AlfalfaGEDB | Msa0283630

M. sativa cultivar zhongmu-4 / Msa0283630

KEGG: K08790|K20069
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0283630	XP_039690476.1	88.384	198	15	1	1	198	151	340	2.50e-120	361

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0283630	sp\|Q9NBK5\|TRC_DROME	52.020	198	87	3	1	198	129	318	2.51e-60	198

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0283630	G7I4M5	88.384	198	15	1	1	198	151	340	1.20e-120	361

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0091590	Msa0283630	0.957232	4.462086e-115	-8.615850e-47
Msa0283630	Msa0333590	0.902735	7.150576e-79	-8.615850e-47
Msa0283630	Msa0546530	0.921078	5.673608e-88	-8.615850e-47
Msa0283630	Msa0731260	0.948084	1.899293e-106	-8.615850e-47
Msa0283630	Msa0751240	0.865277	6.638076e-65	-8.615850e-47
Msa0283630	Msa0771270	0.948927	3.561632e-107	-8.615850e-47
Msa0283630	Msa0811140	0.869826	2.313353e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0283630	MtrunA17_Chr1g0167311	88.384	198	15	1	1	198	151	340	2.30e-124	361
Msa0283630	MtrunA17_Chr1g0167351	81.818	198	28	1	1	198	146	335	2.77e-115	338
Msa0283630	MtrunA17_Chr1g0187581	74.242	198	42	2	1	198	153	341	2.38e-105	313
Msa0283630	MtrunA17_Chr1g0183651	73.232	198	43	3	1	198	156	343	1.03e-101	304
Msa0283630	MtrunA17_Chr7g0261491	73.737	198	42	3	1	198	156	343	3.68e-101	303
Msa0283630	MtrunA17_Chr2g0299781	62.927	205	61	4	1	198	149	345	3.64e-83	255
Msa0283630	MtrunA17_Chr3g0135951	61.307	199	74	3	1	198	130	326	2.13e-81	251
Msa0283630	MtrunA17_Chr1g0153321	61.111	198	69	3	1	198	144	333	1.36e-79	246
Msa0283630	MtrunA17_Chr6g0478601	38.000	200	101	4	1	198	147	325	6.25e-36	131
Msa0283630	MtrunA17_Chr4g0018201	39.604	202	94	5	1	198	795	972	8.88e-36	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0283630	AT4G14350.2	74.242	198	42	2	1	198	155	343	7.53e-104	310
Msa0283630	AT4G14350.1	74.242	198	42	2	1	198	155	343	7.53e-104	310
Msa0283630	AT4G14350.4	74.242	198	42	2	1	198	155	343	7.53e-104	310
Msa0283630	AT4G14350.3	74.242	198	42	2	1	198	155	343	8.24e-104	310
Msa0283630	AT3G23310.1	73.500	200	42	3	1	198	156	346	1.14e-101	305
Msa0283630	AT2G20470.3	68.182	198	52	2	1	198	160	346	9.30e-96	288
Msa0283630	AT2G20470.2	68.182	198	52	2	1	198	160	346	3.71e-95	288
Msa0283630	AT2G20470.1	68.182	198	52	2	1	198	160	346	3.71e-95	288
Msa0283630	AT1G03920.2	69.697	198	50	3	1	198	60	247	3.00e-93	280
Msa0283630	AT1G03920.1	69.697	198	50	3	1	198	173	360	2.28e-92	281

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Find 44 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTGCAGTAACCTTC+AGG	0.370471	2_3:-21034028	Msa0283630:CDS
AAATCAGAGATGCTTAGTAG+AGG	0.631650	2_3:-21034706	Msa0283630:exon
AACAGCAACTGGAGCATTCG+CGG	0.503673	2_3:-21033924	Msa0283630:CDS
AACGTCATCATATCTCCACC+GGG	0.657380	2_3:+21034485	None:intergenic
AACTTGCTTCTGGATAGAAA+TGG	0.545939	2_3:-21034111	Msa0283630:CDS
AAGCAAGTTCATCACTTTGA+AGG	0.415965	2_3:+21033968	None:intergenic
AGAGATGCTTAGTAGAGGAC+AGG	0.546069	2_3:-21034701	Msa0283630:intron
AGCATCTCTGATTTAACTCA+CGG	0.528343	2_3:+21034715	None:intergenic
ATAAACATAATTATATTCAT+AGG	0.369736	2_3:-21034382	Msa0283630:intron
ATAATGGAGTATCTACCCGG+TGG	0.717919	2_3:-21034500	Msa0283630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAATACTCGTCATCTTGAA+AGG	+	chr2_3:21033707-21033726	None:intergenic	30.0%
TGAAGCTAAATTCTATATCG+GGG	-	chr2_3:21033801-21033820	Msa0283630:intron	30.0%
CAGGAAAAAGACTTATCTAA+TGG	-	chr2_3:21034224-21034243	Msa0283630:intron	30.0%
TCTAATGGAGTTAACATAAG+TGG	-	chr2_3:21034239-21034258	Msa0283630:intron	30.0%
TAAATACTCGTCATCTTGAA+AGG	+	chr2_3:21033707-21033726	None:intergenic	30.0%
TGAAGCTAAATTCTATATCG+GGG	-	chr2_3:21033801-21033820	Msa0283630:intron	30.0%
CAGGAAAAAGACTTATCTAA+TGG	-	chr2_3:21034224-21034243	Msa0283630:intron	30.0%
TCTAATGGAGTTAACATAAG+TGG	-	chr2_3:21034239-21034258	Msa0283630:intron	30.0%
AGCATCTCTGATTTAACTCA+CGG	+	chr2_3:21033521-21033540	None:intergenic	35.0%
AAATCAGAGATGCTTAGTAG+AGG	-	chr2_3:21033527-21033546	Msa0283630:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	21033408	21034847	21033408	ID=Msa0283630;Name=Msa0283630
chr2_3	mRNA	21033408	21034847	21033408	ID=Msa0283630-mRNA-1;Parent=Msa0283630;Name=Msa0283630-mRNA-1;_AED=0.35;_eAED=0.35;_QI=128\|0.33\|0.25\|0.5\|1\|1\|4\|0\|202
chr2_3	exon	21033408	21033509	21033408	ID=Msa0283630-mRNA-1:exon:8301;Parent=Msa0283630-mRNA-1
chr2_3	exon	21033903	21034149	21033903	ID=Msa0283630-mRNA-1:exon:8300;Parent=Msa0283630-mRNA-1
chr2_3	exon	21034383	21034624	21034383	ID=Msa0283630-mRNA-1:exon:8299;Parent=Msa0283630-mRNA-1
chr2_3	exon	21034702	21034847	21034702	ID=Msa0283630-mRNA-1:exon:8298;Parent=Msa0283630-mRNA-1
chr2_3	five_prime_UTR	21034720	21034847	21034720	ID=Msa0283630-mRNA-1:five_prime_utr;Parent=Msa0283630-mRNA-1
chr2_3	CDS	21034702	21034719	21034702	ID=Msa0283630-mRNA-1:cds;Parent=Msa0283630-mRNA-1
chr2_3	CDS	21034383	21034624	21034383	ID=Msa0283630-mRNA-1:cds;Parent=Msa0283630-mRNA-1
chr2_3	CDS	21033903	21034149	21033903	ID=Msa0283630-mRNA-1:cds;Parent=Msa0283630-mRNA-1
chr2_3	CDS	21033408	21033509	21033408	ID=Msa0283630-mRNA-1:cds;Parent=Msa0283630-mRNA-1

Gene Sequence

>Msa0283630

ATGCTTAGTAGAGGACAGGTTGAATATATCAAATCTGAAAGGAACCTTCTTGCAGAAGTTGATAGCAATTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGACGAGTATTTATATCTCATAATGGAGTATCTACCCGGTGGAGATATGATGACGTTGCTGATGCGGAAAGAAGTACTGACTGAAGATGAAGCTAAATTCTATATCGGGGAGACTGTGCTAGCCATAGAGTCTATTCATAAACATAATTATATTCATAGAGATATCATGCCCGACAACTTGCTTCTGGATAGAAATGGTCACGTGAAATTATCAGATTTTGGATTATGTAAGCCGCTAGACTGCAGTAACCTTCAGGAAAAAGACTGCAGTAACCTTCAGGAAAAAGACTTATCTAATGGAGTTAACATAAGTGGAGTCCTTCAAAGTGATGAACTTGCTTTATCTCCTAACCAATCACAACAACAGCAACTGGAGCATTCGCGGAAAAATCGCAGCAGAATGCTGACCTATTCTACGGTTGGAACACTCGATTATATTGCTCCAGAAGTTATTCTGAAGAGAGGGTATAGCGTGGAATGTGATTGGTATAATAGTATATGGCGTTGA

Protein sequence

>Msa0283630

MLSRGQVEYIKSERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKEVLTEDEAKFYIGETVLAIESIHKHNYIHRDIMPDNLLLDRNGHVKLSDFGLCKPLDCSNLQEKDCSNLQEKDLSNGVNISGVLQSDELALSPNQSQQQQLEHSRKNRSRMLTYSTVGTLDYIAPEVILKRGYSVECDWYNSIWR*