AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0241440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241440 MtrunA17_Chr2g0292921 99.775 445 1 0 1 445 1 445 0.0 938
Msa0241440 MtrunA17_Chr4g0051631 97.072 444 13 0 1 444 1 444 0.0 913
Msa0241440 MtrunA17_Chr1g0203181 95.814 430 18 0 1 430 1 430 0.0 849
Msa0241440 MtrunA17_Chr4g0008361 95.581 430 19 0 1 430 1 430 0.0 847
Msa0241440 MtrunA17_Chr4g0008401 95.349 430 20 0 1 430 1 430 0.0 846
Msa0241440 MtrunA17_Chr7g0255791 95.349 430 20 0 1 430 1 430 0.0 845
Msa0241440 MtrunA17_Chr3g0142731 95.139 432 19 1 1 430 1 432 0.0 841
Msa0241440 MtrunA17_Chr4g0007371 94.676 432 21 1 1 430 1 432 0.0 839
Msa0241440 MtrunA17_Chr8g0393021 91.011 445 37 2 1 442 1 445 0.0 828
Msa0241440 MtrunA17_Chr8g0386781 92.093 430 34 0 1 430 1 430 0.0 825
Msa0241440 MtrunA17_Chr8g0378821 41.935 434 242 2 1 424 1 434 2.00e-125 371
Msa0241440 MtrunA17_Chr3g0140821 41.705 434 243 2 1 424 1 434 1.06e-123 367
Msa0241440 MtrunA17_Chr4g0054511 41.475 434 244 2 1 424 1 434 3.82e-123 365
Msa0241440 MtrunA17_Chr1g0206881 41.060 453 244 3 1 443 1 440 2.34e-122 363
Msa0241440 MtrunA17_Chr7g0253411 40.553 434 248 2 1 424 1 434 3.89e-122 363
Msa0241440 MtrunA17_Chr6g0461281 40.315 444 254 2 1 433 1 444 1.18e-120 359
Msa0241440 MtrunA17_Chr2g0300671 37.813 439 262 4 1 431 1 436 6.68e-100 305
Msa0241440 MtrunA17_Chr2g0300491 37.251 451 270 5 1 442 1 447 7.83e-100 306
Msa0241440 MtrunA17_Chr7g0275431 35.388 438 266 7 2 423 3 439 4.09e-97 299
Msa0241440 MtrunA17_Chr3g0109241 31.111 135 85 1 269 395 4 138 1.08e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241440 AT5G23860.2 96.047 430 17 0 1 430 1 430 0.0 851
Msa0241440 AT5G23860.1 96.047 430 17 0 1 430 1 430 0.0 851
Msa0241440 AT2G29550.1 95.824 431 18 0 1 431 1 431 0.0 848
Msa0241440 AT5G44340.1 96.047 430 17 0 1 430 1 430 0.0 848
Msa0241440 AT5G62690.1 95.581 430 19 0 1 430 1 430 0.0 847
Msa0241440 AT1G75780.1 95.128 431 20 1 1 430 1 431 0.0 847
Msa0241440 AT5G62700.1 95.581 430 19 0 1 430 1 430 0.0 847
Msa0241440 AT5G12250.1 95.349 430 20 0 1 430 1 430 0.0 847
Msa0241440 AT1G20010.1 94.896 431 21 1 1 430 1 431 0.0 844
Msa0241440 AT4G20890.1 95.581 430 19 0 1 430 1 430 0.0 842
Msa0241440 AT1G64740.1 41.475 434 244 2 1 424 1 434 5.02e-125 370
Msa0241440 AT5G19780.1 41.475 434 244 2 1 424 1 434 1.75e-124 369
Msa0241440 AT5G19770.1 41.475 434 244 2 1 424 1 434 1.75e-124 369
Msa0241440 AT4G14960.2 41.705 434 243 2 1 424 1 434 1.22e-122 364
Msa0241440 AT1G50010.1 41.475 434 244 2 1 424 1 434 8.67e-122 362
Msa0241440 AT1G04820.1 41.475 434 244 2 1 424 1 434 8.67e-122 362
Msa0241440 AT4G14960.1 41.710 386 215 2 1 376 1 386 4.43e-103 313
Msa0241440 AT5G05620.1 35.160 438 267 7 2 423 3 439 5.58e-96 297
Msa0241440 AT3G61650.1 35.160 438 267 7 2 423 3 439 9.98e-96 296

Find 151 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAAATTATGGAAAATTT+AGG 0.108177 2_2:+16974581 None:intergenic
GCAAATTACTTCCCAGAATT+TGG 0.120800 2_2:+16974500 None:intergenic
GTCTTGGATGTTTGTAATAA+TGG 0.165205 2_2:-16971355 Msa0241440:three_prime_UTR
ACCAAATCGGCGCCAAATTC+TGG 0.170796 2_2:-16974512 Msa0241440:CDS
CGTTCCACGCGCTGTTCTTA+TGG 0.191476 2_2:-16974376 Msa0241440:CDS
CCCTCGGCTCCATTTCTTCA+TGG 0.204912 2_2:-16972099 Msa0241440:CDS
ATTGAATTTGAAGGAATAAA+TGG 0.238771 2_2:+16974661 None:intergenic
AGTCTGGTGCTGGGAATAAT+TGG 0.257572 2_2:-16974272 Msa0241440:CDS
GGATCTTGAACCTGGTACTA+TGG 0.258147 2_2:-16974355 Msa0241440:CDS
TTTAATTGCATCGTCTAAAC+TGG 0.271841 2_2:-16971413 Msa0241440:three_prime_UTR
TAGTGGTGGGGAGGATTTAA+AGG 0.289287 2_2:+16974692 None:intergenic
GGAAAATTATGGAAAATTTA+GGG 0.294511 2_2:+16974582 None:intergenic
CCCAGAATTTGGCGCCGATT+TGG 0.298478 2_2:+16974511 None:intergenic
GGCTCCATTTCTTCATGGTT+GGG 0.301010 2_2:-16972094 Msa0241440:CDS
TCTTGGATGTTTGTAATAAT+GGG 0.309389 2_2:-16971354 Msa0241440:three_prime_UTR
CGGCTCCATTTCTTCATGGT+TGG 0.309752 2_2:-16972095 Msa0241440:CDS
ACGCTGGACTTAACATTATT+CGG 0.327915 2_2:+16971843 None:intergenic
CACATCTGCTGAGTCAATTC+TGG 0.333508 2_2:+16972020 None:intergenic
ACAGAAAGCGTCGCATTATA+CGG 0.351592 2_2:+16973480 None:intergenic
ATTTCAAGTGTGTCATTCAT+TGG 0.357158 2_2:-16973628 Msa0241440:CDS
TTGGGAGGTGGCACAGGTTC+AGG 0.362037 2_2:-16973609 Msa0241440:CDS
CAGTTGCATCCTGGTATTGC+TGG 0.365353 2_2:+16971613 None:intergenic
GTATTCGGTCAGTCTGGTGC+TGG 0.372974 2_2:-16974282 Msa0241440:CDS
TATATAAATATAGTTGGCTT+TGG 0.373457 2_2:-16971508 Msa0241440:three_prime_UTR
CTCTTTATGATATATGCTTC+AGG 0.376535 2_2:-16973407 Msa0241440:CDS
CTTCAATCCAGGAGATGTTC+AGG 0.379033 2_2:-16971764 Msa0241440:CDS
TCCGTTAGATCCGGTCCGTT+TGG 0.380209 2_2:-16974330 Msa0241440:CDS
AGATCAGAGTTCAGCTGTCC+AGG 0.394173 2_2:+16972152 None:intergenic
CAGTCAAAGCACGATATTGC+TGG 0.398688 2_2:+16972045 None:intergenic
CGCATTGTCCGCCTTGGATG+TGG 0.401436 2_2:+16974538 None:intergenic
TTCGAATATATAAATATAGT+TGG 0.414040 2_2:-16971514 Msa0241440:three_prime_UTR
TGGCAGAAATGAGGTGGTTA+AGG 0.420900 2_2:+16972207 None:intergenic
TGTTCTTGACATTAAAGTCT+TGG 0.421117 2_2:-16971371 Msa0241440:three_prime_UTR
CATTCATTGGGAGGTGGCAC+AGG 0.421362 2_2:-16973615 Msa0241440:CDS
CCAAATCGGCGCCAAATTCT+GGG 0.428149 2_2:-16974511 Msa0241440:CDS
GATACGTTCAAGTTGAAGTT+CGG 0.429716 2_2:+16974434 None:intergenic
ACCTTCAGTATAATGACCTT+TGG 0.430025 2_2:+16974248 None:intergenic
GAAGAGGAGGGTGCTGCTTA+AGG 0.433257 2_2:-16971561 Msa0241440:exon
TTTCAAGTGTGTCATTCATT+GGG 0.439707 2_2:-16973627 Msa0241440:CDS
GGTTCCCGCATTGTCCGCCT+TGG 0.446623 2_2:+16974532 None:intergenic
CAAACCCAACCATGAAGAAA+TGG 0.447291 2_2:+16972090 None:intergenic
GGCGCAAGGCTTTCTTGCAT+TGG 0.449590 2_2:-16971710 Msa0241440:CDS
GTCTGGTGCTGGGAATAATT+GGG 0.450039 2_2:-16974271 Msa0241440:CDS
TGGTGGGGAGGATTTAAAGG+AGG 0.463167 2_2:+16974695 None:intergenic
TAACTCTCCTGAACATCTCC+TGG 0.465563 2_2:+16971757 None:intergenic
AAGAAATGGAGCCGAGGGAA+TGG 0.467627 2_2:+16972104 None:intergenic
GATGCCATCTTAAGGCCCTT+TGG 0.468264 2_2:+16971807 None:intergenic
TGAAAGTCGATGCCATCTTA+AGG 0.471429 2_2:+16971799 None:intergenic
TTCGGTGTTTCCTTCACCCA+AGG 0.473114 2_2:-16973523 Msa0241440:CDS
TGGCGAGGGAATGGACGAAA+TGG 0.473534 2_2:-16971682 Msa0241440:CDS
AGAAATGGAGCCGAGGGAAT+GGG 0.483513 2_2:+16972105 None:intergenic
CTGGGATCCTCTTGATGTCA+AGG 0.487363 2_2:+16972064 None:intergenic
CACAGCTATGTTTAGGCGCA+AGG 0.489129 2_2:-16971724 Msa0241440:CDS
CGAGGAGGAGGAAGAAGAGG+AGG 0.490470 2_2:-16971574 Msa0241440:CDS
GGTGGCACAGGTTCAGGCAT+GGG 0.492835 2_2:-16973603 Msa0241440:CDS
CTTCGTCAGCAGTTGCATCC+TGG 0.494942 2_2:+16971604 None:intergenic
GAGAATTGTGATTGCTTGCA+AGG 0.495773 2_2:-16974180 Msa0241440:intron
GGACAATGCGGGAACCAAAT+CGG 0.495801 2_2:-16974525 Msa0241440:CDS
TGTAAAAGGAGGGAAGGAAC+GGG 0.496181 2_2:+16974622 None:intergenic
GCTTTCTTGCATTGGTACAC+TGG 0.496210 2_2:-16971702 Msa0241440:CDS
TTGGTACACTGGCGAGGGAA+TGG 0.503628 2_2:-16971691 Msa0241440:CDS
TGGCTTTGGCTTTGCGCGAG+TGG 0.504792 2_2:-16971494 Msa0241440:three_prime_UTR
GTGGGGAGGATTTAAAGGAG+GGG 0.505927 2_2:+16974697 None:intergenic
CGGTAATTCAACTTCAATCC+AGG 0.506516 2_2:-16971775 Msa0241440:CDS
ACATCCAAGGCGGACAATGC+GGG 0.508092 2_2:-16974536 Msa0241440:CDS
GAAGATTCGAGAAGAATATC+CGG 0.509806 2_2:-16973565 Msa0241440:CDS
CAGAATTGACTCAGCAGATG+TGG 0.510255 2_2:-16972019 Msa0241440:CDS
GCCATCTTAAGGCCCTTTGG+TGG 0.511497 2_2:+16971810 None:intergenic
CCCACCAAAGGGCCTTAAGA+TGG 0.517145 2_2:-16971811 Msa0241440:CDS
TTCACCCAAGGTGTCAGATA+CGG 0.517926 2_2:-16973511 Msa0241440:CDS
AGGTGGCACAGGTTCAGGCA+TGG 0.521198 2_2:-16973604 Msa0241440:CDS
CACAACCGTATCTGACACCT+TGG 0.522651 2_2:+16973506 None:intergenic
TATTCGGTCAGTCTGGTGCT+GGG 0.523291 2_2:-16974281 Msa0241440:CDS
ATGTAAAAGGAGGGAAGGAA+CGG 0.524028 2_2:+16974621 None:intergenic
TTACGAGGAGGAGGAAGAAG+AGG 0.524747 2_2:-16971577 Msa0241440:CDS
GTCAAATAACGGCCATGACG+TGG 0.524967 2_2:+16971966 None:intergenic
ACTTGTTGTCTACGTTTCCC+TGG 0.525887 2_2:-16972170 Msa0241440:CDS
CTCATTTCTGCCACTATGAG+TGG 0.528073 2_2:-16972197 Msa0241440:CDS
TGGAACGTACCTTCCACCAC+TGG 0.531376 2_2:+16974392 None:intergenic
TTGCTGATGCAGTCAAATAA+CGG 0.533841 2_2:+16971955 None:intergenic
ACCAAACGGACCGGATCTAA+CGG 0.534715 2_2:+16974329 None:intergenic
ACTCTTCATACTTTGTTGAG+TGG 0.537980 2_2:-16971869 Msa0241440:CDS
GGTGGGGAGGATTTAAAGGA+GGG 0.543741 2_2:+16974696 None:intergenic
TGACCGAATACAAAATTATC+CGG 0.543879 2_2:+16974294 None:intergenic
AGCAGTTCACAGCTATGTTT+AGG 0.544065 2_2:-16971731 Msa0241440:CDS
CGAAGAAGATTACGAGGAGG+AGG 0.548580 2_2:-16971586 Msa0241440:CDS
CTAACGGAATCCATAGTACC+AGG 0.550782 2_2:+16974345 None:intergenic
TGCAGATGAATGCATGGTGT+TGG 0.555555 2_2:-16973439 Msa0241440:CDS
TTTGAAGGAATAAATGGAAG+GGG 0.555985 2_2:+16974667 None:intergenic
CAAGTGTGTCATTCATTGGG+AGG 0.556985 2_2:-16973624 Msa0241440:CDS
AAGATGGCATCGACTTTCAT+CGG 0.558252 2_2:-16971795 Msa0241440:CDS
TGCTGAGTACCAGCAATACC+AGG 0.558337 2_2:-16971622 Msa0241440:CDS
GGACGAAAGATCTGACCAAA+CGG 0.560082 2_2:+16974315 None:intergenic
ACTATGGATTCCGTTAGATC+CGG 0.561697 2_2:-16974339 Msa0241440:CDS
ACAAGTAACTCCACTCATAG+TGG 0.562458 2_2:+16972187 None:intergenic
AAGATCATTCATGTTACTCT+CGG 0.562469 2_2:+16971647 None:intergenic
CCATGAAGAAATGGAGCCGA+GGG 0.563071 2_2:+16972099 None:intergenic
CACTCATAGTGGCAGAAATG+AGG 0.563320 2_2:+16972198 None:intergenic
GTTTGGTCAGATCTTTCGTC+CGG 0.564080 2_2:-16974313 Msa0241440:CDS
AACGTCAACATCATACGATC+CGG 0.564605 2_2:+16973546 None:intergenic
TTGTGATGTAAAAGGAGGGA+AGG 0.566392 2_2:+16974616 None:intergenic
GTTCTTATGGATCTTGAACC+TGG 0.570029 2_2:-16974363 Msa0241440:CDS
CCATCTTAAGGCCCTTTGGT+GGG 0.570315 2_2:+16971811 None:intergenic
TTAATTGCATCGTCTAAACT+GGG 0.571546 2_2:-16971412 Msa0241440:three_prime_UTR
TGGGATCCTCTTGATGTCAA+GGG 0.572629 2_2:+16972065 None:intergenic
GAAGTAATTTGCGACGAACA+CGG 0.575225 2_2:-16974489 Msa0241440:CDS
GCCAAAGGTCATTATACTGA+AGG 0.579249 2_2:-16974249 Msa0241440:CDS
GTGTGTGATATCCCACCAAA+GGG 0.580262 2_2:-16971822 Msa0241440:CDS
GCTGGGAATAATTGGGCCAA+AGG 0.582199 2_2:-16974264 Msa0241440:CDS
GTGTGTCATTCATTGGGAGG+TGG 0.584446 2_2:-16973621 Msa0241440:CDS
TCAATCTTATCCCATTCCCT+CGG 0.585031 2_2:-16972115 Msa0241440:CDS
AATTTGAAGGAATAAATGGA+AGG 0.586500 2_2:+16974665 None:intergenic
ACCATGAAGAAATGGAGCCG+AGG 0.587475 2_2:+16972098 None:intergenic
AAAGATCTGACCAAACGGAC+CGG 0.588290 2_2:+16974320 None:intergenic
GATCAGAGTTCAGCTGTCCA+GGG 0.588703 2_2:+16972153 None:intergenic
CACATCCAAGGCGGACAATG+CGG 0.592637 2_2:-16974537 Msa0241440:CDS
TTTGCACCCTTGACATCAAG+AGG 0.593193 2_2:-16972071 Msa0241440:CDS
AGAGAAATCCTCCACATCCA+AGG 0.593831 2_2:-16974549 Msa0241440:CDS
CTTGCATTGGTACACTGGCG+AGG 0.594977 2_2:-16971697 Msa0241440:CDS
GTATCTGACACCTTGGGTGA+AGG 0.595746 2_2:+16973513 None:intergenic
AGTCAAAGCACGATATTGCT+GGG 0.595864 2_2:+16972046 None:intergenic
ATTTGAAGGAATAAATGGAA+GGG 0.596849 2_2:+16974666 None:intergenic
ACAACCGTATCTGACACCTT+GGG 0.598505 2_2:+16973507 None:intergenic
TTGCATTGGTACACTGGCGA+GGG 0.601735 2_2:-16971696 Msa0241440:CDS
AAAAGGAGGGAAGGAACGGG+TGG 0.602432 2_2:+16974625 None:intergenic
ATTGTCCGCCTTGGATGTGG+AGG 0.602768 2_2:+16974541 None:intergenic
CGTGTGTGATATCCCACCAA+AGG 0.606021 2_2:-16971823 Msa0241440:CDS
CAAGGTGTCAGATACGGTTG+TGG 0.608854 2_2:-16973505 Msa0241440:CDS
TAATTGTGGGGTTGTACTCG+AGG 0.611164 2_2:+16974728 None:intergenic
ACAATGAAGCCAGTGGTGGA+AGG 0.613831 2_2:-16974401 Msa0241440:CDS
TTTGTTGTGATGTAAAAGGA+GGG 0.618219 2_2:+16974612 None:intergenic
TTGAAGGAATAAATGGAAGG+GGG 0.623829 2_2:+16974668 None:intergenic
TATTACAATGAAGCCAGTGG+TGG 0.624350 2_2:-16974405 Msa0241440:CDS
CCTTTGTGCTCATCTTACCA+CGG 0.624983 2_2:+16971928 None:intergenic
AGAATTGACTCAGCAGATGT+GGG 0.640891 2_2:-16972018 Msa0241440:CDS
TGCTGACGAAGAAGATTACG+AGG 0.642295 2_2:-16971592 Msa0241440:CDS
GAGGAGGAGGAAGAAGAGGA+GGG 0.646272 2_2:-16971573 Msa0241440:CDS
AATTGTGGGGTTGTACTCGA+GGG 0.651489 2_2:+16974729 None:intergenic
GTCTATTACAATGAAGCCAG+TGG 0.654009 2_2:-16974408 Msa0241440:CDS
TGTGCTGCTGATCCACGTCA+TGG 0.657752 2_2:-16971978 Msa0241440:CDS
TCATAGTGGCAGAAATGAGG+TGG 0.661184 2_2:+16972201 None:intergenic
ACTGCATCAGCAATGTTCCG+TGG 0.665778 2_2:-16971945 Msa0241440:CDS
AGATCCATAAGAACAGCGCG+TGG 0.666492 2_2:+16974372 None:intergenic
TGAGAATGCAGATGAATGCA+TGG 0.686010 2_2:-16973445 Msa0241440:CDS
CCGTGGTAAGATGAGCACAA+AGG 0.695473 2_2:-16971928 Msa0241440:CDS
GATCACACCGGAAAATACAA+CGG 0.700192 2_2:-16974462 Msa0241440:CDS
TGGTGGGATATCACACACGC+TGG 0.703893 2_2:+16971827 None:intergenic
TGACGAAGAAGATTACGAGG+AGG 0.729144 2_2:-16971589 Msa0241440:CDS
GAAATCCTCCACATCCAAGG+CGG 0.734127 2_2:-16974546 Msa0241440:CDS
GGACGAAATGGAGTTCACTG+AGG 0.756207 2_2:-16971670 Msa0241440:CDS
GAACACGGAATTGATCACAC+CGG 0.763914 2_2:-16974474 Msa0241440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATGATTATGAATTTTTA+TGG - chr2_2:16972358-16972377 Msa0241440:intron 10.0%
!! TATTATATGTTATGTAAATA+TGG - chr2_2:16972918-16972937 Msa0241440:intron 10.0%
!!! TGTATTAACATTTTTTATAT+AGG - chr2_2:16973292-16973311 Msa0241440:intron 10.0%
!!! TTTTTTTTTTTTTTTGTGTG+TGG - chr2_2:16972393-16972412 Msa0241440:intron 15.0%
!!! AATTTTGATGTGATTAATTT+AGG - chr2_2:16972712-16972731 Msa0241440:intron 15.0%
!! AAAAAAAAAAGAATAACTGT+AGG - chr2_2:16973170-16973189 Msa0241440:intron 15.0%
!! TTCAATTAACAAATGAAATT+TGG - chr2_2:16973599-16973618 Msa0241440:CDS 15.0%
!! TTCGAATATATAAATATAGT+TGG - chr2_2:16974534-16974553 Msa0241440:CDS 15.0%
!! ATTGAATTTGAAGGAATAAA+TGG + chr2_2:16971390-16971409 None:intergenic 20.0%
!! GGAAAATTATGGAAAATTTA+GGG + chr2_2:16971469-16971488 None:intergenic 20.0%
!!! CAATGTTGAATATCATTTTT+TGG - chr2_2:16972153-16972172 Msa0241440:CDS 20.0%
!! AAATTAAAAAACTTACACGT+TGG + chr2_2:16972685-16972704 None:intergenic 20.0%
!! ATCTAATCTGAATAACATTT+GGG + chr2_2:16972817-16972836 None:intergenic 20.0%
!! AATCTAATCTGAATAACATT+TGG + chr2_2:16972818-16972837 None:intergenic 20.0%
!!! TGTAGGTAATTTTTAGATTT+GGG - chr2_2:16973004-16973023 Msa0241440:intron 20.0%
!! AATTACATTAATGAAAGTCT+GGG + chr2_2:16973079-16973098 None:intergenic 20.0%
!! GTTAAAGACAATTACATTAA+TGG + chr2_2:16973088-16973107 None:intergenic 20.0%
!!! AACATTTTTTATATAGGTAG+TGG - chr2_2:16973298-16973317 Msa0241440:intron 20.0%
!! TAGTAATTGATATGTTAACA+TGG - chr2_2:16973570-16973589 Msa0241440:CDS 20.0%
!! ATTAAACACGATTATATTGA+TGG - chr2_2:16973622-16973641 Msa0241440:CDS 20.0%
!! TTAAACACGATTATATTGAT+GGG - chr2_2:16973623-16973642 Msa0241440:CDS 20.0%
!!! CTTGATTTTATTATTTCAGT+TGG - chr2_2:16973815-16973834 Msa0241440:intron 20.0%
!!! TATATAAATATAGTTGGCTT+TGG - chr2_2:16974540-16974559 Msa0241440:CDS 20.0%
! ATTTGAAGGAATAAATGGAA+GGG + chr2_2:16971385-16971404 None:intergenic 25.0%
! AATTTGAAGGAATAAATGGA+AGG + chr2_2:16971386-16971405 None:intergenic 25.0%
!!! GATGTTTTGATTGAATTTGA+AGG + chr2_2:16971399-16971418 None:intergenic 25.0%
!!! TGATTTTGTTGTGATGTAAA+AGG + chr2_2:16971443-16971462 None:intergenic 25.0%
! GGGAAAATTATGGAAAATTT+AGG + chr2_2:16971470-16971489 None:intergenic 25.0%
!!! CATCCTTTTTGTTTTTAGTA+AGG - chr2_2:16971909-16971928 Msa0241440:CDS 25.0%
! CAACCTTACTAAAAACAAAA+AGG + chr2_2:16971915-16971934 None:intergenic 25.0%
!!! TGTTCTATTTGATTTGAATG+AGG - chr2_2:16972087-16972106 Msa0241440:CDS 25.0%
!!! GTTCTATTTGATTTGAATGA+GGG - chr2_2:16972088-16972107 Msa0241440:CDS 25.0%
! AAAAAAACTCACAGCATAAA+CGG + chr2_2:16972236-16972255 None:intergenic 25.0%
! AACATCGCTAAAAAAGAAAT+AGG + chr2_2:16972269-16972288 None:intergenic 25.0%
! CAATAGTAATTCATCCAAAT+CGG + chr2_2:16972320-16972339 None:intergenic 25.0%
!!! CTGTAGGTAATTTTTAGATT+TGG - chr2_2:16973003-16973022 Msa0241440:intron 25.0%
! CAATTACATTAATGAAAGTC+TGG + chr2_2:16973080-16973099 None:intergenic 25.0%
! GTCTTTAACGTCAAAAAAAA+AGG - chr2_2:16973099-16973118 Msa0241440:intron 25.0%
! TCATATAGCTAATGTTAACA+AGG - chr2_2:16973393-16973412 Msa0241440:CDS 25.0%
!!! ACTTTATTTGCACTTTTAGT+TGG - chr2_2:16973768-16973787 Msa0241440:intron 25.0%
! TCTTGGATGTTTGTAATAAT+GGG - chr2_2:16974694-16974713 Msa0241440:five_prime_UTR 25.0%
TTTGAAGGAATAAATGGAAG+GGG + chr2_2:16971384-16971403 None:intergenic 30.0%
! TTTGTTGTGATGTAAAAGGA+GGG + chr2_2:16971439-16971458 None:intergenic 30.0%
!! TTTTGTTGTGATGTAAAAGG+AGG + chr2_2:16971440-16971459 None:intergenic 30.0%
! TCATTTTCTCGGGAAAATTA+TGG + chr2_2:16971480-16971499 None:intergenic 30.0%
TGACCGAATACAAAATTATC+CGG + chr2_2:16971757-16971776 None:intergenic 30.0%
ATAATTGCGATGTTGAATTG+TGG - chr2_2:16971975-16971994 Msa0241440:CDS 30.0%
GAAAATTATGATTGCTTGCA+AGG - chr2_2:16972202-16972221 Msa0241440:CDS 30.0%
!!! TTTTTTTTTTTGTGTGTGGC+AGG - chr2_2:16972397-16972416 Msa0241440:intron 30.0%
! ATTTCAAGTGTGTCATTCAT+TGG - chr2_2:16972420-16972439 Msa0241440:intron 30.0%
! TTTCAAGTGTGTCATTCATT+GGG - chr2_2:16972421-16972440 Msa0241440:intron 30.0%
CTCTTTATGATATATGCTTC+AGG - chr2_2:16972641-16972660 Msa0241440:intron 30.0%
TTATATGATGTTGTCTGAGT+TGG - chr2_2:16972749-16972768 Msa0241440:intron 30.0%
GACACATTAAGAATAACTGT+AGG - chr2_2:16972987-16973006 Msa0241440:intron 30.0%
CAATTACATTAATGGAAGTC+TGG + chr2_2:16973132-16973151 None:intergenic 30.0%
!! TATATAGGTAGTGGAAGATT+AGG - chr2_2:16973307-16973326 Msa0241440:intron 30.0%
TAGCTAATGTTAACAAGGAA+AGG - chr2_2:16973398-16973417 Msa0241440:CDS 30.0%
TTGAATTTCTGCCATCAATT+TGG - chr2_2:16973710-16973729 Msa0241440:intron 30.0%
TGACATGATAACCAAATTGA+TGG + chr2_2:16973724-16973743 None:intergenic 30.0%
AAGATCATTCATGTTACTCT+CGG + chr2_2:16974404-16974423 None:intergenic 30.0%
TTTAATTGCATCGTCTAAAC+TGG - chr2_2:16974635-16974654 Msa0241440:five_prime_UTR 30.0%
TTAATTGCATCGTCTAAACT+GGG - chr2_2:16974636-16974655 Msa0241440:five_prime_UTR 30.0%
TGTTCTTGACATTAAAGTCT+TGG - chr2_2:16974677-16974696 Msa0241440:five_prime_UTR 30.0%
GTCTTGGATGTTTGTAATAA+TGG - chr2_2:16974693-16974712 Msa0241440:five_prime_UTR 30.0%
!!! CTTGTTTGCTTTTTTAACCT+TGG - chr2_2:16974749-16974768 Msa0241440:five_prime_UTR 30.0%
! AGGGGTTTTTGTGTAATTGT+GGG + chr2_2:16971336-16971355 None:intergenic 35.0%
TTGAAGGAATAAATGGAAGG+GGG + chr2_2:16971383-16971402 None:intergenic 35.0%
! AGGATTTCTCTCATTTTCTC+GGG + chr2_2:16971490-16971509 None:intergenic 35.0%
! GAGGATTTCTCTCATTTTCT+CGG + chr2_2:16971491-16971510 None:intergenic 35.0%
GCAAATTACTTCCCAGAATT+TGG + chr2_2:16971551-16971570 None:intergenic 35.0%
!! GATACGTTCAAGTTGAAGTT+CGG + chr2_2:16971617-16971636 None:intergenic 35.0%
! CGTCCGGATAATTTTGTATT+CGG - chr2_2:16971751-16971770 Msa0241440:CDS 35.0%
! AATTTTGTATTCGGTCAGTC+TGG - chr2_2:16971760-16971779 Msa0241440:CDS 35.0%
ACCTTCAGTATAATGACCTT+TGG + chr2_2:16971803-16971822 None:intergenic 35.0%
! TATATTGTGAGTTTGTTCGC+AGG - chr2_2:16972009-16972028 Msa0241440:CDS 35.0%
!!! ATTTTTTGGCGATGTTGAAC+TGG - chr2_2:16972167-16972186 Msa0241440:CDS 35.0%
! TTCGTTGAATTCTACCGATT+TGG - chr2_2:16972303-16972322 Msa0241440:intron 35.0%
GAAGATTCGAGAAGAATATC+CGG - chr2_2:16972483-16972502 Msa0241440:intron 35.0%
! TCGTATGATGTTGACGTTTT+CGG - chr2_2:16972507-16972526 Msa0241440:intron 35.0%
GTAAAGCTTGTCAATGAACA+TGG - chr2_2:16973192-16973211 Msa0241440:intron 35.0%
TCAATGAACATGGATCACAA+TGG - chr2_2:16973202-16973221 Msa0241440:intron 35.0%
TTAACCTCACTTGTGTTAGA+AGG - chr2_2:16973254-16973273 Msa0241440:intron 35.0%
TCACTTGTGTTAGAAGGATT+CGG - chr2_2:16973260-16973279 Msa0241440:intron 35.0%
AGCAGCAACAAAACAAGAAT+GGG + chr2_2:16973466-16973485 None:intergenic 35.0%
CCACAGATAATCATGATTCA+TGG + chr2_2:16973508-16973527 None:intergenic 35.0%
CCATGAATCATGATTATCTG+TGG - chr2_2:16973505-16973524 Msa0241440:CDS 35.0%
AGTTGTGTGCTACAGATAAA+CGG - chr2_2:16973540-16973559 Msa0241440:CDS 35.0%
! TCTTTGTTCTTACTGATTGC+TGG - chr2_2:16973675-16973694 Msa0241440:intron 35.0%
TTGCTGATGCAGTCAAATAA+CGG + chr2_2:16974096-16974115 None:intergenic 35.0%
ACTCTTCATACTTTGTTGAG+TGG - chr2_2:16974179-16974198 Msa0241440:intron 35.0%
ACGCTGGACTTAACATTATT+CGG + chr2_2:16974208-16974227 None:intergenic 35.0%
!!! ACTCGAGGGTATTTTTGGAA+GGG + chr2_2:16971308-16971327 None:intergenic 40.0%
!!! TACTCGAGGGTATTTTTGGA+AGG + chr2_2:16971309-16971328 None:intergenic 40.0%
!!! GTTGTACTCGAGGGTATTTT+TGG + chr2_2:16971313-16971332 None:intergenic 40.0%
! GGGGTTTTTGTGTAATTGTG+GGG + chr2_2:16971335-16971354 None:intergenic 40.0%
! GAGGGGTTTTTGTGTAATTG+TGG + chr2_2:16971337-16971356 None:intergenic 40.0%
AATAAATGGAAGGGGGTTAG+TGG + chr2_2:16971376-16971395 None:intergenic 40.0%
ATGTAAAAGGAGGGAAGGAA+CGG + chr2_2:16971430-16971449 None:intergenic 40.0%
TTGTGATGTAAAAGGAGGGA+AGG + chr2_2:16971435-16971454 None:intergenic 40.0%
! GAAGTAATTTGCGACGAACA+CGG - chr2_2:16971559-16971578 Msa0241440:exon 40.0%
GATCACACCGGAAAATACAA+CGG - chr2_2:16971586-16971605 Msa0241440:CDS 40.0%
GTCTATTACAATGAAGCCAG+TGG - chr2_2:16971640-16971659 Msa0241440:CDS 40.0%
TATTACAATGAAGCCAGTGG+TGG - chr2_2:16971643-16971662 Msa0241440:CDS 40.0%
GTTCTTATGGATCTTGAACC+TGG - chr2_2:16971685-16971704 Msa0241440:CDS 40.0%
ACTATGGATTCCGTTAGATC+CGG - chr2_2:16971709-16971728 Msa0241440:CDS 40.0%
GCCAAAGGTCATTATACTGA+AGG - chr2_2:16971799-16971818 Msa0241440:CDS 40.0%
GAGAATTGTGATTGCTTGCA+AGG - chr2_2:16971868-16971887 Msa0241440:CDS 40.0%
AACGTCAACATCATACGATC+CGG + chr2_2:16972505-16972524 None:intergenic 40.0%
!! ACAGAAAGCGTCGCATTATA+CGG + chr2_2:16972571-16972590 None:intergenic 40.0%
TGAGAATGCAGATGAATGCA+TGG - chr2_2:16972603-16972622 Msa0241440:intron 40.0%
!! ATAGTTGATAGACGCAAAGC+TGG - chr2_2:16972844-16972863 Msa0241440:intron 40.0%
!! TAGTTGATAGACGCAAAGCT+GGG - chr2_2:16972845-16972864 Msa0241440:intron 40.0%
AAGCTGGGTAGGATTAAGAA+TGG - chr2_2:16972860-16972879 Msa0241440:intron 40.0%
GAATCCTTCTAACACAAGTG+AGG + chr2_2:16973261-16973280 None:intergenic 40.0%
CAGCAGCAACAAAACAAGAA+TGG + chr2_2:16973467-16973486 None:intergenic 40.0%
GATTATATTGATGGGACCGT+GGG - chr2_2:16973631-16973650 Msa0241440:CDS 40.0%
! TTGTTCTTACTGATTGCTGG+TGG - chr2_2:16973678-16973697 Msa0241440:intron 40.0%
ACAAGTAACTCCACTCATAG+TGG + chr2_2:16973864-16973883 None:intergenic 40.0%
TCAATCTTATCCCATTCCCT+CGG - chr2_2:16973933-16973952 Msa0241440:intron 40.0%
CAAACCCAACCATGAAGAAA+TGG + chr2_2:16973961-16973980 None:intergenic 40.0%
AGTCAAAGCACGATATTGCT+GGG + chr2_2:16974005-16974024 None:intergenic 40.0%
! AGAATTGACTCAGCAGATGT+GGG - chr2_2:16974030-16974049 Msa0241440:intron 40.0%
TGAAAGTCGATGCCATCTTA+AGG + chr2_2:16974252-16974271 None:intergenic 40.0%
!! AAGATGGCATCGACTTTCAT+CGG - chr2_2:16974253-16974272 Msa0241440:CDS 40.0%
CGGTAATTCAACTTCAATCC+AGG - chr2_2:16974273-16974292 Msa0241440:CDS 40.0%
AGCAGTTCACAGCTATGTTT+AGG - chr2_2:16974317-16974336 Msa0241440:CDS 40.0%
!! AAACTGGGTTTTGCTGTCAA+TGG - chr2_2:16974651-16974670 Msa0241440:five_prime_UTR 40.0%
AATTGTGGGGTTGTACTCGA+GGG + chr2_2:16971322-16971341 None:intergenic 45.0%
TAATTGTGGGGTTGTACTCG+AGG + chr2_2:16971323-16971342 None:intergenic 45.0%
! TAGTGGTGGGGAGGATTTAA+AGG + chr2_2:16971359-16971378 None:intergenic 45.0%
TGTAAAAGGAGGGAAGGAAC+GGG + chr2_2:16971429-16971448 None:intergenic 45.0%
AGAGAAATCCTCCACATCCA+AGG - chr2_2:16971499-16971518 Msa0241440:three_prime_UTR 45.0%
GAACACGGAATTGATCACAC+CGG - chr2_2:16971574-16971593 Msa0241440:CDS 45.0%
! GGAATCGCCGTTGTATTTTC+CGG + chr2_2:16971596-16971615 None:intergenic 45.0%
GGATCTTGAACCTGGTACTA+TGG - chr2_2:16971693-16971712 Msa0241440:CDS 45.0%
CTAACGGAATCCATAGTACC+AGG + chr2_2:16971706-16971725 None:intergenic 45.0%
AAAGATCTGACCAAACGGAC+CGG + chr2_2:16971731-16971750 None:intergenic 45.0%
GGACGAAAGATCTGACCAAA+CGG + chr2_2:16971736-16971755 None:intergenic 45.0%
GTTTGGTCAGATCTTTCGTC+CGG - chr2_2:16971735-16971754 Msa0241440:CDS 45.0%
! AGTCTGGTGCTGGGAATAAT+TGG - chr2_2:16971776-16971795 Msa0241440:CDS 45.0%
! GTCTGGTGCTGGGAATAATT+GGG - chr2_2:16971777-16971796 Msa0241440:CDS 45.0%
! CAAGTGTGTCATTCATTGGG+AGG - chr2_2:16972424-16972443 Msa0241440:intron 45.0%
! TTCACCCAAGGTGTCAGATA+CGG - chr2_2:16972537-16972556 Msa0241440:intron 45.0%
ACAACCGTATCTGACACCTT+GGG + chr2_2:16972544-16972563 None:intergenic 45.0%
TGCAGATGAATGCATGGTGT+TGG - chr2_2:16972609-16972628 Msa0241440:intron 45.0%
! CAGTACAACCTTGCTCTAGA+TGG - chr2_2:16972943-16972962 Msa0241440:intron 45.0%
! TACAACCTTGCTCTAGATGG+AGG - chr2_2:16972946-16972965 Msa0241440:intron 45.0%
! ATCTACCTCCATCTAGAGCA+AGG + chr2_2:16972954-16972973 None:intergenic 45.0%
GAGACTGCAGAAATACAAGG+CGG + chr2_2:16973041-16973060 None:intergenic 45.0%
! GCCTTGTATTTCTGCAGTCT+CGG - chr2_2:16973040-16973059 Msa0241440:intron 45.0%
CGATTATATTGATGGGACCG+TGG - chr2_2:16973630-16973649 Msa0241440:CDS 45.0%
TGGCAGAAATGAGGTGGTTA+AGG + chr2_2:16973844-16973863 None:intergenic 45.0%
TCATAGTGGCAGAAATGAGG+TGG + chr2_2:16973850-16973869 None:intergenic 45.0%
CACTCATAGTGGCAGAAATG+AGG + chr2_2:16973853-16973872 None:intergenic 45.0%
CTCATTTCTGCCACTATGAG+TGG - chr2_2:16973851-16973870 Msa0241440:intron 45.0%
!! ACTTGTTGTCTACGTTTCCC+TGG - chr2_2:16973878-16973897 Msa0241440:intron 45.0%
GGCTCCATTTCTTCATGGTT+GGG - chr2_2:16973954-16973973 Msa0241440:intron 45.0%
TTTGCACCCTTGACATCAAG+AGG - chr2_2:16973977-16973996 Msa0241440:intron 45.0%
TGGGATCCTCTTGATGTCAA+GGG + chr2_2:16973986-16974005 None:intergenic 45.0%
CAGTCAAAGCACGATATTGC+TGG + chr2_2:16974006-16974025 None:intergenic 45.0%
CACATCTGCTGAGTCAATTC+TGG + chr2_2:16974031-16974050 None:intergenic 45.0%
! CAGAATTGACTCAGCAGATG+TGG - chr2_2:16974029-16974048 Msa0241440:intron 45.0%
CCTTTGTGCTCATCTTACCA+CGG + chr2_2:16974123-16974142 None:intergenic 45.0%
GTGTGTGATATCCCACCAAA+GGG - chr2_2:16974226-16974245 Msa0241440:CDS 45.0%
CTTCAATCCAGGAGATGTTC+AGG - chr2_2:16974284-16974303 Msa0241440:CDS 45.0%
TAACTCTCCTGAACATCTCC+TGG + chr2_2:16974294-16974313 None:intergenic 45.0%
! GCTTTCTTGCATTGGTACAC+TGG - chr2_2:16974346-16974365 Msa0241440:CDS 45.0%
TGCTGACGAAGAAGATTACG+AGG - chr2_2:16974456-16974475 Msa0241440:CDS 45.0%
TGACGAAGAAGATTACGAGG+AGG - chr2_2:16974459-16974478 Msa0241440:CDS 45.0%
GTGGGGAGGATTTAAAGGAG+GGG + chr2_2:16971354-16971373 None:intergenic 50.0%
GGTGGGGAGGATTTAAAGGA+GGG + chr2_2:16971355-16971374 None:intergenic 50.0%
TGGTGGGGAGGATTTAAAGG+AGG + chr2_2:16971356-16971375 None:intergenic 50.0%
! AATGGAAGGGGGTTAGTGGT+GGG + chr2_2:16971372-16971391 None:intergenic 50.0%
! AAATGGAAGGGGGTTAGTGG+TGG + chr2_2:16971373-16971392 None:intergenic 50.0%
GAAATCCTCCACATCCAAGG+CGG - chr2_2:16971502-16971521 Msa0241440:three_prime_UTR 50.0%
GGACAATGCGGGAACCAAAT+CGG - chr2_2:16971523-16971542 Msa0241440:three_prime_UTR 50.0%
ACCAAATCGGCGCCAAATTC+TGG - chr2_2:16971536-16971555 Msa0241440:three_prime_UTR 50.0%
CCAAATCGGCGCCAAATTCT+GGG - chr2_2:16971537-16971556 Msa0241440:three_prime_UTR 50.0%
! ACAATGAAGCCAGTGGTGGA+AGG - chr2_2:16971647-16971666 Msa0241440:CDS 50.0%
AGATCCATAAGAACAGCGCG+TGG + chr2_2:16971679-16971698 None:intergenic 50.0%
ACCAAACGGACCGGATCTAA+CGG + chr2_2:16971722-16971741 None:intergenic 50.0%
TATTCGGTCAGTCTGGTGCT+GGG - chr2_2:16971767-16971786 Msa0241440:CDS 50.0%
GCTGGGAATAATTGGGCCAA+AGG - chr2_2:16971784-16971803 Msa0241440:CDS 50.0%
! GTGTGTCATTCATTGGGAGG+TGG - chr2_2:16972427-16972446 Msa0241440:intron 50.0%
!! TTCGGTGTTTCCTTCACCCA+AGG - chr2_2:16972525-16972544 Msa0241440:intron 50.0%
GTATCTGACACCTTGGGTGA+AGG + chr2_2:16972538-16972557 None:intergenic 50.0%
CACAACCGTATCTGACACCT+TGG + chr2_2:16972545-16972564 None:intergenic 50.0%
! CAAGGTGTCAGATACGGTTG+TGG - chr2_2:16972543-16972562 Msa0241440:intron 50.0%
TGATAGACGCAAAGCTGGGT+AGG - chr2_2:16972849-16972868 Msa0241440:intron 50.0%
GCCGAGACTGCAGAAATACA+AGG + chr2_2:16973044-16973063 None:intergenic 50.0%
TATATTGATGGGACCGTGGG+AGG - chr2_2:16973634-16973653 Msa0241440:intron 50.0%
ATATTGATGGGACCGTGGGA+GGG - chr2_2:16973635-16973654 Msa0241440:intron 50.0%
! GGAGGGTTCAAGTGGGTTTA+GGG - chr2_2:16973652-16973671 Msa0241440:intron 50.0%
GATCAGAGTTCAGCTGTCCA+GGG + chr2_2:16973898-16973917 None:intergenic 50.0%
AGATCAGAGTTCAGCTGTCC+AGG + chr2_2:16973899-16973918 None:intergenic 50.0%
AGAAATGGAGCCGAGGGAAT+GGG + chr2_2:16973946-16973965 None:intergenic 50.0%
AAGAAATGGAGCCGAGGGAA+TGG + chr2_2:16973947-16973966 None:intergenic 50.0%
CCATGAAGAAATGGAGCCGA+GGG + chr2_2:16973952-16973971 None:intergenic 50.0%
ACCATGAAGAAATGGAGCCG+AGG + chr2_2:16973953-16973972 None:intergenic 50.0%
CGGCTCCATTTCTTCATGGT+TGG - chr2_2:16973953-16973972 Msa0241440:intron 50.0%
CTGGGATCCTCTTGATGTCA+AGG + chr2_2:16973987-16974006 None:intergenic 50.0%
GTCAAATAACGGCCATGACG+TGG + chr2_2:16974085-16974104 None:intergenic 50.0%
ACTGCATCAGCAATGTTCCG+TGG - chr2_2:16974103-16974122 Msa0241440:intron 50.0%
CCGTGGTAAGATGAGCACAA+AGG - chr2_2:16974120-16974139 Msa0241440:intron 50.0%
CGTGTGTGATATCCCACCAA+AGG - chr2_2:16974225-16974244 Msa0241440:CDS 50.0%
CCATCTTAAGGCCCTTTGGT+GGG + chr2_2:16974240-16974259 None:intergenic 50.0%
GATGCCATCTTAAGGCCCTT+TGG + chr2_2:16974244-16974263 None:intergenic 50.0%
CACAGCTATGTTTAGGCGCA+AGG - chr2_2:16974324-16974343 Msa0241440:CDS 50.0%
! TTGCATTGGTACACTGGCGA+GGG - chr2_2:16974352-16974371 Msa0241440:CDS 50.0%
GGACGAAATGGAGTTCACTG+AGG - chr2_2:16974378-16974397 Msa0241440:CDS 50.0%
TGCTGAGTACCAGCAATACC+AGG - chr2_2:16974426-16974445 Msa0241440:CDS 50.0%
CAGTTGCATCCTGGTATTGC+TGG + chr2_2:16974438-16974457 None:intergenic 50.0%
CGAAGAAGATTACGAGGAGG+AGG - chr2_2:16974462-16974481 Msa0241440:CDS 50.0%
TTACGAGGAGGAGGAAGAAG+AGG - chr2_2:16974471-16974490 Msa0241440:CDS 50.0%
! ATGGAAGGGGGTTAGTGGTG+GGG + chr2_2:16971371-16971390 None:intergenic 55.0%
AAAAGGAGGGAAGGAACGGG+TGG + chr2_2:16971426-16971445 None:intergenic 55.0%
ATTGTCCGCCTTGGATGTGG+AGG + chr2_2:16971510-16971529 None:intergenic 55.0%
CACATCCAAGGCGGACAATG+CGG - chr2_2:16971511-16971530 Msa0241440:three_prime_UTR 55.0%
ACATCCAAGGCGGACAATGC+GGG - chr2_2:16971512-16971531 Msa0241440:three_prime_UTR 55.0%
!! CCCAGAATTTGGCGCCGATT+TGG + chr2_2:16971540-16971559 None:intergenic 55.0%
TGGAACGTACCTTCCACCAC+TGG + chr2_2:16971659-16971678 None:intergenic 55.0%
CGTTCCACGCGCTGTTCTTA+TGG - chr2_2:16971672-16971691 Msa0241440:CDS 55.0%
TCCGTTAGATCCGGTCCGTT+TGG - chr2_2:16971718-16971737 Msa0241440:CDS 55.0%
GTATTCGGTCAGTCTGGTGC+TGG - chr2_2:16971766-16971785 Msa0241440:CDS 55.0%
CATTCATTGGGAGGTGGCAC+AGG - chr2_2:16972433-16972452 Msa0241440:intron 55.0%
AACCCACTTGAACCCTCCCA+CGG + chr2_2:16973650-16973669 None:intergenic 55.0%
! GGGAGGGTTCAAGTGGGTTT+AGG - chr2_2:16973651-16973670 Msa0241440:intron 55.0%
CCCTCGGCTCCATTTCTTCA+TGG - chr2_2:16973949-16973968 Msa0241440:intron 55.0%
! TGTGCTGCTGATCCACGTCA+TGG - chr2_2:16974070-16974089 Msa0241440:intron 55.0%
TGGTGGGATATCACACACGC+TGG + chr2_2:16974224-16974243 None:intergenic 55.0%
CCCACCAAAGGGCCTTAAGA+TGG - chr2_2:16974237-16974256 Msa0241440:CDS 55.0%
GCCATCTTAAGGCCCTTTGG+TGG + chr2_2:16974241-16974260 None:intergenic 55.0%
GGCGCAAGGCTTTCTTGCAT+TGG - chr2_2:16974338-16974357 Msa0241440:CDS 55.0%
! CTTGCATTGGTACACTGGCG+AGG - chr2_2:16974351-16974370 Msa0241440:CDS 55.0%
TTGGTACACTGGCGAGGGAA+TGG - chr2_2:16974357-16974376 Msa0241440:CDS 55.0%
TGGCGAGGGAATGGACGAAA+TGG - chr2_2:16974366-16974385 Msa0241440:CDS 55.0%
CTTCGTCAGCAGTTGCATCC+TGG + chr2_2:16974447-16974466 None:intergenic 55.0%
GAGGAGGAGGAAGAAGAGGA+GGG - chr2_2:16974475-16974494 Msa0241440:CDS 55.0%
!! GAAGAGGAGGGTGCTGCTTA+AGG - chr2_2:16974487-16974506 Msa0241440:CDS 55.0%
CGCATTGTCCGCCTTGGATG+TGG + chr2_2:16971513-16971532 None:intergenic 60.0%
TTGGGAGGTGGCACAGGTTC+AGG - chr2_2:16972439-16972458 Msa0241440:intron 60.0%
AGGTGGCACAGGTTCAGGCA+TGG - chr2_2:16972444-16972463 Msa0241440:intron 60.0%
GGTGGCACAGGTTCAGGCAT+GGG - chr2_2:16972445-16972464 Msa0241440:intron 60.0%
GACCGTGGGAGGGTTCAAGT+GGG - chr2_2:16973645-16973664 Msa0241440:intron 60.0%
CGAGGAGGAGGAAGAAGAGG+AGG - chr2_2:16974474-16974493 Msa0241440:CDS 60.0%
!! TGGCTTTGGCTTTGCGCGAG+TGG - chr2_2:16974554-16974573 Msa0241440:CDS 60.0%
! GAAGGGGGTTAGTGGTGGGG+AGG + chr2_2:16971368-16971387 None:intergenic 65.0%
GGTTCCCGCATTGTCCGCCT+TGG + chr2_2:16971519-16971538 None:intergenic 65.0%
GGACCGTGGGAGGGTTCAAG+TGG - chr2_2:16973644-16973663 Msa0241440:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 16971298 16974772 16971298 ID=Msa0241440;Name=Msa0241440
chr2_2 mRNA 16971298 16974772 16971298 ID=Msa0241440-mRNA-1;Parent=Msa0241440;Name=Msa0241440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=198|1|1|1|1|1|3|265|445
chr2_2 exon 16971298 16972236 16971298 ID=Msa0241440-mRNA-1:exon:7024;Parent=Msa0241440-mRNA-1
chr2_2 exon 16973382 16973651 16973382 ID=Msa0241440-mRNA-1:exon:7023;Parent=Msa0241440-mRNA-1
chr2_2 exon 16974181 16974772 16974181 ID=Msa0241440-mRNA-1:exon:7022;Parent=Msa0241440-mRNA-1
chr2_2 five_prime_UTR 16974575 16974772 16974575 ID=Msa0241440-mRNA-1:five_prime_utr;Parent=Msa0241440-mRNA-1
chr2_2 CDS 16974181 16974574 16974181 ID=Msa0241440-mRNA-1:cds;Parent=Msa0241440-mRNA-1
chr2_2 CDS 16973382 16973651 16973382 ID=Msa0241440-mRNA-1:cds;Parent=Msa0241440-mRNA-1
chr2_2 CDS 16971563 16972236 16971563 ID=Msa0241440-mRNA-1:cds;Parent=Msa0241440-mRNA-1
chr2_2 three_prime_UTR 16971298 16971562 16971298 ID=Msa0241440-mRNA-1:three_prime_utr;Parent=Msa0241440-mRNA-1
Gene Sequence

>Msa0241440

ATGAGAGAAATCCTCCACATCCAAGGCGGACAATGCGGGAACCAAATCGGCGCCAAATTCTGGGAAGTAATTTGCGACGAACACGGAATTGATCACACCGGAAAATACAACGGCGATTCCGAACTTCAACTTGAACGTATCAATGTCTATTACAATGAAGCCAGTGGTGGAAGGTACGTTCCACGCGCTGTTCTTATGGATCTTGAACCTGGTACTATGGATTCCGTTAGATCCGGTCCGTTTGGTCAGATCTTTCGTCCGGATAATTTTGTATTCGGTCAGTCTGGTGCTGGGAATAATTGGGCCAAAGGTCATTATACTGAAGGTGCTGAGCTTATTGATTCTGTTCTTGATGTTGTTCGTAAAGAAGCAGAGAATTGTGATTGCTTGCAAGGATTTCAAGTGTGTCATTCATTGGGAGGTGGCACAGGTTCAGGCATGGGAACGCTTTTGATATCGAAGATTCGAGAAGAATATCCGGATCGTATGATGTTGACGTTTTCGGTGTTTCCTTCACCCAAGGTGTCAGATACGGTTGTGGAACCGTATAATGCGACGCTTTCTGTTCATCAACTTGTTGAGAATGCAGATGAATGCATGGTGTTGGATAATGAAGCTCTTTATGATATATGCTTCAGGACTTTGAAGCTTGCTACGCCAACGTTTGGTGACCTTAACCACCTCATTTCTGCCACTATGAGTGGAGTTACTTGTTGTCTACGTTTCCCTGGACAGCTGAACTCTGATCTTCGTAAGCTTGCTGTCAATCTTATCCCATTCCCTCGGCTCCATTTCTTCATGGTTGGGTTTGCACCCTTGACATCAAGAGGATCCCAGCAATATCGTGCTTTGACTGTACCAGAATTGACTCAGCAGATGTGGGATGCAAAGAACATGATGTGTGCTGCTGATCCACGTCATGGCCGTTATTTGACTGCATCAGCAATGTTCCGTGGTAAGATGAGCACAAAGGAAGTAGATGAGCAGATGATCAATGTGCAAAACAAGAACTCTTCATACTTTGTTGAGTGGATACCGAATAATGTTAAGTCCAGCGTGTGTGATATCCCACCAAAGGGCCTTAAGATGGCATCGACTTTCATCGGTAATTCAACTTCAATCCAGGAGATGTTCAGGAGAGTTAGTGAGCAGTTCACAGCTATGTTTAGGCGCAAGGCTTTCTTGCATTGGTACACTGGCGAGGGAATGGACGAAATGGAGTTCACTGAGGCCGAGAGTAACATGAATGATCTTGTTGCTGAGTACCAGCAATACCAGGATGCAACTGCTGACGAAGAAGATTACGAGGAGGAGGAAGAAGAGGAGGGTGCTGCTTAA
Protein sequence

>Msa0241440

MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEDYEEEEEEEGAA*