AlfalfaGEDB | Msa0277470

M. sativa cultivar zhongmu-4 / Msa0277470

KEGG: K11314
GO: GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252
PFAM: PF00569.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0277470	XP_003594266.1	96.733	551	17	1	1	551	1	550	0.0	1106

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0277470	sp\|Q75LL6\|TADA2_ORYSJ	58.639	573	195	7	1	547	1	557	0.0	639

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0277470	G7IPA7	96.733	551	17	1	1	551	1	550	0.0	1106

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TFs/TRs:

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Gene ID	Type	Classification
Msa0277470	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0277470	Msa0632730	0.801452	8.943240e-49	-8.615850e-47
Msa0277470	Msa0681250	0.807796	4.243947e-50	-8.615850e-47
Msa0277470	Msa0749290	0.807614	4.637664e-50	-8.615850e-47
Msa0277470	Msa1386730	0.995378	1.132743e-215	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0277470	MtrunA17_Chr2g0290321	96.733	551	17	1	1	551	1	550	0.0	1106
Msa0277470	MtrunA17_Chr2g0290341	66.357	538	103	4	38	551	22	505	0.0	708
Msa0277470	MtrunA17_Chr7g0239471	70.149	536	90	6	19	551	18	486	0.0	696
Msa0277470	MtrunA17_Chr3g0120841	52.518	556	226	8	18	549	20	561	0.0	543
Msa0277470	MtrunA17_Chr3g0120231	72.596	208	56	1	344	551	2	208	2.16e-100	302
Msa0277470	MtrunA17_Chr3g0120201	52.471	263	121	2	287	549	4	262	2.61e-88	273
Msa0277470	MtrunA17_Chr3g0120221	60.494	162	62	1	19	178	16	177	6.82e-67	215
Msa0277470	MtrunA17_Chr7g0238851	83.750	80	13	0	17	96	2	81	1.60e-36	131
Msa0277470	MtrunA17_Chr3g0120191	63.095	84	30	1	108	191	11	93	1.03e-30	115
Msa0277470	MtrunA17_Chr3g0120181	74.138	58	15	0	39	96	2	59	1.09e-27	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0277470	AT4G16420.2	58.993	556	151	10	1	552	1	483	0.0	632
Msa0277470	AT4G16420.1	58.750	560	150	11	1	552	1	487	0.0	628
Msa0277470	AT4G16420.3	58.497	559	152	10	1	552	1	486	0.0	627
Msa0277470	AT3G07740.1	46.516	574	254	11	1	550	1	545	4.71e-160	468
Msa0277470	AT3G07740.3	47.770	538	230	9	35	550	16	524	8.49e-158	461
Msa0277470	AT3G07740.4	45.955	581	254	12	1	550	1	552	2.97e-157	461
Msa0277470	AT3G07740.2	47.410	502	214	8	70	550	2	474	2.80e-143	422

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Find 157 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCATCCAATAAAGGG+CGG	0.652819	2_3:+10064532	Msa0277470:CDS
AAAATCACGATTCAAGAAAA+GGG	0.482625	2_3:-10061416	None:intergenic
AAAATTGCGACAAAGAAACG+AGG	0.747996	2_3:-10061298	None:intergenic
AAAGCCTGACATACCGGAAG+AGG	0.510365	2_3:-10063671	None:intergenic
AAAGGCATCCAATAAAGGGC+GGG	0.512200	2_3:+10064533	Msa0277470:CDS
AAATCCTTCTCAAATGGATT+TGG	0.279560	2_3:-10065114	None:intergenic
AAATGTATGGCATGGGAAAC+TGG	0.255134	2_3:+10063561	Msa0277470:CDS
AACAAACTCAAATTCATTGA+GGG	0.439595	2_3:+10061446	Msa0277470:five_prime_UTR
AACCAAAAGGCATCCAATAA+AGG	0.306706	2_3:+10064528	Msa0277470:CDS
AACGTTTGTGCTGCGAGTTA+AGG	0.442285	2_3:+10065717	Msa0277470:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTGAAACTAGTTGAGTTT+GGG	-	chr2_3:10061262-10061281	None:intergenic	30.0%
TTTGTGAAACTAGTTGAGTT+TGG	-	chr2_3:10061263-10061282	None:intergenic	30.0%
CAACAAACTCAAATTCATTG+AGG	+	chr2_3:10061445-10061464	Msa0277470:five_prime_UTR	30.0%
GTTTCACTCAGAAATTCAAT+GGG	+	chr2_3:10061468-10061487	Msa0277470:exon	30.0%
TAAAAATCAAACCTTTGGCT+TGG	-	chr2_3:10061531-10061550	None:intergenic	30.0%
TTTCAACTGTATGTATGTGT+AGG	+	chr2_3:10061672-10061691	Msa0277470:intron	30.0%
AGCTACAAATTGTCAAATTG+TGG	-	chr2_3:10062177-10062196	None:intergenic	30.0%
ATACACATTAAGTGCTTGTT+CGG	-	chr2_3:10062259-10062278	None:intergenic	30.0%
CATCAACTTATTCAGTCATA+CGG	-	chr2_3:10062476-10062495	None:intergenic	30.0%
TTATTCAAACAAACACTCCA+CGG	-	chr2_3:10062520-10062539	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	10061208	10066177	10061208	ID=Msa0277470;Name=Msa0277470
chr2_3	mRNA	10061208	10066177	10061208	ID=Msa0277470-mRNA-1;Parent=Msa0277470;Name=Msa0277470-mRNA-1;_AED=0.08;_eAED=0.08;_QI=278\|1\|1\|1\|1\|1\|13\|270\|552
chr2_3	exon	10061208	10061538	10061208	ID=Msa0277470-mRNA-1:exon:4461;Parent=Msa0277470-mRNA-1
chr2_3	exon	10061694	10061749	10061694	ID=Msa0277470-mRNA-1:exon:4462;Parent=Msa0277470-mRNA-1
chr2_3	exon	10062689	10062867	10062689	ID=Msa0277470-mRNA-1:exon:4463;Parent=Msa0277470-mRNA-1
chr2_3	exon	10063353	10063418	10063353	ID=Msa0277470-mRNA-1:exon:4464;Parent=Msa0277470-mRNA-1
chr2_3	exon	10063554	10063679	10063554	ID=Msa0277470-mRNA-1:exon:4465;Parent=Msa0277470-mRNA-1
chr2_3	exon	10063771	10063846	10063771	ID=Msa0277470-mRNA-1:exon:4466;Parent=Msa0277470-mRNA-1
chr2_3	exon	10064193	10064253	10064193	ID=Msa0277470-mRNA-1:exon:4467;Parent=Msa0277470-mRNA-1
chr2_3	exon	10064333	10064391	10064333	ID=Msa0277470-mRNA-1:exon:4468;Parent=Msa0277470-mRNA-1
chr2_3	exon	10064481	10064588	10064481	ID=Msa0277470-mRNA-1:exon:4469;Parent=Msa0277470-mRNA-1
chr2_3	exon	10064709	10064931	10064709	ID=Msa0277470-mRNA-1:exon:4470;Parent=Msa0277470-mRNA-1
chr2_3	exon	10065059	10065269	10065059	ID=Msa0277470-mRNA-1:exon:4471;Parent=Msa0277470-mRNA-1
chr2_3	exon	10065373	10065618	10065373	ID=Msa0277470-mRNA-1:exon:4472;Parent=Msa0277470-mRNA-1
chr2_3	exon	10065713	10066177	10065713	ID=Msa0277470-mRNA-1:exon:4473;Parent=Msa0277470-mRNA-1
chr2_3	five_prime_UTR	10061208	10061485	10061208	ID=Msa0277470-mRNA-1:five_prime_utr;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10061486	10061538	10061486	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10061694	10061749	10061694	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10062689	10062867	10062689	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10063353	10063418	10063353	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10063554	10063679	10063554	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10063771	10063846	10063771	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10064193	10064253	10064193	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10064333	10064391	10064333	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10064481	10064588	10064481	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10064709	10064931	10064709	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10065059	10065269	10065059	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10065373	10065618	10065373	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	CDS	10065713	10065907	10065713	ID=Msa0277470-mRNA-1:cds;Parent=Msa0277470-mRNA-1
chr2_3	three_prime_UTR	10065908	10066177	10065908	ID=Msa0277470-mRNA-1:three_prime_utr;Parent=Msa0277470-mRNA-1

Gene Sequence

>Msa0277470

ATGGGTCGTTCTCGTGGTAATTTTCATCATAACGATGATGATCCAAGCCAAAGGTCAAGGAGAAAGAAGAATGCTGCAAGTGGAGATAATTCAGAATCTGGAGTTGCAGGTCAAGGAGCAGGTGAAGCGAAAAGGGCTTTGTATCATTGCAATTACTGTAATAAAGATATTACAGGAAAAATCCGTATCAAGTGTGCTATGTGCCCAGATTTTGACTTATGTATTGAGTGCTTTTCTGTCGGAGCTGAGGTGACACCCCACAAAAGCAATCATTCTTACAGGGTCATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATAGAAATGTATGGCATGGGAAACTGGGCAGAAGTTGCTGAGCATGTTGGAACAAAGAACAAAGAAGCATGCATAGAACACTATAGGAATGTGTACTTAAACTCCCCGTTCTTCCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAGGAACTTCTTGCCATGGCGAAAGGGCAGGGTGAGGACAAGAAAGGACTTCCCATGGGAGATCTTAGCATAAAGGAAGAATCACCCTTTTCTCCATCTAGAGTCAAAATGGAAGATTCCAACAAATCTGGTTCCACTGGCCGTTTGACTTCCAATATGAATTCAGGGTCAGATTCTGGGCCCTCAGTCAACACACAGGCTGCAGCTAGTGCTAACCAAAAGGCATCCAATAAAGGGCGGGGGAAAGGTGGTCCTGGAATTGTTAAAATGGAAGATTCTCCAATGGACAGAGATTTTGGAGGAAATAAGCCAAATTCCTCAAGAAATGAAGGCCCTTCTTTGGTTGATCTCAGTGGTTATAACGCGAAAAGACAGGAATTCGATCCTGAATATGATAATGATGCTGAGCAATTACTCGCCGAAATGGAGTTTAAGGACACTGACACTGAGGAGGAGCGAGAGATCAAACTTCGTGTGCTGCGCATTTATTCAAAAAGGCTTGATGAAAGAAAGCGCAGGAAGGAATTCATACTTGAAAGAAATTTGCTTTATCCAAATCCATTTGAGAAGGATTTAACACCCGAGGAAAAGTCAATATGCCGGAAATATGACATGTTCATGCGCTTTCATACTAAGGAAGAGCACGATGAATTACTCAGAACCGTTATCTCTGAACATAGGACTCTGAAAAGAATTCAAGAGCTTAAGGAAGCTCGTGCTGCTGGTTGCCGCAGTTCAGTTGAAGCAGATAGATATCTGGCGCATAAGAGAAGAAAGGAATCTGAAGAAAGTGCTTGTAGGGCGAGAGAAAGTGCTCATGTGGTCCCGAACAATCACGGGGTTCCAAATGCATTAATGTCTCCAGACTCTGCTGGTACCAGACCTGCAGGGTCAAGTTCTGTCAATGAAATGGATGCAACTGGATACTATGGAGCAGATTTACTTTCTGAAACTGAGAAACGTTTGTGCTGCGAGTTAAGGTTGCCTCCAACCGTTTATCTGAAGATGCAAGAGGACCTATCTGTACAAATGATTGCTGGCAACGTCTCTTCAAAATCTGATGCTCATCAAATGTTCAAGAATGTGGATACCATCAAAATTGACAGGGTGTATGATATGCTCATTAAGAAGGGAATTGGTTCATTCTGA

Protein sequence

>Msa0277470

MGRSRGNFHHNDDDPSQRSRRKKNAASGDNSESGVAGQGAGEAKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHSYRVMDNLSFPLICPDWNADDEILLLEGIEMYGMGNWAEVAEHVGTKNKEACIEHYRNVYLNSPFFPLPDMSHVVGKNRKELLAMAKGQGEDKKGLPMGDLSIKEESPFSPSRVKMEDSNKSGSTGRLTSNMNSGSDSGPSVNTQAAASANQKASNKGRGKGGPGIVKMEDSPMDRDFGGNKPNSSRNEGPSLVDLSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDTEEEREIKLRVLRIYSKRLDERKRRKEFILERNLLYPNPFEKDLTPEEKSICRKYDMFMRFHTKEEHDELLRTVISEHRTLKRIQELKEARAAGCRSSVEADRYLAHKRRKESEESACRARESAHVVPNNHGVPNALMSPDSAGTRPAGSSSVNEMDATGYYGADLLSETEKRLCCELRLPPTVYLKMQEDLSVQMIAGNVSSKSDAHQMFKNVDTIKIDRVYDMLIKKGIGSF*