Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386730 | XP_003594266.1 | 96.733 | 551 | 17 | 1 | 1 | 551 | 1 | 550 | 0.0 | 1106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386730 | sp|Q75LL6|TADA2_ORYSJ | 58.639 | 573 | 195 | 7 | 1 | 547 | 1 | 557 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386730 | G7IPA7 | 96.733 | 551 | 17 | 1 | 1 | 551 | 1 | 550 | 0.0 | 1106 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1386730 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0632730 | Msa1386730 | 0.801966 | 7.017647e-49 | -8.615850e-47 |
| Msa0681250 | Msa1386730 | 0.800620 | 1.322964e-48 | -8.615850e-47 |
| Msa0749290 | Msa1386730 | 0.806861 | 6.696771e-50 | -8.615850e-47 |
| Msa0277470 | Msa1386730 | 0.995378 | 1.132743e-215 | -8.615850e-47 |
| Msa0846880 | Msa1386730 | 0.800270 | 1.559110e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386730 | MtrunA17_Chr2g0290321 | 96.733 | 551 | 17 | 1 | 1 | 551 | 1 | 550 | 0.0 | 1106 |
| Msa1386730 | MtrunA17_Chr2g0290341 | 66.357 | 538 | 103 | 4 | 38 | 551 | 22 | 505 | 0.0 | 708 |
| Msa1386730 | MtrunA17_Chr7g0239471 | 70.149 | 536 | 90 | 6 | 19 | 551 | 18 | 486 | 0.0 | 696 |
| Msa1386730 | MtrunA17_Chr3g0120841 | 52.518 | 556 | 226 | 8 | 18 | 549 | 20 | 561 | 0.0 | 543 |
| Msa1386730 | MtrunA17_Chr3g0120231 | 72.596 | 208 | 56 | 1 | 344 | 551 | 2 | 208 | 2.16e-100 | 302 |
| Msa1386730 | MtrunA17_Chr3g0120201 | 52.471 | 263 | 121 | 2 | 287 | 549 | 4 | 262 | 2.61e-88 | 273 |
| Msa1386730 | MtrunA17_Chr3g0120221 | 60.494 | 162 | 62 | 1 | 19 | 178 | 16 | 177 | 6.82e-67 | 215 |
| Msa1386730 | MtrunA17_Chr7g0238851 | 83.750 | 80 | 13 | 0 | 17 | 96 | 2 | 81 | 1.60e-36 | 131 |
| Msa1386730 | MtrunA17_Chr3g0120191 | 63.095 | 84 | 30 | 1 | 108 | 191 | 11 | 93 | 1.03e-30 | 115 |
| Msa1386730 | MtrunA17_Chr3g0120181 | 74.138 | 58 | 15 | 0 | 39 | 96 | 2 | 59 | 1.09e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386730 | AT4G16420.2 | 58.993 | 556 | 151 | 10 | 1 | 552 | 1 | 483 | 0.0 | 632 |
| Msa1386730 | AT4G16420.1 | 58.750 | 560 | 150 | 11 | 1 | 552 | 1 | 487 | 0.0 | 628 |
| Msa1386730 | AT4G16420.3 | 58.497 | 559 | 152 | 10 | 1 | 552 | 1 | 486 | 0.0 | 627 |
| Msa1386730 | AT3G07740.1 | 46.516 | 574 | 254 | 11 | 1 | 550 | 1 | 545 | 4.71e-160 | 468 |
| Msa1386730 | AT3G07740.3 | 47.770 | 538 | 230 | 9 | 35 | 550 | 16 | 524 | 8.49e-158 | 461 |
| Msa1386730 | AT3G07740.4 | 45.955 | 581 | 254 | 12 | 1 | 550 | 1 | 552 | 2.97e-157 | 461 |
| Msa1386730 | AT3G07740.2 | 47.410 | 502 | 214 | 8 | 70 | 550 | 2 | 474 | 2.80e-143 | 422 |
Find 157 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCATTTCTTGAGGAATT+TGG | 0.167298 | tig0020858:-85267 | None:intergenic |
| TCTCCAATGGACAGAGATTT+TGG | 0.183129 | tig0020858:+85234 | Msa1386730:CDS |
| TATATTGTAGGGTCAGATTC+TGG | 0.192149 | tig0020858:+84994 | Msa1386730:intron |
| ACTCGCCGAAATGGAGTTTA+AGG | 0.210601 | tig0020858:+85371 | Msa1386730:CDS |
| TTGTATCATGCTTTGGTAAT+AGG | 0.249930 | tig0020858:+86534 | Msa1386730:three_prime_UTR |
| AAATGTATGGCATGGGAAAC+TGG | 0.255134 | tig0020858:+84083 | Msa1386730:CDS |
| TTGACTTCCAATATGAATTC+AGG | 0.266313 | tig0020858:+84893 | Msa1386730:CDS |
| AAATCCTTCTCAAATGGATT+TGG | 0.279560 | tig0020858:-85637 | None:intergenic |
| TCAATACATAAGTCAAAATC+TGG | 0.298397 | tig0020858:-83306 | None:intergenic |
| GCATGAACATGTCATATTTC+CGG | 0.301157 | tig0020858:-85684 | None:intergenic |
| TCAGCATCATTATCATATTC+AGG | 0.301408 | tig0020858:-85342 | None:intergenic |
| GAAAAGAATTCAAGAGCTTA+AGG | 0.302238 | tig0020858:+85771 | Msa1386730:CDS |
| AACCAAAAGGCATCCAATAA+AGG | 0.306706 | tig0020858:+85051 | Msa1386730:CDS |
| TGCTGCGCATTTATTCAAAA+AGG | 0.307711 | tig0020858:+85433 | Msa1386730:CDS |
| AAGAAATGAAGGCCCTTCTT+TGG | 0.309899 | tig0020858:+85278 | Msa1386730:CDS |
| GCCCTTTATTGGATGCCTTT+TGG | 0.311044 | tig0020858:-85053 | None:intergenic |
| ACAAAAGCAATCATTCTTAC+AGG | 0.313342 | tig0020858:+83361 | Msa1386730:CDS |
| TTTGGGTTGCTGAGTGTAAC+TGG | 0.327176 | tig0020858:-81764 | None:intergenic |
| TGGTCCTGGAATTGTTAAAA+TGG | 0.329731 | tig0020858:+85086 | Msa1386730:CDS |
| TTTGGAACCCCGTGATTGTT+CGG | 0.334438 | tig0020858:-86013 | None:intergenic |
| CTCCCCGTTCTTCCCTCTTC+CGG | 0.336302 | tig0020858:+84180 | Msa1386730:CDS |
| TTTGTGAAACTAGTTGAGTT+TGG | 0.337742 | tig0020858:-81782 | None:intergenic |
| AACTGGATTTCGTTCAGTTT+GGG | 0.346273 | tig0020858:-81747 | None:intergenic |
| TCTGGAGACATTAATGCATT+TGG | 0.356050 | tig0020858:-86031 | None:intergenic |
| TCATCATCTGCATTCCAGTC+TGG | 0.356882 | tig0020858:-83902 | None:intergenic |
| TAACTGGATTTCGTTCAGTT+TGG | 0.360203 | tig0020858:-81748 | None:intergenic |
| TTGGAACCCCGTGATTGTTC+GGG | 0.365263 | tig0020858:-86012 | None:intergenic |
| TCCCTCTTATTTGCCCAGAC+TGG | 0.378865 | tig0020858:+83888 | Msa1386730:CDS |
| CACTCCACGGTGGATTAAAA+AGG | 0.381678 | tig0020858:-86612 | None:intergenic |
| TAGCTTACCTGAATTCATAT+TGG | 0.383727 | tig0020858:-84900 | None:intergenic |
| ATGCTCATTAAGAAGGGAAT+TGG | 0.386721 | tig0020858:+86398 | Msa1386730:CDS |
| CAGCCTTACTTGACTCTAGA+TGG | 0.387712 | tig0020858:-84763 | None:intergenic |
| ATGGATGCAACTGGATACTA+TGG | 0.389391 | tig0020858:+86097 | Msa1386730:CDS |
| CTCTTGCATCTTCAGATAAA+CGG | 0.389633 | tig0020858:-86273 | None:intergenic |
| TAAAATCACGATTCAAGAAA+AGG | 0.390955 | tig0020858:-81939 | None:intergenic |
| TTAAGTGTTGTATCATGCTT+TGG | 0.395396 | tig0020858:+86527 | Msa1386730:three_prime_UTR |
| GTCAAGTTCTGTCAATGAAA+TGG | 0.399893 | tig0020858:+86078 | Msa1386730:CDS |
| ACAAAGAAACGAGGATGTTT+CGG | 0.403693 | tig0020858:-81811 | None:intergenic |
| GGTGTTAAATCCTTCTCAAA+TGG | 0.404781 | tig0020858:-85643 | None:intergenic |
| AGTGGAGATAATTCAGAATC+TGG | 0.407331 | tig0020858:+82241 | Msa1386730:CDS |
| TTGTGAAACTAGTTGAGTTT+GGG | 0.415835 | tig0020858:-81781 | None:intergenic |
| TACTGTAATAAAGATATTAC+AGG | 0.419202 | tig0020858:+83255 | Msa1386730:CDS |
| TAGGACATGTCTCATGTTGT+TGG | 0.423324 | tig0020858:+84290 | Msa1386730:intron |
| ATACCGGAAGAGGGAAGAAC+GGG | 0.423481 | tig0020858:-84183 | None:intergenic |
| ATGGAAGATTCCAACAAATC+TGG | 0.423508 | tig0020858:+84857 | Msa1386730:CDS |
| AATTCAGAATCTGGAGTTGC+AGG | 0.426709 | tig0020858:+82250 | Msa1386730:CDS |
| GCCAGTGGAACCAGATTTGT+TGG | 0.430345 | tig0020858:-84867 | None:intergenic |
| AACAAACTCAAATTCATTGA+GGG | 0.439595 | tig0020858:+81968 | Msa1386730:five_prime_UTR |
| AGAACTTGACCCTGCAGGTC+TGG | 0.440690 | tig0020858:-86065 | None:intergenic |
| AACGTTTGTGCTGCGAGTTA+AGG | 0.442285 | tig0020858:+86240 | Msa1386730:CDS |
| ATATTGTAGGGTCAGATTCT+GGG | 0.444203 | tig0020858:+84995 | Msa1386730:intron |
| CTTGACTCTAGATGGAGAAA+AGG | 0.444237 | tig0020858:-84755 | None:intergenic |
| AAGCATGCATAGAACACTAT+AGG | 0.446368 | tig0020858:+84143 | Msa1386730:CDS |
| GTCAATGAAATGGATGCAAC+TGG | 0.450262 | tig0020858:+86088 | Msa1386730:CDS |
| CAACAAACTCAAATTCATTG+AGG | 0.450908 | tig0020858:+81967 | Msa1386730:five_prime_UTR |
| CATCATCTGCATTCCAGTCT+GGG | 0.453025 | tig0020858:-83901 | None:intergenic |
| TTCCAGTCTGGGCAAATAAG+AGG | 0.454161 | tig0020858:-83890 | None:intergenic |
| GGTCTGGTACCAGCAGAGTC+TGG | 0.454618 | tig0020858:-86049 | None:intergenic |
| GTTCATGCGCTTTCATACTA+AGG | 0.455273 | tig0020858:+85699 | Msa1386730:CDS |
| GGTTTCACTCAGAAATTCAA+TGG | 0.455769 | tig0020858:+81989 | Msa1386730:exon |
| CATGGGAGATCTTAGCATAA+AGG | 0.456713 | tig0020858:+84723 | Msa1386730:CDS |
| CTATCTGTACAAATGATTGC+TGG | 0.459385 | tig0020858:+86299 | Msa1386730:CDS |
| AATCTGAAGAAAGTGCTTGT+AGG | 0.463870 | tig0020858:+85966 | Msa1386730:CDS |
| AGTGTCCTTAAACTCCATTT+CGG | 0.467485 | tig0020858:-85376 | None:intergenic |
| ACCAAAAGGCATCCAATAAA+GGG | 0.468979 | tig0020858:+85052 | Msa1386730:CDS |
| TCTTGCCATGGCGAAAGGGC+AGG | 0.472164 | tig0020858:+84331 | Msa1386730:CDS |
| ATGTGGTCCCGAACAATCAC+GGG | 0.473554 | tig0020858:+86005 | Msa1386730:CDS |
| CCTCCAAAATCTCTGTCCAT+TGG | 0.475110 | tig0020858:-85237 | None:intergenic |
| AAAATCACGATTCAAGAAAA+GGG | 0.482625 | tig0020858:-81938 | None:intergenic |
| CAGCAATCATTTGTACAGAT+AGG | 0.483057 | tig0020858:-86298 | None:intergenic |
| TGGATACCATCAAAATTGAC+AGG | 0.484436 | tig0020858:+86366 | Msa1386730:CDS |
| TGCAGCTAGTGCTAACCAAA+AGG | 0.485258 | tig0020858:+85038 | Msa1386730:CDS |
| TGTGACTCAGGTCAAGGAGC+AGG | 0.487841 | tig0020858:+83201 | Msa1386730:intron |
| AGGACATGTCTCATGTTGTT+GGG | 0.493324 | tig0020858:+84291 | Msa1386730:intron |
| AAGGAGCAGGTGAAGCGAAA+AGG | 0.494331 | tig0020858:+83214 | Msa1386730:CDS |
| TCGCAGGAAGCTCGTGCTGC+TGG | 0.496946 | tig0020858:+85890 | Msa1386730:intron |
| GTATGATATGCTCATTAAGA+AGG | 0.500449 | tig0020858:+86391 | Msa1386730:CDS |
| AGTTGAAGCAGATAGATATC+TGG | 0.502448 | tig0020858:+85925 | Msa1386730:CDS |
| TGGTTATAACGCGAAAAGAC+AGG | 0.504452 | tig0020858:+85311 | Msa1386730:CDS |
| TGAGCAATTACTCGCCGAAA+TGG | 0.506718 | tig0020858:+85362 | Msa1386730:CDS |
| CCACTGAGATCAACCAAAGA+AGG | 0.507910 | tig0020858:-85291 | None:intergenic |
| CCAAATTCCTCAAGAAATGA+AGG | 0.508733 | tig0020858:+85267 | Msa1386730:CDS |
| AAAGCCTGACATACCGGAAG+AGG | 0.510365 | tig0020858:-84193 | None:intergenic |
| AACTTCTTGCCATGGCGAAA+GGG | 0.510505 | tig0020858:+84327 | Msa1386730:CDS |
| AGGAGCAGGTGAAGCGAAAA+GGG | 0.511931 | tig0020858:+83215 | Msa1386730:CDS |
| TTGACTCTAGATGGAGAAAA+GGG | 0.511968 | tig0020858:-84754 | None:intergenic |
| TCCAACAAATCTGGTTCCAC+TGG | 0.512061 | tig0020858:+84866 | Msa1386730:CDS |
| AAAGGCATCCAATAAAGGGC+GGG | 0.512200 | tig0020858:+85056 | Msa1386730:CDS |
| ATCTGAAGAAAGTGCTTGTA+GGG | 0.514608 | tig0020858:+85967 | Msa1386730:CDS |
| GAACTTCTTGCCATGGCGAA+AGG | 0.516288 | tig0020858:+84326 | Msa1386730:CDS |
| ATCTTCAGATAAACGGTTGG+AGG | 0.520579 | tig0020858:-86266 | None:intergenic |
| GCAGCCTGTGTGTTGACTGA+GGG | 0.523476 | tig0020858:-85018 | None:intergenic |
| GGGAATAGAAATGTATGGCA+TGG | 0.523916 | tig0020858:+84075 | Msa1386730:intron |
| AGTCCTATGTTCAGAGATAA+CGG | 0.524266 | tig0020858:-85746 | None:intergenic |
| GGCACATAGCACACTTGATA+CGG | 0.527501 | tig0020858:-83284 | None:intergenic |
| CTCACCCTGCCCTTTCGCCA+TGG | 0.527521 | tig0020858:-84336 | None:intergenic |
| TTGACAGAACTTGACCCTGC+AGG | 0.529299 | tig0020858:-86070 | None:intergenic |
| TAGGTAAAGTCAGATATAGT+AGG | 0.534129 | tig0020858:+86553 | Msa1386730:three_prime_UTR |
| CTTTATGCTAAGATCTCCCA+TGG | 0.535543 | tig0020858:-84722 | None:intergenic |
| CTTGCCATGGCGAAAGGGCA+GGG | 0.537534 | tig0020858:+84332 | Msa1386730:CDS |
| AGAAGGGCCTTCATTTCTTG+AGG | 0.537872 | tig0020858:-85274 | None:intergenic |
| TCTGCTGGTACCAGACCTGC+AGG | 0.542235 | tig0020858:+86055 | Msa1386730:CDS |
| AATTCATATTGGAAGTCAAA+CGG | 0.543137 | tig0020858:-84889 | None:intergenic |
| GGAATAGAAATGTATGGCAT+GGG | 0.547477 | tig0020858:+84076 | Msa1386730:CDS |
| TGCATCTTCAGATAAACGGT+TGG | 0.547701 | tig0020858:-86269 | None:intergenic |
| GTTTCACTCAGAAATTCAAT+GGG | 0.557415 | tig0020858:+81990 | Msa1386730:exon |
| TTAATGTCTCCAGACTCTGC+TGG | 0.560448 | tig0020858:+86040 | Msa1386730:CDS |
| TGCAGCCTGTGTGTTGACTG+AGG | 0.560612 | tig0020858:-85019 | None:intergenic |
| AATGTATGGCATGGGAAACT+GGG | 0.562064 | tig0020858:+84084 | Msa1386730:CDS |
| CCTTCTTTGGTTGATCTCAG+TGG | 0.562687 | tig0020858:+85291 | Msa1386730:CDS |
| TTATCCAAATCCATTTGAGA+AGG | 0.565094 | tig0020858:+85633 | Msa1386730:CDS |
| CATGTGGTCCCGAACAATCA+CGG | 0.569260 | tig0020858:+86004 | Msa1386730:CDS |
| TCATCAAATGTTCAAGAATG+TGG | 0.572296 | tig0020858:+86346 | Msa1386730:CDS |
| CAATCATTCTTACAGGGTCA+TGG | 0.577318 | tig0020858:+83368 | Msa1386730:CDS |
| CATGGCGAAAGGGCAGGGTG+AGG | 0.578638 | tig0020858:+84337 | Msa1386730:CDS |
| TCCAGTCTGGGCAAATAAGA+GGG | 0.578683 | tig0020858:-83889 | None:intergenic |
| AAGGCATCCAATAAAGGGCG+GGG | 0.585408 | tig0020858:+85057 | Msa1386730:CDS |
| GTCATTGACAGATTCTCCAA+TGG | 0.586027 | tig0020858:+85221 | Msa1386730:intron |
| AGAAAGAAGAATGCTGCAAG+TGG | 0.586362 | tig0020858:+82223 | Msa1386730:CDS |
| CATACCGGAAGAGGGAAGAA+CGG | 0.589060 | tig0020858:-84184 | None:intergenic |
| TATGATATGCTCATTAAGAA+GGG | 0.593230 | tig0020858:+86392 | Msa1386730:CDS |
| AGGCATCCAATAAAGGGCGG+GGG | 0.596003 | tig0020858:+85058 | Msa1386730:CDS |
| CCGAGGAAAAGTCAATATGC+CGG | 0.597275 | tig0020858:+85665 | Msa1386730:CDS |
| GATTGTAACAGGACTTCCCA+TGG | 0.597457 | tig0020858:+84705 | Msa1386730:intron |
| CACTGAGATCAACCAAAGAA+GGG | 0.597471 | tig0020858:-85290 | None:intergenic |
| CAGAAAGGAACTTCTTGCCA+TGG | 0.598444 | tig0020858:+84319 | Msa1386730:CDS |
| CAATACATAAGTCAAAATCT+GGG | 0.604695 | tig0020858:-83305 | None:intergenic |
| GGGCAGGGTGAGGACAAGAA+AGG | 0.604928 | tig0020858:+84347 | Msa1386730:CDS |
| TCTGGCGCATAAGAGAAGAA+AGG | 0.605068 | tig0020858:+85943 | Msa1386730:CDS |
| GCAGAAGTTGCTGAGCATGT+TGG | 0.605076 | tig0020858:+84106 | Msa1386730:CDS |
| GAACCGTTATCTCTGAACAT+AGG | 0.607443 | tig0020858:+85743 | Msa1386730:CDS |
| CCTGGAATTGTTAAAATGGA+AGG | 0.609692 | tig0020858:+85090 | Msa1386730:CDS |
| AATTCAATGGGTCGTTCTCG+TGG | 0.613358 | tig0020858:+82002 | Msa1386730:exon |
| ATTGGAAGTCAAACGGCCAG+TGG | 0.615296 | tig0020858:-84882 | None:intergenic |
| GGCGAGAGAAAGTGCTCATG+TGG | 0.619340 | tig0020858:+85988 | Msa1386730:CDS |
| ACAGAATAATAGATTAAGAG+AGG | 0.621723 | tig0020858:-86433 | None:intergenic |
| AAGCCTGACATACCGGAAGA+GGG | 0.625173 | tig0020858:-84192 | None:intergenic |
| CAAAAGCAATCATTCTTACA+GGG | 0.631809 | tig0020858:+83362 | Msa1386730:CDS |
| TGAGAAGGATTTAACACCCG+AGG | 0.635433 | tig0020858:+85648 | Msa1386730:CDS |
| CGTTTATCTGAAGATGCAAG+AGG | 0.641805 | tig0020858:+86274 | Msa1386730:CDS |
| AAAAGGCATCCAATAAAGGG+CGG | 0.652819 | tig0020858:+85055 | Msa1386730:CDS |
| GTTTAAGGACACTGACACTG+AGG | 0.653964 | tig0020858:+85386 | Msa1386730:CDS |
| AATCACTTCTATCCACTCCA+CGG | 0.655372 | tig0020858:-86625 | None:intergenic |
| ATTGTAACAGGACTTCCCAT+GGG | 0.663000 | tig0020858:+84706 | Msa1386730:intron |
| TAAGGACACTGACACTGAGG+AGG | 0.663510 | tig0020858:+85389 | Msa1386730:CDS |
| TGATGAAAGAAAGCGCAGGA+AGG | 0.670308 | tig0020858:+85585 | Msa1386730:CDS |
| ACGATGATGATCCAAGCCAA+AGG | 0.670643 | tig0020858:+82039 | Msa1386730:CDS |
| TTTATGCTAAGATCTCCCAT+GGG | 0.680782 | tig0020858:-84721 | None:intergenic |
| GGCTTGATGAAAGAAAGCGC+AGG | 0.689974 | tig0020858:+85581 | Msa1386730:intron |
| TGGGCCCTCAGTCAACACAC+AGG | 0.701930 | tig0020858:+85014 | Msa1386730:CDS |
| CTGCTGGTACCAGACCTGCA+GGG | 0.707483 | tig0020858:+86056 | Msa1386730:CDS |
| GGATACCATCAAAATTGACA+GGG | 0.710009 | tig0020858:+86367 | Msa1386730:CDS |
| CACTTCTATCCACTCCACGG+TGG | 0.710717 | tig0020858:-86622 | None:intergenic |
| TATCTGCTTCAACTGAACTG+CGG | 0.712712 | tig0020858:-85916 | None:intergenic |
| TACCGGAAGAGGGAAGAACG+GGG | 0.721077 | tig0020858:-84182 | None:intergenic |
| AAAATTGCGACAAAGAAACG+AGG | 0.747996 | tig0020858:-81820 | None:intergenic |
| TGTGGTCCCGAACAATCACG+GGG | 0.753110 | tig0020858:+86006 | Msa1386730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTAAAAATTTTGTATT+CGG | - | tig0020858:82972-82991 | None:intergenic | 10.0% |
| !!! | TATATATCAGTTTTTTAATA+CGG | + | tig0020858:83838-83857 | Msa1386730:intron | 10.0% |
| !! | TATATTGTTTATATATTGTA+GGG | + | tig0020858:84983-85002 | Msa1386730:intron | 10.0% |
| !! | TAATCGTAAAAATAAAATTT+AGG | + | tig0020858:86471-86490 | Msa1386730:three_prime_UTR | 10.0% |
| !!! | TCTTTTCTTATTATTGTAAT+TGG | + | tig0020858:82077-82096 | Msa1386730:intron | 15.0% |
| !!! | CTTTTCTTATTATTGTAATT+GGG | + | tig0020858:82078-82097 | Msa1386730:intron | 15.0% |
| !! | ACTAAAGTTAAAGAATTATA+TGG | - | tig0020858:82633-82652 | None:intergenic | 15.0% |
| !!! | ATATGATAAAGCATTATATT+TGG | + | tig0020858:83992-84011 | Msa1386730:intron | 15.0% |
| !! | TATCATATTTGTGTATATAA+AGG | + | tig0020858:84238-84257 | Msa1386730:intron | 15.0% |
| !! | TATTATAATCTATGATTCTT+TGG | + | tig0020858:84585-84604 | Msa1386730:intron | 15.0% |
| !! | ATTGAAAGGAAATTATAATT+GGG | - | tig0020858:84960-84979 | None:intergenic | 15.0% |
| !! | CTATATTGTTTATATATTGT+AGG | + | tig0020858:84982-85001 | Msa1386730:intron | 15.0% |
| !!! | TTATTTTTACGATTATTATG+TGG | - | tig0020858:86466-86485 | None:intergenic | 15.0% |
| !! | ATGAATAAAAATCAAACCTT+TGG | - | tig0020858:82058-82077 | None:intergenic | 20.0% |
| !! | CAAATCAATTAAAAAGTGAA+TGG | + | tig0020858:82391-82410 | Msa1386730:intron | 20.0% |
| !! | GAAAAATATAAACTTTGACT+TGG | - | tig0020858:82486-82505 | None:intergenic | 20.0% |
| !! | ACATAAGTAACATTTAAAGA+TGG | - | tig0020858:82508-82527 | None:intergenic | 20.0% |
| !! | TAGATGACAATGTAATTTAA+GGG | - | tig0020858:82949-82968 | None:intergenic | 20.0% |
| !! | TACTGTAATAAAGATATTAC+AGG | + | tig0020858:83255-83274 | Msa1386730:CDS | 20.0% |
| !! | TATGTTTAATAAGACATCAA+AGG | - | tig0020858:83420-83439 | None:intergenic | 20.0% |
| !! | TATCTATAAGAGAAACTATT+CGG | + | tig0020858:83681-83700 | Msa1386730:intron | 20.0% |
| !! | TTGGTTTAAATTAATTACCT+AGG | + | tig0020858:83945-83964 | Msa1386730:intron | 20.0% |
| !!! | ATTAGTTTCTGTAGTTTTTT+GGG | + | tig0020858:84397-84416 | Msa1386730:intron | 20.0% |
| !! | AGGCATTATTATTTATTGTT+TGG | - | tig0020858:84518-84537 | None:intergenic | 20.0% |
| !! | ATAACTGCTAAAATATGTTT+CGG | + | tig0020858:84552-84571 | Msa1386730:intron | 20.0% |
| !! | ACATTCTTCTTTATAAATAC+TGG | + | tig0020858:84674-84693 | Msa1386730:intron | 20.0% |
| !! | GATTGAAAGGAAATTATAAT+TGG | - | tig0020858:84961-84980 | None:intergenic | 20.0% |
| !! | TAAACAATATAGAGATTGAA+AGG | - | tig0020858:84974-84993 | None:intergenic | 20.0% |
| !!! | AACAACCATTTTAGTTTTAT+AGG | + | tig0020858:85458-85477 | Msa1386730:intron | 20.0% |
| !! | AGAAACCTATAAAACTAAAA+TGG | - | tig0020858:85466-85485 | None:intergenic | 20.0% |
| !! | CTCAAAATCATAAACAATAA+TGG | + | tig0020858:85504-85523 | Msa1386730:intron | 20.0% |
| !!! | ACGTTTTTCAATTTATAGAT+AGG | - | tig0020858:85557-85576 | None:intergenic | 20.0% |
| ! | AAAATCACGATTCAAGAAAA+GGG | - | tig0020858:81941-81960 | None:intergenic | 25.0% |
| ! | TAAAATCACGATTCAAGAAA+AGG | - | tig0020858:81942-81961 | None:intergenic | 25.0% |
| ! | AACAAACTCAAATTCATTGA+GGG | + | tig0020858:81968-81987 | Msa1386730:five_prime_UTR | 25.0% |
| ! | ATAGATATAGTAAAATGCTG+TGG | + | tig0020858:82152-82171 | Msa1386730:intron | 25.0% |
| ! | ATAGAATTAACCAAGTACAA+TGG | - | tig0020858:82297-82316 | None:intergenic | 25.0% |
| !!! | AATATAAACTTTGACTTGGA+TGG | - | tig0020858:82482-82501 | None:intergenic | 25.0% |
| !! | GCACTTAATGTGTATATTTT+CGG | + | tig0020858:82786-82805 | Msa1386730:intron | 25.0% |
| ! | AATGTAATTTAAGGGATGTT+TGG | - | tig0020858:82941-82960 | None:intergenic | 25.0% |
| ! | GTAGATGACAATGTAATTTA+AGG | - | tig0020858:82950-82969 | None:intergenic | 25.0% |
| ! | TTTCATTCTTTAGCGAAAAA+TGG | - | tig0020858:83075-83094 | None:intergenic | 25.0% |
| ! | CAATACATAAGTCAAAATCT+GGG | - | tig0020858:83308-83327 | None:intergenic | 25.0% |
| ! | TCAATACATAAGTCAAAATC+TGG | - | tig0020858:83309-83328 | None:intergenic | 25.0% |
| ! | AAGGAAACATTTGAAAGTAA+TGG | - | tig0020858:83401-83420 | None:intergenic | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | - | tig0020858:83734-83753 | None:intergenic | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | + | tig0020858:83738-83757 | Msa1386730:intron | 25.0% |
| !!! | CTTTTCTAGCAACAAATTTT+TGG | + | tig0020858:84047-84066 | Msa1386730:intron | 25.0% |
| !!! | AGCAACAAATTTTTGGTTTT+AGG | + | tig0020858:84054-84073 | Msa1386730:intron | 25.0% |
| !!! | GCAACAAATTTTTGGTTTTA+GGG | + | tig0020858:84055-84074 | Msa1386730:intron | 25.0% |
| !!! | TTTTAGGGAATAGAAATGTA+TGG | + | tig0020858:84070-84089 | Msa1386730:intron | 25.0% |
| !!! | CATTAGTTTCTGTAGTTTTT+TGG | + | tig0020858:84396-84415 | Msa1386730:intron | 25.0% |
| ! | ATAGCATACTGTTATAAATC+AGG | + | tig0020858:84439-84458 | Msa1386730:intron | 25.0% |
| !! | AATCAAAATGGTATTGAACA+TGG | - | tig0020858:84815-84834 | None:intergenic | 25.0% |
| ! | CATTTAGAAGTCAATCAAAA+TGG | - | tig0020858:84827-84846 | None:intergenic | 25.0% |
| !!! | TTCTAAATGTTGATTCAGAA+TGG | + | tig0020858:84838-84857 | Msa1386730:intron | 25.0% |
| ! | AATTCATATTGGAAGTCAAA+CGG | - | tig0020858:84892-84911 | None:intergenic | 25.0% |
| !!! | ATTGTTTATGATTTTGAGTG+TGG | - | tig0020858:85502-85521 | None:intergenic | 25.0% |
| ! | TATAAATTGAAAAACGTTGC+AGG | + | tig0020858:85560-85579 | Msa1386730:intron | 25.0% |
| ! | GAATGTCGATAAGAATTTAA+TGG | - | tig0020858:85812-85831 | None:intergenic | 25.0% |
| !!! | TTCCTTTTTTTTTCTCTACT+TGG | + | tig0020858:85829-85848 | Msa1386730:intron | 25.0% |
| ! | TTCCAAGTAGAGAAAAAAAA+AGG | - | tig0020858:85834-85853 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTCTGAAACCAT+CGG | + | tig0020858:86197-86216 | Msa1386730:intron | 25.0% |
| ! | TATGATATGCTCATTAAGAA+GGG | + | tig0020858:86392-86411 | Msa1386730:CDS | 25.0% |
| ! | ACAGAATAATAGATTAAGAG+AGG | - | tig0020858:86436-86455 | None:intergenic | 25.0% |
| TTGTGAAACTAGTTGAGTTT+GGG | - | tig0020858:81784-81803 | None:intergenic | 30.0% | |
| TTTGTGAAACTAGTTGAGTT+TGG | - | tig0020858:81785-81804 | None:intergenic | 30.0% | |
| CAACAAACTCAAATTCATTG+AGG | + | tig0020858:81967-81986 | Msa1386730:five_prime_UTR | 30.0% | |
| GTTTCACTCAGAAATTCAAT+GGG | + | tig0020858:81990-82009 | Msa1386730:exon | 30.0% | |
| TAAAAATCAAACCTTTGGCT+TGG | - | tig0020858:82053-82072 | None:intergenic | 30.0% | |
| TTTCAACTGTATGTATGTGT+AGG | + | tig0020858:82194-82213 | Msa1386730:intron | 30.0% | |
| AGCTACAAATTGTCAAATTG+TGG | - | tig0020858:82699-82718 | None:intergenic | 30.0% | |
| ATACACATTAAGTGCTTGTT+CGG | - | tig0020858:82781-82800 | None:intergenic | 30.0% | |
| ! | CTTAATGTGTATATTTTCGG+TGG | + | tig0020858:82789-82808 | Msa1386730:intron | 30.0% |
| CATCAACTTATTCAGTCATA+CGG | - | tig0020858:82998-83017 | None:intergenic | 30.0% | |
| TTATTCAAACAAACACTCCA+CGG | - | tig0020858:83042-83061 | None:intergenic | 30.0% | |
| !! | TAAGAATGATTGCTTTTGTG+GGG | - | tig0020858:83360-83379 | None:intergenic | 30.0% |
| !! | GTAAGAATGATTGCTTTTGT+GGG | - | tig0020858:83361-83380 | None:intergenic | 30.0% |
| !! | TGTAAGAATGATTGCTTTTG+TGG | - | tig0020858:83362-83381 | None:intergenic | 30.0% |
| ACAAAAGCAATCATTCTTAC+AGG | + | tig0020858:83361-83380 | Msa1386730:CDS | 30.0% | |
| CAAAAGCAATCATTCTTACA+GGG | + | tig0020858:83362-83381 | Msa1386730:CDS | 30.0% | |
| ! | TAACCTTTTGTTCAAGAGAA+AGG | + | tig0020858:83438-83457 | Msa1386730:intron | 30.0% |
| TAACCTTTCTCTTGAACAAA+AGG | - | tig0020858:83444-83463 | None:intergenic | 30.0% | |
| TGATCACTGAGTTTAATTAC+AGG | + | tig0020858:83493-83512 | Msa1386730:intron | 30.0% | |
| ! | CAATTTTCATAACAGCAGTT+TGG | - | tig0020858:83612-83631 | None:intergenic | 30.0% |
| AGCAATGATAACAACAATGT+TGG | - | tig0020858:83652-83671 | None:intergenic | 30.0% | |
| AACTATTCGGAAAGATTTAG+AGG | + | tig0020858:83694-83713 | Msa1386730:intron | 30.0% | |
| ! | TGATGAAATTTTGCTTCTAG+AGG | + | tig0020858:83919-83938 | Msa1386730:CDS | 30.0% |
| AATTAATTACCTAGGAGTAG+CGG | + | tig0020858:83953-83972 | Msa1386730:intron | 30.0% | |
| !! | CATTATATTTGGTGTTGAAG+AGG | + | tig0020858:84003-84022 | Msa1386730:intron | 30.0% |
| CATGTCCTAGTAAATAAGAA+TGG | - | tig0020858:84279-84298 | None:intergenic | 30.0% | |
| ! | GTCTCATTTATCACTTCTTT+TGG | + | tig0020858:84465-84484 | Msa1386730:intron | 30.0% |
| AGTTATCAGCAACATAAATG+AGG | - | tig0020858:84538-84557 | None:intergenic | 30.0% | |
| !!! | TGATTGGTTGGTTTTTGTTT+TGG | + | tig0020858:84623-84642 | Msa1386730:intron | 30.0% |
| TTGACTTCCAATATGAATTC+AGG | + | tig0020858:84893-84912 | Msa1386730:CDS | 30.0% | |
| TAGCTTACCTGAATTCATAT+TGG | - | tig0020858:84903-84922 | None:intergenic | 30.0% | |
| !! | GAAGGTGTGCTTTTTATATT+TGG | + | tig0020858:85108-85127 | Msa1386730:intron | 30.0% |
| AGCATTGTGTAATGTCAATT+GGG | - | tig0020858:85142-85161 | None:intergenic | 30.0% | |
| TCAGCATCATTATCATATTC+AGG | - | tig0020858:85345-85364 | None:intergenic | 30.0% | |
| TTATCCAAATCCATTTGAGA+AGG | + | tig0020858:85633-85652 | Msa1386730:CDS | 30.0% | |
| ! | AAATCCTTCTCAAATGGATT+TGG | - | tig0020858:85640-85659 | None:intergenic | 30.0% |
| GAAAAGAATTCAAGAGCTTA+AGG | + | tig0020858:85771-85790 | Msa1386730:CDS | 30.0% | |
| !!! | ACAGTTTTAGAATGCAAACT+TGG | - | tig0020858:86165-86184 | None:intergenic | 30.0% |
| TCATCAAATGTTCAAGAATG+TGG | + | tig0020858:86346-86365 | Msa1386730:CDS | 30.0% | |
| GTATGATATGCTCATTAAGA+AGG | + | tig0020858:86391-86410 | Msa1386730:CDS | 30.0% | |
| ! | TTAAGTGTTGTATCATGCTT+TGG | + | tig0020858:86527-86546 | Msa1386730:three_prime_UTR | 30.0% |
| ! | TTGTATCATGCTTTGGTAAT+AGG | + | tig0020858:86534-86553 | Msa1386730:three_prime_UTR | 30.0% |
| TAGGTAAAGTCAGATATAGT+AGG | + | tig0020858:86553-86572 | Msa1386730:three_prime_UTR | 30.0% | |
| AACTGGATTTCGTTCAGTTT+GGG | - | tig0020858:81750-81769 | None:intergenic | 35.0% | |
| TAACTGGATTTCGTTCAGTT+TGG | - | tig0020858:81751-81770 | None:intergenic | 35.0% | |
| ACAAAGAAACGAGGATGTTT+CGG | - | tig0020858:81814-81833 | None:intergenic | 35.0% | |
| AAAATTGCGACAAAGAAACG+AGG | - | tig0020858:81823-81842 | None:intergenic | 35.0% | |
| GGTTTCACTCAGAAATTCAA+TGG | + | tig0020858:81989-82008 | Msa1386730:exon | 35.0% | |
| AGTGGAGATAATTCAGAATC+TGG | + | tig0020858:82241-82260 | Msa1386730:CDS | 35.0% | |
| CTATCATGTACCATTGTACT+TGG | + | tig0020858:82284-82303 | Msa1386730:intron | 35.0% | |
| ACACAAATCGAAGAATGCAA+AGG | - | tig0020858:82558-82577 | None:intergenic | 35.0% | |
| !! | TAGCTTTGAAATTATCACCG+TGG | + | tig0020858:82849-82868 | Msa1386730:intron | 35.0% |
| !! | AGCTTTGAAATTATCACCGT+GGG | + | tig0020858:82850-82869 | Msa1386730:intron | 35.0% |
| ! | TACGCTTTGAACCAAAGATA+CGG | - | tig0020858:82902-82921 | None:intergenic | 35.0% |
| TTCAAAGCGTAGGTTTGAAA+CGG | + | tig0020858:82911-82930 | Msa1386730:intron | 35.0% | |
| GTTGATGTTGACAGTTGTAA+TGG | + | tig0020858:83011-83030 | Msa1386730:intron | 35.0% | |
| TATTCAAACAAACACTCCAC+GGG | - | tig0020858:83041-83060 | None:intergenic | 35.0% | |
| ! | TGTATTGAGTGCTTTTCTGT+CGG | + | tig0020858:83321-83340 | Msa1386730:CDS | 35.0% |
| AGATTTAGAGGTTAACGAGA+TGG | + | tig0020858:83706-83725 | Msa1386730:intron | 35.0% | |
| TAACGAGATGGATCCAAATA+TGG | + | tig0020858:83718-83737 | Msa1386730:intron | 35.0% | |
| GACAAATTATCCTGACAACA+AGG | - | tig0020858:83866-83885 | None:intergenic | 35.0% | |
| !!! | ATTTTGCTTCTAGAGGTACT+TGG | + | tig0020858:83926-83945 | Msa1386730:intron | 35.0% |
| GGAATAGAAATGTATGGCAT+GGG | + | tig0020858:84076-84095 | Msa1386730:CDS | 35.0% | |
| AAGCATGCATAGAACACTAT+AGG | + | tig0020858:84143-84162 | Msa1386730:CDS | 35.0% | |
| ! | GCTGACCATTCTTATTTACT+AGG | + | tig0020858:84271-84290 | Msa1386730:intron | 35.0% |
| TGTTGTTGGGAAAAACAGAA+AGG | + | tig0020858:84304-84323 | Msa1386730:CDS | 35.0% | |
| TGGTTACTTGTGATTGTAAC+AGG | + | tig0020858:84694-84713 | Msa1386730:intron | 35.0% | |
| TTTATGCTAAGATCTCCCAT+GGG | - | tig0020858:84724-84743 | None:intergenic | 35.0% | |
| TTGACTCTAGATGGAGAAAA+GGG | - | tig0020858:84757-84776 | None:intergenic | 35.0% | |
| ATGGAAGATTCCAACAAATC+TGG | + | tig0020858:84857-84876 | Msa1386730:CDS | 35.0% | |
| TATATTGTAGGGTCAGATTC+TGG | + | tig0020858:84994-85013 | Msa1386730:intron | 35.0% | |
| ATATTGTAGGGTCAGATTCT+GGG | + | tig0020858:84995-85014 | Msa1386730:intron | 35.0% | |
| !! | AACCAAAAGGCATCCAATAA+AGG | + | tig0020858:85051-85070 | Msa1386730:CDS | 35.0% |
| !! | ACCAAAAGGCATCCAATAAA+GGG | + | tig0020858:85052-85071 | Msa1386730:CDS | 35.0% |
| TGGTCCTGGAATTGTTAAAA+TGG | + | tig0020858:85086-85105 | Msa1386730:CDS | 35.0% | |
| !! | CCTTCCATTTTAACAATTCC+AGG | - | tig0020858:85093-85112 | None:intergenic | 35.0% |
| CCTGGAATTGTTAAAATGGA+AGG | + | tig0020858:85090-85109 | Msa1386730:CDS | 35.0% | |
| CAGCATTGTGTAATGTCAAT+TGG | - | tig0020858:85143-85162 | None:intergenic | 35.0% | |
| !! | TACACAATGCTGATTCTTTG+AGG | + | tig0020858:85151-85170 | Msa1386730:intron | 35.0% |
| CTGTCAATGACAAAAGAACT+AGG | - | tig0020858:85212-85231 | None:intergenic | 35.0% | |
| CCTTCATTTCTTGAGGAATT+TGG | - | tig0020858:85270-85289 | None:intergenic | 35.0% | |
| CCAAATTCCTCAAGAAATGA+AGG | + | tig0020858:85267-85286 | Msa1386730:CDS | 35.0% | |
| AGTGTCCTTAAACTCCATTT+CGG | - | tig0020858:85379-85398 | None:intergenic | 35.0% | |
| TGCTGCGCATTTATTCAAAA+AGG | + | tig0020858:85433-85452 | Msa1386730:CDS | 35.0% | |
| GGTGTTAAATCCTTCTCAAA+TGG | - | tig0020858:85646-85665 | None:intergenic | 35.0% | |
| GCATGAACATGTCATATTTC+CGG | - | tig0020858:85687-85706 | None:intergenic | 35.0% | |
| AGTCCTATGTTCAGAGATAA+CGG | - | tig0020858:85749-85768 | None:intergenic | 35.0% | |
| AGTTGAAGCAGATAGATATC+TGG | + | tig0020858:85925-85944 | Msa1386730:CDS | 35.0% | |
| !! | AATCTGAAGAAAGTGCTTGT+AGG | + | tig0020858:85966-85985 | Msa1386730:CDS | 35.0% |
| !! | ATCTGAAGAAAGTGCTTGTA+GGG | + | tig0020858:85967-85986 | Msa1386730:CDS | 35.0% |
| TCTGGAGACATTAATGCATT+TGG | - | tig0020858:86034-86053 | None:intergenic | 35.0% | |
| GTCAAGTTCTGTCAATGAAA+TGG | + | tig0020858:86078-86097 | Msa1386730:CDS | 35.0% | |
| CTCTTGCATCTTCAGATAAA+CGG | - | tig0020858:86276-86295 | None:intergenic | 35.0% | |
| CAGCAATCATTTGTACAGAT+AGG | - | tig0020858:86301-86320 | None:intergenic | 35.0% | |
| CTATCTGTACAAATGATTGC+TGG | + | tig0020858:86299-86318 | Msa1386730:CDS | 35.0% | |
| TGGATACCATCAAAATTGAC+AGG | + | tig0020858:86366-86385 | Msa1386730:CDS | 35.0% | |
| GGATACCATCAAAATTGACA+GGG | + | tig0020858:86367-86386 | Msa1386730:CDS | 35.0% | |
| ! | ATACACCCTGTCAATTTTGA+TGG | - | tig0020858:86375-86394 | None:intergenic | 35.0% |
| ATGCTCATTAAGAAGGGAAT+TGG | + | tig0020858:86398-86417 | Msa1386730:CDS | 35.0% | |
| CTGTATGTATGTGTAGGTCA+AGG | + | tig0020858:82200-82219 | Msa1386730:intron | 40.0% | |
| AGAAAGAAGAATGCTGCAAG+TGG | + | tig0020858:82223-82242 | Msa1386730:CDS | 40.0% | |
| ! | AATTCAGAATCTGGAGTTGC+AGG | + | tig0020858:82250-82269 | Msa1386730:CDS | 40.0% |
| TGGATGGAAATCACCAAGTT+CGG | - | tig0020858:82466-82485 | None:intergenic | 40.0% | |
| CAAATCGAAGAATGCAAAGG+TGG | - | tig0020858:82555-82574 | None:intergenic | 40.0% | |
| TAGCTTAGAAATTATCGCCG+TGG | + | tig0020858:82714-82733 | Msa1386730:intron | 40.0% | |
| AGAAACTGTAGCCGTATCTT+TGG | + | tig0020858:82888-82907 | Msa1386730:intron | 40.0% | |
| ! | GTATCTTTGGTTCAAAGCGT+AGG | + | tig0020858:82901-82920 | Msa1386730:intron | 40.0% |
| ATGTTGACAGTTGTAATGGC+AGG | + | tig0020858:83015-83034 | Msa1386730:intron | 40.0% | |
| ! | TTCCTTCCTTTTTGTGACTC+AGG | + | tig0020858:83189-83208 | Msa1386730:intron | 40.0% |
| CAATCATTCTTACAGGGTCA+TGG | + | tig0020858:83368-83387 | Msa1386730:CDS | 40.0% | |
| TAATTATCCTGCTAGACTGC+AGG | + | tig0020858:83469-83488 | Msa1386730:intron | 40.0% | |
| AACAATGTTGGCGAAACTAG+TGG | - | tig0020858:83640-83659 | None:intergenic | 40.0% | |
| ! | TAATACGGTTCCTTGTTGTC+AGG | + | tig0020858:83853-83872 | Msa1386730:intron | 40.0% |
| TTAAATTCACCGCTACTCCT+AGG | - | tig0020858:83965-83984 | None:intergenic | 40.0% | |
| GGGAATAGAAATGTATGGCA+TGG | + | tig0020858:84075-84094 | Msa1386730:intron | 40.0% | |
| AAATGTATGGCATGGGAAAC+TGG | + | tig0020858:84083-84102 | Msa1386730:CDS | 40.0% | |
| AATGTATGGCATGGGAAACT+GGG | + | tig0020858:84084-84103 | Msa1386730:CDS | 40.0% | |
| TCATTCAAAGCCTGACATAC+CGG | - | tig0020858:84202-84221 | None:intergenic | 40.0% | |
| TAGGACATGTCTCATGTTGT+TGG | + | tig0020858:84290-84309 | Msa1386730:intron | 40.0% | |
| AGGACATGTCTCATGTTGTT+GGG | + | tig0020858:84291-84310 | Msa1386730:intron | 40.0% | |
| ! | GCTTCTGATTTTTCGCTGAT+TGG | + | tig0020858:84607-84626 | Msa1386730:intron | 40.0% |
| !! | CTGATTTTTCGCTGATTGGT+TGG | + | tig0020858:84611-84630 | Msa1386730:intron | 40.0% |
| ATTGTAACAGGACTTCCCAT+GGG | + | tig0020858:84706-84725 | Msa1386730:intron | 40.0% | |
| CTTTATGCTAAGATCTCCCA+TGG | - | tig0020858:84725-84744 | None:intergenic | 40.0% | |
| CATGGGAGATCTTAGCATAA+AGG | + | tig0020858:84723-84742 | Msa1386730:CDS | 40.0% | |
| CTTGACTCTAGATGGAGAAA+AGG | - | tig0020858:84758-84777 | None:intergenic | 40.0% | |
| ! | TCTCCATCTAGAGTCAAGTA+AGG | + | tig0020858:84760-84779 | Msa1386730:intron | 40.0% |
| !! | AAAAGGCATCCAATAAAGGG+CGG | + | tig0020858:85055-85074 | Msa1386730:CDS | 40.0% |
| GTCATTGACAGATTCTCCAA+TGG | + | tig0020858:85221-85240 | Msa1386730:intron | 40.0% | |
| ! | TCTCCAATGGACAGAGATTT+TGG | + | tig0020858:85234-85253 | Msa1386730:CDS | 40.0% |
| AAGAAATGAAGGCCCTTCTT+TGG | + | tig0020858:85278-85297 | Msa1386730:CDS | 40.0% | |
| CACTGAGATCAACCAAAGAA+GGG | - | tig0020858:85293-85312 | None:intergenic | 40.0% | |
| TGGTTATAACGCGAAAAGAC+AGG | + | tig0020858:85311-85330 | Msa1386730:CDS | 40.0% | |
| !! | ATTTTGAGTGTGGATGACTC+GGG | - | tig0020858:85492-85511 | None:intergenic | 40.0% |
| !! | GATTTTGAGTGTGGATGACT+CGG | - | tig0020858:85493-85512 | None:intergenic | 40.0% |
| GTTCATGCGCTTTCATACTA+AGG | + | tig0020858:85699-85718 | Msa1386730:CDS | 40.0% | |
| GAACCGTTATCTCTGAACAT+AGG | + | tig0020858:85743-85762 | Msa1386730:CDS | 40.0% | |
| ! | AGAGCTTAAGGTTTGAGACA+TGG | + | tig0020858:85783-85802 | Msa1386730:intron | 40.0% |
| ! | CATTTGTTGAACATGATCGC+AGG | + | tig0020858:85874-85893 | Msa1386730:intron | 40.0% |
| TATCTGCTTCAACTGAACTG+CGG | - | tig0020858:85919-85938 | None:intergenic | 40.0% | |
| GTCAATGAAATGGATGCAAC+TGG | + | tig0020858:86088-86107 | Msa1386730:CDS | 40.0% | |
| ATGGATGCAACTGGATACTA+TGG | + | tig0020858:86097-86116 | Msa1386730:CDS | 40.0% | |
| ATCTTCAGATAAACGGTTGG+AGG | - | tig0020858:86269-86288 | None:intergenic | 40.0% | |
| TGCATCTTCAGATAAACGGT+TGG | - | tig0020858:86272-86291 | None:intergenic | 40.0% | |
| CGTTTATCTGAAGATGCAAG+AGG | + | tig0020858:86274-86293 | Msa1386730:CDS | 40.0% | |
| AATCACTTCTATCCACTCCA+CGG | - | tig0020858:86628-86647 | None:intergenic | 40.0% | |
| !! | TTTGGGTTGCTGAGTGTAAC+TGG | - | tig0020858:81767-81786 | None:intergenic | 45.0% |
| AATTCAATGGGTCGTTCTCG+TGG | + | tig0020858:82002-82021 | Msa1386730:exon | 45.0% | |
| ACGATGATGATCCAAGCCAA+AGG | + | tig0020858:82039-82058 | Msa1386730:CDS | 45.0% | |
| TCCAGCGCAGAAAAAAACAC+AGG | - | tig0020858:82671-82690 | None:intergenic | 45.0% | |
| ! | ATTATCACCGTGGGAAGTGT+CGG | + | tig0020858:82859-82878 | Msa1386730:intron | 45.0% |
| GACCTGAGTCACAAAAAGGA+AGG | - | tig0020858:83194-83213 | None:intergenic | 45.0% | |
| CCTTGACCTGAGTCACAAAA+AGG | - | tig0020858:83198-83217 | None:intergenic | 45.0% | |
| ! | CCTTTTTGTGACTCAGGTCA+AGG | + | tig0020858:83195-83214 | Msa1386730:intron | 45.0% |
| GGCACATAGCACACTTGATA+CGG | - | tig0020858:83287-83306 | None:intergenic | 45.0% | |
| ACTAAGTGGAGTTGGCTACA+TGG | - | tig0020858:83775-83794 | None:intergenic | 45.0% | |
| ATGTAGCCAACTCCACTTAG+TGG | + | tig0020858:83774-83793 | Msa1386730:intron | 45.0% | |
| TGTAGCCAACTCCACTTAGT+GGG | + | tig0020858:83775-83794 | Msa1386730:intron | 45.0% | |
| CTTATCCCACTAAGTGGAGT+TGG | - | tig0020858:83783-83802 | None:intergenic | 45.0% | |
| CAACTCCACTTAGTGGGATA+AGG | + | tig0020858:83781-83800 | Msa1386730:intron | 45.0% | |
| TCCAGTCTGGGCAAATAAGA+GGG | - | tig0020858:83892-83911 | None:intergenic | 45.0% | |
| TTCCAGTCTGGGCAAATAAG+AGG | - | tig0020858:83893-83912 | None:intergenic | 45.0% | |
| CATCATCTGCATTCCAGTCT+GGG | - | tig0020858:83904-83923 | None:intergenic | 45.0% | |
| TCATCATCTGCATTCCAGTC+TGG | - | tig0020858:83905-83924 | None:intergenic | 45.0% | |
| CAGAAAGGAACTTCTTGCCA+TGG | + | tig0020858:84319-84338 | Msa1386730:CDS | 45.0% | |
| AACTTCTTGCCATGGCGAAA+GGG | + | tig0020858:84327-84346 | Msa1386730:CDS | 45.0% | |
| GATTGTAACAGGACTTCCCA+TGG | + | tig0020858:84705-84724 | Msa1386730:intron | 45.0% | |
| CAGCCTTACTTGACTCTAGA+TGG | - | tig0020858:84766-84785 | None:intergenic | 45.0% | |
| ! | TCCAACAAATCTGGTTCCAC+TGG | + | tig0020858:84866-84885 | Msa1386730:CDS | 45.0% |
| TGCAGCTAGTGCTAACCAAA+AGG | + | tig0020858:85038-85057 | Msa1386730:CDS | 45.0% | |
| ! | GCCCTTTATTGGATGCCTTT+TGG | - | tig0020858:85056-85075 | None:intergenic | 45.0% |
| !! | AAAGGCATCCAATAAAGGGC+GGG | + | tig0020858:85056-85075 | Msa1386730:CDS | 45.0% |
| CCTCCAAAATCTCTGTCCAT+TGG | - | tig0020858:85240-85259 | None:intergenic | 45.0% | |
| ! | CCAATGGACAGAGATTTTGG+AGG | + | tig0020858:85237-85256 | Msa1386730:CDS | 45.0% |
| AGAAGGGCCTTCATTTCTTG+AGG | - | tig0020858:85277-85296 | None:intergenic | 45.0% | |
| CCACTGAGATCAACCAAAGA+AGG | - | tig0020858:85294-85313 | None:intergenic | 45.0% | |
| CCTTCTTTGGTTGATCTCAG+TGG | + | tig0020858:85291-85310 | Msa1386730:CDS | 45.0% | |
| TGAGCAATTACTCGCCGAAA+TGG | + | tig0020858:85362-85381 | Msa1386730:CDS | 45.0% | |
| ACTCGCCGAAATGGAGTTTA+AGG | + | tig0020858:85371-85390 | Msa1386730:CDS | 45.0% | |
| GTTTAAGGACACTGACACTG+AGG | + | tig0020858:85386-85405 | Msa1386730:CDS | 45.0% | |
| ! | TGATGAAAGAAAGCGCAGGA+AGG | + | tig0020858:85585-85604 | Msa1386730:CDS | 45.0% |
| TGAGAAGGATTTAACACCCG+AGG | + | tig0020858:85648-85667 | Msa1386730:CDS | 45.0% | |
| !!! | CGGCATATTGACTTTTCCTC+GGG | - | tig0020858:85667-85686 | None:intergenic | 45.0% |
| !!! | CCGGCATATTGACTTTTCCT+CGG | - | tig0020858:85668-85687 | None:intergenic | 45.0% |
| CCGAGGAAAAGTCAATATGC+CGG | + | tig0020858:85665-85684 | Msa1386730:CDS | 45.0% | |
| TCTGGCGCATAAGAGAAGAA+AGG | + | tig0020858:85943-85962 | Msa1386730:CDS | 45.0% | |
| ! | TTTGGAACCCCGTGATTGTT+CGG | - | tig0020858:86016-86035 | None:intergenic | 45.0% |
| TTAATGTCTCCAGACTCTGC+TGG | + | tig0020858:86040-86059 | Msa1386730:CDS | 45.0% | |
| AACGTTTGTGCTGCGAGTTA+AGG | + | tig0020858:86240-86259 | Msa1386730:CDS | 45.0% | |
| ! | CAGACCTTTTTAATCCACCG+TGG | + | tig0020858:86608-86627 | Msa1386730:three_prime_UTR | 45.0% |
| !! | CACTCCACGGTGGATTAAAA+AGG | - | tig0020858:86615-86634 | None:intergenic | 45.0% |
| ! | CTTTTTAATCCACCGTGGAG+TGG | + | tig0020858:86613-86632 | Msa1386730:three_prime_UTR | 45.0% |
| !!! | TTTTCTTTATATAAAAATTT+AGG | + | tig0020858:81862-81881 | Msa1386730:five_prime_UTR | 5.0% |
| !! | TTTCTTTATATAAAAATTTA+GGG | + | tig0020858:81863-81882 | Msa1386730:five_prime_UTR | 5.0% |
| !!! | CATTTTTATTTTATAAATAT+TGG | + | tig0020858:84649-84668 | Msa1386730:intron | 5.0% |
| CAAAGGTGGCGACATGCAAT+TGG | - | tig0020858:82541-82560 | None:intergenic | 50.0% | |
| !!! | GCCTGTGTTTTTTTCTGCGC+TGG | + | tig0020858:82667-82686 | Msa1386730:intron | 50.0% |
| GCATCTCGACACTCATTCCA+CGG | - | tig0020858:82734-82753 | None:intergenic | 50.0% | |
| !! | TTATCACCGTGGGAAGTGTC+GGG | + | tig0020858:82860-82879 | Msa1386730:intron | 50.0% |
| AAGGAGCAGGTGAAGCGAAA+AGG | + | tig0020858:83214-83233 | Msa1386730:CDS | 50.0% | |
| AGGAGCAGGTGAAGCGAAAA+GGG | + | tig0020858:83215-83234 | Msa1386730:CDS | 50.0% | |
| TGATCAACCTGCAGTCTAGC+AGG | - | tig0020858:83479-83498 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | tig0020858:83789-83808 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | tig0020858:83786-83805 | Msa1386730:intron | 50.0% | |
| ! | TCCCTCTTATTTGCCCAGAC+TGG | + | tig0020858:83888-83907 | Msa1386730:CDS | 50.0% |
| GCAGAAGTTGCTGAGCATGT+TGG | + | tig0020858:84106-84125 | Msa1386730:CDS | 50.0% | |
| ATACCGGAAGAGGGAAGAAC+GGG | - | tig0020858:84186-84205 | None:intergenic | 50.0% | |
| CATACCGGAAGAGGGAAGAA+CGG | - | tig0020858:84187-84206 | None:intergenic | 50.0% | |
| AAGCCTGACATACCGGAAGA+GGG | - | tig0020858:84195-84214 | None:intergenic | 50.0% | |
| AAAGCCTGACATACCGGAAG+AGG | - | tig0020858:84196-84215 | None:intergenic | 50.0% | |
| GAACTTCTTGCCATGGCGAA+AGG | + | tig0020858:84326-84345 | Msa1386730:CDS | 50.0% | |
| GCCAGTGGAACCAGATTTGT+TGG | - | tig0020858:84870-84889 | None:intergenic | 50.0% | |
| ATTGGAAGTCAAACGGCCAG+TGG | - | tig0020858:84885-84904 | None:intergenic | 50.0% | |
| ! | AAGGCATCCAATAAAGGGCG+GGG | + | tig0020858:85057-85076 | Msa1386730:CDS | 50.0% |
| TAAGGACACTGACACTGAGG+AGG | + | tig0020858:85389-85408 | Msa1386730:CDS | 50.0% | |
| ! | GGCTTGATGAAAGAAAGCGC+AGG | + | tig0020858:85581-85600 | Msa1386730:intron | 50.0% |
| CATGTGGTCCCGAACAATCA+CGG | + | tig0020858:86004-86023 | Msa1386730:CDS | 50.0% | |
| ATGTGGTCCCGAACAATCAC+GGG | + | tig0020858:86005-86024 | Msa1386730:CDS | 50.0% | |
| TTGGAACCCCGTGATTGTTC+GGG | - | tig0020858:86015-86034 | None:intergenic | 50.0% | |
| TTGACAGAACTTGACCCTGC+AGG | - | tig0020858:86073-86092 | None:intergenic | 50.0% | |
| CTGGCAGAATTTACAGCCGA+TGG | - | tig0020858:86216-86235 | None:intergenic | 50.0% | |
| ! | CATCGGCTGTAAATTCTGCC+AGG | + | tig0020858:86214-86233 | Msa1386730:intron | 50.0% |
| GCGAAACACGTGACCGAACT+TGG | + | tig0020858:82450-82469 | Msa1386730:intron | 55.0% | |
| TGTGACTCAGGTCAAGGAGC+AGG | + | tig0020858:83201-83220 | Msa1386730:intron | 55.0% | |
| ! | GTGCTTTTCTGTCGGAGCTG+AGG | + | tig0020858:83329-83348 | Msa1386730:CDS | 55.0% |
| TACCGGAAGAGGGAAGAACG+GGG | - | tig0020858:84185-84204 | None:intergenic | 55.0% | |
| CTTCCCTCTTCCGGTATGTC+AGG | + | tig0020858:84189-84208 | Msa1386730:intron | 55.0% | |
| !! | GCAGCCTGTGTGTTGACTGA+GGG | - | tig0020858:85021-85040 | None:intergenic | 55.0% |
| !! | TGCAGCCTGTGTGTTGACTG+AGG | - | tig0020858:85022-85041 | None:intergenic | 55.0% |
| AGGCATCCAATAAAGGGCGG+GGG | + | tig0020858:85058-85077 | Msa1386730:CDS | 55.0% | |
| TCCAATAAAGGGCGGGGGAA+AGG | + | tig0020858:85063-85082 | Msa1386730:CDS | 55.0% | |
| ACCTTTCCCCCGCCCTTTAT+TGG | - | tig0020858:85067-85086 | None:intergenic | 55.0% | |
| AATAAAGGGCGGGGGAAAGG+TGG | + | tig0020858:85066-85085 | Msa1386730:CDS | 55.0% | |
| !! | GGCGAGAGAAAGTGCTCATG+TGG | + | tig0020858:85988-86007 | Msa1386730:CDS | 55.0% |
| TGTGGTCCCGAACAATCACG+GGG | + | tig0020858:86006-86025 | Msa1386730:CDS | 55.0% | |
| AGAACTTGACCCTGCAGGTC+TGG | - | tig0020858:86068-86087 | None:intergenic | 55.0% | |
| CGCAGCACAAACGTTTCTCC+TGG | - | tig0020858:86235-86254 | None:intergenic | 55.0% | |
| CACTTCTATCCACTCCACGG+TGG | - | tig0020858:86625-86644 | None:intergenic | 55.0% | |
| TCGCATCCCGACACTTCCCA+CGG | - | tig0020858:82869-82888 | None:intergenic | 60.0% | |
| CAGTTGTAATGGCAGGCCCG+TGG | + | tig0020858:83022-83041 | Msa1386730:intron | 60.0% | |
| CTCCCCGTTCTTCCCTCTTC+CGG | + | tig0020858:84180-84199 | Msa1386730:CDS | 60.0% | |
| TCTTGCCATGGCGAAAGGGC+AGG | + | tig0020858:84331-84350 | Msa1386730:CDS | 60.0% | |
| CTTGCCATGGCGAAAGGGCA+GGG | + | tig0020858:84332-84351 | Msa1386730:CDS | 60.0% | |
| GGGCAGGGTGAGGACAAGAA+AGG | + | tig0020858:84347-84366 | Msa1386730:CDS | 60.0% | |
| TGGGCCCTCAGTCAACACAC+AGG | + | tig0020858:85014-85033 | Msa1386730:CDS | 60.0% | |
| GGTCTGGTACCAGCAGAGTC+TGG | - | tig0020858:86052-86071 | None:intergenic | 60.0% | |
| TCTGCTGGTACCAGACCTGC+AGG | + | tig0020858:86055-86074 | Msa1386730:CDS | 60.0% | |
| CTGCTGGTACCAGACCTGCA+GGG | + | tig0020858:86056-86075 | Msa1386730:CDS | 60.0% | |
| CTCACCCTGCCCTTTCGCCA+TGG | - | tig0020858:84339-84358 | None:intergenic | 65.0% | |
| CATGGCGAAAGGGCAGGGTG+AGG | + | tig0020858:84337-84356 | Msa1386730:CDS | 65.0% | |
| TCGCAGGAAGCTCGTGCTGC+TGG | + | tig0020858:85890-85909 | Msa1386730:intron | 65.0% | |
| GGGCGGGGGAAAGGTGGTCC+TGG | + | tig0020858:85072-85091 | Msa1386730:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020858 | gene | 81730 | 86700 | 81730 | ID=Msa1386730;Name=Msa1386730 |
| tig0020858 | mRNA | 81730 | 86700 | 81730 | ID=Msa1386730-mRNA-1;Parent=Msa1386730;Name=Msa1386730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=278|1|1|1|1|1|13|270|552 |
| tig0020858 | exon | 81730 | 82060 | 81730 | ID=Msa1386730-mRNA-1:exon:10308;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 82216 | 82271 | 82216 | ID=Msa1386730-mRNA-1:exon:10309;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 83211 | 83389 | 83211 | ID=Msa1386730-mRNA-1:exon:10310;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 83875 | 83940 | 83875 | ID=Msa1386730-mRNA-1:exon:10311;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 84076 | 84201 | 84076 | ID=Msa1386730-mRNA-1:exon:10312;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 84293 | 84368 | 84293 | ID=Msa1386730-mRNA-1:exon:10313;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 84716 | 84776 | 84716 | ID=Msa1386730-mRNA-1:exon:10314;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 84856 | 84914 | 84856 | ID=Msa1386730-mRNA-1:exon:10315;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 85004 | 85111 | 85004 | ID=Msa1386730-mRNA-1:exon:10316;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 85232 | 85454 | 85232 | ID=Msa1386730-mRNA-1:exon:10317;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 85582 | 85792 | 85582 | ID=Msa1386730-mRNA-1:exon:10318;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 85896 | 86141 | 85896 | ID=Msa1386730-mRNA-1:exon:10319;Parent=Msa1386730-mRNA-1 |
| tig0020858 | exon | 86236 | 86700 | 86236 | ID=Msa1386730-mRNA-1:exon:10320;Parent=Msa1386730-mRNA-1 |
| tig0020858 | five_prime_UTR | 81730 | 82007 | 81730 | ID=Msa1386730-mRNA-1:five_prime_utr;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 82008 | 82060 | 82008 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 82216 | 82271 | 82216 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 83211 | 83389 | 83211 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 83875 | 83940 | 83875 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 84076 | 84201 | 84076 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 84293 | 84368 | 84293 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 84716 | 84776 | 84716 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 84856 | 84914 | 84856 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 85004 | 85111 | 85004 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 85232 | 85454 | 85232 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 85582 | 85792 | 85582 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 85896 | 86141 | 85896 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | CDS | 86236 | 86430 | 86236 | ID=Msa1386730-mRNA-1:cds;Parent=Msa1386730-mRNA-1 |
| tig0020858 | three_prime_UTR | 86431 | 86700 | 86431 | ID=Msa1386730-mRNA-1:three_prime_utr;Parent=Msa1386730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
