AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0279290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279290 MtrunA17_Chr2g0292921 99.775 445 1 0 1 445 1 445 0.0 938
Msa0279290 MtrunA17_Chr4g0051631 97.072 444 13 0 1 444 1 444 0.0 913
Msa0279290 MtrunA17_Chr1g0203181 95.814 430 18 0 1 430 1 430 0.0 849
Msa0279290 MtrunA17_Chr4g0008361 95.581 430 19 0 1 430 1 430 0.0 847
Msa0279290 MtrunA17_Chr4g0008401 95.349 430 20 0 1 430 1 430 0.0 846
Msa0279290 MtrunA17_Chr7g0255791 95.349 430 20 0 1 430 1 430 0.0 845
Msa0279290 MtrunA17_Chr3g0142731 95.139 432 19 1 1 430 1 432 0.0 841
Msa0279290 MtrunA17_Chr4g0007371 94.676 432 21 1 1 430 1 432 0.0 839
Msa0279290 MtrunA17_Chr8g0393021 91.011 445 37 2 1 442 1 445 0.0 828
Msa0279290 MtrunA17_Chr8g0386781 92.093 430 34 0 1 430 1 430 0.0 825
Msa0279290 MtrunA17_Chr8g0378821 41.935 434 242 2 1 424 1 434 2.00e-125 371
Msa0279290 MtrunA17_Chr3g0140821 41.705 434 243 2 1 424 1 434 1.06e-123 367
Msa0279290 MtrunA17_Chr4g0054511 41.475 434 244 2 1 424 1 434 3.82e-123 365
Msa0279290 MtrunA17_Chr1g0206881 41.060 453 244 3 1 443 1 440 2.34e-122 363
Msa0279290 MtrunA17_Chr7g0253411 40.553 434 248 2 1 424 1 434 3.89e-122 363
Msa0279290 MtrunA17_Chr6g0461281 40.315 444 254 2 1 433 1 444 1.18e-120 359
Msa0279290 MtrunA17_Chr2g0300671 37.813 439 262 4 1 431 1 436 6.68e-100 305
Msa0279290 MtrunA17_Chr2g0300491 37.251 451 270 5 1 442 1 447 7.83e-100 306
Msa0279290 MtrunA17_Chr7g0275431 35.388 438 266 7 2 423 3 439 4.09e-97 299
Msa0279290 MtrunA17_Chr3g0109241 31.111 135 85 1 269 395 4 138 1.08e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279290 AT5G23860.2 96.047 430 17 0 1 430 1 430 0.0 851
Msa0279290 AT5G23860.1 96.047 430 17 0 1 430 1 430 0.0 851
Msa0279290 AT2G29550.1 95.824 431 18 0 1 431 1 431 0.0 848
Msa0279290 AT5G44340.1 96.047 430 17 0 1 430 1 430 0.0 848
Msa0279290 AT5G62690.1 95.581 430 19 0 1 430 1 430 0.0 847
Msa0279290 AT1G75780.1 95.128 431 20 1 1 430 1 431 0.0 847
Msa0279290 AT5G62700.1 95.581 430 19 0 1 430 1 430 0.0 847
Msa0279290 AT5G12250.1 95.349 430 20 0 1 430 1 430 0.0 847
Msa0279290 AT1G20010.1 94.896 431 21 1 1 430 1 431 0.0 844
Msa0279290 AT4G20890.1 95.581 430 19 0 1 430 1 430 0.0 842
Msa0279290 AT1G64740.1 41.475 434 244 2 1 424 1 434 5.02e-125 370
Msa0279290 AT5G19780.1 41.475 434 244 2 1 424 1 434 1.75e-124 369
Msa0279290 AT5G19770.1 41.475 434 244 2 1 424 1 434 1.75e-124 369
Msa0279290 AT4G14960.2 41.705 434 243 2 1 424 1 434 1.22e-122 364
Msa0279290 AT1G50010.1 41.475 434 244 2 1 424 1 434 8.67e-122 362
Msa0279290 AT1G04820.1 41.475 434 244 2 1 424 1 434 8.67e-122 362
Msa0279290 AT4G14960.1 41.710 386 215 2 1 376 1 386 4.43e-103 313
Msa0279290 AT5G05620.1 35.160 438 267 7 2 423 3 439 5.58e-96 297
Msa0279290 AT3G61650.1 35.160 438 267 7 2 423 3 439 9.98e-96 296

Find 155 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAAATTATGGAAAATTT+AGG 0.108177 2_3:-13009470 None:intergenic
GCAAATTACTTCCCAGAATT+TGG 0.120800 2_3:-13009551 None:intergenic
ACCAAATCGGCGCCAAATTC+TGG 0.170796 2_3:+13009539 Msa0279290:CDS
GTCTTGGATGTTTGTAATAA+TGG 0.193362 2_3:+13012522 Msa0279290:three_prime_UTR
CGTTCCTCGCGCAGTTCTTA+TGG 0.197653 2_3:+13009675 Msa0279290:CDS
CCCTCGGCTCCATTTCTTCA+TGG 0.204912 2_3:+13011784 Msa0279290:CDS
AGTCTGGTGCTGGGAATAAT+TGG 0.228762 2_3:+13009779 Msa0279290:CDS
ATTGAATTTGAAGGAATAAA+TGG 0.238771 2_3:-13009390 None:intergenic
GGATCTTGAACCTGGTACTA+TGG 0.258147 2_3:+13009696 Msa0279290:CDS
ATTAATTGCATCGTCTAAAC+TGG 0.271841 2_3:+13012464 Msa0279290:three_prime_UTR
GGAAAATTATGGAAAATTTA+GGG 0.294511 2_3:-13009469 None:intergenic
CCCAGAATTTGGCGCCGATT+TGG 0.298478 2_3:-13009540 None:intergenic
GGCTCCATTTCTTCATGGTT+GGG 0.301010 2_3:+13011789 Msa0279290:CDS
CGGCTCCATTTCTTCATGGT+TGG 0.309752 2_3:+13011788 Msa0279290:CDS
TAATGGTGGGGAGGATTTAA+AGG 0.315638 2_3:-13009359 None:intergenic
ACGCTGGACTTAACATTATT+CGG 0.327915 2_3:-13012040 None:intergenic
CACATCTGCTGAGTCAATTC+TGG 0.333508 2_3:-13011863 None:intergenic
CTCTTTATGATATTTGCTTC+AGG 0.340074 2_3:+13010635 Msa0279290:CDS
ACAGAAAGCGTCGCATTATA+CGG 0.351592 2_3:-13010562 None:intergenic
ATTTCAAGTGTGTCATTCAT+TGG 0.357158 2_3:+13010414 Msa0279290:CDS
TTGGGAGGTGGCACAGGTTC+AGG 0.362037 2_3:+13010433 Msa0279290:CDS
CAGTTGCATCCTGGTATTGC+TGG 0.365353 2_3:-13012270 None:intergenic
CTTCAATCCAGGAGATGTTC+AGG 0.379033 2_3:+13012119 Msa0279290:CDS
TCCGTTAGATCCGGTCCGTT+TGG 0.380209 2_3:+13009721 Msa0279290:CDS
ATCAATAAGCTCAGCGCCTT+CGG 0.385551 2_3:-13009818 None:intergenic
CAGTCAAAGCACGATATTGC+TGG 0.398688 2_3:-13011838 None:intergenic
CGCATTGTCCGCCTTGGATG+TGG 0.401436 2_3:-13009513 None:intergenic
GCCTTCGGTATAATGACCTT+TGG 0.402288 2_3:-13009803 None:intergenic
TGTTCTTGACATTAAAGTCT+TGG 0.409273 2_3:+13012506 Msa0279290:three_prime_UTR
TTCGAATATATAAATATAGT+TGG 0.414040 2_3:+13012369 Msa0279290:three_prime_UTR
CATTCATTGGGAGGTGGCAC+AGG 0.421362 2_3:+13010427 Msa0279290:CDS
CCAAATCGGCGCCAAATTCT+GGG 0.428149 2_3:+13009540 Msa0279290:CDS
GATACGTTCAAGTTGAAGTT+CGG 0.429716 2_3:-13009617 None:intergenic
GATGCCATCTTAAGGCCCTT+TGG 0.431347 2_3:-13012076 None:intergenic
TTTCAAGTGTGTCATTCATT+GGG 0.439707 2_3:+13010415 Msa0279290:CDS
GGTTCCCGCATTGTCCGCCT+TGG 0.446623 2_3:-13009519 None:intergenic
CAAACCCAACCATGAAGAAA+TGG 0.447291 2_3:-13011793 None:intergenic
TGGCAGAAATGAGGTGGTTA+AGG 0.448615 2_3:-13011676 None:intergenic
AGATCAGAGTTCAGTTGTCC+AGG 0.449289 2_3:-13011731 None:intergenic
GGCGCAAGGCTTTCTTGCAT+TGG 0.449590 2_3:+13012173 Msa0279290:CDS
GTCTGGTGCTGGGAATAATT+GGG 0.450039 2_3:+13009780 Msa0279290:CDS
TGGTGGGGAGGATTTAAAGG+AGG 0.463167 2_3:-13009356 None:intergenic
TAACTCTCCTGAACATCTCC+TGG 0.465563 2_3:-13012126 None:intergenic
TGAAGAAGATTATGAGGAGG+AGG 0.466638 2_3:+13012297 Msa0279290:CDS
AAGAAATGGAGCCGAGGGAA+TGG 0.467627 2_3:-13011779 None:intergenic
TGAAAGTTGATGCCATCTTA+AGG 0.468989 2_3:-13012084 None:intergenic
TTATGAGGAGGAGGAAGAAG+AGG 0.470105 2_3:+13012306 Msa0279290:CDS
TTCGGTGTTTCCTTCACCCA+AGG 0.473114 2_3:+13010519 Msa0279290:CDS
TGGTGAGGGAATGGACGAAA+TGG 0.473534 2_3:+13012201 Msa0279290:CDS
TGCTGATGAAGAAGATTATG+AGG 0.473819 2_3:+13012291 Msa0279290:CDS
CTTCATCAGCAGTTGCATCC+TGG 0.482279 2_3:-13012279 None:intergenic
AGAAATGGAGCCGAGGGAAT+GGG 0.483513 2_3:-13011778 None:intergenic
AATGTATATACACATGGAAA+AGG 0.483853 2_3:-13012607 None:intergenic
CTGGGATCCTCTTGATGTCA+AGG 0.487363 2_3:-13011819 None:intergenic
CACAGCTATGTTTAGGCGCA+AGG 0.489129 2_3:+13012159 Msa0279290:CDS
GGTGGCACAGGTTCAGGCAT+GGG 0.492835 2_3:+13010439 Msa0279290:CDS
GGACAATGCGGGAACCAAAT+CGG 0.495801 2_3:+13009526 Msa0279290:CDS
TGTAAAAGGAGGGAAGGAAC+GGG 0.496181 2_3:-13009429 None:intergenic
GCTTTCTTGCATTGGTACAC+TGG 0.499379 2_3:+13012181 Msa0279290:CDS
TGAGGAGGAGGAAGAAGAGG+AGG 0.500111 2_3:+13012309 Msa0279290:CDS
CTCATTTCTGCCACCATGAG+TGG 0.501025 2_3:+13011686 Msa0279290:CDS
TATACACATGGAAAAGGAAA+AGG 0.501475 2_3:-13012601 None:intergenic
GTGGGGAGGATTTAAAGGAG+GGG 0.505927 2_3:-13009354 None:intergenic
CGGTAATTCAACTTCAATCC+AGG 0.506516 2_3:+13012108 Msa0279290:CDS
ACATCCAAGGCGGACAATGC+GGG 0.508092 2_3:+13009515 Msa0279290:CDS
GTCAAATAACGGCCATGGCG+TGG 0.509186 2_3:-13011917 None:intergenic
GAAGATTCGAGAAGAATATC+CGG 0.509806 2_3:+13010477 Msa0279290:CDS
CAGAATTGACTCAGCAGATG+TGG 0.510255 2_3:+13011864 Msa0279290:CDS
GCCATCTTAAGGCCCTTTGG+AGG 0.510700 2_3:-13012073 None:intergenic
CCCTCCAAAGGGCCTTAAGA+TGG 0.511488 2_3:+13012072 Msa0279290:CDS
TTCACCCAAGGTGTCAGATA+CGG 0.517926 2_3:+13010531 Msa0279290:CDS
AATTTCGTTTGAATGACAAA+TGG 0.519145 2_3:+13012673 Msa0279290:three_prime_UTR
AGGTGGCACAGGTTCAGGCA+TGG 0.521198 2_3:+13010438 Msa0279290:CDS
TGCCCGAAAACAAAATTATC+CGG 0.522234 2_3:-13009757 None:intergenic
CACAACCGTATCTGACACCT+TGG 0.522651 2_3:-13010536 None:intergenic
ATGTAAAAGGAGGGAAGGAA+CGG 0.524028 2_3:-13009430 None:intergenic
ATCCTGGTATTGCTGGTACT+CGG 0.525447 2_3:-13012263 None:intergenic
ACTTGTTGTCTACGTTTCCC+TGG 0.525887 2_3:+13011713 Msa0279290:CDS
TTGCATTGGTACACTGGTGA+GGG 0.526145 2_3:+13012187 Msa0279290:CDS
ACCAAACGGACCGGATCTAA+CGG 0.534715 2_3:-13009722 None:intergenic
GTATATATATATTCAATACA+TGG 0.535588 2_3:-13012648 None:intergenic
ACTCTTCATACTTTGTTGAG+TGG 0.537980 2_3:+13012014 Msa0279290:CDS
TATAGTTGGCTTTGCGCGAG+TGG 0.543351 2_3:+13012383 Msa0279290:three_prime_UTR
GGTGGGGAGGATTTAAAGGA+GGG 0.543741 2_3:-13009355 None:intergenic
AGCAGTTCACAGCTATGTTT+AGG 0.544065 2_3:+13012152 Msa0279290:CDS
TTGCTGACGCAGTCAAATAA+CGG 0.547258 2_3:-13011928 None:intergenic
CTAACGGAATCCATAGTACC+AGG 0.550782 2_3:-13009706 None:intergenic
CTTGCATTGGTACACTGGTG+AGG 0.554328 2_3:+13012186 Msa0279290:CDS
TGCAGATGAATGCATGGTGT+TGG 0.555555 2_3:+13010603 Msa0279290:CDS
TTTGAAGGAATAAATGGAAG+GGG 0.555985 2_3:-13009384 None:intergenic
GAGAATTGTGATTGCTTGCA+AGG 0.556092 2_3:+13009871 Msa0279290:CDS
CAAGTGTGTCATTCATTGGG+AGG 0.556985 2_3:+13010418 Msa0279290:CDS
GAGGAGGAGGAAGAAGAGGA+GGG 0.559856 2_3:+13012310 Msa0279290:CDS
AAGATGGCATCAACTTTCAT+CGG 0.560023 2_3:+13012088 Msa0279290:CDS
GGACGAAAGATCTGACCAAA+CGG 0.560082 2_3:-13009736 None:intergenic
AGGAACGTACCTTCCACCAC+TGG 0.560380 2_3:-13009659 None:intergenic
CACTCATGGTGGCAGAAATG+AGG 0.560878 2_3:-13011685 None:intergenic
ACTATGGATTCCGTTAGATC+CGG 0.561697 2_3:+13009712 Msa0279290:CDS
AAGATCATTCATGTTACTCT+CGG 0.562469 2_3:-13012236 None:intergenic
CCATGAAGAAATGGAGCCGA+GGG 0.563071 2_3:-13011784 None:intergenic
GTTTGGTCAGATCTTTCGTC+CGG 0.564080 2_3:+13009738 Msa0279290:CDS
AACGTCAACATCATACGATC+CGG 0.564605 2_3:-13010496 None:intergenic
TTGGTACACTGGTGAGGGAA+TGG 0.566170 2_3:+13012192 Msa0279290:CDS
TTGTGATGTAAAAGGAGGGA+AGG 0.566392 2_3:-13009435 None:intergenic
TGCCGAGTACCAGCAATACC+AGG 0.566663 2_3:+13012261 Msa0279290:CDS
TGGGATCCTCTTGATGTCAA+GGG 0.572629 2_3:-13011818 None:intergenic
GTTCTTATGGATCTTGAACC+TGG 0.573484 2_3:+13009688 Msa0279290:CDS
TTAATTGCATCGTCTAAACT+GGG 0.573565 2_3:+13012465 Msa0279290:three_prime_UTR
GAAGTAATTTGCGACGAACA+CGG 0.575225 2_3:+13009562 Msa0279290:CDS
GCCAAAGGTCATTATACCGA+AGG 0.575459 2_3:+13009802 Msa0279290:CDS
GCTGGGAATAATTGGGCCAA+AGG 0.582199 2_3:+13009787 Msa0279290:CDS
CCATCTTAAGGCCCTTTGGA+GGG 0.583809 2_3:-13012072 None:intergenic
GTGTGTCATTCATTGGGAGG+TGG 0.584446 2_3:+13010421 Msa0279290:CDS
TCAATCTTATCCCATTCCCT+CGG 0.585031 2_3:+13011768 Msa0279290:CDS
AATTTGAAGGAATAAATGGA+AGG 0.586500 2_3:-13009386 None:intergenic
ACCATGAAGAAATGGAGCCG+AGG 0.587475 2_3:-13011785 None:intergenic
AAAGATCTGACCAAACGGAC+CGG 0.588290 2_3:-13009731 None:intergenic
GTGTGTGATATCCCTCCAAA+GGG 0.589516 2_3:+13012061 Msa0279290:CDS
CGTGTGTGATATCCCTCCAA+AGG 0.592462 2_3:+13012060 Msa0279290:CDS
CACATCCAAGGCGGACAATG+CGG 0.592637 2_3:+13009514 Msa0279290:CDS
TTTGCACCCTTGACATCAAG+AGG 0.593193 2_3:+13011812 Msa0279290:CDS
AGAGAAATCCTCCACATCCA+AGG 0.593831 2_3:+13009502 Msa0279290:CDS
GTATCTGACACCTTGGGTGA+AGG 0.595746 2_3:-13010529 None:intergenic
AGTCAAAGCACGATATTGCT+GGG 0.595864 2_3:-13011837 None:intergenic
ATTTGAAGGAATAAATGGAA+GGG 0.596849 2_3:-13009385 None:intergenic
ACAACCGTATCTGACACCTT+GGG 0.598505 2_3:-13010535 None:intergenic
ACGCAGTCAAATAACGGCCA+TGG 0.600585 2_3:-13011922 None:intergenic
AAAAGGAGGGAAGGAACGGG+TGG 0.602432 2_3:-13009426 None:intergenic
ATTGTCCGCCTTGGATGTGG+AGG 0.602768 2_3:-13009510 None:intergenic
ACAACAAGTAACTCCACTCA+TGG 0.605542 2_3:-13011699 None:intergenic
CAAGGTGTCAGATACGGTTG+TGG 0.608854 2_3:+13010537 Msa0279290:CDS
GATCAGAGTTCAGTTGTCCA+GGG 0.611123 2_3:-13011730 None:intergenic
TAATTGTGGGGTTGTACTCG+AGG 0.611164 2_3:-13009323 None:intergenic
ACAATGAAGCCAGTGGTGGA+AGG 0.613831 2_3:+13009650 Msa0279290:CDS
TTTGTTGTGATGTAAAAGGA+GGG 0.618219 2_3:-13009439 None:intergenic
TTGAAGGAATAAATGGAAGG+GGG 0.623829 2_3:-13009383 None:intergenic
TATTACAATGAAGCCAGTGG+TGG 0.624350 2_3:+13009646 Msa0279290:CDS
CCTTTGTGCTCATCTTACCA+CGG 0.624983 2_3:-13011955 None:intergenic
CATGGAAAAGGAAAAGGCCA+AGG 0.626140 2_3:-13012595 None:intergenic
TGATGAAGAAGATTATGAGG+AGG 0.636972 2_3:+13012294 Msa0279290:CDS
AGAATTGACTCAGCAGATGT+GGG 0.640891 2_3:+13011865 Msa0279290:CDS
TGTGCTGCTGATCCACGCCA+TGG 0.648902 2_3:+13011905 Msa0279290:CDS
AATTGTGGGGTTGTACTCGA+GGG 0.651489 2_3:-13009322 None:intergenic
GTCTATTACAATGAAGCCAG+TGG 0.654009 2_3:+13009643 Msa0279290:CDS
TCATGGTGGCAGAAATGAGG+TGG 0.661184 2_3:-13011682 None:intergenic
ACTGCGTCAGCAATGTTCCG+TGG 0.663759 2_3:+13011938 Msa0279290:CDS
TGAGAATGCAGATGAATGCA+TGG 0.686010 2_3:+13010597 Msa0279290:CDS
ACAAGTAACTCCACTCATGG+TGG 0.692823 2_3:-13011696 None:intergenic
CCGTGGTAAGATGAGCACAA+AGG 0.695473 2_3:+13011955 Msa0279290:CDS
AGATCCATAAGAACTGCGCG+AGG 0.695898 2_3:-13009679 None:intergenic
GATCACACCGGAAAATACAA+CGG 0.700192 2_3:+13009589 Msa0279290:CDS
TGGAGGGATATCACACACGC+TGG 0.710702 2_3:-13012056 None:intergenic
GAAATCCTCCACATCCAAGG+CGG 0.734127 2_3:+13009505 Msa0279290:CDS
GGACGAAATGGAGTTCACTG+AGG 0.756207 2_3:+13012213 Msa0279290:CDS
GAACACGGAATTGATCACAC+CGG 0.763914 2_3:+13009577 Msa0279290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATGATTATGAATTTTTA+TGG + chr2_3:13010360-13010379 Msa0279290:intron 10.0%
!!! TGTATTAACATTTTTTATAT+AGG + chr2_3:13011124-13011143 Msa0279290:intron 10.0%
!!! ATGAATTACTATTGTTATTT+AGG + chr2_3:13010328-13010347 Msa0279290:intron 15.0%
!!! AATTTTGATGTGATTAATTT+AGG + chr2_3:13010706-13010725 Msa0279290:intron 15.0%
!! TGTTATATGTTATGTAAATA+TGG + chr2_3:13010907-13010926 Msa0279290:intron 15.0%
!! TTCAATTAACAAATGAAATT+TGG + chr2_3:13011434-13011453 Msa0279290:intron 15.0%
!! TTCGAATATATAAATATAGT+TGG + chr2_3:13012369-13012388 Msa0279290:three_prime_UTR 15.0%
!!! ATGTGTATATACATTTTTTT+GGG + chr2_3:13012615-13012634 Msa0279290:three_prime_UTR 15.0%
!! GTATATATATATTCAATACA+TGG - chr2_3:13012651-13012670 None:intergenic 15.0%
!! ATTGAATTTGAAGGAATAAA+TGG - chr2_3:13009393-13009412 None:intergenic 20.0%
!! GGAAAATTATGGAAAATTTA+GGG - chr2_3:13009472-13009491 None:intergenic 20.0%
!!! TTCTATTTGATTTGAATGAA+TGG + chr2_3:13010096-13010115 Msa0279290:intron 20.0%
!! AAATTAAAAAACTTACACGT+TGG - chr2_3:13010679-13010698 None:intergenic 20.0%
!! ATCTAATCTGAATAACATTT+GGG - chr2_3:13010811-13010830 None:intergenic 20.0%
!! AATCTAATCTGAATAACATT+TGG - chr2_3:13010812-13010831 None:intergenic 20.0%
!!! AACATTTTTTATATAGGTAG+TGG + chr2_3:13011130-13011149 Msa0279290:intron 20.0%
!! TAGTAATTGATATGTTAACA+TGG + chr2_3:13011405-13011424 Msa0279290:intron 20.0%
!! ATTAAACACGATTATATTGA+TGG + chr2_3:13011457-13011476 Msa0279290:intron 20.0%
!! TTAAACACGATTATATTGAT+GGG + chr2_3:13011458-13011477 Msa0279290:intron 20.0%
!!! CTTGATTTTATTATTTCAGT+TGG + chr2_3:13011650-13011669 Msa0279290:intron 20.0%
!! CAAAAAAATGTATATACACA+TGG - chr2_3:13012616-13012635 None:intergenic 20.0%
!!! CATGTGTATATACATTTTTT+TGG + chr2_3:13012614-13012633 Msa0279290:three_prime_UTR 20.0%
!!! TGTGTATATACATTTTTTTG+GGG + chr2_3:13012616-13012635 Msa0279290:three_prime_UTR 20.0%
! ATTTGAAGGAATAAATGGAA+GGG - chr2_3:13009388-13009407 None:intergenic 25.0%
! AATTTGAAGGAATAAATGGA+AGG - chr2_3:13009389-13009408 None:intergenic 25.0%
!!! GATGTTTTGATTGAATTTGA+AGG - chr2_3:13009402-13009421 None:intergenic 25.0%
!!! TGATTTTGTTGTGATGTAAA+AGG - chr2_3:13009446-13009465 None:intergenic 25.0%
! GGGAAAATTATGGAAAATTT+AGG - chr2_3:13009473-13009492 None:intergenic 25.0%
!!! CGATGTTGAATATCATTTTT+TGG + chr2_3:13010154-13010173 Msa0279290:intron 25.0%
! AAAAAACTCACAGCATAAAA+CGG - chr2_3:13010237-13010256 None:intergenic 25.0%
! TCATATAGCTAATGTTAACA+AGG + chr2_3:13011225-13011244 Msa0279290:intron 25.0%
!!! ACTTTATTTGCACTTTTAGT+TGG + chr2_3:13011603-13011622 Msa0279290:intron 25.0%
! AATGTATATACACATGGAAA+AGG - chr2_3:13012610-13012629 None:intergenic 25.0%
!!! GTGTATATACATTTTTTTGG+GGG + chr2_3:13012617-13012636 Msa0279290:three_prime_UTR 25.0%
! AATTTCGTTTGAATGACAAA+TGG + chr2_3:13012673-13012692 Msa0279290:three_prime_UTR 25.0%
TTTGAAGGAATAAATGGAAG+GGG - chr2_3:13009387-13009406 None:intergenic 30.0%
! TTTGTTGTGATGTAAAAGGA+GGG - chr2_3:13009442-13009461 None:intergenic 30.0%
!! TTTTGTTGTGATGTAAAAGG+AGG - chr2_3:13009443-13009462 None:intergenic 30.0%
! TCATTTTCTCGGGAAAATTA+TGG - chr2_3:13009483-13009502 None:intergenic 30.0%
!!! TGAATTTGTGTTGTTTTGAG+AGG + chr2_3:13009938-13009957 Msa0279290:intron 30.0%
GAAAATTATGATTGCTTGCA+AGG + chr2_3:13010203-13010222 Msa0279290:intron 30.0%
AACATCGCTAAAAACGAAAA+AGG - chr2_3:13010271-13010290 None:intergenic 30.0%
!!! GTTCTGATTATTTTTGTGTG+TGG + chr2_3:13010387-13010406 Msa0279290:intron 30.0%
! ATTTCAAGTGTGTCATTCAT+TGG + chr2_3:13010414-13010433 Msa0279290:CDS 30.0%
! TTTCAAGTGTGTCATTCATT+GGG + chr2_3:13010415-13010434 Msa0279290:CDS 30.0%
CTCTTTATGATATTTGCTTC+AGG + chr2_3:13010635-13010654 Msa0279290:CDS 30.0%
TTATATGATGTTGTCTGAGT+TGG + chr2_3:13010743-13010762 Msa0279290:intron 30.0%
GACACATTAAGAAAAACTGT+AGG + chr2_3:13010976-13010995 Msa0279290:intron 30.0%
!! TATATAGGTAGTGGAAGATT+AGG + chr2_3:13011139-13011158 Msa0279290:intron 30.0%
TAGCTAATGTTAACAAGGAA+AGG + chr2_3:13011230-13011249 Msa0279290:intron 30.0%
TTGAATTTCTGCCATCAATT+TGG + chr2_3:13011545-13011564 Msa0279290:intron 30.0%
AAGATCATTCATGTTACTCT+CGG - chr2_3:13012239-13012258 None:intergenic 30.0%
ATTAATTGCATCGTCTAAAC+TGG + chr2_3:13012464-13012483 Msa0279290:three_prime_UTR 30.0%
TTAATTGCATCGTCTAAACT+GGG + chr2_3:13012465-13012484 Msa0279290:three_prime_UTR 30.0%
TGTTCTTGACATTAAAGTCT+TGG + chr2_3:13012506-13012525 Msa0279290:three_prime_UTR 30.0%
GTCTTGGATGTTTGTAATAA+TGG + chr2_3:13012522-13012541 Msa0279290:three_prime_UTR 30.0%
!!! CTTGTTTGCTTTTTTAACCT+TGG + chr2_3:13012578-13012597 Msa0279290:three_prime_UTR 30.0%
TATACACATGGAAAAGGAAA+AGG - chr2_3:13012604-13012623 None:intergenic 30.0%
! AGGGGTTTTTGTGTAATTGT+GGG - chr2_3:13009339-13009358 None:intergenic 35.0%
AATAAATGGAAGGGGGTTAA+TGG - chr2_3:13009379-13009398 None:intergenic 35.0%
TTGAAGGAATAAATGGAAGG+GGG - chr2_3:13009386-13009405 None:intergenic 35.0%
! AGGATTTCTCTCATTTTCTC+GGG - chr2_3:13009493-13009512 None:intergenic 35.0%
! GAGGATTTCTCTCATTTTCT+CGG - chr2_3:13009494-13009513 None:intergenic 35.0%
GCAAATTACTTCCCAGAATT+TGG - chr2_3:13009554-13009573 None:intergenic 35.0%
!! GATACGTTCAAGTTGAAGTT+CGG - chr2_3:13009620-13009639 None:intergenic 35.0%
!!! CGTCCGGATAATTTTGTTTT+CGG + chr2_3:13009754-13009773 Msa0279290:CDS 35.0%
!!! GTCCGGATAATTTTGTTTTC+GGG + chr2_3:13009755-13009774 Msa0279290:CDS 35.0%
TGCCCGAAAACAAAATTATC+CGG - chr2_3:13009760-13009779 None:intergenic 35.0%
CAACATCGCTACAAACAAAA+AGG - chr2_3:13009920-13009939 None:intergenic 35.0%
!!! TGATTATTTTTGTGTGTGGC+AGG + chr2_3:13010391-13010410 Msa0279290:intron 35.0%
GAAGATTCGAGAAGAATATC+CGG + chr2_3:13010477-13010496 Msa0279290:CDS 35.0%
! TCGTATGATGTTGACGTTTT+CGG + chr2_3:13010501-13010520 Msa0279290:CDS 35.0%
GTAAAGCTTGTCAATGAACA+TGG + chr2_3:13010998-13011017 Msa0279290:intron 35.0%
TCAATGAACATGGTTCACAA+TGG + chr2_3:13011008-13011027 Msa0279290:intron 35.0%
GGTTCACAATGGAACATTAT+AGG + chr2_3:13011019-13011038 Msa0279290:intron 35.0%
TTAACCTCACTTGTGTTAGA+AGG + chr2_3:13011060-13011079 Msa0279290:intron 35.0%
TCACTTGTGTTAGAAGGATT+CGG + chr2_3:13011066-13011085 Msa0279290:intron 35.0%
AGCAGCAACAAAACAAGAAT+GGG - chr2_3:13011301-13011320 None:intergenic 35.0%
CCACAGATAATCATGATTCA+TGG - chr2_3:13011343-13011362 None:intergenic 35.0%
CCATGAATCATGATTATCTG+TGG + chr2_3:13011340-13011359 Msa0279290:intron 35.0%
AGTTGTGTGCTACAGATAAA+CGG + chr2_3:13011375-13011394 Msa0279290:intron 35.0%
! TCTTTGTTCTTACTGATTGC+TGG + chr2_3:13011510-13011529 Msa0279290:intron 35.0%
TGACAGGATAACCAAATTGA+TGG - chr2_3:13011559-13011578 None:intergenic 35.0%
CTTCATTTAGAGAAAGTGAC+AGG - chr2_3:13011575-13011594 None:intergenic 35.0%
ACTCTTCATACTTTGTTGAG+TGG + chr2_3:13012014-13012033 Msa0279290:CDS 35.0%
ACGCTGGACTTAACATTATT+CGG - chr2_3:13012043-13012062 None:intergenic 35.0%
!! TGAAAGTTGATGCCATCTTA+AGG - chr2_3:13012087-13012106 None:intergenic 35.0%
AAGATGGCATCAACTTTCAT+CGG + chr2_3:13012088-13012107 Msa0279290:CDS 35.0%
TGCTGATGAAGAAGATTATG+AGG + chr2_3:13012291-13012310 Msa0279290:CDS 35.0%
TGATGAAGAAGATTATGAGG+AGG + chr2_3:13012294-13012313 Msa0279290:CDS 35.0%
!!! ACTCGAGGGTATTTTTGGAA+GGG - chr2_3:13009311-13009330 None:intergenic 40.0%
!!! TACTCGAGGGTATTTTTGGA+AGG - chr2_3:13009312-13009331 None:intergenic 40.0%
!!! GTTGTACTCGAGGGTATTTT+TGG - chr2_3:13009316-13009335 None:intergenic 40.0%
! GGGGTTTTTGTGTAATTGTG+GGG - chr2_3:13009338-13009357 None:intergenic 40.0%
! GAGGGGTTTTTGTGTAATTG+TGG - chr2_3:13009340-13009359 None:intergenic 40.0%
! TAATGGTGGGGAGGATTTAA+AGG - chr2_3:13009362-13009381 None:intergenic 40.0%
ATGTAAAAGGAGGGAAGGAA+CGG - chr2_3:13009433-13009452 None:intergenic 40.0%
TTGTGATGTAAAAGGAGGGA+AGG - chr2_3:13009438-13009457 None:intergenic 40.0%
! GAAGTAATTTGCGACGAACA+CGG + chr2_3:13009562-13009581 Msa0279290:CDS 40.0%
GATCACACCGGAAAATACAA+CGG + chr2_3:13009589-13009608 Msa0279290:CDS 40.0%
GTCTATTACAATGAAGCCAG+TGG + chr2_3:13009643-13009662 Msa0279290:CDS 40.0%
TATTACAATGAAGCCAGTGG+TGG + chr2_3:13009646-13009665 Msa0279290:CDS 40.0%
GTTCTTATGGATCTTGAACC+TGG + chr2_3:13009688-13009707 Msa0279290:CDS 40.0%
ACTATGGATTCCGTTAGATC+CGG + chr2_3:13009712-13009731 Msa0279290:CDS 40.0%
!!! AATTTTGTTTTCGGGCAGTC+TGG + chr2_3:13009763-13009782 Msa0279290:CDS 40.0%
GAGAATTGTGATTGCTTGCA+AGG + chr2_3:13009871-13009890 Msa0279290:CDS 40.0%
AACGTCAACATCATACGATC+CGG - chr2_3:13010499-13010518 None:intergenic 40.0%
!! ACAGAAAGCGTCGCATTATA+CGG - chr2_3:13010565-13010584 None:intergenic 40.0%
TGAGAATGCAGATGAATGCA+TGG + chr2_3:13010597-13010616 Msa0279290:CDS 40.0%
!! ATAGTTGATAGACGCAAAGC+TGG + chr2_3:13010838-13010857 Msa0279290:intron 40.0%
!! TAGTTGATAGACGCAAAGCT+GGG + chr2_3:13010839-13010858 Msa0279290:intron 40.0%
AAGCTGGGTAGGATTAAGAA+TGG + chr2_3:13010854-13010873 Msa0279290:intron 40.0%
GAATCCTTCTAACACAAGTG+AGG - chr2_3:13011067-13011086 None:intergenic 40.0%
CAGCAGCAACAAAACAAGAA+TGG - chr2_3:13011302-13011321 None:intergenic 40.0%
GATTATATTGATGGGACCGT+GGG + chr2_3:13011466-13011485 Msa0279290:intron 40.0%
! TTGTTCTTACTGATTGCTGG+TGG + chr2_3:13011513-13011532 Msa0279290:intron 40.0%
ACAACAAGTAACTCCACTCA+TGG - chr2_3:13011702-13011721 None:intergenic 40.0%
TCAATCTTATCCCATTCCCT+CGG + chr2_3:13011768-13011787 Msa0279290:CDS 40.0%
CAAACCCAACCATGAAGAAA+TGG - chr2_3:13011796-13011815 None:intergenic 40.0%
AGTCAAAGCACGATATTGCT+GGG - chr2_3:13011840-13011859 None:intergenic 40.0%
! AGAATTGACTCAGCAGATGT+GGG + chr2_3:13011865-13011884 Msa0279290:CDS 40.0%
TTGCTGACGCAGTCAAATAA+CGG - chr2_3:13011931-13011950 None:intergenic 40.0%
CGGTAATTCAACTTCAATCC+AGG + chr2_3:13012108-13012127 Msa0279290:CDS 40.0%
AGCAGTTCACAGCTATGTTT+AGG + chr2_3:13012152-13012171 Msa0279290:CDS 40.0%
TGAAGAAGATTATGAGGAGG+AGG + chr2_3:13012297-13012316 Msa0279290:CDS 40.0%
AATTGTGGGGTTGTACTCGA+GGG - chr2_3:13009325-13009344 None:intergenic 45.0%
TAATTGTGGGGTTGTACTCG+AGG - chr2_3:13009326-13009345 None:intergenic 45.0%
AATGGAAGGGGGTTAATGGT+GGG - chr2_3:13009375-13009394 None:intergenic 45.0%
AAATGGAAGGGGGTTAATGG+TGG - chr2_3:13009376-13009395 None:intergenic 45.0%
TGTAAAAGGAGGGAAGGAAC+GGG - chr2_3:13009432-13009451 None:intergenic 45.0%
AGAGAAATCCTCCACATCCA+AGG + chr2_3:13009502-13009521 Msa0279290:CDS 45.0%
GAACACGGAATTGATCACAC+CGG + chr2_3:13009577-13009596 Msa0279290:CDS 45.0%
! GGAATCGCCGTTGTATTTTC+CGG - chr2_3:13009599-13009618 None:intergenic 45.0%
GGATCTTGAACCTGGTACTA+TGG + chr2_3:13009696-13009715 Msa0279290:CDS 45.0%
CTAACGGAATCCATAGTACC+AGG - chr2_3:13009709-13009728 None:intergenic 45.0%
AAAGATCTGACCAAACGGAC+CGG - chr2_3:13009734-13009753 None:intergenic 45.0%
GGACGAAAGATCTGACCAAA+CGG - chr2_3:13009739-13009758 None:intergenic 45.0%
GTTTGGTCAGATCTTTCGTC+CGG + chr2_3:13009738-13009757 Msa0279290:CDS 45.0%
! AGTCTGGTGCTGGGAATAAT+TGG + chr2_3:13009779-13009798 Msa0279290:CDS 45.0%
! GTCTGGTGCTGGGAATAATT+GGG + chr2_3:13009780-13009799 Msa0279290:CDS 45.0%
GCCAAAGGTCATTATACCGA+AGG + chr2_3:13009802-13009821 Msa0279290:CDS 45.0%
GCCTTCGGTATAATGACCTT+TGG - chr2_3:13009806-13009825 None:intergenic 45.0%
ATCAATAAGCTCAGCGCCTT+CGG - chr2_3:13009821-13009840 None:intergenic 45.0%
! CAAGTGTGTCATTCATTGGG+AGG + chr2_3:13010418-13010437 Msa0279290:CDS 45.0%
! TTCACCCAAGGTGTCAGATA+CGG + chr2_3:13010531-13010550 Msa0279290:CDS 45.0%
ACAACCGTATCTGACACCTT+GGG - chr2_3:13010538-13010557 None:intergenic 45.0%
TGCAGATGAATGCATGGTGT+TGG + chr2_3:13010603-13010622 Msa0279290:CDS 45.0%
! CAGTACAACCTTGCTCTAGA+TGG + chr2_3:13010932-13010951 Msa0279290:intron 45.0%
! TACAACCTTGCTCTAGATGG+AGG + chr2_3:13010935-13010954 Msa0279290:intron 45.0%
! ATCTACCTCCATCTAGAGCA+AGG - chr2_3:13010943-13010962 None:intergenic 45.0%
CGATTATATTGATGGGACCG+TGG + chr2_3:13011465-13011484 Msa0279290:intron 45.0%
TGGCAGAAATGAGGTGGTTA+AGG - chr2_3:13011679-13011698 None:intergenic 45.0%
ACAAGTAACTCCACTCATGG+TGG - chr2_3:13011699-13011718 None:intergenic 45.0%
!! ACTTGTTGTCTACGTTTCCC+TGG + chr2_3:13011713-13011732 Msa0279290:CDS 45.0%
GATCAGAGTTCAGTTGTCCA+GGG - chr2_3:13011733-13011752 None:intergenic 45.0%
AGATCAGAGTTCAGTTGTCC+AGG - chr2_3:13011734-13011753 None:intergenic 45.0%
GGCTCCATTTCTTCATGGTT+GGG + chr2_3:13011789-13011808 Msa0279290:CDS 45.0%
TTTGCACCCTTGACATCAAG+AGG + chr2_3:13011812-13011831 Msa0279290:CDS 45.0%
TGGGATCCTCTTGATGTCAA+GGG - chr2_3:13011821-13011840 None:intergenic 45.0%
CAGTCAAAGCACGATATTGC+TGG - chr2_3:13011841-13011860 None:intergenic 45.0%
CACATCTGCTGAGTCAATTC+TGG - chr2_3:13011866-13011885 None:intergenic 45.0%
! CAGAATTGACTCAGCAGATG+TGG + chr2_3:13011864-13011883 Msa0279290:CDS 45.0%
CCTTTGTGCTCATCTTACCA+CGG - chr2_3:13011958-13011977 None:intergenic 45.0%
GTGTGTGATATCCCTCCAAA+GGG + chr2_3:13012061-13012080 Msa0279290:CDS 45.0%
CTTCAATCCAGGAGATGTTC+AGG + chr2_3:13012119-13012138 Msa0279290:CDS 45.0%
TAACTCTCCTGAACATCTCC+TGG - chr2_3:13012129-13012148 None:intergenic 45.0%
! GCTTTCTTGCATTGGTACAC+TGG + chr2_3:13012181-13012200 Msa0279290:CDS 45.0%
! TTGCATTGGTACACTGGTGA+GGG + chr2_3:13012187-13012206 Msa0279290:CDS 45.0%
ATCCTGGTATTGCTGGTACT+CGG - chr2_3:13012266-13012285 None:intergenic 45.0%
TTATGAGGAGGAGGAAGAAG+AGG + chr2_3:13012306-13012325 Msa0279290:CDS 45.0%
CATGGAAAAGGAAAAGGCCA+AGG - chr2_3:13012598-13012617 None:intergenic 45.0%
GTGGGGAGGATTTAAAGGAG+GGG - chr2_3:13009357-13009376 None:intergenic 50.0%
GGTGGGGAGGATTTAAAGGA+GGG - chr2_3:13009358-13009377 None:intergenic 50.0%
TGGTGGGGAGGATTTAAAGG+AGG - chr2_3:13009359-13009378 None:intergenic 50.0%
ATGGAAGGGGGTTAATGGTG+GGG - chr2_3:13009374-13009393 None:intergenic 50.0%
GAAATCCTCCACATCCAAGG+CGG + chr2_3:13009505-13009524 Msa0279290:CDS 50.0%
GGACAATGCGGGAACCAAAT+CGG + chr2_3:13009526-13009545 Msa0279290:CDS 50.0%
ACCAAATCGGCGCCAAATTC+TGG + chr2_3:13009539-13009558 Msa0279290:CDS 50.0%
CCAAATCGGCGCCAAATTCT+GGG + chr2_3:13009540-13009559 Msa0279290:CDS 50.0%
! ACAATGAAGCCAGTGGTGGA+AGG + chr2_3:13009650-13009669 Msa0279290:CDS 50.0%
AGATCCATAAGAACTGCGCG+AGG - chr2_3:13009682-13009701 None:intergenic 50.0%
ACCAAACGGACCGGATCTAA+CGG - chr2_3:13009725-13009744 None:intergenic 50.0%
GCTGGGAATAATTGGGCCAA+AGG + chr2_3:13009787-13009806 Msa0279290:CDS 50.0%
! GTGTGTCATTCATTGGGAGG+TGG + chr2_3:13010421-13010440 Msa0279290:CDS 50.0%
!! TTCGGTGTTTCCTTCACCCA+AGG + chr2_3:13010519-13010538 Msa0279290:CDS 50.0%
GTATCTGACACCTTGGGTGA+AGG - chr2_3:13010532-13010551 None:intergenic 50.0%
CACAACCGTATCTGACACCT+TGG - chr2_3:13010539-13010558 None:intergenic 50.0%
! CAAGGTGTCAGATACGGTTG+TGG + chr2_3:13010537-13010556 Msa0279290:CDS 50.0%
TGATAGACGCAAAGCTGGGT+AGG + chr2_3:13010843-13010862 Msa0279290:intron 50.0%
TATATTGATGGGACCGTGGG+AGG + chr2_3:13011469-13011488 Msa0279290:intron 50.0%
ATATTGATGGGACCGTGGGA+GGG + chr2_3:13011470-13011489 Msa0279290:intron 50.0%
! GGAGGGTTCAAGTGGGTTTA+GGG + chr2_3:13011487-13011506 Msa0279290:intron 50.0%
TCATGGTGGCAGAAATGAGG+TGG - chr2_3:13011685-13011704 None:intergenic 50.0%
CACTCATGGTGGCAGAAATG+AGG - chr2_3:13011688-13011707 None:intergenic 50.0%
CTCATTTCTGCCACCATGAG+TGG + chr2_3:13011686-13011705 Msa0279290:CDS 50.0%
AGAAATGGAGCCGAGGGAAT+GGG - chr2_3:13011781-13011800 None:intergenic 50.0%
AAGAAATGGAGCCGAGGGAA+TGG - chr2_3:13011782-13011801 None:intergenic 50.0%
CCATGAAGAAATGGAGCCGA+GGG - chr2_3:13011787-13011806 None:intergenic 50.0%
ACCATGAAGAAATGGAGCCG+AGG - chr2_3:13011788-13011807 None:intergenic 50.0%
CGGCTCCATTTCTTCATGGT+TGG + chr2_3:13011788-13011807 Msa0279290:CDS 50.0%
CTGGGATCCTCTTGATGTCA+AGG - chr2_3:13011822-13011841 None:intergenic 50.0%
ACGCAGTCAAATAACGGCCA+TGG - chr2_3:13011925-13011944 None:intergenic 50.0%
CCGTGGTAAGATGAGCACAA+AGG + chr2_3:13011955-13011974 Msa0279290:CDS 50.0%
CGTGTGTGATATCCCTCCAA+AGG + chr2_3:13012060-13012079 Msa0279290:CDS 50.0%
CCATCTTAAGGCCCTTTGGA+GGG - chr2_3:13012075-13012094 None:intergenic 50.0%
GATGCCATCTTAAGGCCCTT+TGG - chr2_3:13012079-13012098 None:intergenic 50.0%
CACAGCTATGTTTAGGCGCA+AGG + chr2_3:13012159-13012178 Msa0279290:CDS 50.0%
! CTTGCATTGGTACACTGGTG+AGG + chr2_3:13012186-13012205 Msa0279290:CDS 50.0%
TTGGTACACTGGTGAGGGAA+TGG + chr2_3:13012192-13012211 Msa0279290:CDS 50.0%
TGGTGAGGGAATGGACGAAA+TGG + chr2_3:13012201-13012220 Msa0279290:CDS 50.0%
GGACGAAATGGAGTTCACTG+AGG + chr2_3:13012213-13012232 Msa0279290:CDS 50.0%
CAGTTGCATCCTGGTATTGC+TGG - chr2_3:13012273-13012292 None:intergenic 50.0%
CTTCATCAGCAGTTGCATCC+TGG - chr2_3:13012282-13012301 None:intergenic 50.0%
!! TATAGTTGGCTTTGCGCGAG+TGG + chr2_3:13012383-13012402 Msa0279290:three_prime_UTR 50.0%
AAAAGGAGGGAAGGAACGGG+TGG - chr2_3:13009429-13009448 None:intergenic 55.0%
ATTGTCCGCCTTGGATGTGG+AGG - chr2_3:13009513-13009532 None:intergenic 55.0%
CACATCCAAGGCGGACAATG+CGG + chr2_3:13009514-13009533 Msa0279290:CDS 55.0%
ACATCCAAGGCGGACAATGC+GGG + chr2_3:13009515-13009534 Msa0279290:CDS 55.0%
!! CCCAGAATTTGGCGCCGATT+TGG - chr2_3:13009543-13009562 None:intergenic 55.0%
AGGAACGTACCTTCCACCAC+TGG - chr2_3:13009662-13009681 None:intergenic 55.0%
CGTTCCTCGCGCAGTTCTTA+TGG + chr2_3:13009675-13009694 Msa0279290:CDS 55.0%
TCCGTTAGATCCGGTCCGTT+TGG + chr2_3:13009721-13009740 Msa0279290:CDS 55.0%
!! TTTTCGGGCAGTCTGGTGCT+GGG + chr2_3:13009770-13009789 Msa0279290:CDS 55.0%
CATTCATTGGGAGGTGGCAC+AGG + chr2_3:13010427-13010446 Msa0279290:CDS 55.0%
AACCCACTTGAACCCTCCCA+CGG - chr2_3:13011485-13011504 None:intergenic 55.0%
! GGGAGGGTTCAAGTGGGTTT+AGG + chr2_3:13011486-13011505 Msa0279290:intron 55.0%
CCCTCGGCTCCATTTCTTCA+TGG + chr2_3:13011784-13011803 Msa0279290:CDS 55.0%
GTCAAATAACGGCCATGGCG+TGG - chr2_3:13011920-13011939 None:intergenic 55.0%
ACTGCGTCAGCAATGTTCCG+TGG + chr2_3:13011938-13011957 Msa0279290:CDS 55.0%
TGGAGGGATATCACACACGC+TGG - chr2_3:13012059-13012078 None:intergenic 55.0%
CCCTCCAAAGGGCCTTAAGA+TGG + chr2_3:13012072-13012091 Msa0279290:CDS 55.0%
GCCATCTTAAGGCCCTTTGG+AGG - chr2_3:13012076-13012095 None:intergenic 55.0%
GGCGCAAGGCTTTCTTGCAT+TGG + chr2_3:13012173-13012192 Msa0279290:CDS 55.0%
TGCCGAGTACCAGCAATACC+AGG + chr2_3:13012261-13012280 Msa0279290:CDS 55.0%
TGAGGAGGAGGAAGAAGAGG+AGG + chr2_3:13012309-13012328 Msa0279290:CDS 55.0%
GAGGAGGAGGAAGAAGAGGA+GGG + chr2_3:13012310-13012329 Msa0279290:CDS 55.0%
! GAAGGGGGTTAATGGTGGGG+AGG - chr2_3:13009371-13009390 None:intergenic 60.0%
CGCATTGTCCGCCTTGGATG+TGG - chr2_3:13009516-13009535 None:intergenic 60.0%
!! GTTTTCGGGCAGTCTGGTGC+TGG + chr2_3:13009769-13009788 Msa0279290:CDS 60.0%
TTGGGAGGTGGCACAGGTTC+AGG + chr2_3:13010433-13010452 Msa0279290:CDS 60.0%
AGGTGGCACAGGTTCAGGCA+TGG + chr2_3:13010438-13010457 Msa0279290:CDS 60.0%
GGTGGCACAGGTTCAGGCAT+GGG + chr2_3:13010439-13010458 Msa0279290:CDS 60.0%
GACCGTGGGAGGGTTCAAGT+GGG + chr2_3:13011480-13011499 Msa0279290:intron 60.0%
! TGTGCTGCTGATCCACGCCA+TGG + chr2_3:13011905-13011924 Msa0279290:CDS 60.0%
GGTTCCCGCATTGTCCGCCT+TGG - chr2_3:13009522-13009541 None:intergenic 65.0%
GGACCGTGGGAGGGTTCAAG+TGG + chr2_3:13011479-13011498 Msa0279290:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 13009301 13012704 13009301 ID=Msa0279290;Name=Msa0279290
chr2_3 mRNA 13009301 13012704 13009301 ID=Msa0279290-mRNA-1;Parent=Msa0279290;Name=Msa0279290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=198|1|1|1|1|1|3|362|445
chr2_3 exon 13009301 13009892 13009301 ID=Msa0279290-mRNA-1:exon:5637;Parent=Msa0279290-mRNA-1
chr2_3 exon 13010413 13010682 13010413 ID=Msa0279290-mRNA-1:exon:5638;Parent=Msa0279290-mRNA-1
chr2_3 exon 13011669 13012704 13011669 ID=Msa0279290-mRNA-1:exon:5639;Parent=Msa0279290-mRNA-1
chr2_3 five_prime_UTR 13009301 13009498 13009301 ID=Msa0279290-mRNA-1:five_prime_utr;Parent=Msa0279290-mRNA-1
chr2_3 CDS 13009499 13009892 13009499 ID=Msa0279290-mRNA-1:cds;Parent=Msa0279290-mRNA-1
chr2_3 CDS 13010413 13010682 13010413 ID=Msa0279290-mRNA-1:cds;Parent=Msa0279290-mRNA-1
chr2_3 CDS 13011669 13012342 13011669 ID=Msa0279290-mRNA-1:cds;Parent=Msa0279290-mRNA-1
chr2_3 three_prime_UTR 13012343 13012704 13012343 ID=Msa0279290-mRNA-1:three_prime_utr;Parent=Msa0279290-mRNA-1
Gene Sequence

>Msa0279290

ATGAGAGAAATCCTCCACATCCAAGGCGGACAATGCGGGAACCAAATCGGCGCCAAATTCTGGGAAGTAATTTGCGACGAACACGGAATTGATCACACCGGAAAATACAACGGCGATTCCGAACTTCAACTTGAACGTATCAATGTCTATTACAATGAAGCCAGTGGTGGAAGGTACGTTCCTCGCGCAGTTCTTATGGATCTTGAACCTGGTACTATGGATTCCGTTAGATCCGGTCCGTTTGGTCAGATCTTTCGTCCGGATAATTTTGTTTTCGGGCAGTCTGGTGCTGGGAATAATTGGGCCAAAGGTCATTATACCGAAGGCGCTGAGCTTATTGATTCTGTTCTTGATGTTGTTCGTAAAGAAGCTGAGAATTGTGATTGCTTGCAAGGATTTCAAGTGTGTCATTCATTGGGAGGTGGCACAGGTTCAGGCATGGGAACGCTTTTGATATCGAAGATTCGAGAAGAATATCCGGATCGTATGATGTTGACGTTTTCGGTGTTTCCTTCACCCAAGGTGTCAGATACGGTTGTGGAACCGTATAATGCGACGCTTTCTGTTCATCAACTTGTTGAGAATGCAGATGAATGCATGGTGTTGGATAATGAAGCTCTTTATGATATTTGCTTCAGGACTTTGAAGCTTGCTACGCCAACGTTTGGTGACCTTAACCACCTCATTTCTGCCACCATGAGTGGAGTTACTTGTTGTCTACGTTTCCCTGGACAACTGAACTCTGATCTTCGTAAGCTTGCTGTCAATCTTATCCCATTCCCTCGGCTCCATTTCTTCATGGTTGGGTTTGCACCCTTGACATCAAGAGGATCCCAGCAATATCGTGCTTTGACTGTACCAGAATTGACTCAGCAGATGTGGGATGCGAAGAACATGATGTGTGCTGCTGATCCACGCCATGGCCGTTATTTGACTGCGTCAGCAATGTTCCGTGGTAAGATGAGCACAAAGGAAGTAGATGAGCAGATGATCAATGTGCAAAACAAGAACTCTTCATACTTTGTTGAGTGGATACCGAATAATGTTAAGTCCAGCGTGTGTGATATCCCTCCAAAGGGCCTTAAGATGGCATCAACTTTCATCGGTAATTCAACTTCAATCCAGGAGATGTTCAGGAGAGTTAGTGAGCAGTTCACAGCTATGTTTAGGCGCAAGGCTTTCTTGCATTGGTACACTGGTGAGGGAATGGACGAAATGGAGTTCACTGAGGCCGAGAGTAACATGAATGATCTTGTTGCCGAGTACCAGCAATACCAGGATGCAACTGCTGATGAAGAAGATTATGAGGAGGAGGAAGAAGAGGAGGGTGCTGCTTAA
Protein sequence

>Msa0279290

MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEDYEEEEEEEGAA*