Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285900 | XP_024631349.1 | 80.110 | 181 | 1 | 1 | 1 | 146 | 1 | 181 | 2.33e-93 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285900 | sp|Q94BU8|GSDA_ARATH | 64.444 | 180 | 29 | 1 | 2 | 146 | 6 | 185 | 2.81e-76 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285900 | B7FGY2 | 80.110 | 181 | 1 | 1 | 1 | 146 | 1 | 181 | 1.11e-93 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204150 | Msa0285900 | 0.929134 | 1.074098e-92 | -8.615850e-47 |
| Msa0285900 | Msa0324820 | 0.966998 | 1.123920e-126 | -8.615850e-47 |
| Msa0285900 | Msa1158620 | 0.804083 | 2.561221e-49 | -8.615850e-47 |
| Msa0285900 | Msa1405510 | 0.968936 | 2.161791e-129 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285900 | MtrunA17_Chr2g0302351 | 79.558 | 181 | 2 | 1 | 1 | 146 | 5 | 185 | 7.70e-97 | 276 |
| Msa0285900 | MtrunA17_Chr4g0069501 | 69.061 | 181 | 21 | 1 | 1 | 146 | 6 | 186 | 1.82e-83 | 243 |
| Msa0285900 | MtrunA17_Chr1g0191001 | 59.748 | 159 | 29 | 1 | 23 | 146 | 11 | 169 | 6.80e-58 | 177 |
| Msa0285900 | MtrunA17_Chr1g0190991 | 46.835 | 158 | 43 | 3 | 22 | 144 | 24 | 175 | 1.40e-37 | 126 |
| Msa0285900 | MtrunA17_Chr1g0190971 | 46.497 | 157 | 42 | 4 | 23 | 143 | 12 | 162 | 2.98e-34 | 117 |
| Msa0285900 | MtrunA17_Chr3g0077671 | 44.371 | 151 | 39 | 3 | 15 | 143 | 69 | 196 | 4.67e-29 | 107 |
| Msa0285900 | MtrunA17_Chr1g0190981 | 66.129 | 62 | 15 | 1 | 23 | 84 | 18 | 73 | 1.21e-22 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285900 | AT5G28050.1 | 64.444 | 180 | 29 | 1 | 2 | 146 | 6 | 185 | 2.86e-77 | 227 |
| Msa0285900 | AT5G28050.2 | 63.889 | 180 | 30 | 1 | 2 | 146 | 25 | 204 | 9.77e-77 | 227 |
| Msa0285900 | AT5G28050.3 | 64.444 | 180 | 29 | 1 | 2 | 146 | 111 | 290 | 1.38e-76 | 229 |
| Msa0285900 | AT3G05300.1 | 39.130 | 115 | 32 | 2 | 66 | 145 | 1 | 112 | 3.54e-17 | 72.8 |
Find 34 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACATTCTACACCTTTAT+AGG | 0.164004 | 2_3:-25984632 | None:intergenic |
| TTTATGTAGAGGTTGGTTTA+TGG | 0.196375 | 2_3:+25985315 | Msa0285900:intron |
| AAACACTTCTTCAGCAATTA+TGG | 0.210407 | 2_3:-25985457 | None:intergenic |
| TATTGTGTTATTAGCTATAA+AGG | 0.266607 | 2_3:+25984570 | Msa0285900:intron |
| TTGTTTGTGGAGGATCAAAA+TGG | 0.374746 | 2_3:+25985611 | Msa0285900:three_prime_UTR |
| GCTGAGGCAGCAATTGCAAT+TGG | 0.405341 | 2_3:+25985345 | Msa0285900:CDS |
| AATATTTGAATCATAGAAGT+TGG | 0.414352 | 2_3:+25985730 | Msa0285900:three_prime_UTR |
| GCAGTTGAAGAAGCCTATAA+AGG | 0.442236 | 2_3:+25984619 | Msa0285900:CDS |
| GTTGTCACAACATGGTTCTA+AGG | 0.442612 | 2_3:+25984707 | Msa0285900:CDS |
| GCTGATGCATTACGAGGAAC+TGG | 0.446579 | 2_3:+25985384 | Msa0285900:CDS |
| TATATACTTGTATTCACATA+AGG | 0.466768 | 2_3:+25981704 | None:intergenic |
| TGTGAAGATGGAGGTCCATT+TGG | 0.477425 | 2_3:+25984649 | Msa0285900:CDS |
| AGAGTTAATCACAATGACTT+AGG | 0.491851 | 2_3:-25985528 | None:intergenic |
| ATATTTGAATCATAGAAGTT+GGG | 0.495533 | 2_3:+25985731 | Msa0285900:three_prime_UTR |
| AACTCTTATTGATATAGAAA+AGG | 0.500839 | 2_3:-25985754 | None:intergenic |
| AAAACTATAACAGCACCAAA+TGG | 0.503753 | 2_3:-25984664 | None:intergenic |
| GTGACTTCAGCATGAGCAGA+AGG | 0.538349 | 2_3:-25984739 | None:intergenic |
| CTTCCTAGTGGTGCAAAACA+AGG | 0.541378 | 2_3:+25982171 | Msa0285900:intron |
| AAAGGTGTAGAATGTGAAGA+TGG | 0.546002 | 2_3:+25984637 | Msa0285900:CDS |
| TCTCATAGAAGTATTGTTTG+TGG | 0.550760 | 2_3:+25985598 | Msa0285900:three_prime_UTR |
| TTGGAGATTAAAAGAGCTGA+TGG | 0.558816 | 2_3:+25985426 | Msa0285900:CDS |
| CTAGTGGTGCAAAACAAGGA+TGG | 0.573459 | 2_3:+25982175 | Msa0285900:intron |
| TATTAGAAATATACAATACA+AGG | 0.575825 | 2_3:-25985677 | None:intergenic |
| TATTGCTAGTTGTCACAACA+TGG | 0.593501 | 2_3:+25984699 | Msa0285900:CDS |
| TACTTCTATGAGACACATGA+TGG | 0.594487 | 2_3:-25985588 | None:intergenic |
| CATAGAAGTATTGTTTGTGG+AGG | 0.597271 | 2_3:+25985601 | Msa0285900:three_prime_UTR |
| TTTATAGCTGATGCATTACG+AGG | 0.630911 | 2_3:+25985378 | Msa0285900:CDS |
| AGAAGTGTTTGAGAAAACAA+AGG | 0.641403 | 2_3:+25985470 | Msa0285900:CDS |
| TAAAAGAGCTGATGGCAATG+AGG | 0.644473 | 2_3:+25985434 | Msa0285900:CDS |
| TGACTTCAGCATGAGCAGAA+GGG | 0.653823 | 2_3:-25984738 | None:intergenic |
| GGTGTAGAATGTGAAGATGG+AGG | 0.657918 | 2_3:+25984640 | Msa0285900:CDS |
| GAGAAACAATACCTTGCTTG+TGG | 0.666329 | 2_3:-25982228 | None:intergenic |
| GGTTTATGGAGCAAAAGCTG+AGG | 0.686000 | 2_3:+25985329 | Msa0285900:CDS |
| TGAAGTCACAGCAATAAGAG+AGG | 0.698117 | 2_3:+25984753 | Msa0285900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTAAACTGATTATTA+TGG | + | chr2_3:25982112-25982131 | Msa0285900:intron | 10.0% |
| !!! | ATGTTTTTTTTTTTTTTTGT+TGG | - | chr2_3:25984399-25984418 | None:intergenic | 10.0% |
| !!! | TTATTTCTTTTAGTTAATAT+TGG | + | chr2_3:25984860-25984879 | Msa0285900:intron | 10.0% |
| !! | AACTATTCAACATTTAATAT+TGG | - | chr2_3:25981944-25981963 | None:intergenic | 15.0% |
| !!! | TTGAGAAACAATTTTTTATA+GGG | - | chr2_3:25982749-25982768 | None:intergenic | 15.0% |
| !! | TTATGAATATCAGTATATTA+TGG | + | chr2_3:25982773-25982792 | Msa0285900:intron | 15.0% |
| !! | AAGTACAATTGATAAATAAA+TGG | + | chr2_3:25982830-25982849 | Msa0285900:intron | 15.0% |
| !!! | ATTTCTTTTTAACATACTTT+TGG | + | chr2_3:25985261-25985280 | Msa0285900:intron | 15.0% |
| !!! | TAGTATTATTTTTTATGTAG+AGG | + | chr2_3:25985304-25985323 | Msa0285900:intron | 15.0% |
| !! | TATTAGAAATATACAATACA+AGG | - | chr2_3:25985680-25985699 | None:intergenic | 15.0% |
| !!! | AATAGCATGTTTAATTTTTA+AGG | + | chr2_3:25985696-25985715 | Msa0285900:three_prime_UTR | 15.0% |
| !! | TAAGAACAAATAAGAAAGAA+TGG | - | chr2_3:25982674-25982693 | None:intergenic | 20.0% |
| !!! | GTTGAGAAACAATTTTTTAT+AGG | - | chr2_3:25982750-25982769 | None:intergenic | 20.0% |
| !!! | TTAAACCATTTCTTTTTTGA+AGG | - | chr2_3:25982871-25982890 | None:intergenic | 20.0% |
| !!! | AATATCTTATTTTTATGCGA+GGG | + | chr2_3:25982934-25982953 | Msa0285900:intron | 20.0% |
| !! | TAACTCATAAGAAGATAAAA+TGG | + | chr2_3:25983418-25983437 | Msa0285900:intron | 20.0% |
| !! | AACTCATAAGAAGATAAAAT+GGG | + | chr2_3:25983419-25983438 | Msa0285900:intron | 20.0% |
| !!! | ATCAATTGGTTTTGAAAAAA+TGG | + | chr2_3:25983470-25983489 | Msa0285900:intron | 20.0% |
| !!! | TCAATTGGTTTTGAAAAAAT+GGG | + | chr2_3:25983471-25983490 | Msa0285900:intron | 20.0% |
| !!! | TATTTTTTAGAGTTGCATTT+TGG | + | chr2_3:25983657-25983676 | Msa0285900:intron | 20.0% |
| !!! | ATTTTTTAGAGTTGCATTTT+GGG | + | chr2_3:25983658-25983677 | Msa0285900:intron | 20.0% |
| !!! | ATTGCAATTATTTTCAATCA+TGG | - | chr2_3:25984242-25984261 | None:intergenic | 20.0% |
| !!! | CGTTACACAATAATAAATTT+TGG | - | chr2_3:25984492-25984511 | None:intergenic | 20.0% |
| !!! | TTGAAATGATATTTTCATCT+GGG | + | chr2_3:25984534-25984553 | Msa0285900:intron | 20.0% |
| !!! | TATTGTGTTATTAGCTATAA+AGG | + | chr2_3:25984570-25984589 | Msa0285900:intron | 20.0% |
| !!! | CTGCTTTTCTTAAAAATTTA+TGG | - | chr2_3:25984603-25984622 | None:intergenic | 20.0% |
| !! | AAAAAAAATGCATAGGAATT+TGG | - | chr2_3:25985066-25985085 | None:intergenic | 20.0% |
| !!! | ATTATTTTTTATGTAGAGGT+TGG | + | chr2_3:25985308-25985327 | Msa0285900:intron | 20.0% |
| !! | AATATTTGAATCATAGAAGT+TGG | + | chr2_3:25985730-25985749 | Msa0285900:three_prime_UTR | 20.0% |
| !! | ATATTTGAATCATAGAAGTT+GGG | + | chr2_3:25985731-25985750 | Msa0285900:three_prime_UTR | 20.0% |
| !! | AACTCTTATTGATATAGAAA+AGG | - | chr2_3:25985757-25985776 | None:intergenic | 20.0% |
| ! | ATTGACATCAACTTTAGTTA+TGG | + | chr2_3:25981819-25981838 | Msa0285900:intron | 25.0% |
| !! | AAAAAAATCAGCTTTAGTCA+TGG | + | chr2_3:25981876-25981895 | Msa0285900:intron | 25.0% |
| ! | AGTTAATGTAGTACTATGTA+TGG | + | chr2_3:25981960-25981979 | Msa0285900:intron | 25.0% |
| !!! | TTTATTTTTGATCTTCCTAG+TGG | + | chr2_3:25982159-25982178 | Msa0285900:intron | 25.0% |
| ! | TCAAAAAACTTTCTTTCCTA+TGG | - | chr2_3:25982370-25982389 | None:intergenic | 25.0% |
| !! | TCTACTTTCTTCTCAATTTT+GGG | - | chr2_3:25982477-25982496 | None:intergenic | 25.0% |
| !!! | TGCGAATATAATTTGCTATA+TGG | + | chr2_3:25982621-25982640 | Msa0285900:intron | 25.0% |
| ! | TTCTTCCTTCAAAAAAGAAA+TGG | + | chr2_3:25982863-25982882 | Msa0285900:intron | 25.0% |
| !!! | GAATATCTTATTTTTATGCG+AGG | + | chr2_3:25982933-25982952 | Msa0285900:intron | 25.0% |
| !!! | GAAAGTTAGTTTTTAACCAT+TGG | + | chr2_3:25983247-25983266 | Msa0285900:intron | 25.0% |
| ! | ATCTTCTTATGAGTTAAACA+TGG | - | chr2_3:25983414-25983433 | None:intergenic | 25.0% |
| !!! | TTTTTTAGAGTTGCATTTTG+GGG | + | chr2_3:25983659-25983678 | Msa0285900:intron | 25.0% |
| ! | GTTATTATTGATAGAGAAAC+TGG | + | chr2_3:25983835-25983854 | Msa0285900:intron | 25.0% |
| !! | TTATGGATTTTGTGACTATA+AGG | + | chr2_3:25983869-25983888 | Msa0285900:intron | 25.0% |
| !!! | GAAAGTTAGTTTTTAACCAT+TGG | - | chr2_3:25983247-25983266 | None:intergenic | 25.0% |
| ! | TAAAAACTAACTTTCCCATA+TGG | + | chr2_3:25984165-25984184 | Msa0285900:intron | 25.0% |
| ! | ATAACTATAATAGTAGCTCT+AGG | + | chr2_3:25984272-25984291 | Msa0285900:intron | 25.0% |
| ! | TATAGTGTATGTTTCAATTG+AGG | + | chr2_3:25984296-25984315 | Msa0285900:intron | 25.0% |
| !! | TTTAGAGTTCAACAAAATCA+CGG | - | chr2_3:25984346-25984365 | None:intergenic | 25.0% |
| ! | TCGTTCGATCTTAAATTAAT+CGG | - | chr2_3:25984469-25984488 | None:intergenic | 25.0% |
| !! | CTTGAAATGATATTTTCATC+TGG | + | chr2_3:25984533-25984552 | Msa0285900:intron | 25.0% |
| !!! | ACATAATGCTATCATTTTTC+AGG | + | chr2_3:25984926-25984945 | Msa0285900:intron | 25.0% |
| !!! | TCCTATGCATTTTTTTTTCT+TGG | + | chr2_3:25985069-25985088 | Msa0285900:intron | 25.0% |
| ! | ACCAAGAAAAAAAAATGCAT+AGG | - | chr2_3:25985073-25985092 | None:intergenic | 25.0% |
| !!! | TTCTTGGTTGATAGATTAAA+TGG | + | chr2_3:25985085-25985104 | Msa0285900:intron | 25.0% |
| ! | TTTATATGTGTGTGTTATGA+TGG | - | chr2_3:25985116-25985135 | None:intergenic | 25.0% |
| ! | ACAAAAATGCCAAAATTGTT+AGG | - | chr2_3:25985167-25985186 | None:intergenic | 25.0% |
| !!! | ATTTTATCAGAAAGCACAAT+TGG | + | chr2_3:25985407-25985426 | Msa0285900:CDS | 25.0% |
| !!! | AGCATGTTTAATTTTTAAGG+AGG | + | chr2_3:25985699-25985718 | Msa0285900:three_prime_UTR | 25.0% |
| AAAAGAGTAAGTGATCGAAT+TGG | + | chr2_3:25981757-25981776 | Msa0285900:intron | 30.0% | |
| TTAGTCATGGAAGAAATTAG+TGG | + | chr2_3:25981889-25981908 | Msa0285900:intron | 30.0% | |
| !!! | GAACATATTTTTTACACCGT+CGG | - | chr2_3:25982001-25982020 | None:intergenic | 30.0% |
| GATGAAAGAAAGAGTGAAAT+TGG | - | chr2_3:25982274-25982293 | None:intergenic | 30.0% | |
| CTTTCATCATCACATTATGT+AGG | + | chr2_3:25982286-25982305 | Msa0285900:intron | 30.0% | |
| !!! | AAGGAAAGATTGCTTTTTTG+TGG | + | chr2_3:25982428-25982447 | Msa0285900:intron | 30.0% |
| !!! | AGGAAAGATTGCTTTTTTGT+GGG | + | chr2_3:25982429-25982448 | Msa0285900:intron | 30.0% |
| ! | CTCTACTTTCTTCTCAATTT+TGG | - | chr2_3:25982478-25982497 | None:intergenic | 30.0% |
| GAGATGATTGTATGATTGTT+TGG | - | chr2_3:25983025-25983044 | None:intergenic | 30.0% | |
| GTTAAAAACTAACTTTCCCA+TGG | - | chr2_3:25984163-25984182 | None:intergenic | 30.0% | |
| GGAGAAAAATCTAATGTTGA+GGG | - | chr2_3:25983303-25983322 | None:intergenic | 30.0% | |
| TGGAGAAAAATCTAATGTTG+AGG | - | chr2_3:25983304-25983323 | None:intergenic | 30.0% | |
| TTCTTATGAGTTAAACATGG+TGG | - | chr2_3:25983411-25983430 | None:intergenic | 30.0% | |
| TAGCTTAGACTTTGATCAAT+TGG | + | chr2_3:25983456-25983475 | Msa0285900:intron | 30.0% | |
| CAGAGACAGTGATATATATA+AGG | - | chr2_3:25983516-25983535 | None:intergenic | 30.0% | |
| TCAAGTCATGAAGTTGAATA+TGG | + | chr2_3:25983556-25983575 | Msa0285900:intron | 30.0% | |
| AGTTGAATATGGATTTAGAG+TGG | + | chr2_3:25983567-25983586 | Msa0285900:intron | 30.0% | |
| ! | GTTGAATATGGATTTAGAGT+GGG | + | chr2_3:25983568-25983587 | Msa0285900:intron | 30.0% |
| AAAAAAACCAACCCAAGAAT+TGG | - | chr2_3:25983627-25983646 | None:intergenic | 30.0% | |
| !!! | ATTTTGGGGTTTTGTTTTCA+AGG | + | chr2_3:25983673-25983692 | Msa0285900:intron | 30.0% |
| GAATAAATGAATAAACCAGC+TGG | - | chr2_3:25983787-25983806 | None:intergenic | 30.0% | |
| ! | TCACAAAATCCATAACCTTT+TGG | - | chr2_3:25983864-25983883 | None:intergenic | 30.0% |
| TATGTTGTGGTTTCTTCATA+TGG | + | chr2_3:25983967-25983986 | Msa0285900:intron | 30.0% | |
| TTTAACCATTGGATCAAGTA+GGG | - | chr2_3:25984149-25984168 | None:intergenic | 30.0% | |
| ! | TTTTAACCATTGGATCAAGT+AGG | - | chr2_3:25983257-25983276 | None:intergenic | 30.0% |
| TTCACATTCTACACCTTTAT+AGG | - | chr2_3:25984635-25984654 | None:intergenic | 30.0% | |
| AAAACTATAACAGCACCAAA+TGG | - | chr2_3:25984667-25984686 | None:intergenic | 30.0% | |
| !! | TTTATGTAGAGGTTGGTTTA+TGG | + | chr2_3:25985315-25985334 | Msa0285900:intron | 30.0% |
| AAACACTTCTTCAGCAATTA+TGG | - | chr2_3:25985460-25985479 | None:intergenic | 30.0% | |
| !! | AGAAGTGTTTGAGAAAACAA+AGG | + | chr2_3:25985470-25985489 | Msa0285900:CDS | 30.0% |
| AGAGTTAATCACAATGACTT+AGG | - | chr2_3:25985531-25985550 | None:intergenic | 30.0% | |
| !! | TCTCATAGAAGTATTGTTTG+TGG | + | chr2_3:25985598-25985617 | Msa0285900:three_prime_UTR | 30.0% |
| ATCATCACATTATGTAGGCT+TGG | + | chr2_3:25982291-25982310 | Msa0285900:intron | 35.0% | |
| ACATTATGTAGGCTTGGAAA+CGG | + | chr2_3:25982297-25982316 | Msa0285900:intron | 35.0% | |
| TGGTACCAAACAATACCTAA+AGG | - | chr2_3:25982324-25982343 | None:intergenic | 35.0% | |
| ATCTTATTGGAACCAAACAG+GGG | - | chr2_3:25982404-25982423 | None:intergenic | 35.0% | |
| CATCTTATTGGAACCAAACA+GGG | - | chr2_3:25982405-25982424 | None:intergenic | 35.0% | |
| TCATCTTATTGGAACCAAAC+AGG | - | chr2_3:25982406-25982425 | None:intergenic | 35.0% | |
| ! | TGTTTGGTTCCAATAAGATG+AGG | + | chr2_3:25982405-25982424 | Msa0285900:intron | 35.0% |
| TCTTTCCTTCCTCATCTTAT+TGG | - | chr2_3:25982417-25982436 | None:intergenic | 35.0% | |
| ! | ACTTTCTTCTCAATTTTGGG+CGG | - | chr2_3:25982474-25982493 | None:intergenic | 35.0% |
| ATTGAGAAGAAAGTAGAGAG+AGG | + | chr2_3:25982480-25982499 | Msa0285900:intron | 35.0% | |
| TTGAGAAGAAAGTAGAGAGA+GGG | + | chr2_3:25982481-25982500 | Msa0285900:intron | 35.0% | |
| GAAAGTGAAAAGAAAGTGAG+AGG | - | chr2_3:25982995-25983014 | None:intergenic | 35.0% | |
| GTATGAGGAAAGAATGTTGA+AGG | - | chr2_3:25983079-25983098 | None:intergenic | 35.0% | |
| AGGTAAGGAAAGATAGTATG+AGG | - | chr2_3:25983094-25983113 | None:intergenic | 35.0% | |
| TGTTTGGATCACAAGAGAAA+AGG | - | chr2_3:25983114-25983133 | None:intergenic | 35.0% | |
| ! | AAGCACTAAAGTCCTTGTTT+AGG | + | chr2_3:25983170-25983189 | Msa0285900:intron | 35.0% |
| ATCTTAGTGAAGCCTAAACA+AGG | - | chr2_3:25983185-25983204 | None:intergenic | 35.0% | |
| TTGTTTAGGCTTCACTAAGA+TGG | + | chr2_3:25983184-25983203 | Msa0285900:intron | 35.0% | |
| AAAACTAACTTTCCCATGGT+GGG | - | chr2_3:25983240-25983259 | None:intergenic | 35.0% | |
| AAAAACTAACTTTCCCATGG+TGG | - | chr2_3:25983241-25983260 | None:intergenic | 35.0% | |
| ! | GTGTTTTTCACTTGATCCAA+TGG | - | chr2_3:25983266-25983285 | None:intergenic | 35.0% |
| ATGATTCTGTTTGGAAAGAG+AGG | - | chr2_3:25983380-25983399 | None:intergenic | 35.0% | |
| GTGGTAGTTATGATTCTGTT+TGG | - | chr2_3:25983389-25983408 | None:intergenic | 35.0% | |
| TTATGAGTTAAACATGGTGG+TGG | - | chr2_3:25983408-25983427 | None:intergenic | 35.0% | |
| AGATTCGAGTCATTTGATGT+TGG | + | chr2_3:25983599-25983618 | Msa0285900:intron | 35.0% | |
| TTGATGTTGGATCCAATTCT+TGG | + | chr2_3:25983612-25983631 | Msa0285900:intron | 35.0% | |
| TGATGTTGGATCCAATTCTT+GGG | + | chr2_3:25983613-25983632 | Msa0285900:intron | 35.0% | |
| TTCAAGGATGTTGAAGATGA+TGG | + | chr2_3:25983689-25983708 | Msa0285900:intron | 35.0% | |
| TTCAATAATCATGTGTGCTC+TGG | + | chr2_3:25983738-25983757 | Msa0285900:intron | 35.0% | |
| TAGAGAAACTGGAAACCAAA+AGG | + | chr2_3:25983846-25983865 | Msa0285900:intron | 35.0% | |
| AACTGGAAACCAAAAGGTTA+TGG | + | chr2_3:25983852-25983871 | Msa0285900:intron | 35.0% | |
| GCTTACTTCAATAGAGTTTG+TGG | - | chr2_3:25983941-25983960 | None:intergenic | 35.0% | |
| ! | AGTAAGCATCGTATATGTTG+TGG | + | chr2_3:25983954-25983973 | Msa0285900:intron | 35.0% |
| TTTCTTCATATGGAAGCTGA+TGG | + | chr2_3:25983977-25983996 | Msa0285900:intron | 35.0% | |
| AAACTAACTTTCCCATATGG+TGG | + | chr2_3:25984168-25984187 | Msa0285900:intron | 35.0% | |
| AACTAACTTTCCCATATGGT+GGG | + | chr2_3:25984169-25984188 | Msa0285900:intron | 35.0% | |
| ! | GCTAATTTTTCCCACCATAT+GGG | - | chr2_3:25984182-25984201 | None:intergenic | 35.0% |
| TGACCTCAAATTAACAGTTG+AGG | - | chr2_3:25984431-25984450 | None:intergenic | 35.0% | |
| CGCATATACATGTAGACATT+AGG | + | chr2_3:25984510-25984529 | Msa0285900:intron | 35.0% | |
| ! | AAAGGTGTAGAATGTGAAGA+TGG | + | chr2_3:25984637-25984656 | Msa0285900:CDS | 35.0% |
| TATTGCTAGTTGTCACAACA+TGG | + | chr2_3:25984699-25984718 | Msa0285900:CDS | 35.0% | |
| AGAGAGGTTGGATTATAAAC+AGG | + | chr2_3:25984769-25984788 | Msa0285900:intron | 35.0% | |
| TTACAACCTTAACACGTGAA+AGG | - | chr2_3:25985040-25985059 | None:intergenic | 35.0% | |
| TTTATAGCTGATGCATTACG+AGG | + | chr2_3:25985378-25985397 | Msa0285900:CDS | 35.0% | |
| TTGGAGATTAAAAGAGCTGA+TGG | + | chr2_3:25985426-25985445 | Msa0285900:CDS | 35.0% | |
| TACTTCTATGAGACACATGA+TGG | - | chr2_3:25985591-25985610 | None:intergenic | 35.0% | |
| !! | CATAGAAGTATTGTTTGTGG+AGG | + | chr2_3:25985601-25985620 | Msa0285900:three_prime_UTR | 35.0% |
| TTGTTTGTGGAGGATCAAAA+TGG | + | chr2_3:25985611-25985630 | Msa0285900:three_prime_UTR | 35.0% | |
| GAGAAACAATACCTTGCTTG+TGG | - | chr2_3:25982231-25982250 | None:intergenic | 40.0% | |
| ! | ACGGTCCTTTAGGTATTGTT+TGG | + | chr2_3:25982316-25982335 | Msa0285900:intron | 40.0% |
| ! | TTGTTTGGTACCACTGATTG+TGG | + | chr2_3:25982331-25982350 | Msa0285900:intron | 40.0% |
| ATCTTTCCTTCCACAATCAG+TGG | - | chr2_3:25982344-25982363 | None:intergenic | 40.0% | |
| TGGAAGGAAAGATACTCCAT+AGG | + | chr2_3:25982351-25982370 | Msa0285900:intron | 40.0% | |
| TGGTTCCAATAAGATGAGGA+AGG | + | chr2_3:25982409-25982428 | Msa0285900:intron | 40.0% | |
| !!! | GCGGAAGGTATTTTGTTATG+GGG | - | chr2_3:25982455-25982474 | None:intergenic | 40.0% |
| !!! | GGCGGAAGGTATTTTGTTAT+GGG | - | chr2_3:25982456-25982475 | None:intergenic | 40.0% |
| ! | AGAGAGAGGGTCTTCATTTT+AGG | + | chr2_3:25982494-25982513 | Msa0285900:intron | 40.0% |
| ATGTGCACAATCCAATGCAA+GGG | - | chr2_3:25982534-25982553 | None:intergenic | 40.0% | |
| AATGTGCACAATCCAATGCA+AGG | - | chr2_3:25982535-25982554 | None:intergenic | 40.0% | |
| GAAAGTGAGTAGAAAGTGAG+TGG | - | chr2_3:25983053-25983072 | None:intergenic | 40.0% | |
| GGATCACAAGAGAAAAGGTA+AGG | - | chr2_3:25983109-25983128 | None:intergenic | 40.0% | |
| GTGATCCAAACAAAGCCTTA+AGG | + | chr2_3:25983122-25983141 | Msa0285900:intron | 40.0% | |
| GGACTTTAGTGCTTCAATCT+TGG | - | chr2_3:25983164-25983183 | None:intergenic | 40.0% | |
| ! | TAAGATGGTAACGTTTAGCC+TGG | + | chr2_3:25983199-25983218 | Msa0285900:intron | 40.0% |
| ! | AAGATGGTAACGTTTAGCCT+GGG | + | chr2_3:25983200-25983219 | Msa0285900:intron | 40.0% |
| ! | AAGGCTAATTTTTCCCACCA+TGG | + | chr2_3:25983224-25983243 | Msa0285900:intron | 40.0% |
| ! | AGGCTAATTTTTCCCACCAT+GGG | + | chr2_3:25983225-25983244 | Msa0285900:intron | 40.0% |
| TGGTTGAGGTTGAAGAGAAA+TGG | - | chr2_3:25983324-25983343 | None:intergenic | 40.0% | |
| GAAAGTGAGAAATCTGGTTG+AGG | - | chr2_3:25983338-25983357 | None:intergenic | 40.0% | |
| GAGAGAGAAAGTGAGAAATC+TGG | - | chr2_3:25983344-25983363 | None:intergenic | 40.0% | |
| ! | GAAGATGATGGTGATGAATG+TGG | + | chr2_3:25983701-25983720 | Msa0285900:intron | 40.0% |
| ! | GAACTCTAGCACTGAAAAGA+TGG | + | chr2_3:25983999-25984018 | Msa0285900:intron | 40.0% |
| ! | TCTAGCACTGAAAAGATGGA+TGG | + | chr2_3:25984003-25984022 | Msa0285900:intron | 40.0% |
| GTGATAAGAAGCCACAGTTA+CGG | + | chr2_3:25984030-25984049 | Msa0285900:intron | 40.0% | |
| TGAGGATAAGGCACAAATGA+AGG | + | chr2_3:25984054-25984073 | Msa0285900:intron | 40.0% | |
| GAGGATAAGGCACAAATGAA+GGG | + | chr2_3:25984055-25984074 | Msa0285900:intron | 40.0% | |
| AGGATAAGGCACAAATGAAG+GGG | + | chr2_3:25984056-25984075 | Msa0285900:intron | 40.0% | |
| ATGTTCCCTACTTGATCCAA+TGG | + | chr2_3:25984141-25984160 | Msa0285900:intron | 40.0% | |
| ! | GGCTAATTTTTCCCACCATA+TGG | - | chr2_3:25984183-25984202 | None:intergenic | 40.0% |
| AAACTCCACCCACTAAGATA+AGG | + | chr2_3:25984214-25984233 | Msa0285900:intron | 40.0% | |
| AACTCCACCCACTAAGATAA+GGG | + | chr2_3:25984215-25984234 | Msa0285900:intron | 40.0% | |
| TCATGGACCCTTATCTTAGT+GGG | - | chr2_3:25984225-25984244 | None:intergenic | 40.0% | |
| ATCATGGACCCTTATCTTAG+TGG | - | chr2_3:25984226-25984245 | None:intergenic | 40.0% | |
| ! | CGACCTCAACTGTTAATTTG+AGG | + | chr2_3:25984425-25984444 | Msa0285900:intron | 40.0% |
| GCAGTTGAAGAAGCCTATAA+AGG | + | chr2_3:25984619-25984638 | Msa0285900:CDS | 40.0% | |
| ! | GTTGTCACAACATGGTTCTA+AGG | + | chr2_3:25984707-25984726 | Msa0285900:CDS | 40.0% |
| TGAAGTCACAGCAATAAGAG+AGG | + | chr2_3:25984753-25984772 | Msa0285900:CDS | 40.0% | |
| TATCCACCTTTCACGTGTTA+AGG | + | chr2_3:25985031-25985050 | Msa0285900:intron | 40.0% | |
| ! | CATATAAAGTACCTCGACTC+CGG | + | chr2_3:25985128-25985147 | Msa0285900:intron | 40.0% |
| ! | GACGTCTGACCTAACAATTT+TGG | + | chr2_3:25985155-25985174 | Msa0285900:intron | 40.0% |
| ! | GCATTTTTGTCAGTTGAGCT+AGG | + | chr2_3:25985177-25985196 | Msa0285900:intron | 40.0% |
| TAAAAGAGCTGATGGCAATG+AGG | + | chr2_3:25985434-25985453 | Msa0285900:CDS | 40.0% | |
| GTTCAATAGCTGTGTACCGA+CGG | + | chr2_3:25981982-25982001 | Msa0285900:intron | 45.0% | |
| CTTCCTAGTGGTGCAAAACA+AGG | + | chr2_3:25982171-25982190 | Msa0285900:intron | 45.0% | |
| !!! | CATCCTTGTTTTGCACCACT+AGG | - | chr2_3:25982177-25982196 | None:intergenic | 45.0% |
| CTAGTGGTGCAAAACAAGGA+TGG | + | chr2_3:25982175-25982194 | Msa0285900:intron | 45.0% | |
| ! | TTGGTACCACTGATTGTGGA+AGG | + | chr2_3:25982335-25982354 | Msa0285900:intron | 45.0% |
| !!! | GGGCGGAAGGTATTTTGTTA+TGG | - | chr2_3:25982457-25982476 | None:intergenic | 45.0% |
| ! | TCTTCTCAATTTTGGGCGGA+AGG | - | chr2_3:25982470-25982489 | None:intergenic | 45.0% |
| !! | AATCCAATGCAAGGGTGTCA+AGG | - | chr2_3:25982526-25982545 | None:intergenic | 45.0% |
| !! | GACGACCTTAAGGCTTTGTT+TGG | - | chr2_3:25983130-25983149 | None:intergenic | 45.0% |
| AAAGCCTTAAGGTCGTCTTG+AGG | + | chr2_3:25983133-25983152 | Msa0285900:intron | 45.0% | |
| !! | GGGAAAAATTAGCCTTTCCC+AGG | - | chr2_3:25984189-25984208 | None:intergenic | 45.0% |
| TCTGTTTGGAAAGAGAGGAG+AGG | - | chr2_3:25983375-25983394 | None:intergenic | 45.0% | |
| GTTGGATCCAATTCTTGGGT+TGG | + | chr2_3:25983617-25983636 | Msa0285900:intron | 45.0% | |
| !! | CATGTGTGCTCTGGATTTTC+TGG | + | chr2_3:25983747-25983766 | Msa0285900:intron | 45.0% |
| GAATTAACTGTCACACCAGC+TGG | + | chr2_3:25983769-25983788 | Msa0285900:intron | 45.0% | |
| ! | AGCACTGAAAAGATGGATGG+AGG | + | chr2_3:25984006-25984025 | Msa0285900:intron | 45.0% |
| CTTATCCTCATCCGTAACTG+TGG | - | chr2_3:25984044-25984063 | None:intergenic | 45.0% | |
| CACAGTTACGGATGAGGATA+AGG | + | chr2_3:25984042-25984061 | Msa0285900:intron | 45.0% | |
| !! | GGGAAAAATTAGCCTTTCCC+AGG | + | chr2_3:25984189-25984208 | Msa0285900:intron | 45.0% |
| GGTGTAGAATGTGAAGATGG+AGG | + | chr2_3:25984640-25984659 | Msa0285900:CDS | 45.0% | |
| TGTGAAGATGGAGGTCCATT+TGG | + | chr2_3:25984649-25984668 | Msa0285900:CDS | 45.0% | |
| TGACTTCAGCATGAGCAGAA+GGG | - | chr2_3:25984741-25984760 | None:intergenic | 45.0% | |
| GTCACAGCAATAAGAGAGGT+TGG | + | chr2_3:25984757-25984776 | Msa0285900:intron | 45.0% | |
| GGATAGCACCAAAGCACATT+GGG | - | chr2_3:25985016-25985035 | None:intergenic | 45.0% | |
| TGGATAGCACCAAAGCACAT+TGG | - | chr2_3:25985017-25985036 | None:intergenic | 45.0% | |
| CAACCTTAACACGTGAAAGG+TGG | - | chr2_3:25985037-25985056 | None:intergenic | 45.0% | |
| GGTTTATGGAGCAAAAGCTG+AGG | + | chr2_3:25985329-25985348 | Msa0285900:CDS | 45.0% | |
| !!! | ATTAATTTTATTATCAATTA+AGG | - | chr2_3:25984812-25984831 | None:intergenic | 5.0% |
| !!! | ATTTATTTGTTATTTTTATT+TGG | + | chr2_3:25985214-25985233 | Msa0285900:intron | 5.0% |
| !! | GCAGTAGCTTCTGCTTTTGC+TGG | + | chr2_3:25982205-25982224 | Msa0285900:CDS | 50.0% |
| AGGCTTGGAAACGGTCCTTT+AGG | + | chr2_3:25982306-25982325 | Msa0285900:intron | 50.0% | |
| AAAACCGTGCTTCCCCTGTT+TGG | + | chr2_3:25982389-25982408 | Msa0285900:intron | 50.0% | |
| AGACCTTGACACCCTTGCAT+TGG | + | chr2_3:25982520-25982539 | Msa0285900:intron | 50.0% | |
| GGTAACGTTTAGCCTGGGAA+AGG | + | chr2_3:25983205-25983224 | Msa0285900:intron | 50.0% | |
| GTTTGGAAAGAGAGGAGAGG+AGG | - | chr2_3:25983372-25983391 | None:intergenic | 50.0% | |
| AGAAGCCACAGTTACGGATG+AGG | + | chr2_3:25984036-25984055 | Msa0285900:intron | 50.0% | |
| AGGCACAAATGAAGGGGAGA+AGG | + | chr2_3:25984062-25984081 | Msa0285900:intron | 50.0% | |
| GGCACAAATGAAGGGGAGAA+GGG | + | chr2_3:25984063-25984082 | Msa0285900:intron | 50.0% | |
| ACAAATGAAGGGGAGAAGGG+TGG | + | chr2_3:25984066-25984085 | Msa0285900:intron | 50.0% | |
| !! | GGTGGTGATGGAAGATGATG+TGG | + | chr2_3:25984084-25984103 | Msa0285900:intron | 50.0% |
| ! | TAGTGGGTGGAGTTTAGCCT+GGG | - | chr2_3:25984209-25984228 | None:intergenic | 50.0% |
| ! | TTAGTGGGTGGAGTTTAGCC+TGG | - | chr2_3:25984210-25984229 | None:intergenic | 50.0% |
| TGGACCCTTATCTTAGTGGG+TGG | - | chr2_3:25984222-25984241 | None:intergenic | 50.0% | |
| GTGACTTCAGCATGAGCAGA+AGG | - | chr2_3:25984742-25984761 | None:intergenic | 50.0% | |
| GAACCATGCCCAATGTGCTT+TGG | + | chr2_3:25985005-25985024 | Msa0285900:intron | 50.0% | |
| GTTAGGTCAGACGTCATGAC+CGG | - | chr2_3:25985150-25985169 | None:intergenic | 50.0% | |
| GCTGAGGCAGCAATTGCAAT+TGG | + | chr2_3:25985345-25985364 | Msa0285900:CDS | 50.0% | |
| GCTGATGCATTACGAGGAAC+TGG | + | chr2_3:25985384-25985403 | Msa0285900:CDS | 50.0% | |
| ! | GCTTTTGCTGGCCACAAGCA+AGG | + | chr2_3:25982217-25982236 | Msa0285900:CDS | 55.0% |
| GGAACCAAACAGGGGAAGCA+CGG | - | chr2_3:25982396-25982415 | None:intergenic | 55.0% | |
| CCAGCCTCAAGACGACCTTA+AGG | - | chr2_3:25983140-25983159 | None:intergenic | 55.0% | |
| CCTTAAGGTCGTCTTGAGGC+TGG | + | chr2_3:25983137-25983156 | Msa0285900:intron | 55.0% | |
| TGGAAAGAGAGGAGAGGAGG+AGG | - | chr2_3:25983369-25983388 | None:intergenic | 55.0% | |
| GGTGGAGTTTAGCCTGGGAA+AGG | - | chr2_3:25984204-25984223 | None:intergenic | 55.0% | |
| GCACCAAAGCACATTGGGCA+TGG | - | chr2_3:25985011-25985030 | None:intergenic | 55.0% | |
| GAAGGGGAGAAGGGTGGTGA+TGG | + | chr2_3:25984072-25984091 | Msa0285900:intron | 60.0% | |
| AGACGTCATGACCGGAGTCG+AGG | - | chr2_3:25985142-25985161 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 25981707 | 25985778 | 25981707 | ID=Msa0285900;Name=Msa0285900 |
| chr2_3 | mRNA | 25981707 | 25985778 | 25981707 | ID=Msa0285900-mRNA-1;Parent=Msa0285900;Name=Msa0285900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=55|0.66|1|1|0.66|0.5|4|266|146 |
| chr2_3 | exon | 25981707 | 25981762 | 25981707 | ID=Msa0285900-mRNA-1:exon:9541;Parent=Msa0285900-mRNA-1 |
| chr2_3 | exon | 25982179 | 25982238 | 25982179 | ID=Msa0285900-mRNA-1:exon:9542;Parent=Msa0285900-mRNA-1 |
| chr2_3 | exon | 25984584 | 25984774 | 25984584 | ID=Msa0285900-mRNA-1:exon:9543;Parent=Msa0285900-mRNA-1 |
| chr2_3 | exon | 25985324 | 25985778 | 25985324 | ID=Msa0285900-mRNA-1:exon:9544;Parent=Msa0285900-mRNA-1 |
| chr2_3 | five_prime_UTR | 25981707 | 25981761 | 25981707 | ID=Msa0285900-mRNA-1:five_prime_utr;Parent=Msa0285900-mRNA-1 |
| chr2_3 | CDS | 25981762 | 25981762 | 25981762 | ID=Msa0285900-mRNA-1:cds;Parent=Msa0285900-mRNA-1 |
| chr2_3 | CDS | 25982179 | 25982238 | 25982179 | ID=Msa0285900-mRNA-1:cds;Parent=Msa0285900-mRNA-1 |
| chr2_3 | CDS | 25984584 | 25984774 | 25984584 | ID=Msa0285900-mRNA-1:cds;Parent=Msa0285900-mRNA-1 |
| chr2_3 | CDS | 25985324 | 25985512 | 25985324 | ID=Msa0285900-mRNA-1:cds;Parent=Msa0285900-mRNA-1 |
| chr2_3 | three_prime_UTR | 25985513 | 25985778 | 25985513 | ID=Msa0285900-mRNA-1:three_prime_utr;Parent=Msa0285900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
