AlfalfaGEDB | Msa0771270

M. sativa cultivar zhongmu-4 / Msa0771270

KEGG: K08790|K20069
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771270	XP_039690476.1	89.418	189	12	1	1	189	151	331	4.41e-115	347

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771270	sp\|Q7TSE6\|ST38L_MOUSE	50.785	191	75	4	1	189	126	299	4.35e-56	186

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771270	G7I4M5	89.418	189	12	1	1	189	151	331	2.11e-115	347

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0091590	Msa0771270	0.975302	1.050073e-139	-8.615850e-47
Msa0283630	Msa0771270	0.948927	3.561632e-107	-8.615850e-47
Msa0333590	Msa0771270	0.932794	4.986492e-95	-8.615850e-47
Msa0546530	Msa0771270	0.981078	1.013135e-151	-8.615850e-47
Msa0731260	Msa0771270	0.997836	3.130829e-250	-8.615850e-47
Msa0751240	Msa0771270	0.861336	1.101881e-63	-8.615850e-47
Msa0771270	Msa0811140	0.893276	7.307823e-75	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771270	MtrunA17_Chr1g0167311	89.418	189	12	1	1	189	151	331	4.05e-119	347
Msa0771270	MtrunA17_Chr1g0167351	83.069	189	24	1	1	189	146	326	2.30e-110	325
Msa0771270	MtrunA17_Chr1g0187581	75.132	189	38	2	1	189	153	332	2.42e-100	300
Msa0771270	MtrunA17_Chr1g0183651	74.074	189	39	3	1	189	156	334	1.03e-96	291
Msa0771270	MtrunA17_Chr7g0261491	74.603	189	38	3	1	189	156	334	5.26e-96	290
Msa0771270	MtrunA17_Chr2g0299781	61.500	200	62	4	1	193	149	340	3.59e-77	239
Msa0771270	MtrunA17_Chr3g0135951	61.579	190	70	3	1	189	130	317	3.81e-76	237
Msa0771270	MtrunA17_Chr1g0153321	61.376	189	65	3	1	189	144	324	5.50e-74	231
Msa0771270	MtrunA17_Chr6g0478601	38.860	193	95	4	1	191	147	318	2.37e-33	124
Msa0771270	MtrunA17_Chr4g0018201	40.201	199	89	6	1	193	795	969	7.15e-33	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771270	AT4G14350.3	75.132	189	38	2	1	189	155	334	1.35e-98	296
Msa0771270	AT4G14350.2	75.132	189	38	2	1	189	155	334	1.42e-98	296
Msa0771270	AT4G14350.1	75.132	189	38	2	1	189	155	334	1.42e-98	296
Msa0771270	AT4G14350.4	75.132	189	38	2	1	189	155	334	1.42e-98	296
Msa0771270	AT3G23310.1	74.346	191	38	3	1	189	156	337	1.78e-96	291
Msa0771270	AT2G20470.3	68.783	189	48	2	1	189	160	337	1.47e-90	275
Msa0771270	AT2G20470.2	68.783	189	48	2	1	189	160	337	5.74e-90	274
Msa0771270	AT2G20470.1	68.783	189	48	2	1	189	160	337	5.74e-90	274
Msa0771270	AT1G03920.2	70.370	189	46	3	1	189	60	238	4.49e-88	266
Msa0771270	AT1G03920.1	70.370	189	46	3	1	189	173	351	2.66e-87	267

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Find 41 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTGCAGTAACCTTC+AGG	0.370471	5_2:-43550008	Msa0771270:CDS
AAATCAGAGATGCTTAGTAG+AGG	0.631650	5_2:-43550686	Msa0771270:exon
AACAGCAACTGGAGCATTCG+CGG	0.503673	5_2:-43549904	Msa0771270:CDS
AACGTCATCATATCTCCACC+GGG	0.657380	5_2:+43550465	None:intergenic
AACTTGCTTCTGGATAGAAA+TGG	0.545939	5_2:-43550091	Msa0771270:CDS
AAGCAAGTTCATCACTTTGA+AGG	0.415965	5_2:+43549948	None:intergenic
AGAGATGCTTAGTAGAGGAC+AGG	0.546069	5_2:-43550681	Msa0771270:intron
AGCATCTCTGATTTAACTCA+CGG	0.528343	5_2:+43550695	None:intergenic
ATAAACATAATTATATTCAT+AGG	0.369736	5_2:-43550362	Msa0771270:intron
ATAATGGAGTATCTACCCGG+TGG	0.717919	5_2:-43550480	Msa0771270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAATACTCGTCATCTTGAA+AGG	+	chr5_2:43549618-43549637	None:intergenic	30.0%
TGAAGCTAAATTCTATATCG+GGG	-	chr5_2:43549712-43549731	Msa0771270:intron	30.0%
CAGGAAAAAGACTTATCTAA+TGG	-	chr5_2:43550135-43550154	Msa0771270:intron	30.0%
TCTAATGGAGTTAACATAAG+TGG	-	chr5_2:43550150-43550169	Msa0771270:intron	30.0%
GAATAAGTGAATAACTTCTC+AGG	-	chr5_2:43550784-43550803	Msa0771270:five_prime_UTR	30.0%
TAAATACTCGTCATCTTGAA+AGG	+	chr5_2:43549618-43549637	None:intergenic	30.0%
TGAAGCTAAATTCTATATCG+GGG	-	chr5_2:43549712-43549731	Msa0771270:intron	30.0%
CAGGAAAAAGACTTATCTAA+TGG	-	chr5_2:43550135-43550154	Msa0771270:intron	30.0%
TCTAATGGAGTTAACATAAG+TGG	-	chr5_2:43550150-43550169	Msa0771270:intron	30.0%
GAATAAGTGAATAACTTCTC+AGG	-	chr5_2:43550784-43550803	Msa0771270:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	43549319	43550827	43549319	ID=Msa0771270;Name=Msa0771270
chr5_2	mRNA	43549319	43550827	43549319	ID=Msa0771270-mRNA-1;Parent=Msa0771270;Name=Msa0771270-mRNA-1;_AED=0.35;_eAED=0.35;_QI=128\|0.25\|0.2\|0.4\|1\|1\|5\|0\|195
chr5_2	exon	43549319	43549340	43549319	ID=Msa0771270-mRNA-1:exon:13421;Parent=Msa0771270-mRNA-1
chr5_2	exon	43549431	43549489	43549431	ID=Msa0771270-mRNA-1:exon:13420;Parent=Msa0771270-mRNA-1
chr5_2	exon	43549883	43550129	43549883	ID=Msa0771270-mRNA-1:exon:13419;Parent=Msa0771270-mRNA-1
chr5_2	exon	43550363	43550604	43550363	ID=Msa0771270-mRNA-1:exon:13418;Parent=Msa0771270-mRNA-1
chr5_2	exon	43550682	43550827	43550682	ID=Msa0771270-mRNA-1:exon:13417;Parent=Msa0771270-mRNA-1
chr5_2	five_prime_UTR	43550700	43550827	43550700	ID=Msa0771270-mRNA-1:five_prime_utr;Parent=Msa0771270-mRNA-1
chr5_2	CDS	43550682	43550699	43550682	ID=Msa0771270-mRNA-1:cds;Parent=Msa0771270-mRNA-1
chr5_2	CDS	43550363	43550604	43550363	ID=Msa0771270-mRNA-1:cds;Parent=Msa0771270-mRNA-1
chr5_2	CDS	43549883	43550129	43549883	ID=Msa0771270-mRNA-1:cds;Parent=Msa0771270-mRNA-1
chr5_2	CDS	43549431	43549489	43549431	ID=Msa0771270-mRNA-1:cds;Parent=Msa0771270-mRNA-1
chr5_2	CDS	43549319	43549340	43549319	ID=Msa0771270-mRNA-1:cds;Parent=Msa0771270-mRNA-1

Gene Sequence

>Msa0771270

ATGCTTAGTAGAGGACAGGTTGAATATATCAAATCTGAAAGGAACCTTCTTGCAGAAGTTGATAGCAATTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGACGAGTATTTATATCTCATAATGGAGTATCTACCCGGTGGAGATATGATGACGTTGCTGATGCGGAAAGAAGTACTGACTGAAGATGAAGCTAAATTCTATATCGGGGAGACTGTGCTAGCCATAGAGTCTATTCATAAACATAATTATATTCATAGAGATATCATGCCCGACAACTTGCTTCTGGATAGAAATGGTCACGTGAAATTATCAGATTTTGGATTATGTAAGCCGCTAGACTGCAGTAACCTTCAGGAAAAAGACTGCAGTAACCTTCAGGAAAAAGACTTATCTAATGGAGTTAACATAAGTGGAGTCCTTCAAAGTGATGAACTTGCTTTATCTCCTAACCAATCACAACAACAGCAACTGGAGCATTCGCGGAAAAATCGCAGCAGAATGCTGACCTATTCTACGGTTGGAACACTCGATTATATTGCTCCAGAAGTTATTCTGAAGAGAGGGTCTGCTGCTGATAATCTCTAA

Protein sequence

>Msa0771270

MLSRGQVEYIKSERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKEVLTEDEAKFYIGETVLAIESIHKHNYIHRDIMPDNLLLDRNGHVKLSDFGLCKPLDCSNLQEKDCSNLQEKDLSNGVNISGVLQSDELALSPNQSQQQQLEHSRKNRSRMLTYSTVGTLDYIAPEVILKRGSAADNL*