370:three_prime_UTR | 40.0% | |
| ! | GAGTCAAACCAACTTTTGCA+AGG | + | chr8_1:11061277-11061296 | None:intergenic | 40.0% |
| ATTAACCATGTGAGCCCTAT+TGG | + | chr8_1:11061394-11061413 | None:intergenic | 40.0% | |
| TTGTTCCAGGAATCGAATTC+AGG | + | chr8_1:11061449-11061468 | None:intergenic | 40.0% | |
| !! | GTTTAGCTCTGAATTGTTCC+AGG | + | chr8_1:11061462-11061481 | None:intergenic | 40.0% |
| ! | GGTCATGGTAATCTAGAGTT+CGG | + | chr8_1:11061501-11061520 | None:intergenic | 40.0% |
| ! | TGTAAGGTACCTTTATTGGG+GGG | + | chr8_1:11061982-11062001 | None:intergenic | 40.0% |
| ! | GTGTAAGGTACCTTTATTGG+GGG | + | chr8_1:11061983-11062002 | None:intergenic | 40.0% |
| ! | AAGGTACCTTACACTAGACT+TGG | - | chr8_1:11061989-11062008 | Msa1178370:intron | 40.0% |
| AGGTACCTTACACTAGACTT+GGG | - | chr8_1:11061990-11062009 | Msa1178370:intron | 40.0% | |
| AGTTTCCCAAGTCTAGTGTA+AGG | + | chr8_1:11061998-11062017 | None:intergenic | 40.0% | |
| ACCTGTCATTGCAACATAGT+GGG | + | chr8_1:11062144-11062163 | None:intergenic | 40.0% | |
| AAGAATGCATCCCTTGATAG+AGG | - | chr8_1:11062428-11062447 | Msa1178370:intron | 40.0% | |
| CAATCCAGATAGACCTTTGA+TGG | + | chr8_1:11062557-11062576 | None:intergenic | 40.0% | |
| CACAGTGCTAATATATGCCT+AGG | - | chr8_1:11062846-11062865 | Msa1178370:intron | 40.0% | |
| ATTGTGACAGCAAGAAACCT+AGG | + | chr8_1:11062866-11062885 | None:intergenic | 40.0% | |
| TTGAGGAGAGGTTTCATAAG+AGG | + | chr8_1:11062936-11062955 | None:intergenic | 40.0% | |
| GGTTATCTAATGTGAAGGCA+TGG | - | chr8_1:11063016-11063035 | Msa1178370:intron | 40.0% | |
| GATGTGCATTATCTGTTTGG+TGG | + | chr8_1:11063556-11063575 | None:intergenic | 40.0% | |
| GATTGAAGGTTCCAAATGTC+TGG | + | chr8_1:11063746-11063765 | None:intergenic | 40.0% | |
| GTTGAGTTAGGTATGAAGCA+CGG | + | chr8_1:11064074-11064093 | None:intergenic | 40.0% | |
| AATCAAGAACAAGGTGGCAA+TGG | - | chr8_1:11064263-11064282 | Msa1178370:intron | 40.0% | |
| AATGGTTCACAAACAAGCAG+AGG | - | chr8_1:11064281-11064300 | Msa1178370:intron | 40.0% | |
| GCTGCAAAACATAATGCAAC+AGG | - | chr8_1:11064363-11064382 | Msa1178370:intron | 40.0% | |
| ACAGTTCCAAAGAAACTCCT+TGG | - | chr8_1:11064387-11064406 | Msa1178370:intron | 40.0% | |
| AAGCATCCAAGGAGTTTCTT+TGG | + | chr8_1:11064396-11064415 | None:intergenic | 40.0% | |
| GGAAAGGGAAAATACATTGG+AGG | - | chr8_1:11064516-11064535 | Msa1178370:CDS | 40.0% | |
| !! | TTGGTTTGGAGTTCAGCCAT+AGG | + | chr8_1:11060335-11060354 | None:intergenic | 45.0% |
| GAACTGCTTCTTGCTTGGTT+TGG | + | chr8_1:11060349-11060368 | None:intergenic | 45.0% | |
| TTTGTGTCATCTGCTACAGG+TGG | + | chr8_1:11060485-11060504 | None:intergenic | 45.0% | |
| ACCTGTAGCAGATGACACAA+AGG | - | chr8_1:11060484-11060503 | Msa1178370:three_prime_UTR | 45.0% | |
| !! | CACAAAGGCACTTGTTGTTG+TGG | - | chr8_1:11060499-11060518 | Msa1178370:three_prime_UTR | 45.0% |
| TCGAACCTGAATTCGATTCC+TGG | - | chr8_1:11061441-11061460 | Msa1178370:intron | 45.0% | |
| ! | TAATCTAGAGTTCGGTCAGG+AGG | + | chr8_1:11061493-11061512 | None:intergenic | 45.0% |
| ! | TGGTAATCTAGAGTTCGGTC+AGG | + | chr8_1:11061496-11061515 | None:intergenic | 45.0% |
| ATGACCCCTTTCCTTAGAAC+CGG | - | chr8_1:11061515-11061534 | Msa1178370:CDS | 45.0% | |
| ! | TTTGGGACCAGTGTGTCAAA+AGG | - | chr8_1:11061897-11061916 | Msa1178370:CDS | 45.0% |
| ! | TCTCTCACCTTTTGACACAC+TGG | + | chr8_1:11061907-11061926 | None:intergenic | 45.0% |
| CCTTTATTGGGGGGGATTTA+TGG | + | chr8_1:11061973-11061992 | None:intergenic | 45.0% | |
| CCATAAATCCCCCCCAATAA+AGG | - | chr8_1:11061970-11061989 | Msa1178370:intron | 45.0% | |
| ! | GTAAGGTACCTTTATTGGGG+GGG | + | chr8_1:11061981-11062000 | None:intergenic | 45.0% |
| TCCCACTATGTTGCAATGAC+AGG | - | chr8_1:11062140-11062159 | Msa1178370:intron | 45.0% | |
| GACCTGTCATTGCAACATAG+TGG | + | chr8_1:11062145-11062164 | None:intergenic | 45.0% | |
| ACCTAACTCCCTATGAAGCA+CGG | - | chr8_1:11063893-11063912 | Msa1178370:intron | 45.0% | |
| ACACGACACATGTCTGATAC+CGG | - | chr8_1:11064025-11064044 | Msa1178370:intron | 45.0% | |
| TAATGGCGAAACTCGGATGA+AGG | + | chr8_1:11064145-11064164 | None:intergenic | 45.0% | |
| AACACTTTGGCAGGAGCAAT+TGG | - | chr8_1:11064212-11064231 | Msa1178370:intron | 45.0% | |
| ACGTGCTGAAGCAATTCTCA+AGG | - | chr8_1:11064329-11064348 | Msa1178370:intron | 45.0% | |
| TGAAGCAATTCTCAAGGCAG+AGG | - | chr8_1:11064335-11064354 | Msa1178370:intron | 45.0% | |
| AGCAGGAACTGCTTCTTGCT+TGG | + | chr8_1:11060354-11060373 | None:intergenic | 50.0% | |
| GCCTTTGTGTCATCTGCTAC+AGG | + | chr8_1:11060488-11060507 | None:intergenic | 50.0% | |
| ACCATCCAATAGGGCTCACA+TGG | - | chr8_1:11061386-11061405 | Msa1178370:intron | 50.0% | |
| ACCATGTGAGCCCTATTGGA+TGG | + | chr8_1:11061390-11061409 | None:intergenic | 50.0% | |
| !! | GGTTCTAAGGAAAGGGGTCA+TGG | + | chr8_1:11061516-11061535 | None:intergenic | 50.0% |
| !! | CACTCCGGTTCTAAGGAAAG+GGG | + | chr8_1:11061522-11061541 | None:intergenic | 50.0% |
| !! | CCACTCCGGTTCTAAGGAAA+GGG | + | chr8_1:11061523-11061542 | None:intergenic | 50.0% |
| TTTAGGCCACTCCGGTTCTA+AGG | + | chr8_1:11061529-11061548 | None:intergenic | 50.0% | |
| CCAATGCATTTAGGCCACTC+CGG | + | chr8_1:11061537-11061556 | None:intergenic | 50.0% | |
| ATTGGGGGGGATTTATGGTG+AGG | + | chr8_1:11061968-11061987 | None:intergenic | 50.0% | |
| AGCTCTCTACTGTTGCTGCT+TGG | - | chr8_1:11063387-11063406 | Msa1178370:intron | 50.0% | |
| ! | GCTCTCTACTGTTGCTGCTT+GGG | - | chr8_1:11063388-11063407 | Msa1178370:intron | 50.0% |
| TCCGTGCTTCATAGGGAGTT+AGG | + | chr8_1:11063897-11063916 | None:intergenic | 50.0% | |
| CTCCCTATGAAGCACGGATA+CGG | - | chr8_1:11063899-11063918 | Msa1178370:intron | 50.0% | |
| GTCCGTATCCGTGCTTCATA+GGG | + | chr8_1:11063904-11063923 | None:intergenic | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | + | chr8_1:11063905-11063924 | None:intergenic | 50.0% | |
| CACGACACATGTCTGATACC+GGG | - | chr8_1:11064026-11064045 | Msa1178370:intron | 50.0% | |
| GAACATGTTGGACAGCAGAG+AGG | - | chr8_1:11064538-11064557 | Msa1178370:CDS | 50.0% | |
| TGGACAGCAGAGAGGATCTT+TGG | - | chr8_1:11064546-11064565 | Msa1178370:CDS | 50.0% | |
| GTGTCATCTGCTACAGGTGG+CGG | + | chr8_1:11060482-11060501 | None:intergenic | 55.0% | |
| CCCTTTCCTTAGAACCGGAG+TGG | - | chr8_1:11061520-11061539 | Msa1178370:CDS | 55.0% | |
| !! | GCCACTCCGGTTCTAAGGAA+AGG | + | chr8_1:11061524-11061543 | None:intergenic | 55.0% |
| CCGGAGTGGCCTAAATGCAT+TGG | - | chr8_1:11061534-11061553 | Msa1178370:CDS | 55.0% | |
| TCCTAGGATTAGGCGTGTCC+CGG | + | chr8_1:11064047-11064066 | None:intergenic | 55.0% | |
| TATGAAGCACGGACGCTCCT+AGG | + | chr8_1:11064063-11064082 | None:intergenic | 55.0% | |
| AGCAGTTCCTGCTCCTGCTC+CGG | - | chr8_1:11060361-11060380 | Msa1178370:three_prime_UTR | 60.0% | |
| GCAGGAGCTGGAGTTGGAAC+CGG | + | chr8_1:11060395-11060414 | None:intergenic | 60.0% | |
| TCCAACTCCAGCTCCTGCTG+CGG | - | chr8_1:11060397-11060416 | Msa1178370:three_prime_UTR | 60.0% | |
| GGTTGAGCCACCTCTAGCTG+AGG | - | chr8_1:11060418-11060437 | Msa1178370:three_prime_UTR | 60.0% | |
| ACCTCTAGCTGAGGCTCCAC+CGG | - | chr8_1:11060427-11060446 | Msa1178370:three_prime_UTR | 60.0% | |
| ACCGGGACACGCCTAATCCT+AGG | - | chr8_1:11064043-11064062 | Msa1178370:intron | 60.0% | |
| GCACGGACGCTCCTAGGATT+AGG | + | chr8_1:11064057-11064076 | None:intergenic | 60.0% | |
| GCTGGAGTTGGAACCGGTGC+CGG | + | chr8_1:11060389-11060408 | None:intergenic | 65.0% | |
| ACCGCAGCAGGAGCTGGAGT+TGG | + | chr8_1:11060401-11060420 | None:intergenic | 65.0% | |
| AGAGGTGGCTCAACCGCAGC+AGG | + | chr8_1:11060413-11060432 | None:intergenic | 65.0% | |
| GGTGGAGCCTCAGCTAGAGG+TGG | + | chr8_1:11060428-11060447 | None:intergenic | 65.0% | |
| ACCGGTGGAGCCTCAGCTAG+AGG | + | chr8_1:11060431-11060450 | None:intergenic | 65.0% | |
| TCCTGCTCCTGCTCCGGCAC+CGG | - | chr8_1:11060367-11060386 | Msa1178370:three_prime_UTR | 70.0% | |
| !! | GTTGGAACCGGTGCCGGTGC+CGG | + | chr8_1:11060383-11060402 | None:intergenic | 70.0% |
| GGCTCAACCGCAGCAGGAGC+TGG | + | chr8_1:11060407-11060426 | None:intergenic | 70.0% | |
| !! | TCCTGCTCCGGCACCGGCAC+CGG | - | chr8_1:11060373-11060392 | Msa1178370:three_prime_UTR | 75.0% |
| !! | GCCGGTGCCGGAGCAGGAGC+AGG | + | chr8_1:11060371-11060390 | None:intergenic | 80.0% |
| !!! | ACCGGTGCCGGTGCCGGAGC+AGG | + | chr8_1:11060377-11060396 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 11060177 | 11064782 | 11060177 | ID=Msa1178370;Name=Msa1178370 |
| chr8_1 | mRNA | 11060177 | 11064782 | 11060177 | ID=Msa1178370-mRNA-1;Parent=Msa1178370;Name=Msa1178370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=158|1|1|1|1|1|5|363|200 |
| chr8_1 | exon | 11060177 | 11060734 | 11060177 | ID=Msa1178370-mRNA-1:exon:3898;Parent=Msa1178370-mRNA-1 |
| chr8_1 | exon | 11061502 | 11061583 | 11061502 | ID=Msa1178370-mRNA-1:exon:3897;Parent=Msa1178370-mRNA-1 |
| chr8_1 | exon | 11061889 | 11061976 | 11061889 | ID=Msa1178370-mRNA-1:exon:3896;Parent=Msa1178370-mRNA-1 |
| chr8_1 | exon | 11062510 | 11062551 | 11062510 | ID=Msa1178370-mRNA-1:exon:3895;Parent=Msa1178370-mRNA-1 |
| chr8_1 | exon | 11064429 | 11064782 | 11064429 | ID=Msa1178370-mRNA-1:exon:3894;Parent=Msa1178370-mRNA-1 |
| chr8_1 | five_prime_UTR | 11064625 | 11064782 | 11064625 | ID=Msa1178370-mRNA-1:five_prime_utr;Parent=Msa1178370-mRNA-1 |
| chr8_1 | CDS | 11064429 | 11064624 | 11064429 | ID=Msa1178370-mRNA-1:cds;Parent=Msa1178370-mRNA-1 |
| chr8_1 | CDS | 11062510 | 11062551 | 11062510 | ID=Msa1178370-mRNA-1:cds;Parent=Msa1178370-mRNA-1 |
| chr8_1 | CDS | 11061889 | 11061976 | 11061889 | ID=Msa1178370-mRNA-1:cds;Parent=Msa1178370-mRNA-1 |
| chr8_1 | CDS | 11061502 | 11061583 | 11061502 | ID=Msa1178370-mRNA-1:cds;Parent=Msa1178370-mRNA-1 |
| chr8_1 | CDS | 11060540 | 11060734 | 11060540 | ID=Msa1178370-mRNA-1:cds;Parent=Msa1178370-mRNA-1 |
| chr8_1 | three_prime_UTR | 11060177 | 11060539 | 11060177 | ID=Msa1178370-mRNA-1:three_prime_utr;Parent=Msa1178370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
