AlfalfaGEDB | Msa0285900

M. sativa cultivar zhongmu-4 / Msa0285900

KEGG: -
GO: GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360
PFAM: PF00383.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285900	XP_024631349.1	80.110	181	1	1	1	146	1	181	2.33e-93	278

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285900	sp\|Q94BU8\|GSDA_ARATH	64.444	180	29	1	2	146	6	185	2.81e-76	227

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285900	B7FGY2	80.110	181	1	1	1	146	1	181	1.11e-93	278

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0204150	Msa0285900	0.929134	1.074098e-92	-8.615850e-47
Msa0285900	Msa0324820	0.966998	1.123920e-126	-8.615850e-47
Msa0285900	Msa1158620	0.804083	2.561221e-49	-8.615850e-47
Msa0285900	Msa1405510	0.968936	2.161791e-129	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285900	MtrunA17_Chr2g0302351	79.558	181	2	1	1	146	5	185	7.70e-97	276
Msa0285900	MtrunA17_Chr4g0069501	69.061	181	21	1	1	146	6	186	1.82e-83	243
Msa0285900	MtrunA17_Chr1g0191001	59.748	159	29	1	23	146	11	169	6.80e-58	177
Msa0285900	MtrunA17_Chr1g0190991	46.835	158	43	3	22	144	24	175	1.40e-37	126
Msa0285900	MtrunA17_Chr1g0190971	46.497	157	42	4	23	143	12	162	2.98e-34	117
Msa0285900	MtrunA17_Chr3g0077671	44.371	151	39	3	15	143	69	196	4.67e-29	107
Msa0285900	MtrunA17_Chr1g0190981	66.129	62	15	1	23	84	18	73	1.21e-22	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285900	AT5G28050.1	64.444	180	29	1	2	146	6	185	2.86e-77	227
Msa0285900	AT5G28050.2	63.889	180	30	1	2	146	25	204	9.77e-77	227
Msa0285900	AT5G28050.3	64.444	180	29	1	2	146	111	290	1.38e-76	229
Msa0285900	AT3G05300.1	39.130	115	32	2	66	145	1	112	3.54e-17	72.8

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Find 34 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATAACAGCACCAAA+TGG	0.503753	2_3:-25984664	None:intergenic
AAACACTTCTTCAGCAATTA+TGG	0.210407	2_3:-25985457	None:intergenic
AAAGGTGTAGAATGTGAAGA+TGG	0.546002	2_3:+25984637	Msa0285900:CDS
AACTCTTATTGATATAGAAA+AGG	0.500839	2_3:-25985754	None:intergenic
AATATTTGAATCATAGAAGT+TGG	0.414352	2_3:+25985730	Msa0285900:three_prime_UTR
AGAAGTGTTTGAGAAAACAA+AGG	0.641403	2_3:+25985470	Msa0285900:CDS
AGAGTTAATCACAATGACTT+AGG	0.491851	2_3:-25985528	None:intergenic
ATATTTGAATCATAGAAGTT+GGG	0.495533	2_3:+25985731	Msa0285900:three_prime_UTR
CATAGAAGTATTGTTTGTGG+AGG	0.597271	2_3:+25985601	Msa0285900:three_prime_UTR
CTAGTGGTGCAAAACAAGGA+TGG	0.573459	2_3:+25982175	Msa0285900:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGTAAGTGATCGAAT+TGG	+	chr2_3:25981757-25981776	Msa0285900:intron	30.0%
TTAGTCATGGAAGAAATTAG+TGG	+	chr2_3:25981889-25981908	Msa0285900:intron	30.0%
GATGAAAGAAAGAGTGAAAT+TGG	-	chr2_3:25982274-25982293	None:intergenic	30.0%
CTTTCATCATCACATTATGT+AGG	+	chr2_3:25982286-25982305	Msa0285900:intron	30.0%
GAGATGATTGTATGATTGTT+TGG	-	chr2_3:25983025-25983044	None:intergenic	30.0%
GTTAAAAACTAACTTTCCCA+TGG	-	chr2_3:25984163-25984182	None:intergenic	30.0%
GGAGAAAAATCTAATGTTGA+GGG	-	chr2_3:25983303-25983322	None:intergenic	30.0%
TGGAGAAAAATCTAATGTTG+AGG	-	chr2_3:25983304-25983323	None:intergenic	30.0%
TTCTTATGAGTTAAACATGG+TGG	-	chr2_3:25983411-25983430	None:intergenic	30.0%
TAGCTTAGACTTTGATCAAT+TGG	+	chr2_3:25983456-25983475	Msa0285900:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	25981707	25985778	25981707	ID=Msa0285900;Name=Msa0285900
chr2_3	mRNA	25981707	25985778	25981707	ID=Msa0285900-mRNA-1;Parent=Msa0285900;Name=Msa0285900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=55\|0.66\|1\|1\|0.66\|0.5\|4\|266\|146
chr2_3	exon	25981707	25981762	25981707	ID=Msa0285900-mRNA-1:exon:9541;Parent=Msa0285900-mRNA-1
chr2_3	exon	25982179	25982238	25982179	ID=Msa0285900-mRNA-1:exon:9542;Parent=Msa0285900-mRNA-1
chr2_3	exon	25984584	25984774	25984584	ID=Msa0285900-mRNA-1:exon:9543;Parent=Msa0285900-mRNA-1
chr2_3	exon	25985324	25985778	25985324	ID=Msa0285900-mRNA-1:exon:9544;Parent=Msa0285900-mRNA-1
chr2_3	five_prime_UTR	25981707	25981761	25981707	ID=Msa0285900-mRNA-1:five_prime_utr;Parent=Msa0285900-mRNA-1
chr2_3	CDS	25981762	25981762	25981762	ID=Msa0285900-mRNA-1:cds;Parent=Msa0285900-mRNA-1
chr2_3	CDS	25982179	25982238	25982179	ID=Msa0285900-mRNA-1:cds;Parent=Msa0285900-mRNA-1
chr2_3	CDS	25984584	25984774	25984584	ID=Msa0285900-mRNA-1:cds;Parent=Msa0285900-mRNA-1
chr2_3	CDS	25985324	25985512	25985324	ID=Msa0285900-mRNA-1:cds;Parent=Msa0285900-mRNA-1
chr2_3	three_prime_UTR	25985513	25985778	25985513	ID=Msa0285900-mRNA-1:three_prime_utr;Parent=Msa0285900-mRNA-1

Gene Sequence

>Msa0285900

ATGGTGCAAAACAAGGATGGAACTGTTGCAGTAGCTTCTGCTTTTGCTGGCCACAAGCAAGCTATAAAGGATAGAGACCATAAATTTTTAAGAAAAGCAGTTGAAGAAGCCTATAAAGGTGTAGAATGTGAAGATGGAGGTCCATTTGGTGCTGTTATAGTTTTGAATGATGAAGTTATTGCTAGTTGTCACAACATGGTTCTAAGGAACACTGACCCTTCTGCTCATGCTGAAGTCACAGCAATAAGAGAGAGGTTGGTTTATGGAGCAAAAGCTGAGGCAGCAATTGCAATTGGTTTTGATGATTTTATAGCTGATGCATTACGAGGAACTGGATTTTATCAGAAAGCACAATTGGAGATTAAAAGAGCTGATGGCAATGAGGCCATAATTGCTGAAGAAGTGTTTGAGAAAACAAAGGAAAAATTTCGAATGTATTAA

Protein sequence

>Msa0285900

MVQNKDGTVAVASAFAGHKQAIKDRDHKFLRKAVEEAYKGVECEDGGPFGAVIVLNDEVIASCHNMVLRNTDPSAHAEVTAIRERLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKRADGNEAIIAEEVFEKTKEKFRMY*