Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003300 | sp|Q9SIW1|BLH7_ARATH | 59.929 | 282 | 65 | 7 | 221 | 478 | 117 | 374 | 5.08e-99 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0003300 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003050 | Msa0003300 | 0.814783 | 1.292424e-51 | -8.615850e-47 |
| Msa0003300 | Msa0023840 | -0.815044 | 1.130959e-51 | -8.615850e-47 |
| Msa0003300 | Msa0026450 | 0.800450 | 1.433058e-48 | -8.615850e-47 |
| Msa0003300 | Msa0029850 | 0.834137 | 3.566160e-56 | -8.615850e-47 |
| Msa0003300 | Msa0029880 | 0.800327 | 1.518104e-48 | -8.615850e-47 |
| Msa0003300 | Msa0036140 | 0.832616 | 8.541254e-56 | -8.615850e-47 |
| Msa0003300 | Msa0036920 | 0.811697 | 6.148755e-51 | -8.615850e-47 |
| Msa0003300 | Msa0048000 | 0.801580 | 8.419869e-49 | -8.615850e-47 |
| Msa0003300 | Msa0050930 | 0.901616 | 2.237036e-78 | -8.615850e-47 |
| Msa0003300 | Msa0056450 | 0.800275 | 1.555433e-48 | -8.615850e-47 |
| Msa0003300 | Msa0064110 | 0.805008 | 1.642121e-49 | -8.615850e-47 |
| Msa0003300 | Msa0077450 | 0.837903 | 3.949450e-57 | -8.615850e-47 |
| Msa0003300 | Msa0083090 | 0.807583 | 4.709602e-50 | -8.615850e-47 |
| Msa0003300 | Msa0084080 | 0.801564 | 8.485204e-49 | -8.615850e-47 |
| Msa0003300 | Msa0094600 | -0.829794 | 4.215983e-55 | -8.615850e-47 |
| Msa0003300 | Msa0095560 | 0.827710 | 1.346031e-54 | -8.615850e-47 |
| Msa0003300 | Msa0100160 | 0.801511 | 8.699731e-49 | -8.615850e-47 |
| Msa0003300 | Msa0108390 | 0.812884 | 3.386842e-51 | -8.615850e-47 |
| Msa0003300 | Msa0123300 | 0.815750 | 7.876731e-52 | -8.615850e-47 |
| Msa0003300 | Msa0125050 | 0.800242 | 1.579670e-48 | -8.615850e-47 |
| Msa0003300 | Msa0130970 | 0.807916 | 4.000009e-50 | -8.615850e-47 |
| Msa0003300 | Msa0131770 | 0.807753 | 4.333737e-50 | -8.615850e-47 |
| Msa0003300 | Msa0144790 | 0.850070 | 2.152776e-60 | -8.615850e-47 |
| Msa0003300 | Msa0145260 | 0.805139 | 1.541696e-49 | -8.615850e-47 |
| Msa0003300 | Msa0169820 | 0.830286 | 3.199609e-55 | -8.615850e-47 |
| Msa0003300 | Msa0169860 | 0.811267 | 7.624696e-51 | -8.615850e-47 |
| Msa0003300 | Msa0170140 | 0.834907 | 2.284937e-56 | -8.615850e-47 |
| Msa0003300 | Msa0175420 | 0.804085 | 2.558316e-49 | -8.615850e-47 |
| Msa0003300 | Msa0178510 | 0.810255 | 1.262212e-50 | -8.615850e-47 |
| Msa0003300 | Msa0187030 | 0.814235 | 1.708159e-51 | -8.615850e-47 |
| Msa0003300 | Msa0200560 | 0.829204 | 5.867613e-55 | -8.615850e-47 |
| Msa0003300 | Msa0202880 | 0.825291 | 5.078662e-54 | -8.615850e-47 |
| Msa0003300 | Msa0210450 | 0.818504 | 1.893636e-52 | -8.615850e-47 |
| Msa0003300 | Msa0213040 | 0.821400 | 4.120506e-53 | -8.615850e-47 |
| Msa0003300 | Msa0223410 | -0.813792 | 2.139510e-51 | -8.615850e-47 |
| Msa0003300 | Msa0234440 | 0.864096 | 1.554826e-64 | -8.615850e-47 |
| Msa0003300 | Msa0237310 | 0.848879 | 4.625606e-60 | -8.615850e-47 |
| Msa0003300 | Msa0243250 | 0.833025 | 6.758426e-56 | -8.615850e-47 |
| Msa0003300 | Msa0245940 | 0.804673 | 1.929295e-49 | -8.615850e-47 |
| Msa0003300 | Msa0253340 | 0.816101 | 6.576793e-52 | -8.615850e-47 |
| Msa0003300 | Msa0259500 | 0.816458 | 5.473999e-52 | -8.615850e-47 |
| Msa0003300 | Msa0264780 | 0.801021 | 1.095928e-48 | -8.615850e-47 |
| Msa0003300 | Msa0272730 | 0.881756 | 1.842370e-70 | -8.615850e-47 |
| Msa0003300 | Msa0274730 | 0.847709 | 9.740754e-60 | -8.615850e-47 |
| Msa0003300 | Msa0277420 | 0.842910 | 1.936915e-58 | -8.615850e-47 |
| Msa0003300 | Msa0279260 | 0.820223 | 7.685098e-53 | -8.615850e-47 |
| Msa0003300 | Msa0279290 | 0.803653 | 3.145598e-49 | -8.615850e-47 |
| Msa0003300 | Msa0281640 | 0.840783 | 7.061337e-58 | -8.615850e-47 |
| Msa0003300 | Msa0284520 | 0.808156 | 3.557334e-50 | -8.615850e-47 |
| Msa0003300 | Msa0292170 | 0.818689 | 1.719259e-52 | -8.615850e-47 |
| Msa0003300 | Msa0294950 | 0.805221 | 1.481996e-49 | -8.615850e-47 |
| Msa0003300 | Msa0305700 | 0.813195 | 2.894491e-51 | -8.615850e-47 |
| Msa0003300 | Msa0306210 | -0.806704 | 7.229876e-50 | -8.615850e-47 |
| Msa0003300 | Msa0308460 | 0.812643 | 3.823466e-51 | -8.615850e-47 |
| Msa0003300 | Msa0313270 | 0.841072 | 5.932050e-58 | -8.615850e-47 |
| Msa0003300 | Msa0315530 | 0.844256 | 8.463558e-59 | -8.615850e-47 |
| Msa0003300 | Msa0317270 | 0.835870 | 1.304403e-56 | -8.615850e-47 |
| Msa0003300 | Msa0317740 | 0.801450 | 8.951471e-49 | -8.615850e-47 |
| Msa0003300 | Msa0320800 | 0.822612 | 2.158407e-53 | -8.615850e-47 |
| Msa0003300 | Msa0333400 | 0.803955 | 2.722253e-49 | -8.615850e-47 |
| Msa0003300 | Msa0341540 | 0.809550 | 1.789879e-50 | -8.615850e-47 |
| Msa0003300 | Msa0344690 | -0.852923 | 3.356020e-61 | -8.615850e-47 |
| Msa0003300 | Msa0350320 | -0.828376 | 9.303524e-55 | -8.615850e-47 |
| Msa0003300 | Msa0350870 | 0.806694 | 7.265313e-50 | -8.615850e-47 |
| Msa0003300 | Msa0376590 | 0.818460 | 1.937709e-52 | -8.615850e-47 |
| Msa0003300 | Msa0381600 | -0.817084 | 3.961225e-52 | -8.615850e-47 |
| Msa0003300 | Msa0381610 | -0.803569 | 3.274978e-49 | -8.615850e-47 |
| Msa0003300 | Msa0389340 | 0.802947 | 4.405131e-49 | -8.615850e-47 |
| Msa0003300 | Msa0392040 | -0.825218 | 5.285501e-54 | -8.615850e-47 |
| Msa0003300 | Msa0394260 | 0.810024 | 1.415576e-50 | -8.615850e-47 |
| Msa0003300 | Msa0403660 | 0.802321 | 5.931120e-49 | -8.615850e-47 |
| Msa0003300 | Msa0426900 | 0.807797 | 4.241230e-50 | -8.615850e-47 |
| Msa0003300 | Msa0429090 | 0.809192 | 2.136289e-50 | -8.615850e-47 |
| Msa0003300 | Msa0433410 | -0.832152 | 1.112547e-55 | -8.615850e-47 |
| Msa0003300 | Msa0436370 | 0.851325 | 9.553007e-61 | -8.615850e-47 |
| Msa0003300 | Msa0439970 | 0.846490 | 2.102386e-59 | -8.615850e-47 |
| Msa0003300 | Msa0443290 | 0.803998 | 2.667022e-49 | -8.615850e-47 |
| Msa0003300 | Msa0444750 | -0.822972 | 1.779367e-53 | -8.615850e-47 |
| Msa0003300 | Msa0458440 | 0.800353 | 1.499794e-48 | -8.615850e-47 |
| Msa0003300 | Msa0469160 | 0.801024 | 1.094500e-48 | -8.615850e-47 |
| Msa0003300 | Msa0469940 | -0.856021 | 4.261690e-62 | -8.615850e-47 |
| Msa0003300 | Msa0475500 | 0.804401 | 2.198546e-49 | -8.615850e-47 |
| Msa0003300 | Msa0490870 | 0.801333 | 9.459870e-49 | -8.615850e-47 |
| Msa0003300 | Msa0498220 | 0.807420 | 5.098693e-50 | -8.615850e-47 |
| Msa0003300 | Msa0516370 | 0.805055 | 1.605953e-49 | -8.615850e-47 |
| Msa0003300 | Msa0526100 | -0.804454 | 2.143436e-49 | -8.615850e-47 |
| Msa0003300 | Msa0532810 | -0.826703 | 2.346024e-54 | -8.615850e-47 |
| Msa0003300 | Msa0559500 | 0.826456 | 2.686245e-54 | -8.615850e-47 |
| Msa0003300 | Msa0567020 | 0.822554 | 2.226408e-53 | -8.615850e-47 |
| Msa0003300 | Msa0572420 | 0.817138 | 3.851740e-52 | -8.615850e-47 |
| Msa0003300 | Msa0572480 | 0.859720 | 3.401391e-63 | -8.615850e-47 |
| Msa0003300 | Msa0574850 | 0.825490 | 4.557321e-54 | -8.615850e-47 |
| Msa0003300 | Msa0580000 | 0.813483 | 2.501620e-51 | -8.615850e-47 |
| Msa0003300 | Msa0598160 | 0.833492 | 5.169407e-56 | -8.615850e-47 |
| Msa0003300 | Msa0626280 | 0.804074 | 2.572243e-49 | -8.615850e-47 |
| Msa0003300 | Msa0637900 | 0.810241 | 1.270923e-50 | -8.615850e-47 |
| Msa0003300 | Msa0645970 | 0.806141 | 9.502503e-50 | -8.615850e-47 |
| Msa0003300 | Msa0648880 | 0.813714 | 2.225927e-51 | -8.615850e-47 |
| Msa0003300 | Msa0654930 | -0.821614 | 3.676159e-53 | -8.615850e-47 |
| Msa0003300 | Msa0658570 | 0.835462 | 1.654693e-56 | -8.615850e-47 |
| Msa0003300 | Msa0688070 | 0.831563 | 1.555264e-55 | -8.615850e-47 |
| Msa0003300 | Msa0691050 | 0.813783 | 2.149098e-51 | -8.615850e-47 |
| Msa0003300 | Msa0702350 | 0.801370 | 9.298350e-49 | -8.615850e-47 |
| Msa0003300 | Msa0702680 | 0.808894 | 2.474994e-50 | -8.615850e-47 |
| Msa0003300 | Msa0711830 | 0.804186 | 2.437605e-49 | -8.615850e-47 |
| Msa0003300 | Msa0712590 | 0.806988 | 6.296648e-50 | -8.615850e-47 |
| Msa0003300 | Msa0717020 | 0.816459 | 5.471125e-52 | -8.615850e-47 |
| Msa0003300 | Msa0750240 | 0.812413 | 4.292906e-51 | -8.615850e-47 |
| Msa0003300 | Msa0751260 | 0.803025 | 4.244442e-49 | -8.615850e-47 |
| Msa0003300 | Msa0760130 | 0.811653 | 6.286690e-51 | -8.615850e-47 |
| Msa0003300 | Msa0768440 | 0.802288 | 6.023159e-49 | -8.615850e-47 |
| Msa0003300 | Msa0795070 | 0.814906 | 1.213279e-51 | -8.615850e-47 |
| Msa0003300 | Msa0805420 | 0.806044 | 9.957271e-50 | -8.615850e-47 |
| Msa0003300 | Msa0807030 | 0.802837 | 4.641127e-49 | -8.615850e-47 |
| Msa0003300 | Msa0817110 | 0.811942 | 5.437744e-51 | -8.615850e-47 |
| Msa0003300 | Msa0818110 | 0.830802 | 2.392489e-55 | -8.615850e-47 |
| Msa0003300 | Msa0830510 | 0.818731 | 1.682420e-52 | -8.615850e-47 |
| Msa0003300 | Msa0831150 | 0.822437 | 2.370421e-53 | -8.615850e-47 |
| Msa0003300 | Msa0862110 | 0.806390 | 8.419851e-50 | -8.615850e-47 |
| Msa0003300 | Msa0865510 | -0.803733 | 3.028555e-49 | -8.615850e-47 |
| Msa0003300 | Msa0868160 | 0.803602 | 3.224158e-49 | -8.615850e-47 |
| Msa0003300 | Msa0879550 | -0.825231 | 5.245784e-54 | -8.615850e-47 |
| Msa0003300 | Msa0886330 | -0.800532 | 1.378866e-48 | -8.615850e-47 |
| Msa0003300 | Msa0900620 | 0.805199 | 1.498344e-49 | -8.615850e-47 |
| Msa0003300 | Msa0924310 | 0.800615 | 1.326098e-48 | -8.615850e-47 |
| Msa0003300 | Msa0926890 | 0.802925 | 4.451555e-49 | -8.615850e-47 |
| Msa0003300 | Msa0936210 | 0.801256 | 9.812840e-49 | -8.615850e-47 |
| Msa0003300 | Msa0936390 | 0.804898 | 1.732112e-49 | -8.615850e-47 |
| Msa0003300 | Msa0969450 | 0.803517 | 3.356205e-49 | -8.615850e-47 |
| Msa0003300 | Msa0969520 | 0.827040 | 1.948300e-54 | -8.615850e-47 |
| Msa0003300 | Msa0982240 | 0.806746 | 7.080855e-50 | -8.615850e-47 |
| Msa0003300 | Msa1004010 | 0.810361 | 1.197590e-50 | -8.615850e-47 |
| Msa0003300 | Msa1008750 | 0.810546 | 1.092277e-50 | -8.615850e-47 |
| Msa0003300 | Msa1018990 | -0.819933 | 8.952836e-53 | -8.615850e-47 |
| Msa0003300 | Msa1037620 | 0.811695 | 6.156518e-51 | -8.615850e-47 |
| Msa0003300 | Msa1040520 | 0.802434 | 5.622016e-49 | -8.615850e-47 |
| Msa0003300 | Msa1041600 | -0.846389 | 2.239729e-59 | -8.615850e-47 |
| Msa0003300 | Msa1068200 | -0.841164 | 5.611091e-58 | -8.615850e-47 |
| Msa0003300 | Msa1070840 | 0.802152 | 6.424974e-49 | -8.615850e-47 |
| Msa0003300 | Msa1075220 | -0.839968 | 1.153191e-57 | -8.615850e-47 |
| Msa0003300 | Msa1079430 | 0.804652 | 1.949249e-49 | -8.615850e-47 |
| Msa0003300 | Msa1080160 | 0.830719 | 2.506721e-55 | -8.615850e-47 |
| Msa0003300 | Msa1082500 | 0.800048 | 1.730347e-48 | -8.615850e-47 |
| Msa0003300 | Msa1084260 | 0.821093 | 4.848825e-53 | -8.615850e-47 |
| Msa0003300 | Msa1093480 | 0.818123 | 2.309827e-52 | -8.615850e-47 |
| Msa0003300 | Msa1096060 | 0.812631 | 3.847798e-51 | -8.615850e-47 |
| Msa0003300 | Msa1116130 | -0.813055 | 3.106354e-51 | -8.615850e-47 |
| Msa0003300 | Msa1118760 | 0.828564 | 8.381885e-55 | -8.615850e-47 |
| Msa0003300 | Msa1121490 | 0.814843 | 1.252907e-51 | -8.615850e-47 |
| Msa0003300 | Msa1127770 | 0.818747 | 1.667927e-52 | -8.615850e-47 |
| Msa0003300 | Msa1130300 | 0.801321 | 9.516206e-49 | -8.615850e-47 |
| Msa0003300 | Msa1132970 | 0.808342 | 3.246373e-50 | -8.615850e-47 |
| Msa0003300 | Msa1139000 | -0.843023 | 1.808327e-58 | -8.615850e-47 |
| Msa0003300 | Msa1144720 | -0.851137 | 1.079279e-60 | -8.615850e-47 |
| Msa0003300 | Msa1152950 | 0.815403 | 9.413445e-52 | -8.615850e-47 |
| Msa0003300 | Msa1156340 | -0.839159 | 1.872486e-57 | -8.615850e-47 |
| Msa0003300 | Msa1158310 | 0.804315 | 2.291607e-49 | -8.615850e-47 |
| Msa0003300 | Msa1158660 | 0.819380 | 1.197287e-52 | -8.615850e-47 |
| Msa0003300 | Msa1162550 | -0.837135 | 6.215578e-57 | -8.615850e-47 |
| Msa0003300 | Msa1163590 | -0.811136 | 8.142739e-51 | -8.615850e-47 |
| Msa0003300 | Msa1166500 | -0.850363 | 1.782772e-60 | -8.615850e-47 |
| Msa0003300 | Msa1177780 | 0.808206 | 3.470501e-50 | -8.615850e-47 |
| Msa0003300 | Msa1202750 | 0.810527 | 1.102590e-50 | -8.615850e-47 |
| Msa0003300 | Msa1205370 | 0.804379 | 2.222322e-49 | -8.615850e-47 |
| Msa0003300 | Msa1220150 | 0.822717 | 2.039637e-53 | -8.615850e-47 |
| Msa0003300 | Msa1224480 | 0.832903 | 7.248044e-56 | -8.615850e-47 |
| Msa0003300 | Msa1227330 | 0.842216 | 2.960006e-58 | -8.615850e-47 |
| Msa0003300 | Msa1243100 | 0.802307 | 5.970206e-49 | -8.615850e-47 |
| Msa0003300 | Msa1257800 | -0.800248 | 1.575760e-48 | -8.615850e-47 |
| Msa0003300 | Msa1264330 | -0.852205 | 5.377172e-61 | -8.615850e-47 |
| Msa0003300 | Msa1267610 | 0.874454 | 6.671984e-68 | -8.615850e-47 |
| Msa0003300 | Msa1303090 | -0.811898 | 5.561615e-51 | -8.615850e-47 |
| Msa0003300 | Msa1319820 | 0.809207 | 2.120789e-50 | -8.615850e-47 |
| Msa0003300 | Msa1333730 | 0.812321 | 4.496991e-51 | -8.615850e-47 |
| Msa0003300 | Msa1366300 | 0.818177 | 2.245583e-52 | -8.615850e-47 |
| Msa0003300 | Msa1370470 | -0.814619 | 1.404711e-51 | -8.615850e-47 |
| Msa0003300 | Msa1372150 | 0.801166 | 1.023593e-48 | -8.615850e-47 |
| Msa0003300 | Msa1376160 | -0.810088 | 1.371638e-50 | -8.615850e-47 |
| Msa0003300 | Msa1376890 | 0.834466 | 2.949439e-56 | -8.615850e-47 |
| Msa0003300 | Msa1378940 | 0.802599 | 5.196802e-49 | -8.615850e-47 |
| Msa0003300 | Msa1379590 | 0.878834 | 2.037457e-69 | -8.615850e-47 |
| Msa0003300 | Msa1379850 | 0.850669 | 1.462587e-60 | -8.615850e-47 |
| Msa0003300 | Msa1383980 | -0.809570 | 1.772532e-50 | -8.615850e-47 |
| Msa0003300 | Msa1384350 | 0.810276 | 1.249272e-50 | -8.615850e-47 |
| Msa0003300 | Msa1393040 | 0.811464 | 6.909320e-51 | -8.615850e-47 |
| Msa0003300 | Msa1402270 | 0.812973 | 3.237006e-51 | -8.615850e-47 |
| Msa0003300 | Msa1407650 | 0.812753 | 3.618088e-51 | -8.615850e-47 |
| Msa0003300 | Msa1408620 | -0.812709 | 3.699367e-51 | -8.615850e-47 |
| Msa0003300 | Msa1424640 | 0.875915 | 2.114961e-68 | -8.615850e-47 |
| Msa0003300 | Msa1433220 | 0.821122 | 4.775659e-53 | -8.615850e-47 |
| Msa0003300 | Msa1435400 | 0.804997 | 1.651108e-49 | -8.615850e-47 |
| Msa0003300 | Msa1440940 | 0.818114 | 2.320456e-52 | -8.615850e-47 |
| Msa0003300 | Msa1445030 | 0.815792 | 7.710462e-52 | -8.615850e-47 |
| Msa0003300 | Msa1447150 | 0.804472 | 2.125370e-49 | -8.615850e-47 |
| Msa0003300 | Msa1451620 | -0.811092 | 8.323882e-51 | -8.615850e-47 |
| Msa0003300 | Msa1457100 | 0.803485 | 3.407988e-49 | -8.615850e-47 |
| Msa0003300 | Msa1459050 | 0.965233 | 2.437599e-124 | -8.615850e-47 |
| Msa0003300 | Msa1461810 | -0.846336 | 2.315348e-59 | -8.615850e-47 |
| Msa0003300 | Msa1466810 | 0.800387 | 1.476246e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003300 | MtrunA17_Chr1g0155681 | 96.491 | 627 | 9 | 1 | 49 | 662 | 1 | 627 | 0.0 | 1254 |
| Msa0003300 | MtrunA17_Chr3g0141941 | 64.693 | 456 | 115 | 11 | 49 | 480 | 1 | 434 | 0.0 | 542 |
| Msa0003300 | MtrunA17_Chr3g0141941 | 61.000 | 100 | 28 | 5 | 574 | 662 | 418 | 517 | 3.13e-22 | 100 |
| Msa0003300 | MtrunA17_Chr1g0177751 | 54.941 | 253 | 86 | 5 | 220 | 452 | 163 | 407 | 5.17e-79 | 264 |
| Msa0003300 | MtrunA17_Chr7g0267481 | 55.390 | 269 | 94 | 5 | 220 | 468 | 173 | 435 | 9.52e-77 | 258 |
| Msa0003300 | MtrunA17_Chr8g0373801 | 50.365 | 274 | 101 | 5 | 221 | 469 | 391 | 654 | 4.72e-76 | 260 |
| Msa0003300 | MtrunA17_Chr5g0403251 | 48.227 | 282 | 109 | 5 | 213 | 469 | 333 | 602 | 5.77e-75 | 255 |
| Msa0003300 | MtrunA17_Chr4g0025521 | 54.478 | 268 | 94 | 5 | 219 | 466 | 218 | 477 | 8.64e-75 | 254 |
| Msa0003300 | MtrunA17_Chr3g0141931 | 49.296 | 284 | 86 | 9 | 221 | 470 | 168 | 427 | 6.52e-68 | 229 |
| Msa0003300 | MtrunA17_Chr8g0387321 | 49.035 | 259 | 93 | 6 | 221 | 454 | 188 | 432 | 6.08e-67 | 231 |
| Msa0003300 | MtrunA17_Chr4g0028701 | 35.309 | 405 | 181 | 11 | 221 | 568 | 248 | 628 | 1.04e-54 | 198 |
| Msa0003300 | MtrunA17_Chr7g0240371 | 39.286 | 308 | 130 | 9 | 222 | 497 | 141 | 423 | 1.45e-52 | 189 |
| Msa0003300 | MtrunA17_Chr4g0008591 | 39.695 | 262 | 107 | 5 | 221 | 461 | 199 | 430 | 1.17e-49 | 182 |
| Msa0003300 | MtrunA17_Chr2g0327021 | 46.114 | 193 | 85 | 2 | 297 | 470 | 326 | 518 | 4.01e-47 | 176 |
| Msa0003300 | MtrunA17_Chr1g0151681 | 36.923 | 260 | 134 | 5 | 220 | 460 | 245 | 493 | 1.25e-39 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003300 | AT2G16400.1 | 59.929 | 282 | 65 | 7 | 221 | 478 | 117 | 374 | 5.17e-100 | 315 |
| Msa0003300 | AT1G19700.1 | 48.556 | 381 | 119 | 10 | 127 | 464 | 78 | 424 | 2.86e-97 | 309 |
| Msa0003300 | AT1G19700.3 | 48.556 | 381 | 119 | 10 | 127 | 464 | 78 | 424 | 2.86e-97 | 309 |
| Msa0003300 | AT1G19700.5 | 48.556 | 381 | 119 | 10 | 127 | 464 | 78 | 424 | 2.86e-97 | 309 |
| Msa0003300 | AT1G19700.4 | 48.556 | 381 | 119 | 10 | 127 | 464 | 78 | 424 | 2.86e-97 | 309 |
| Msa0003300 | AT1G19700.2 | 48.556 | 381 | 119 | 10 | 127 | 464 | 78 | 424 | 2.86e-97 | 309 |
| Msa0003300 | AT1G75410.1 | 58.824 | 272 | 68 | 6 | 219 | 465 | 168 | 420 | 7.13e-96 | 305 |
| Msa0003300 | AT1G75410.2 | 58.824 | 272 | 68 | 6 | 219 | 465 | 168 | 420 | 7.13e-96 | 305 |
| Msa0003300 | AT4G34610.2 | 53.538 | 325 | 100 | 7 | 221 | 517 | 143 | 444 | 4.02e-95 | 303 |
| Msa0003300 | AT4G34610.4 | 53.538 | 325 | 100 | 7 | 221 | 517 | 143 | 444 | 4.02e-95 | 303 |
| Msa0003300 | AT4G34610.3 | 53.538 | 325 | 100 | 7 | 221 | 517 | 143 | 444 | 4.02e-95 | 303 |
| Msa0003300 | AT4G34610.1 | 53.538 | 325 | 100 | 7 | 221 | 517 | 143 | 444 | 4.02e-95 | 303 |
| Msa0003300 | AT1G75410.3 | 54.656 | 247 | 68 | 6 | 217 | 438 | 166 | 393 | 1.90e-74 | 245 |
| Msa0003300 | AT2G23760.2 | 49.057 | 265 | 97 | 5 | 221 | 459 | 240 | 492 | 2.63e-70 | 240 |
| Msa0003300 | AT2G23760.1 | 49.057 | 265 | 97 | 5 | 221 | 459 | 240 | 492 | 2.63e-70 | 240 |
| Msa0003300 | AT2G23760.3 | 49.057 | 265 | 97 | 5 | 221 | 459 | 240 | 492 | 2.63e-70 | 240 |
| Msa0003300 | AT2G35940.3 | 51.724 | 261 | 97 | 5 | 218 | 452 | 189 | 446 | 3.08e-70 | 241 |
| Msa0003300 | AT2G35940.1 | 51.724 | 261 | 97 | 5 | 218 | 452 | 189 | 446 | 3.08e-70 | 241 |
| Msa0003300 | AT2G35940.2 | 51.724 | 261 | 97 | 5 | 218 | 452 | 189 | 446 | 3.08e-70 | 241 |
| Msa0003300 | AT4G36870.2 | 49.813 | 267 | 93 | 6 | 221 | 460 | 315 | 567 | 3.55e-70 | 243 |
| Msa0003300 | AT4G36870.1 | 49.813 | 267 | 93 | 6 | 221 | 460 | 315 | 567 | 3.55e-70 | 243 |
| Msa0003300 | AT5G41410.1 | 46.545 | 275 | 104 | 6 | 221 | 461 | 196 | 461 | 8.65e-61 | 214 |
| Msa0003300 | AT2G23760.4 | 41.009 | 317 | 97 | 6 | 221 | 459 | 240 | 544 | 9.78e-61 | 215 |
| Msa0003300 | AT2G27220.1 | 42.857 | 266 | 97 | 7 | 219 | 467 | 77 | 304 | 2.17e-57 | 200 |
| Msa0003300 | AT2G27220.3 | 42.857 | 266 | 97 | 7 | 219 | 467 | 77 | 304 | 2.17e-57 | 200 |
| Msa0003300 | AT2G27220.2 | 43.678 | 261 | 120 | 7 | 219 | 467 | 77 | 322 | 6.66e-57 | 199 |
| Msa0003300 | AT1G75430.1 | 40.293 | 273 | 122 | 8 | 220 | 465 | 18 | 276 | 8.50e-55 | 189 |
| Msa0003300 | AT4G36870.4 | 46.341 | 246 | 91 | 6 | 221 | 439 | 315 | 546 | 2.55e-54 | 195 |
| Msa0003300 | AT4G36870.3 | 46.311 | 244 | 90 | 6 | 221 | 437 | 315 | 544 | 2.26e-53 | 192 |
| Msa0003300 | AT5G02030.1 | 40.520 | 269 | 107 | 7 | 222 | 461 | 174 | 418 | 9.70e-48 | 177 |
| Msa0003300 | AT2G27990.1 | 43.460 | 237 | 105 | 6 | 264 | 480 | 289 | 516 | 2.67e-46 | 173 |
| Msa0003300 | AT4G32980.1 | 39.526 | 253 | 123 | 8 | 222 | 460 | 205 | 441 | 8.42e-39 | 150 |
| Msa0003300 | AT4G32980.2 | 39.526 | 253 | 123 | 8 | 222 | 460 | 205 | 441 | 8.42e-39 | 150 |
| Msa0003300 | AT1G75430.2 | 32.444 | 225 | 111 | 8 | 220 | 417 | 18 | 228 | 3.84e-23 | 100 |
| Msa0003300 | AT2G27990.2 | 37.427 | 171 | 81 | 5 | 264 | 417 | 289 | 450 | 4.03e-20 | 94.4 |
Find 177 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAATATCAGTTTGAAATT+TGG | 0.123735 | 1_1:+5818461 | Msa0003300:three_prime_UTR |
| TCATAATTGTACCTGGTTTC+TGG | 0.152099 | 1_1:-5817390 | None:intergenic |
| TCCTTTGAGTCAATTGAATT+TGG | 0.219438 | 1_1:-5817039 | None:intergenic |
| TTCGAGTGTGGGATGATAAA+AGG | 0.235165 | 1_1:+5817795 | Msa0003300:CDS |
| TTATGCAGCCATCACCATTT+TGG | 0.238602 | 1_1:-5818048 | None:intergenic |
| TCCAAACACATCAAAATCTT+TGG | 0.243530 | 1_1:+5818655 | Msa0003300:three_prime_UTR |
| TGCATGGCATCTTTGTCTTC+TGG | 0.248717 | 1_1:+5815879 | Msa0003300:CDS |
| CAAGTTGATTCCATTGTTTA+AGG | 0.268533 | 1_1:+5815437 | Msa0003300:CDS |
| TGCGGAACGACAGCATTTAT+TGG | 0.269167 | 1_1:+5816241 | Msa0003300:CDS |
| GAGATAGGTGGATTTGAATA+AGG | 0.271180 | 1_1:-5818019 | None:intergenic |
| CATCATCAATATCATGAATA+AGG | 0.288318 | 1_1:+5818946 | Msa0003300:three_prime_UTR |
| TCTTACGCGGAGATGATATC+TGG | 0.303124 | 1_1:+5815537 | Msa0003300:CDS |
| TTAATGCGAGGGTGCGTCTT+TGG | 0.310569 | 1_1:+5817669 | Msa0003300:CDS |
| CCAATGATGACATCAATAAA+AGG | 0.314376 | 1_1:+5818188 | Msa0003300:CDS |
| GATCAGATTGCCCTTCATTA+AGG | 0.326393 | 1_1:-5815959 | None:intergenic |
| CGGTTTGTTTCAAGCCCTTT+CGG | 0.335842 | 1_1:-5816076 | None:intergenic |
| AGTATTGACACAGAGCTTTC+AGG | 0.345023 | 1_1:-5817181 | None:intergenic |
| CCTATCTCAATCAACCAAAA+TGG | 0.345586 | 1_1:+5818034 | Msa0003300:CDS |
| AATGTGATGGATTCTAGAAT+TGG | 0.353123 | 1_1:+5817953 | Msa0003300:CDS |
| AACTCTGAAAGTGATGGATT+TGG | 0.353605 | 1_1:+5818160 | Msa0003300:CDS |
| GAATAACTGCTGATCCTTGC+AGG | 0.353930 | 1_1:-5815986 | None:intergenic |
| GAATATGCTGTCTATTGATC+AGG | 0.361084 | 1_1:+5815644 | Msa0003300:CDS |
| TGTTCATGTTAAACCTTTGT+TGG | 0.369527 | 1_1:-5817991 | None:intergenic |
| CAATGCGTTCACATTGTACT+AGG | 0.370121 | 1_1:-5818993 | None:intergenic |
| ATCAGAATTCATCATATTCA+TGG | 0.380736 | 1_1:+5818556 | Msa0003300:three_prime_UTR |
| TCATCGTCTCTCAGAGCTTT+CGG | 0.386352 | 1_1:-5817770 | None:intergenic |
| GTTGAAGTTTATGACATCTA+TGG | 0.390672 | 1_1:+5815611 | Msa0003300:CDS |
| CTTTCTGCTCCCTTAAACAA+TGG | 0.392318 | 1_1:-5815447 | None:intergenic |
| GATAAATCATCATAAGTTGT+AGG | 0.393638 | 1_1:-5818082 | None:intergenic |
| TTGTTTGCATTAGAACCATT+AGG | 0.396087 | 1_1:-5816197 | None:intergenic |
| CAAGTATCTTCAGGCCCTAA+TGG | 0.396669 | 1_1:+5816182 | Msa0003300:CDS |
| CAAAGAAGAGTTTGGTGATT+CGG | 0.398248 | 1_1:+5817715 | Msa0003300:CDS |
| TTGTAATATTGTGGGGTGAT+TGG | 0.401084 | 1_1:+5818872 | Msa0003300:three_prime_UTR |
| AGGGCCTGTCTCTTAGCCTT+GGG | 0.402513 | 1_1:+5815742 | Msa0003300:CDS |
| TATAATCCACATCCTTCAAT+AGG | 0.405384 | 1_1:+5815936 | Msa0003300:CDS |
| TCAAAGGAGCCTTGGAGAAC+AGG | 0.407571 | 1_1:+5817054 | Msa0003300:CDS |
| TGTTTGCATTAGAACCATTA+GGG | 0.408633 | 1_1:-5816196 | None:intergenic |
| GGATACATTGTAAGCAAGAT+TGG | 0.408759 | 1_1:-5815492 | None:intergenic |
| CAGGGCCTGTCTCTTAGCCT+TGG | 0.411685 | 1_1:+5815741 | Msa0003300:CDS |
| ATTCATATCAGGTGGCGAAT+TGG | 0.412122 | 1_1:+5817642 | Msa0003300:intron |
| GAACAACAAGGTCAAATTGC+AGG | 0.412751 | 1_1:+5817857 | Msa0003300:CDS |
| CCCGAAGAAAACGCTTGGTT+CGG | 0.414480 | 1_1:-5815513 | None:intergenic |
| GGAAAGCAACAACACAAGTT+TGG | 0.415587 | 1_1:+5818274 | Msa0003300:CDS |
| CCTTAACTCTCATTACCTTA+AGG | 0.423186 | 1_1:+5816019 | Msa0003300:CDS |
| GAAGGGGTCTGCATCTCTTA+AGG | 0.423750 | 1_1:+5815842 | Msa0003300:CDS |
| TGAATTGAAAGAACCGTGTT+TGG | 0.424045 | 1_1:+5818328 | Msa0003300:exon |
| ATCCTCCTCAACCACAGAAT+TGG | 0.427692 | 1_1:+5817898 | Msa0003300:CDS |
| ATCATGTTGGCAAGACAAAC+AGG | 0.427985 | 1_1:+5817362 | Msa0003300:CDS |
| AAGTTGATTCCATTGTTTAA+GGG | 0.429773 | 1_1:+5815438 | Msa0003300:CDS |
| GGAAACACGGTGGCTATATC+AGG | 0.433514 | 1_1:-5818635 | None:intergenic |
| TTATCAGAGTTGAATAACTT+TGG | 0.446808 | 1_1:+5818100 | Msa0003300:CDS |
| ACAGCGAAAGTGACGGGAAA+TGG | 0.449081 | 1_1:-5816996 | None:intergenic |
| TGCGCAAATCTCAAACTTGA+AGG | 0.449976 | 1_1:+5815824 | Msa0003300:CDS |
| TAGTCTAACAAATCAGTATC+TGG | 0.450445 | 1_1:-5818235 | None:intergenic |
| ACGAGTCCGAACTGTGTCCT+TGG | 0.450686 | 1_1:-5815693 | None:intergenic |
| CTTAAGGTAATGAGAGTTAA+GGG | 0.452147 | 1_1:-5816018 | None:intergenic |
| CCTTAAGGTAATGAGAGTTA+AGG | 0.455316 | 1_1:-5816019 | None:intergenic |
| TAGCGAGGTGAAACTGTTGC+CGG | 0.455506 | 1_1:-5815796 | None:intergenic |
| AAATGGTGATGGCTGCATAA+TGG | 0.456126 | 1_1:+5818051 | Msa0003300:CDS |
| GAAGTTCCTGTGCTGCCTTA+AGG | 0.456385 | 1_1:-5816034 | None:intergenic |
| TCTATCCAATTCTGTGGTTG+AGG | 0.458494 | 1_1:-5817903 | None:intergenic |
| CGAGCAAAACGTACAATGCC+AGG | 0.460386 | 1_1:+5815722 | Msa0003300:CDS |
| TTGTACATTTCTTCGACCAT+TGG | 0.464693 | 1_1:-5817695 | None:intergenic |
| TTTGACATGGTTGCTGGTTG+CGG | 0.469668 | 1_1:+5816938 | Msa0003300:CDS |
| GACTATCACTTCACAGACTC+TGG | 0.470328 | 1_1:+5818253 | Msa0003300:CDS |
| GATTTCAAAACAATGTCAAA+AGG | 0.470576 | 1_1:+5815904 | Msa0003300:CDS |
| TTAAGGCCTATTGAAGGATG+TGG | 0.474446 | 1_1:-5815942 | None:intergenic |
| CCTTCATTAAGGCCTATTGA+AGG | 0.476704 | 1_1:-5815948 | None:intergenic |
| ATGTGATGGATTCTAGAATT+GGG | 0.476805 | 1_1:+5817954 | Msa0003300:CDS |
| CGAAAGGGCTTGAAACAAAC+CGG | 0.477844 | 1_1:+5816077 | Msa0003300:CDS |
| TCGAGTGTGGGATGATAAAA+GGG | 0.478699 | 1_1:+5817796 | Msa0003300:CDS |
| GAAATGTACAAAGAAGAGTT+TGG | 0.481440 | 1_1:+5817707 | Msa0003300:CDS |
| GGATTCAAAGTAGTGATCAT+TGG | 0.484660 | 1_1:+5817927 | Msa0003300:CDS |
| CAATCTATGCAAGTATCTTC+AGG | 0.487753 | 1_1:+5816173 | Msa0003300:CDS |
| TTGAATAACTTTGGTGTTGG+TGG | 0.488559 | 1_1:+5818109 | Msa0003300:CDS |
| CCTTCAATAGGCCTTAATGA+AGG | 0.490236 | 1_1:+5815948 | Msa0003300:CDS |
| CAATTGACTCAAAGGAGCCT+TGG | 0.496196 | 1_1:+5817046 | Msa0003300:CDS |
| GACAAGTTAATGAATGTTGA+TGG | 0.500544 | 1_1:+5817830 | Msa0003300:CDS |
| ACGCAAACAGCGAAAGTGAC+GGG | 0.500857 | 1_1:-5817002 | None:intergenic |
| ACAGATTCACTGTAATTATG+AGG | 0.502023 | 1_1:-5815573 | None:intergenic |
| TCCTTTCAATATCAGTATCC+CGG | 0.503550 | 1_1:+5815777 | Msa0003300:CDS |
| TCAACCACAGAATTGGATAG+AGG | 0.504097 | 1_1:+5817905 | Msa0003300:CDS |
| AGCAAGAGCAGTGTATGGTT+CGG | 0.505239 | 1_1:-5816966 | None:intergenic |
| TGAGAGTTAAGGGCATTGTT+CGG | 0.506066 | 1_1:-5816008 | None:intergenic |
| ACAACATTGACCGTTGGATC+AGG | 0.506924 | 1_1:-5818494 | None:intergenic |
| GCCAAATTCAATTGACTCAA+AGG | 0.508585 | 1_1:+5817038 | Msa0003300:CDS |
| GATGCTTCCAAAGATTCTGA+TGG | 0.513635 | 1_1:+5816137 | Msa0003300:CDS |
| CGCAAAGCAAGAGCAGTGTA+TGG | 0.513848 | 1_1:-5816971 | None:intergenic |
| GAAATAGTTAATGTCCGAAA+GGG | 0.516547 | 1_1:+5816062 | Msa0003300:CDS |
| CAAGGCTAAGAGACAGGCCC+TGG | 0.521258 | 1_1:-5815740 | None:intergenic |
| ACAAACTCGTGCAACAAATG+TGG | 0.529085 | 1_1:-5818301 | None:intergenic |
| TTGTCCCAAGGCTAAGAGAC+AGG | 0.530080 | 1_1:-5815746 | None:intergenic |
| TGGATCGCTCGTACTAGCAT+TGG | 0.530376 | 1_1:-5815673 | None:intergenic |
| AATAAATGCTGTCGTTCCGC+AGG | 0.530460 | 1_1:-5816239 | None:intergenic |
| GGGCTTGAAACAAACCGGAT+TGG | 0.530868 | 1_1:+5816082 | Msa0003300:CDS |
| AATCCCTCTATCCAATTCTG+TGG | 0.532847 | 1_1:-5817909 | None:intergenic |
| AACAGGCTTGACCAGAAACC+AGG | 0.533633 | 1_1:+5817379 | Msa0003300:CDS |
| CGCAAATCTCAAACTTGAAG+GGG | 0.537507 | 1_1:+5815826 | Msa0003300:CDS |
| TGTTTGCGTGATGCTATTAG+CGG | 0.542554 | 1_1:+5817016 | Msa0003300:CDS |
| ATAGGGGAACCTACGGATGA+AGG | 0.542920 | 1_1:-5817228 | None:intergenic |
| TTTCACTTGCATTAGAGTTG+AGG | 0.543423 | 1_1:+5818137 | Msa0003300:CDS |
| ATGGCATCTTTGTCTTCTGG+AGG | 0.543573 | 1_1:+5815882 | Msa0003300:CDS |
| ATTTCAAAACAATGTCAAAA+GGG | 0.546039 | 1_1:+5815905 | Msa0003300:CDS |
| AGCGATCCAAGGACACAGTT+CGG | 0.549071 | 1_1:+5815687 | Msa0003300:CDS |
| GTTACCACATCAACGGTTGT+TGG | 0.551612 | 1_1:+5818397 | Msa0003300:three_prime_UTR |
| ACACAAAGCAACAGCAGCAT+AGG | 0.560816 | 1_1:-5818753 | None:intergenic |
| AATATGCTGTCTATTGATCA+GGG | 0.561372 | 1_1:+5815645 | Msa0003300:CDS |
| TCATTACCTTAAGGCAGCAC+AGG | 0.563750 | 1_1:+5816028 | Msa0003300:CDS |
| AGCGAGGTGAAACTGTTGCC+GGG | 0.566022 | 1_1:-5815795 | None:intergenic |
| TTGAGGAACTCTGAAAGTGA+TGG | 0.567032 | 1_1:+5818154 | Msa0003300:CDS |
| GCGCAAATCTCAAACTTGAA+GGG | 0.567269 | 1_1:+5815825 | Msa0003300:CDS |
| CTTCAATAGGCCTTAATGAA+GGG | 0.568757 | 1_1:+5815949 | Msa0003300:CDS |
| ATCCAATTCTGTGGTTGAGG+AGG | 0.571241 | 1_1:-5817900 | None:intergenic |
| CTGTGTCAATACTCCGTGCA+TGG | 0.572034 | 1_1:+5817191 | Msa0003300:CDS |
| ATTTGGTATTAGTTATCCGA+AGG | 0.572160 | 1_1:+5817328 | Msa0003300:intron |
| TCAATCAACCAAAATGGTGA+TGG | 0.572460 | 1_1:+5818040 | Msa0003300:CDS |
| CAAAACAATGTCAAAAGGGA+GGG | 0.573643 | 1_1:+5815909 | Msa0003300:CDS |
| ACTGCTGATCCTTGCAGGCA+CGG | 0.574395 | 1_1:-5815981 | None:intergenic |
| CAAACTCGTGCAACAAATGT+GGG | 0.576826 | 1_1:-5818300 | None:intergenic |
| AAGATCCCGAAGAAAACGCT+TGG | 0.576848 | 1_1:-5815518 | None:intergenic |
| CGAATTGGTTTATTAATGCG+AGG | 0.577323 | 1_1:+5817657 | Msa0003300:CDS |
| TGAAATAGTTAATGTCCGAA+AGG | 0.577336 | 1_1:+5816061 | Msa0003300:CDS |
| CTTACGCGGAGATGATATCT+GGG | 0.578743 | 1_1:+5815538 | Msa0003300:CDS |
| AAATGCAAGGTGACCAACAA+AGG | 0.584563 | 1_1:+5817978 | Msa0003300:CDS |
| GGATACTGATATTGAAAGGA+AGG | 0.586079 | 1_1:-5815774 | None:intergenic |
| TCTAGAATTGGGAAAATGCA+AGG | 0.587723 | 1_1:+5817965 | Msa0003300:CDS |
| CGATCCAACAACCGTTGATG+TGG | 0.588635 | 1_1:-5818401 | None:intergenic |
| GTATTCCCTCCTGTTCTCCA+AGG | 0.589107 | 1_1:-5817063 | None:intergenic |
| GCTATATCAGGACGCACGAT+CGG | 0.589739 | 1_1:-5818623 | None:intergenic |
| CAACCACAGAATTGGATAGA+GGG | 0.589884 | 1_1:+5817906 | Msa0003300:CDS |
| TGCATCTCTTAAGGATGATG+AGG | 0.590655 | 1_1:+5815851 | Msa0003300:CDS |
| ATGCTAGTACGAGCGATCCA+AGG | 0.594612 | 1_1:+5815676 | Msa0003300:CDS |
| CATAATTACAGTGAATCTGT+AGG | 0.596692 | 1_1:+5815576 | Msa0003300:CDS |
| AAAGAACCGTGTTTGGAGAG+CGG | 0.596908 | 1_1:+5818335 | Msa0003300:three_prime_UTR |
| CAATCTGATCCGTGCCTGCA+AGG | 0.597181 | 1_1:+5815972 | Msa0003300:CDS |
| GTCATCACAACATTGACCGT+TGG | 0.599072 | 1_1:-5818500 | None:intergenic |
| ACTCTAATGCAAGTGAAACA+TGG | 0.600932 | 1_1:-5818132 | None:intergenic |
| GCCGGGATACTGATATTGAA+AGG | 0.601547 | 1_1:-5815778 | None:intergenic |
| AAGGAGCCTTGGAGAACAGG+AGG | 0.601817 | 1_1:+5817057 | Msa0003300:CDS |
| ATCATCCGATCCTGATCCAA+CGG | 0.601994 | 1_1:+5818484 | Msa0003300:three_prime_UTR |
| AACAACAAGGTCAAATTGCA+GGG | 0.603207 | 1_1:+5817858 | Msa0003300:CDS |
| CACGCAAACAGCGAAAGTGA+CGG | 0.607447 | 1_1:-5817003 | None:intergenic |
| TCAAAACAATGTCAAAAGGG+AGG | 0.609941 | 1_1:+5815908 | Msa0003300:CDS |
| ATTGACCGTTGGATCAGGAT+CGG | 0.612279 | 1_1:-5818489 | None:intergenic |
| TGATCATTGGACAAATGTGA+TGG | 0.613913 | 1_1:+5817940 | Msa0003300:CDS |
| GAGTTGAATAACTTTGGTGT+TGG | 0.616287 | 1_1:+5818106 | Msa0003300:CDS |
| GAATTGGTTTATTAATGCGA+GGG | 0.617226 | 1_1:+5817658 | Msa0003300:CDS |
| GGATGATGAGGCTGAGTGCA+TGG | 0.618918 | 1_1:+5815863 | Msa0003300:CDS |
| GGTGCGTCTTTGGAAACCAA+TGG | 0.625023 | 1_1:+5817679 | Msa0003300:CDS |
| GGATTCAGAGAAAATCATGT+TGG | 0.625560 | 1_1:+5817349 | Msa0003300:CDS |
| AATTACAGTGAATCTGTAGG+AGG | 0.626592 | 1_1:+5815579 | Msa0003300:CDS |
| TAAAAGGCGTAATCAAACAA+TGG | 0.626825 | 1_1:+5818204 | Msa0003300:CDS |
| ATATGTCCGCTCTCCAAACA+CGG | 0.629785 | 1_1:-5818341 | None:intergenic |
| TAACGCAGTTACCACATCAA+CGG | 0.633228 | 1_1:+5818390 | Msa0003300:three_prime_UTR |
| GATTTGCGCATTCATTAGCG+AGG | 0.633287 | 1_1:-5815811 | None:intergenic |
| AGACGATGATGTTCGAGTGT+GGG | 0.634657 | 1_1:+5817784 | Msa0003300:CDS |
| AAGGTTTACCTCATCCAACA+TGG | 0.638250 | 1_1:-5816285 | None:intergenic |
| TTCATGTGAGCTATCGCCTG+CGG | 0.643410 | 1_1:+5816223 | Msa0003300:CDS |
| GAGACGATGATGTTCGAGTG+TGG | 0.650382 | 1_1:+5817783 | Msa0003300:CDS |
| AGGAAGGCATCATTGTCCCA+AGG | 0.659671 | 1_1:-5815758 | None:intergenic |
| TGATCGACATAGCGGAGACG+AGG | 0.663796 | 1_1:-5817085 | None:intergenic |
| AGGAGCCTTGGAGAACAGGA+GGG | 0.665826 | 1_1:+5817058 | Msa0003300:CDS |
| AATGCTCGAAGAGCCATGCA+CGG | 0.666429 | 1_1:-5817204 | None:intergenic |
| GAGCAAAACGTACAATGCCA+GGG | 0.666769 | 1_1:+5815723 | Msa0003300:CDS |
| TTGGTGTAATGAGACAAGCT+TGG | 0.669718 | 1_1:+5817140 | Msa0003300:CDS |
| CAAGCTTGGAGACCTCAGAG+AGG | 0.678920 | 1_1:+5817154 | Msa0003300:CDS |
| AGATTAGGTTTAAAGCAACA+AGG | 0.682566 | 1_1:+5815381 | Msa0003300:intron |
| TATAGCTTTATGATTCACTG+TGG | 0.698749 | 1_1:-5818797 | None:intergenic |
| ATATGCTGTCTATTGATCAG+GGG | 0.700074 | 1_1:+5815646 | Msa0003300:CDS |
| GTTGATGGTGCTGAACAACA+AGG | 0.707575 | 1_1:+5817845 | Msa0003300:CDS |
| TAAGCTGCTGATCGACATAG+CGG | 0.719259 | 1_1:-5817093 | None:intergenic |
| CTTTCAGGAAGTCCTCTCTG+AGG | 0.726595 | 1_1:-5817166 | None:intergenic |
| GGTAACTGCGTTAATGCATG+AGG | 0.729879 | 1_1:-5818380 | None:intergenic |
| ATGCATGAGATTGTTGACTG+TGG | 0.741443 | 1_1:+5818530 | Msa0003300:three_prime_UTR |
| ACCGTGCAAAATATACACGT+AGG | 0.777231 | 1_1:+5818832 | Msa0003300:three_prime_UTR |
| TGATGTGTTTGGAAACACGG+TGG | 0.799998 | 1_1:-5818645 | None:intergenic |
| GTAGCTTTGAGATAGATGTG+CGG | 0.807225 | 1_1:-5818584 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGCTTATAAAAAAAAAT+GGG | + | chr1_1:5815012-5815031 | Msa0003300:intron | 10.0% |
| !!! | TTTATTAATTTTCCTAATTA+AGG | + | chr1_1:5815318-5815337 | Msa0003300:intron | 10.0% |
| !!! | AATTTGTTTTAAATTTCATT+TGG | + | chr1_1:5817311-5817330 | Msa0003300:intron | 10.0% |
| !!! | TTTTTTAATGTTTTTTTTGA+AGG | + | chr1_1:5818681-5818700 | Msa0003300:three_prime_UTR | 10.0% |
| !!! | CTTTTGCTTATAAAAAAAAA+TGG | + | chr1_1:5815011-5815030 | Msa0003300:intron | 15.0% |
| !!! | ATTTATATGTTTTATACGTA+TGG | - | chr1_1:5816340-5816359 | None:intergenic | 15.0% |
| !! | ATGAAAAAAAAATGAGTATA+GGG | - | chr1_1:5817248-5817267 | None:intergenic | 15.0% |
| !! | AATGAAAAAAAAATGAGTAT+AGG | - | chr1_1:5817249-5817268 | None:intergenic | 15.0% |
| !!! | ACTCATTTTTTTTTCATTAA+TGG | + | chr1_1:5817251-5817270 | Msa0003300:intron | 15.0% |
| !! | AATGTAAAATGATTTATGTT+TGG | - | chr1_1:5817522-5817541 | None:intergenic | 15.0% |
| !!! | TAAAATATCAGTTTGAAATT+TGG | + | chr1_1:5818461-5818480 | Msa0003300:three_prime_UTR | 15.0% |
| !! | ATTTCAAAACAATGTCAAAA+GGG | + | chr1_1:5815905-5815924 | Msa0003300:CDS | 20.0% |
| !! | TGAAAAAAAAATGAGTATAG+GGG | - | chr1_1:5817247-5817266 | None:intergenic | 20.0% |
| !! | ATCACTATTTAATTCATATC+AGG | + | chr1_1:5817631-5817650 | Msa0003300:intron | 20.0% |
| !!! | ATAGTGTTTTGTAATATTGT+GGG | + | chr1_1:5818864-5818883 | Msa0003300:three_prime_UTR | 20.0% |
| ! | TGACTTCAAAAACTACAATA+GGG | + | chr1_1:5815135-5815154 | Msa0003300:intron | 25.0% |
| ! | TGCTATTAAAGACCTTAATT+AGG | - | chr1_1:5815333-5815352 | None:intergenic | 25.0% |
| ! | AGTTAAAATAATCCAAAGTG+AGG | - | chr1_1:5815360-5815379 | None:intergenic | 25.0% |
| !!! | GGATTATTTTAACTCAGATT+AGG | + | chr1_1:5815366-5815385 | Msa0003300:intron | 25.0% |
| !!! | TATTTTAGTAATCTTGTTGC+TGG | + | chr1_1:5815408-5815427 | Msa0003300:CDS | 25.0% |
| !! | AAGTTGATTCCATTGTTTAA+GGG | + | chr1_1:5815438-5815457 | Msa0003300:CDS | 25.0% |
| ! | GATTTCAAAACAATGTCAAA+AGG | + | chr1_1:5815904-5815923 | Msa0003300:CDS | 25.0% |
| ! | AAACCTTTACACTGTATTAT+TGG | + | chr1_1:5816301-5816320 | Msa0003300:intron | 25.0% |
| ! | AATCCAATAATACAGTGTAA+AGG | - | chr1_1:5816307-5816326 | None:intergenic | 25.0% |
| ! | CTTAACAACTTTAAGCTTAT+GGG | + | chr1_1:5816372-5816391 | Msa0003300:intron | 25.0% |
| ! | GTAATCAGAAGTTTAGTAAA+TGG | - | chr1_1:5816461-5816480 | None:intergenic | 25.0% |
| ! | ATATTACAATAGTGTGTGAA+TGG | + | chr1_1:5816604-5816623 | Msa0003300:intron | 25.0% |
| !!! | ACAGTTGATTTTAACACATT+TGG | + | chr1_1:5816705-5816724 | Msa0003300:intron | 25.0% |
| ! | CTACAAGTTATAATCAATTC+TGG | - | chr1_1:5816758-5816777 | None:intergenic | 25.0% |
| ! | TTGAGGTTAAAAGTCAATTA+TGG | - | chr1_1:5816803-5816822 | None:intergenic | 25.0% |
| ! | AACCTCAAATTAATTGTTAG+TGG | + | chr1_1:5816815-5816834 | Msa0003300:intron | 25.0% |
| ! | AAAACATTCATAATTGTACC+TGG | - | chr1_1:5817400-5817419 | None:intergenic | 25.0% |
| ! | ACTATTTAATTCATATCAGG+TGG | + | chr1_1:5817634-5817653 | Msa0003300:intron | 25.0% |
| ! | GATAAATCATCATAAGTTGT+AGG | - | chr1_1:5818085-5818104 | None:intergenic | 25.0% |
| ! | TTATCAGAGTTGAATAACTT+TGG | + | chr1_1:5818100-5818119 | Msa0003300:CDS | 25.0% |
| ! | ATCAGAATTCATCATATTCA+TGG | + | chr1_1:5818556-5818575 | Msa0003300:three_prime_UTR | 25.0% |
| !!! | TTCTAGTTTCTACTTTTTTG+AGG | - | chr1_1:5818726-5818745 | None:intergenic | 25.0% |
| !! | GATAGTGTTTTGTAATATTG+TGG | + | chr1_1:5818863-5818882 | Msa0003300:three_prime_UTR | 25.0% |
| !! | TAGTGTTTTGTAATATTGTG+GGG | + | chr1_1:5818865-5818884 | Msa0003300:three_prime_UTR | 25.0% |
| ! | CATCATCAATATCATGAATA+AGG | + | chr1_1:5818946-5818965 | Msa0003300:three_prime_UTR | 25.0% |
| TACACAAACTCTGTTTCAAA+GGG | + | chr1_1:5814896-5814915 | Msa0003300:intron | 30.0% | |
| GTGACTTCAAAAACTACAAT+AGG | + | chr1_1:5815134-5815153 | Msa0003300:intron | 30.0% | |
| ! | TAATAGCATTTTCCTCACTT+TGG | + | chr1_1:5815345-5815364 | Msa0003300:intron | 30.0% |
| ! | AGATTAGGTTTAAAGCAACA+AGG | + | chr1_1:5815381-5815400 | Msa0003300:intron | 30.0% |
| !! | CAAGTTGATTCCATTGTTTA+AGG | + | chr1_1:5815437-5815456 | Msa0003300:CDS | 30.0% |
| ACAGATTCACTGTAATTATG+AGG | - | chr1_1:5815576-5815595 | None:intergenic | 30.0% | |
| CATAATTACAGTGAATCTGT+AGG | + | chr1_1:5815576-5815595 | Msa0003300:CDS | 30.0% | |
| GTTGAAGTTTATGACATCTA+TGG | + | chr1_1:5815611-5815630 | Msa0003300:CDS | 30.0% | |
| AATATGCTGTCTATTGATCA+GGG | + | chr1_1:5815645-5815664 | Msa0003300:CDS | 30.0% | |
| TATAATCCACATCCTTCAAT+AGG | + | chr1_1:5815936-5815955 | Msa0003300:CDS | 30.0% | |
| CTTAAGGTAATGAGAGTTAA+GGG | - | chr1_1:5816021-5816040 | None:intergenic | 30.0% | |
| TGAAATAGTTAATGTCCGAA+AGG | + | chr1_1:5816061-5816080 | Msa0003300:CDS | 30.0% | |
| GAAATAGTTAATGTCCGAAA+GGG | + | chr1_1:5816062-5816081 | Msa0003300:CDS | 30.0% | |
| !!! | ACTTTGTTGTTTTTCCAATC+CGG | - | chr1_1:5816099-5816118 | None:intergenic | 30.0% |
| ! | AGATTTTCCATCAGAATCTT+TGG | - | chr1_1:5816147-5816166 | None:intergenic | 30.0% |
| TGTTTGCATTAGAACCATTA+GGG | - | chr1_1:5816199-5816218 | None:intergenic | 30.0% | |
| TTGTTTGCATTAGAACCATT+AGG | - | chr1_1:5816200-5816219 | None:intergenic | 30.0% | |
| ! | AACAAAACTTTTGTCCATGT+TGG | + | chr1_1:5816271-5816290 | Msa0003300:CDS | 30.0% |
| CACTGTATTATTGGATTACA+AGG | + | chr1_1:5816310-5816329 | Msa0003300:intron | 30.0% | |
| GCTTAACAACTTTAAGCTTA+TGG | + | chr1_1:5816371-5816390 | Msa0003300:intron | 30.0% | |
| TAGTATGTAACAAACGATTG+AGG | + | chr1_1:5816521-5816540 | Msa0003300:intron | 30.0% | |
| ACGATTCAACCAAATAGAAA+GGG | - | chr1_1:5816562-5816581 | None:intergenic | 30.0% | |
| ATTTATCTTACCTTTGCATG+AGG | + | chr1_1:5816661-5816680 | Msa0003300:intron | 30.0% | |
| ! | ATCAATTTTACCTCATGCAA+AGG | - | chr1_1:5816674-5816693 | None:intergenic | 30.0% |
| ! | TGAGGTAAAATTGATTCTGA+AGG | + | chr1_1:5816679-5816698 | Msa0003300:intron | 30.0% |
| CAAGTTATAATCAATTCTGG+AGG | - | chr1_1:5816755-5816774 | None:intergenic | 30.0% | |
| AGGTTAAAAGTCAATTATGG+AGG | - | chr1_1:5816800-5816819 | None:intergenic | 30.0% | |
| ! | CACCACTAACAATTAATTTG+AGG | - | chr1_1:5816820-5816839 | None:intergenic | 30.0% |
| TCCTTTGAGTCAATTGAATT+TGG | - | chr1_1:5817042-5817061 | None:intergenic | 30.0% | |
| ATTTGGTATTAGTTATCCGA+AGG | + | chr1_1:5817328-5817347 | Msa0003300:intron | 30.0% | |
| ! | ATGATTTTCTCTGAATCCTT+CGG | - | chr1_1:5817347-5817366 | None:intergenic | 30.0% |
| GTATTCTGATTAAGATCCAA+GGG | + | chr1_1:5817442-5817461 | Msa0003300:intron | 30.0% | |
| TAACATACACTTTAAGTGTC+AGG | - | chr1_1:5817476-5817495 | None:intergenic | 30.0% | |
| ! | TAAGTCATATTCCTGTCTTT+TGG | + | chr1_1:5817595-5817614 | Msa0003300:intron | 30.0% |
| ! | GAATTGGTTTATTAATGCGA+GGG | + | chr1_1:5817658-5817677 | Msa0003300:CDS | 30.0% |
| GAAATGTACAAAGAAGAGTT+TGG | + | chr1_1:5817707-5817726 | Msa0003300:CDS | 30.0% | |
| GACAAGTTAATGAATGTTGA+TGG | + | chr1_1:5817830-5817849 | Msa0003300:CDS | 30.0% | |
| !! | AATGTGATGGATTCTAGAAT+TGG | + | chr1_1:5817953-5817972 | Msa0003300:CDS | 30.0% |
| !! | ATGTGATGGATTCTAGAATT+GGG | + | chr1_1:5817954-5817973 | Msa0003300:CDS | 30.0% |
| TGTTCATGTTAAACCTTTGT+TGG | - | chr1_1:5817994-5818013 | None:intergenic | 30.0% | |
| ! | CCTTTTATTGATGTCATCAT+TGG | - | chr1_1:5818191-5818210 | None:intergenic | 30.0% |
| CCAATGATGACATCAATAAA+AGG | + | chr1_1:5818188-5818207 | Msa0003300:CDS | 30.0% | |
| ! | TAAAAGGCGTAATCAAACAA+TGG | + | chr1_1:5818204-5818223 | Msa0003300:CDS | 30.0% |
| TAGTCTAACAAATCAGTATC+TGG | - | chr1_1:5818238-5818257 | None:intergenic | 30.0% | |
| ! | TTTTGATGTGTTTGGAAACA+CGG | - | chr1_1:5818651-5818670 | None:intergenic | 30.0% |
| TCCAAACACATCAAAATCTT+TGG | + | chr1_1:5818655-5818674 | Msa0003300:three_prime_UTR | 30.0% | |
| !! | TCCAAAGATTTTGATGTGTT+TGG | - | chr1_1:5818659-5818678 | None:intergenic | 30.0% |
| !! | TATAGCTTTATGATTCACTG+TGG | - | chr1_1:5818800-5818819 | None:intergenic | 30.0% |
| GTACACAAACTCTGTTTCAA+AGG | + | chr1_1:5814895-5814914 | Msa0003300:intron | 35.0% | |
| AAACACACACAGAGACAAAA+TGG | - | chr1_1:5815238-5815257 | None:intergenic | 35.0% | |
| GGATACATTGTAAGCAAGAT+TGG | - | chr1_1:5815495-5815514 | None:intergenic | 35.0% | |
| AATTACAGTGAATCTGTAGG+AGG | + | chr1_1:5815579-5815598 | Msa0003300:CDS | 35.0% | |
| GAATATGCTGTCTATTGATC+AGG | + | chr1_1:5815644-5815663 | Msa0003300:CDS | 35.0% | |
| ATATGCTGTCTATTGATCAG+GGG | + | chr1_1:5815646-5815665 | Msa0003300:CDS | 35.0% | |
| GGATACTGATATTGAAAGGA+AGG | - | chr1_1:5815777-5815796 | None:intergenic | 35.0% | |
| TCCTTTCAATATCAGTATCC+CGG | + | chr1_1:5815777-5815796 | Msa0003300:CDS | 35.0% | |
| TCAAAACAATGTCAAAAGGG+AGG | + | chr1_1:5815908-5815927 | Msa0003300:CDS | 35.0% | |
| CAAAACAATGTCAAAAGGGA+GGG | + | chr1_1:5815909-5815928 | Msa0003300:CDS | 35.0% | |
| CTTCAATAGGCCTTAATGAA+GGG | + | chr1_1:5815949-5815968 | Msa0003300:CDS | 35.0% | |
| CCTTAAGGTAATGAGAGTTA+AGG | - | chr1_1:5816022-5816041 | None:intergenic | 35.0% | |
| CCTTAACTCTCATTACCTTA+AGG | + | chr1_1:5816019-5816038 | Msa0003300:CDS | 35.0% | |
| CAATCTATGCAAGTATCTTC+AGG | + | chr1_1:5816173-5816192 | Msa0003300:CDS | 35.0% | |
| AGCAGTGAATTGGTTACAAA+AGG | + | chr1_1:5816497-5816516 | Msa0003300:intron | 35.0% | |
| ACATATTGCCCCTTTCTATT+TGG | + | chr1_1:5816550-5816569 | Msa0003300:intron | 35.0% | |
| CGATTCAACCAAATAGAAAG+GGG | - | chr1_1:5816561-5816580 | None:intergenic | 35.0% | |
| GACGATTCAACCAAATAGAA+AGG | - | chr1_1:5816563-5816582 | None:intergenic | 35.0% | |
| ! | GCATTTGATGACAGTATTGT+CGG | - | chr1_1:5816901-5816920 | None:intergenic | 35.0% |
| ! | TGTTGTGTCATCTTTTGACA+TGG | + | chr1_1:5816925-5816944 | Msa0003300:CDS | 35.0% |
| ! | GCCAAATTCAATTGACTCAA+AGG | + | chr1_1:5817038-5817057 | Msa0003300:CDS | 35.0% |
| GGATTCAGAGAAAATCATGT+TGG | + | chr1_1:5817349-5817368 | Msa0003300:CDS | 35.0% | |
| TCATAATTGTACCTGGTTTC+TGG | - | chr1_1:5817393-5817412 | None:intergenic | 35.0% | |
| CGTATTCTGATTAAGATCCA+AGG | + | chr1_1:5817441-5817460 | Msa0003300:intron | 35.0% | |
| ! | CGAATTGGTTTATTAATGCG+AGG | + | chr1_1:5817657-5817676 | Msa0003300:CDS | 35.0% |
| TTGTACATTTCTTCGACCAT+TGG | - | chr1_1:5817698-5817717 | None:intergenic | 35.0% | |
| ! | CAAAGAAGAGTTTGGTGATT+CGG | + | chr1_1:5817715-5817734 | Msa0003300:CDS | 35.0% |
| AACAACAAGGTCAAATTGCA+GGG | + | chr1_1:5817858-5817877 | Msa0003300:CDS | 35.0% | |
| GGATTCAAAGTAGTGATCAT+TGG | + | chr1_1:5817927-5817946 | Msa0003300:CDS | 35.0% | |
| TGATCATTGGACAAATGTGA+TGG | + | chr1_1:5817940-5817959 | Msa0003300:CDS | 35.0% | |
| ! | TCTAGAATTGGGAAAATGCA+AGG | + | chr1_1:5817965-5817984 | Msa0003300:CDS | 35.0% |
| ! | GAGATAGGTGGATTTGAATA+AGG | - | chr1_1:5818022-5818041 | None:intergenic | 35.0% |
| !! | TTTTGGTTGATTGAGATAGG+TGG | - | chr1_1:5818034-5818053 | None:intergenic | 35.0% |
| !!! | CCATTTTGGTTGATTGAGAT+AGG | - | chr1_1:5818037-5818056 | None:intergenic | 35.0% |
| CCTATCTCAATCAACCAAAA+TGG | + | chr1_1:5818034-5818053 | Msa0003300:CDS | 35.0% | |
| TCAATCAACCAAAATGGTGA+TGG | + | chr1_1:5818040-5818059 | Msa0003300:CDS | 35.0% | |
| ! | GAGTTGAATAACTTTGGTGT+TGG | + | chr1_1:5818106-5818125 | Msa0003300:CDS | 35.0% |
| !! | TTGAATAACTTTGGTGTTGG+TGG | + | chr1_1:5818109-5818128 | Msa0003300:CDS | 35.0% |
| ACTCTAATGCAAGTGAAACA+TGG | - | chr1_1:5818135-5818154 | None:intergenic | 35.0% | |
| TTTCACTTGCATTAGAGTTG+AGG | + | chr1_1:5818137-5818156 | Msa0003300:CDS | 35.0% | |
| !! | AACTCTGAAAGTGATGGATT+TGG | + | chr1_1:5818160-5818179 | Msa0003300:CDS | 35.0% |
| TGAATTGAAAGAACCGTGTT+TGG | + | chr1_1:5818328-5818347 | Msa0003300:exon | 35.0% | |
| ! | ACCTACGTGTATATTTTGCA+CGG | - | chr1_1:5818836-5818855 | None:intergenic | 35.0% |
| TTGTAATATTGTGGGGTGAT+TGG | + | chr1_1:5818872-5818891 | Msa0003300:three_prime_UTR | 35.0% | |
| ! | GTATGTGCAGCAATTTTGTA+AGG | + | chr1_1:5818901-5818920 | Msa0003300:three_prime_UTR | 35.0% |
| CTTTCTGCTCCCTTAAACAA+TGG | - | chr1_1:5815450-5815469 | None:intergenic | 40.0% | |
| TGCGCAAATCTCAAACTTGA+AGG | + | chr1_1:5815824-5815843 | Msa0003300:CDS | 40.0% | |
| GCGCAAATCTCAAACTTGAA+GGG | + | chr1_1:5815825-5815844 | Msa0003300:CDS | 40.0% | |
| CGCAAATCTCAAACTTGAAG+GGG | + | chr1_1:5815826-5815845 | Msa0003300:CDS | 40.0% | |
| TGCATCTCTTAAGGATGATG+AGG | + | chr1_1:5815851-5815870 | Msa0003300:CDS | 40.0% | |
| TTAAGGCCTATTGAAGGATG+TGG | - | chr1_1:5815945-5815964 | None:intergenic | 40.0% | |
| CCTTCATTAAGGCCTATTGA+AGG | - | chr1_1:5815951-5815970 | None:intergenic | 40.0% | |
| CCTTCAATAGGCCTTAATGA+AGG | + | chr1_1:5815948-5815967 | Msa0003300:CDS | 40.0% | |
| GATCAGATTGCCCTTCATTA+AGG | - | chr1_1:5815962-5815981 | None:intergenic | 40.0% | |
| !! | TGAGAGTTAAGGGCATTGTT+CGG | - | chr1_1:5816011-5816030 | None:intergenic | 40.0% |
| ! | CAACAAAGTTTTCGTGATGC+TGG | + | chr1_1:5816110-5816129 | Msa0003300:CDS | 40.0% |
| GATGCTTCCAAAGATTCTGA+TGG | + | chr1_1:5816137-5816156 | Msa0003300:CDS | 40.0% | |
| ! | ACTTTTGTCCATGTTGGATG+AGG | + | chr1_1:5816277-5816296 | Msa0003300:CDS | 40.0% |
| AAGGTTTACCTCATCCAACA+TGG | - | chr1_1:5816288-5816307 | None:intergenic | 40.0% | |
| CAGTAGCAATAGCAGTGAAT+TGG | + | chr1_1:5816487-5816506 | Msa0003300:intron | 40.0% | |
| ! | TCATCTTTTGACATGGTTGC+TGG | + | chr1_1:5816932-5816951 | Msa0003300:CDS | 40.0% |
| TGTTTGCGTGATGCTATTAG+CGG | + | chr1_1:5817016-5817035 | Msa0003300:CDS | 40.0% | |
| TTGGTGTAATGAGACAAGCT+TGG | + | chr1_1:5817140-5817159 | Msa0003300:CDS | 40.0% | |
| !! | AGTATTGACACAGAGCTTTC+AGG | - | chr1_1:5817184-5817203 | None:intergenic | 40.0% |
| AATGAGTATAGGGGAACCTA+CGG | - | chr1_1:5817238-5817257 | None:intergenic | 40.0% | |
| ATCATGTTGGCAAGACAAAC+AGG | + | chr1_1:5817362-5817381 | Msa0003300:CDS | 40.0% | |
| !! | GTGTCAGGTTATTTTACCCT+TGG | - | chr1_1:5817461-5817480 | None:intergenic | 40.0% |
| ATTCATATCAGGTGGCGAAT+TGG | + | chr1_1:5817642-5817661 | Msa0003300:intron | 40.0% | |
| TTCGAGTGTGGGATGATAAA+AGG | + | chr1_1:5817795-5817814 | Msa0003300:CDS | 40.0% | |
| TCGAGTGTGGGATGATAAAA+GGG | + | chr1_1:5817796-5817815 | Msa0003300:CDS | 40.0% | |
| GAACAACAAGGTCAAATTGC+AGG | + | chr1_1:5817857-5817876 | Msa0003300:CDS | 40.0% | |
| TCTATCCAATTCTGTGGTTG+AGG | - | chr1_1:5817906-5817925 | None:intergenic | 40.0% | |
| TCAACCACAGAATTGGATAG+AGG | + | chr1_1:5817905-5817924 | Msa0003300:CDS | 40.0% | |
| CAACCACAGAATTGGATAGA+GGG | + | chr1_1:5817906-5817925 | Msa0003300:CDS | 40.0% | |
| AATCCCTCTATCCAATTCTG+TGG | - | chr1_1:5817912-5817931 | None:intergenic | 40.0% | |
| AAATGCAAGGTGACCAACAA+AGG | + | chr1_1:5817978-5817997 | Msa0003300:CDS | 40.0% | |
| ! | TTATGCAGCCATCACCATTT+TGG | - | chr1_1:5818051-5818070 | None:intergenic | 40.0% |
| !! | AAATGGTGATGGCTGCATAA+TGG | + | chr1_1:5818051-5818070 | Msa0003300:CDS | 40.0% |
| ! | TTGAGGAACTCTGAAAGTGA+TGG | + | chr1_1:5818154-5818173 | Msa0003300:CDS | 40.0% |
| GGAAAGCAACAACACAAGTT+TGG | + | chr1_1:5818274-5818293 | Msa0003300:CDS | 40.0% | |
| CAAACTCGTGCAACAAATGT+GGG | - | chr1_1:5818303-5818322 | None:intergenic | 40.0% | |
| ACAAACTCGTGCAACAAATG+TGG | - | chr1_1:5818304-5818323 | None:intergenic | 40.0% | |
| TAACGCAGTTACCACATCAA+CGG | + | chr1_1:5818390-5818409 | Msa0003300:three_prime_UTR | 40.0% | |
| ! | ATGCATGAGATTGTTGACTG+TGG | + | chr1_1:5818530-5818549 | Msa0003300:three_prime_UTR | 40.0% |
| !! | GTAGCTTTGAGATAGATGTG+CGG | - | chr1_1:5818587-5818606 | None:intergenic | 40.0% |
| ACCGTGCAAAATATACACGT+AGG | + | chr1_1:5818832-5818851 | Msa0003300:three_prime_UTR | 40.0% | |
| CAATGCGTTCACATTGTACT+AGG | - | chr1_1:5818996-5819015 | None:intergenic | 40.0% | |
| ! | AGAGACAAAATGGAGGTACG+AGG | - | chr1_1:5815228-5815247 | None:intergenic | 45.0% |
| CACACACAGAGACAAAATGG+AGG | - | chr1_1:5815235-5815254 | None:intergenic | 45.0% | |
| ! | TCCGAACCAAGCGTTTTCTT+CGG | + | chr1_1:5815512-5815531 | Msa0003300:CDS | 45.0% |
| AAGATCCCGAAGAAAACGCT+TGG | - | chr1_1:5815521-5815540 | None:intergenic | 45.0% | |
| ! | GTTTTCTTCGGGATCTTACG+CGG | + | chr1_1:5815524-5815543 | Msa0003300:CDS | 45.0% |
| TCTTACGCGGAGATGATATC+TGG | + | chr1_1:5815537-5815556 | Msa0003300:CDS | 45.0% | |
| CTTACGCGGAGATGATATCT+GGG | + | chr1_1:5815538-5815557 | Msa0003300:CDS | 45.0% | |
| GAGCAAAACGTACAATGCCA+GGG | + | chr1_1:5815723-5815742 | Msa0003300:CDS | 45.0% | |
| GCCGGGATACTGATATTGAA+AGG | - | chr1_1:5815781-5815800 | None:intergenic | 45.0% | |
| GATTTGCGCATTCATTAGCG+AGG | - | chr1_1:5815814-5815833 | None:intergenic | 45.0% | |
| TGCATGGCATCTTTGTCTTC+TGG | + | chr1_1:5815879-5815898 | Msa0003300:CDS | 45.0% | |
| ATGGCATCTTTGTCTTCTGG+AGG | + | chr1_1:5815882-5815901 | Msa0003300:CDS | 45.0% | |
| GAATAACTGCTGATCCTTGC+AGG | - | chr1_1:5815989-5816008 | None:intergenic | 45.0% | |
| TCATTACCTTAAGGCAGCAC+AGG | + | chr1_1:5816028-5816047 | Msa0003300:CDS | 45.0% | |
| ! | CGGTTTGTTTCAAGCCCTTT+CGG | - | chr1_1:5816079-5816098 | None:intergenic | 45.0% |
| CGAAAGGGCTTGAAACAAAC+CGG | + | chr1_1:5816077-5816096 | Msa0003300:CDS | 45.0% | |
| CAAGTATCTTCAGGCCCTAA+TGG | + | chr1_1:5816182-5816201 | Msa0003300:CDS | 45.0% | |
| AATAAATGCTGTCGTTCCGC+AGG | - | chr1_1:5816242-5816261 | None:intergenic | 45.0% | |
| TGCGGAACGACAGCATTTAT+TGG | + | chr1_1:5816241-5816260 | Msa0003300:CDS | 45.0% | |
| ! | TTTGACATGGTTGCTGGTTG+CGG | + | chr1_1:5816938-5816957 | Msa0003300:CDS | 45.0% |
| AGCAAGAGCAGTGTATGGTT+CGG | - | chr1_1:5816969-5816988 | None:intergenic | 45.0% | |
| ! | CAATTGACTCAAAGGAGCCT+TGG | + | chr1_1:5817046-5817065 | Msa0003300:CDS | 45.0% |
| TAAGCTGCTGATCGACATAG+CGG | - | chr1_1:5817096-5817115 | None:intergenic | 45.0% | |
| CAAAAAGCTCTTCAGCAGCT+TGG | + | chr1_1:5817121-5817140 | Msa0003300:CDS | 45.0% | |
| AATATGACTTAGTGCGCGTC+TGG | - | chr1_1:5817586-5817605 | None:intergenic | 45.0% | |
| GCAAGTAGCAACCAAAAGAC+AGG | - | chr1_1:5817609-5817628 | None:intergenic | 45.0% | |
| TCATCGTCTCTCAGAGCTTT+CGG | - | chr1_1:5817773-5817792 | None:intergenic | 45.0% | |
| AGACGATGATGTTCGAGTGT+GGG | + | chr1_1:5817784-5817803 | Msa0003300:CDS | 45.0% | |
| !! | GTTGATGGTGCTGAACAACA+AGG | + | chr1_1:5817845-5817864 | Msa0003300:CDS | 45.0% |
| ATCCTCCTCAACCACAGAAT+TGG | + | chr1_1:5817898-5817917 | Msa0003300:CDS | 45.0% | |
| ATCCAATTCTGTGGTTGAGG+AGG | - | chr1_1:5817903-5817922 | None:intergenic | 45.0% | |
| GACTATCACTTCACAGACTC+TGG | + | chr1_1:5818253-5818272 | Msa0003300:CDS | 45.0% | |
| AAAGAACCGTGTTTGGAGAG+CGG | + | chr1_1:5818335-5818354 | Msa0003300:three_prime_UTR | 45.0% | |
| ATATGTCCGCTCTCCAAACA+CGG | - | chr1_1:5818344-5818363 | None:intergenic | 45.0% | |
| GGTAACTGCGTTAATGCATG+AGG | - | chr1_1:5818383-5818402 | None:intergenic | 45.0% | |
| GTTACCACATCAACGGTTGT+TGG | + | chr1_1:5818397-5818416 | Msa0003300:three_prime_UTR | 45.0% | |
| ATCATCCGATCCTGATCCAA+CGG | + | chr1_1:5818484-5818503 | Msa0003300:three_prime_UTR | 45.0% | |
| ATTGACCGTTGGATCAGGAT+CGG | - | chr1_1:5818492-5818511 | None:intergenic | 45.0% | |
| ACAACATTGACCGTTGGATC+AGG | - | chr1_1:5818497-5818516 | None:intergenic | 45.0% | |
| GTCATCACAACATTGACCGT+TGG | - | chr1_1:5818503-5818522 | None:intergenic | 45.0% | |
| TGATGTGTTTGGAAACACGG+TGG | - | chr1_1:5818648-5818667 | None:intergenic | 45.0% | |
| ACACAAAGCAACAGCAGCAT+AGG | - | chr1_1:5818756-5818775 | None:intergenic | 45.0% | |
| CCCGAAGAAAACGCTTGGTT+CGG | - | chr1_1:5815516-5815535 | None:intergenic | 50.0% | |
| ! | CCGAACCAAGCGTTTTCTTC+GGG | + | chr1_1:5815513-5815532 | Msa0003300:CDS | 50.0% |
| TGGATCGCTCGTACTAGCAT+TGG | - | chr1_1:5815676-5815695 | None:intergenic | 50.0% | |
| ATGCTAGTACGAGCGATCCA+AGG | + | chr1_1:5815676-5815695 | Msa0003300:CDS | 50.0% | |
| AGCGATCCAAGGACACAGTT+CGG | + | chr1_1:5815687-5815706 | Msa0003300:CDS | 50.0% | |
| CGAGCAAAACGTACAATGCC+AGG | + | chr1_1:5815722-5815741 | Msa0003300:CDS | 50.0% | |
| TTGTCCCAAGGCTAAGAGAC+AGG | - | chr1_1:5815749-5815768 | None:intergenic | 50.0% | |
| !! | AGGAAGGCATCATTGTCCCA+AGG | - | chr1_1:5815761-5815780 | None:intergenic | 50.0% |
| TAGCGAGGTGAAACTGTTGC+CGG | - | chr1_1:5815799-5815818 | None:intergenic | 50.0% | |
| GAAGGGGTCTGCATCTCTTA+AGG | + | chr1_1:5815842-5815861 | Msa0003300:CDS | 50.0% | |
| GAAGTTCCTGTGCTGCCTTA+AGG | - | chr1_1:5816037-5816056 | None:intergenic | 50.0% | |
| GGGCTTGAAACAAACCGGAT+TGG | + | chr1_1:5816082-5816101 | Msa0003300:CDS | 50.0% | |
| TTCATGTGAGCTATCGCCTG+CGG | + | chr1_1:5816223-5816242 | Msa0003300:CDS | 50.0% | |
| CGCAAAGCAAGAGCAGTGTA+TGG | - | chr1_1:5816974-5816993 | None:intergenic | 50.0% | |
| ! | ACAGCGAAAGTGACGGGAAA+TGG | - | chr1_1:5816999-5817018 | None:intergenic | 50.0% |
| ACGCAAACAGCGAAAGTGAC+GGG | - | chr1_1:5817005-5817024 | None:intergenic | 50.0% | |
| CACGCAAACAGCGAAAGTGA+CGG | - | chr1_1:5817006-5817025 | None:intergenic | 50.0% | |
| TCAAAGGAGCCTTGGAGAAC+AGG | + | chr1_1:5817054-5817073 | Msa0003300:CDS | 50.0% | |
| GTATTCCCTCCTGTTCTCCA+AGG | - | chr1_1:5817066-5817085 | None:intergenic | 50.0% | |
| CTTTCAGGAAGTCCTCTCTG+AGG | - | chr1_1:5817169-5817188 | None:intergenic | 50.0% | |
| CTGTGTCAATACTCCGTGCA+TGG | + | chr1_1:5817191-5817210 | Msa0003300:CDS | 50.0% | |
| AATGCTCGAAGAGCCATGCA+CGG | - | chr1_1:5817207-5817226 | None:intergenic | 50.0% | |
| CGAGCATTTCCTTCATCCGT+AGG | + | chr1_1:5817219-5817238 | Msa0003300:intron | 50.0% | |
| ATAGGGGAACCTACGGATGA+AGG | - | chr1_1:5817231-5817250 | None:intergenic | 50.0% | |
| AACAGGCTTGACCAGAAACC+AGG | + | chr1_1:5817379-5817398 | Msa0003300:CDS | 50.0% | |
| ! | TTAATGCGAGGGTGCGTCTT+TGG | + | chr1_1:5817669-5817688 | Msa0003300:CDS | 50.0% |
| ! | GGTGCGTCTTTGGAAACCAA+TGG | + | chr1_1:5817679-5817698 | Msa0003300:CDS | 50.0% |
| GAGACGATGATGTTCGAGTG+TGG | + | chr1_1:5817783-5817802 | Msa0003300:CDS | 50.0% | |
| CGATCCAACAACCGTTGATG+TGG | - | chr1_1:5818404-5818423 | None:intergenic | 50.0% | |
| GCTATATCAGGACGCACGAT+CGG | - | chr1_1:5818626-5818645 | None:intergenic | 50.0% | |
| GGAAACACGGTGGCTATATC+AGG | - | chr1_1:5818638-5818657 | None:intergenic | 50.0% | |
| ACGAGTCCGAACTGTGTCCT+TGG | - | chr1_1:5815696-5815715 | None:intergenic | 55.0% | |
| ! | AGGGCCTGTCTCTTAGCCTT+GGG | + | chr1_1:5815742-5815761 | Msa0003300:CDS | 55.0% |
| AGCGAGGTGAAACTGTTGCC+GGG | - | chr1_1:5815798-5815817 | None:intergenic | 55.0% | |
| GGATGATGAGGCTGAGTGCA+TGG | + | chr1_1:5815863-5815882 | Msa0003300:CDS | 55.0% | |
| CAATCTGATCCGTGCCTGCA+AGG | + | chr1_1:5815972-5815991 | Msa0003300:CDS | 55.0% | |
| ACTGCTGATCCTTGCAGGCA+CGG | - | chr1_1:5815984-5816003 | None:intergenic | 55.0% | |
| AAGGAGCCTTGGAGAACAGG+AGG | + | chr1_1:5817057-5817076 | Msa0003300:CDS | 55.0% | |
| AGGAGCCTTGGAGAACAGGA+GGG | + | chr1_1:5817058-5817077 | Msa0003300:CDS | 55.0% | |
| ! | TGATCGACATAGCGGAGACG+AGG | - | chr1_1:5817088-5817107 | None:intergenic | 55.0% |
| CAAGCTTGGAGACCTCAGAG+AGG | + | chr1_1:5817154-5817173 | Msa0003300:CDS | 55.0% | |
| CAAGGCTAAGAGACAGGCCC+TGG | - | chr1_1:5815743-5815762 | None:intergenic | 60.0% | |
| CAGGGCCTGTCTCTTAGCCT+TGG | + | chr1_1:5815741-5815760 | Msa0003300:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 5814856 | 5819023 | 5814856 | ID=Msa0003300;Name=Msa0003300 |
| chr1_1 | mRNA | 5814856 | 5819023 | 5814856 | ID=Msa0003300-mRNA-1;Parent=Msa0003300;Name=Msa0003300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.6|0.8|1|1|5|693|662 |
| chr1_1 | exon | 5814856 | 5814875 | 5814856 | ID=Msa0003300-mRNA-1:exon:1761;Parent=Msa0003300-mRNA-1 |
| chr1_1 | exon | 5815383 | 5816298 | 5815383 | ID=Msa0003300-mRNA-1:exon:1762;Parent=Msa0003300-mRNA-1 |
| chr1_1 | exon | 5816923 | 5817236 | 5816923 | ID=Msa0003300-mRNA-1:exon:1763;Parent=Msa0003300-mRNA-1 |
| chr1_1 | exon | 5817340 | 5817400 | 5817340 | ID=Msa0003300-mRNA-1:exon:1764;Parent=Msa0003300-mRNA-1 |
| chr1_1 | exon | 5817653 | 5819023 | 5817653 | ID=Msa0003300-mRNA-1:exon:1765;Parent=Msa0003300-mRNA-1 |
| chr1_1 | CDS | 5814856 | 5814875 | 5814856 | ID=Msa0003300-mRNA-1:cds;Parent=Msa0003300-mRNA-1 |
| chr1_1 | CDS | 5815383 | 5816298 | 5815383 | ID=Msa0003300-mRNA-1:cds;Parent=Msa0003300-mRNA-1 |
| chr1_1 | CDS | 5816923 | 5817236 | 5816923 | ID=Msa0003300-mRNA-1:cds;Parent=Msa0003300-mRNA-1 |
| chr1_1 | CDS | 5817340 | 5817400 | 5817340 | ID=Msa0003300-mRNA-1:cds;Parent=Msa0003300-mRNA-1 |
| chr1_1 | CDS | 5817653 | 5818330 | 5817653 | ID=Msa0003300-mRNA-1:cds;Parent=Msa0003300-mRNA-1 |
| chr1_1 | three_prime_UTR | 5818331 | 5819023 | 5818331 | ID=Msa0003300-mRNA-1:three_prime_utr;Parent=Msa0003300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
