Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204150 | XP_024631349.1 | 80.110 | 181 | 1 | 1 | 1 | 146 | 1 | 181 | 2.33e-93 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204150 | sp|Q94BU8|GSDA_ARATH | 64.444 | 180 | 29 | 1 | 2 | 146 | 6 | 185 | 2.81e-76 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204150 | B7FGY2 | 80.110 | 181 | 1 | 1 | 1 | 146 | 1 | 181 | 1.11e-93 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204150 | Msa0285900 | 0.929134 | 1.074098e-92 | -8.615850e-47 |
| Msa0204150 | Msa0324820 | 0.924416 | 7.256280e-90 | -8.615850e-47 |
| Msa0204150 | Msa0612590 | 0.805920 | 1.057329e-49 | -8.615850e-47 |
| Msa0204150 | Msa0837320 | 0.800355 | 1.498482e-48 | -8.615850e-47 |
| Msa0204150 | Msa1405510 | 0.925651 | 1.373542e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204150 | MtrunA17_Chr2g0302351 | 79.558 | 181 | 2 | 1 | 1 | 146 | 5 | 185 | 7.70e-97 | 276 |
| Msa0204150 | MtrunA17_Chr4g0069501 | 69.061 | 181 | 21 | 1 | 1 | 146 | 6 | 186 | 1.82e-83 | 243 |
| Msa0204150 | MtrunA17_Chr1g0191001 | 59.748 | 159 | 29 | 1 | 23 | 146 | 11 | 169 | 6.80e-58 | 177 |
| Msa0204150 | MtrunA17_Chr1g0190991 | 46.835 | 158 | 43 | 3 | 22 | 144 | 24 | 175 | 1.40e-37 | 126 |
| Msa0204150 | MtrunA17_Chr1g0190971 | 46.497 | 157 | 42 | 4 | 23 | 143 | 12 | 162 | 2.98e-34 | 117 |
| Msa0204150 | MtrunA17_Chr3g0077671 | 44.371 | 151 | 39 | 3 | 15 | 143 | 69 | 196 | 4.67e-29 | 107 |
| Msa0204150 | MtrunA17_Chr1g0190981 | 66.129 | 62 | 15 | 1 | 23 | 84 | 18 | 73 | 1.21e-22 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204150 | AT5G28050.1 | 64.444 | 180 | 29 | 1 | 2 | 146 | 6 | 185 | 2.86e-77 | 227 |
| Msa0204150 | AT5G28050.2 | 63.889 | 180 | 30 | 1 | 2 | 146 | 25 | 204 | 9.77e-77 | 227 |
| Msa0204150 | AT5G28050.3 | 64.444 | 180 | 29 | 1 | 2 | 146 | 111 | 290 | 1.38e-76 | 229 |
| Msa0204150 | AT3G05300.1 | 39.130 | 115 | 32 | 2 | 66 | 145 | 1 | 112 | 3.54e-17 | 72.8 |
Find 33 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACATTCTACACCTTTAT+AGG | 0.164004 | 2_1:-29003115 | None:intergenic |
| TTTATGTAGAGGTTGGTTTA+TGG | 0.196375 | 2_1:+29003821 | Msa0204150:intron |
| AAACACTTCTTCAGCAATAA+TGG | 0.327712 | 2_1:-29003963 | None:intergenic |
| TTGTTTGTGGAGGATCAAAA+TGG | 0.374746 | 2_1:+29004117 | Msa0204150:three_prime_UTR |
| GCTGAGGCAGCAATTGCAAT+TGG | 0.405341 | 2_1:+29003851 | Msa0204150:CDS |
| AATATTTGAATCATAGAAGT+TGG | 0.414352 | 2_1:+29004273 | Msa0204150:three_prime_UTR |
| GCAGTTGAAGAAGCCTATAA+AGG | 0.442236 | 2_1:+29003102 | Msa0204150:CDS |
| GTTGTCACAACATGGTTCTA+AGG | 0.442612 | 2_1:+29003190 | Msa0204150:CDS |
| GCTGATGCATTACGAGGAAC+TGG | 0.446579 | 2_1:+29003890 | Msa0204150:CDS |
| GATTGTGTAATTAGCTATCA+AGG | 0.446785 | 2_1:+29003053 | Msa0204150:intron |
| TATATACTTGTATTCACATA+AGG | 0.466768 | 2_1:+29002079 | None:intergenic |
| TGTGAAGATGGAGGTCCATT+TGG | 0.477425 | 2_1:+29003132 | Msa0204150:CDS |
| AGAGTTAATCACAATGACTT+AGG | 0.491851 | 2_1:-29004034 | None:intergenic |
| ATATTTGAATCATAGAAGTT+GGG | 0.495533 | 2_1:+29004274 | Msa0204150:three_prime_UTR |
| AACTCTTATTGATATAGAAA+AGG | 0.500839 | 2_1:-29004297 | None:intergenic |
| AAAACTATAACAGCACCAAA+TGG | 0.503753 | 2_1:-29003147 | None:intergenic |
| GTGACTTCAGCATGAGCAGA+AGG | 0.538349 | 2_1:-29003222 | None:intergenic |
| TTGGAAATTAAAAGAGCTGA+TGG | 0.543138 | 2_1:+29003932 | Msa0204150:CDS |
| AAAGGTGTAGAATGTGAAGA+TGG | 0.546002 | 2_1:+29003120 | Msa0204150:CDS |
| TATCATAGAAGTATTGTTTG+TGG | 0.548325 | 2_1:+29004104 | Msa0204150:three_prime_UTR |
| CATCGTAGTGGTGCAAAACA+AGG | 0.564193 | 2_1:+29002627 | Msa0204150:intron |
| TACTTCTATGATACACATGA+TGG | 0.567719 | 2_1:-29004094 | None:intergenic |
| CAGAAACAATACCTTGCTTG+TGG | 0.592546 | 2_1:-29002684 | None:intergenic |
| TATTGCTAGTTGTCACAACA+TGG | 0.593501 | 2_1:+29003182 | Msa0204150:CDS |
| CATAGAAGTATTGTTTGTGG+AGG | 0.597271 | 2_1:+29004107 | Msa0204150:three_prime_UTR |
| GTAGTGGTGCAAAACAAGGA+TGG | 0.618033 | 2_1:+29002631 | Msa0204150:intron |
| TTTATAGCTGATGCATTACG+AGG | 0.630911 | 2_1:+29003884 | Msa0204150:CDS |
| TAAAAGAGCTGATGGCAATG+AGG | 0.637653 | 2_1:+29003940 | Msa0204150:CDS |
| AGAAGTGTTTGAGAAAACAA+AGG | 0.641403 | 2_1:+29003976 | Msa0204150:CDS |
| TGACTTCAGCATGAGCAGAA+GGG | 0.653823 | 2_1:-29003221 | None:intergenic |
| GGTGTAGAATGTGAAGATGG+AGG | 0.657918 | 2_1:+29003123 | Msa0204150:CDS |
| GGTTTATGGAGCAAAAGCTG+AGG | 0.686000 | 2_1:+29003835 | Msa0204150:CDS |
| TGAAGTCACAGCAATAAGAG+AGG | 0.692221 | 2_1:+29003236 | Msa0204150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATCAAAACATATATAAT+AGG | - | chr2_1:29002471-29002490 | None:intergenic | 10.0% |
| !! | ATTATTTAAACTGATTATTA+TGG | + | chr2_1:29002568-29002587 | Msa0204150:intron | 10.0% |
| !!! | TTATTTCTTTTAGTTAATAT+TGG | + | chr2_1:29003343-29003362 | Msa0204150:intron | 10.0% |
| !! | AAATAAATAAATAAATGCAA+AGG | - | chr2_1:29003556-29003575 | None:intergenic | 10.0% |
| !!! | TCTATTTCTTTTTTTTTTTT+TGG | + | chr2_1:29004195-29004214 | Msa0204150:intron | 10.0% |
| !! | ATAATCAAAACATATATAAT+AGG | - | chr2_1:29002471-29002490 | None:intergenic | 10.0% |
| !! | ATTATTTAAACTGATTATTA+TGG | + | chr2_1:29002568-29002587 | Msa0204150:intron | 10.0% |
| !!! | TTATTTCTTTTAGTTAATAT+TGG | + | chr2_1:29003343-29003362 | Msa0204150:intron | 10.0% |
| !! | AAATAAATAAATAAATGCAA+AGG | - | chr2_1:29003556-29003575 | None:intergenic | 10.0% |
| !!! | TCTATTTCTTTTTTTTTTTT+TGG | + | chr2_1:29004195-29004214 | Msa0204150:intron | 10.0% |
| !! | TGTATCATTTATTTATAAGT+TGG | + | chr2_1:29002433-29002452 | Msa0204150:intron | 15.0% |
| !!! | TAGTATTATTTTTTATGTAG+AGG | + | chr2_1:29003810-29003829 | Msa0204150:intron | 15.0% |
| !! | TGTATCATTTATTTATAAGT+TGG | + | chr2_1:29002433-29002452 | Msa0204150:intron | 15.0% |
| !!! | TAGTATTATTTTTTATGTAG+AGG | + | chr2_1:29003810-29003829 | Msa0204150:intron | 15.0% |
| !! | AAAAAAATCAACTTTAGTCA+TGG | + | chr2_1:29002259-29002278 | Msa0204150:intron | 20.0% |
| !! | AGCTATTCAACATTTAATAT+TGG | - | chr2_1:29002327-29002346 | None:intergenic | 20.0% |
| !! | TGATGTAAAAGTTATAAACA+TGG | - | chr2_1:29002515-29002534 | None:intergenic | 20.0% |
| !! | TAAATAAATGCAAAGGAATT+AGG | - | chr2_1:29003549-29003568 | None:intergenic | 20.0% |
| !!! | TTTATTATTTTCCGATGAAA+TGG | + | chr2_1:29003577-29003596 | Msa0204150:intron | 20.0% |
| !!! | ATTTCTTTGTAACATACTTT+TGG | + | chr2_1:29003767-29003786 | Msa0204150:intron | 20.0% |
| !!! | ATTATTTTTTATGTAGAGGT+TGG | + | chr2_1:29003814-29003833 | Msa0204150:intron | 20.0% |
| !! | AAAGAAATAGATACAATACA+AGG | - | chr2_1:29004186-29004205 | None:intergenic | 20.0% |
| !!! | AATAGCCTGTTTAATTTTTA+AGG | + | chr2_1:29004239-29004258 | Msa0204150:three_prime_UTR | 20.0% |
| !! | AATATTTGAATCATAGAAGT+TGG | + | chr2_1:29004273-29004292 | Msa0204150:three_prime_UTR | 20.0% |
| !! | ATATTTGAATCATAGAAGTT+GGG | + | chr2_1:29004274-29004293 | Msa0204150:three_prime_UTR | 20.0% |
| !! | AACTCTTATTGATATAGAAA+AGG | - | chr2_1:29004300-29004319 | None:intergenic | 20.0% |
| !!! | TTTTCTATATCAATAAGAGT+TGG | + | chr2_1:29004299-29004318 | Msa0204150:three_prime_UTR | 20.0% |
| !! | AAAAAAATCAACTTTAGTCA+TGG | + | chr2_1:29002259-29002278 | Msa0204150:intron | 20.0% |
| !! | AGCTATTCAACATTTAATAT+TGG | - | chr2_1:29002327-29002346 | None:intergenic | 20.0% |
| !! | TGATGTAAAAGTTATAAACA+TGG | - | chr2_1:29002515-29002534 | None:intergenic | 20.0% |
| !! | TAAATAAATGCAAAGGAATT+AGG | - | chr2_1:29003549-29003568 | None:intergenic | 20.0% |
| !!! | TTTATTATTTTCCGATGAAA+TGG | + | chr2_1:29003577-29003596 | Msa0204150:intron | 20.0% |
| !!! | ATTTCTTTGTAACATACTTT+TGG | + | chr2_1:29003767-29003786 | Msa0204150:intron | 20.0% |
| !!! | ATTATTTTTTATGTAGAGGT+TGG | + | chr2_1:29003814-29003833 | Msa0204150:intron | 20.0% |
| !! | AAAGAAATAGATACAATACA+AGG | - | chr2_1:29004186-29004205 | None:intergenic | 20.0% |
| !!! | AATAGCCTGTTTAATTTTTA+AGG | + | chr2_1:29004239-29004258 | Msa0204150:three_prime_UTR | 20.0% |
| !! | AATATTTGAATCATAGAAGT+TGG | + | chr2_1:29004273-29004292 | Msa0204150:three_prime_UTR | 20.0% |
| !! | ATATTTGAATCATAGAAGTT+GGG | + | chr2_1:29004274-29004293 | Msa0204150:three_prime_UTR | 20.0% |
| !! | AACTCTTATTGATATAGAAA+AGG | - | chr2_1:29004300-29004319 | None:intergenic | 20.0% |
| ! | AAAAGAGTAAGTTATCGAAT+TGG | + | chr2_1:29002132-29002151 | Msa0204150:intron | 25.0% |
| ! | AGCTAATGTAGTATTATGTA+TGG | + | chr2_1:29002343-29002362 | Msa0204150:intron | 25.0% |
| ! | AATGAATGAAAGAGTGAAAT+TGG | - | chr2_1:29002730-29002749 | None:intergenic | 25.0% |
| ! | ATGCGTTACACAATAATAAA+TGG | - | chr2_1:29002978-29002997 | None:intergenic | 25.0% |
| !!! | ACATAATGCTATCATTTTTC+AGG | + | chr2_1:29003409-29003428 | Msa0204150:intron | 25.0% |
| ! | TTTGTATGTGTGAGTTATTA+TGG | - | chr2_1:29003608-29003627 | None:intergenic | 25.0% |
| !!! | ATTTTATCAGAAAGCACAAT+TGG | + | chr2_1:29003913-29003932 | Msa0204150:CDS | 25.0% |
| !!! | TATCATAGAAGTATTGTTTG+TGG | + | chr2_1:29004104-29004123 | Msa0204150:three_prime_UTR | 25.0% |
| ! | TTCCTCCTTAAAAATTAAAC+AGG | - | chr2_1:29004247-29004266 | None:intergenic | 25.0% |
| ! | AAAAGAGTAAGTTATCGAAT+TGG | + | chr2_1:29002132-29002151 | Msa0204150:intron | 25.0% |
| ! | AGCTAATGTAGTATTATGTA+TGG | + | chr2_1:29002343-29002362 | Msa0204150:intron | 25.0% |
| ! | AATGAATGAAAGAGTGAAAT+TGG | - | chr2_1:29002730-29002749 | None:intergenic | 25.0% |
| ! | ATGCGTTACACAATAATAAA+TGG | - | chr2_1:29002978-29002997 | None:intergenic | 25.0% |
| !!! | ACATAATGCTATCATTTTTC+AGG | + | chr2_1:29003409-29003428 | Msa0204150:intron | 25.0% |
| ! | TTTGTATGTGTGAGTTATTA+TGG | - | chr2_1:29003608-29003627 | None:intergenic | 25.0% |
| !!! | ATTTTATCAGAAAGCACAAT+TGG | + | chr2_1:29003913-29003932 | Msa0204150:CDS | 25.0% |
| !!! | TATCATAGAAGTATTGTTTG+TGG | + | chr2_1:29004104-29004123 | Msa0204150:three_prime_UTR | 25.0% |
| ! | TTCCTCCTTAAAAATTAAAC+AGG | - | chr2_1:29004247-29004266 | None:intergenic | 25.0% |
| ATTACCATCAACTTTAGTCA+TGG | + | chr2_1:29002199-29002218 | Msa0204150:intron | 30.0% | |
| TTAGTCATGGAAGAAATTAG+TGG | + | chr2_1:29002272-29002291 | Msa0204150:intron | 30.0% | |
| !!! | TTTGTTTTTGATCATCGTAG+TGG | + | chr2_1:29002615-29002634 | Msa0204150:intron | 30.0% |
| GATTGTGTAATTAGCTATCA+AGG | + | chr2_1:29003053-29003072 | Msa0204150:intron | 30.0% | |
| !! | CTGCTTTTCTTAAAAACTTG+TGG | - | chr2_1:29003086-29003105 | None:intergenic | 30.0% |
| TTCACATTCTACACCTTTAT+AGG | - | chr2_1:29003118-29003137 | None:intergenic | 30.0% | |
| AAAACTATAACAGCACCAAA+TGG | - | chr2_1:29003150-29003169 | None:intergenic | 30.0% | |
| AGAGAGGTTAGATTATAAAC+AGG | + | chr2_1:29003252-29003271 | Msa0204150:intron | 30.0% | |
| AATAACTCACACATACAAAG+TGG | + | chr2_1:29003609-29003628 | Msa0204150:intron | 30.0% | |
| !! | TTTATGTAGAGGTTGGTTTA+TGG | + | chr2_1:29003821-29003840 | Msa0204150:intron | 30.0% |
| TTGGAAATTAAAAGAGCTGA+TGG | + | chr2_1:29003932-29003951 | Msa0204150:CDS | 30.0% | |
| AAACACTTCTTCAGCAATAA+TGG | - | chr2_1:29003966-29003985 | None:intergenic | 30.0% | |
| !! | AGAAGTGTTTGAGAAAACAA+AGG | + | chr2_1:29003976-29003995 | Msa0204150:CDS | 30.0% |
| AGAGTTAATCACAATGACTT+AGG | - | chr2_1:29004037-29004056 | None:intergenic | 30.0% | |
| TACTTCTATGATACACATGA+TGG | - | chr2_1:29004097-29004116 | None:intergenic | 30.0% | |
| !! | AGCCTGTTTAATTTTTAAGG+AGG | + | chr2_1:29004242-29004261 | Msa0204150:three_prime_UTR | 30.0% |
| ATTACCATCAACTTTAGTCA+TGG | + | chr2_1:29002199-29002218 | Msa0204150:intron | 30.0% | |
| TTAGTCATGGAAGAAATTAG+TGG | + | chr2_1:29002272-29002291 | Msa0204150:intron | 30.0% | |
| !!! | TTTGTTTTTGATCATCGTAG+TGG | + | chr2_1:29002615-29002634 | Msa0204150:intron | 30.0% |
| GATTGTGTAATTAGCTATCA+AGG | + | chr2_1:29003053-29003072 | Msa0204150:intron | 30.0% | |
| !! | CTGCTTTTCTTAAAAACTTG+TGG | - | chr2_1:29003086-29003105 | None:intergenic | 30.0% |
| TTCACATTCTACACCTTTAT+AGG | - | chr2_1:29003118-29003137 | None:intergenic | 30.0% | |
| AAAACTATAACAGCACCAAA+TGG | - | chr2_1:29003150-29003169 | None:intergenic | 30.0% | |
| AGAGAGGTTAGATTATAAAC+AGG | + | chr2_1:29003252-29003271 | Msa0204150:intron | 30.0% | |
| AATAACTCACACATACAAAG+TGG | + | chr2_1:29003609-29003628 | Msa0204150:intron | 30.0% | |
| !! | TTTATGTAGAGGTTGGTTTA+TGG | + | chr2_1:29003821-29003840 | Msa0204150:intron | 30.0% |
| TTGGAAATTAAAAGAGCTGA+TGG | + | chr2_1:29003932-29003951 | Msa0204150:CDS | 30.0% | |
| AAACACTTCTTCAGCAATAA+TGG | - | chr2_1:29003966-29003985 | None:intergenic | 30.0% | |
| !! | AGAAGTGTTTGAGAAAACAA+AGG | + | chr2_1:29003976-29003995 | Msa0204150:CDS | 30.0% |
| AGAGTTAATCACAATGACTT+AGG | - | chr2_1:29004037-29004056 | None:intergenic | 30.0% | |
| TACTTCTATGATACACATGA+TGG | - | chr2_1:29004097-29004116 | None:intergenic | 30.0% | |
| !! | AGCCTGTTTAATTTTTAAGG+AGG | + | chr2_1:29004242-29004261 | Msa0204150:three_prime_UTR | 30.0% |
| !!! | CACGTTGTCACTTTTAAGAT+CGG | + | chr2_1:29002790-29002809 | Msa0204150:intron | 35.0% |
| GGTTCGATCACTATTTAAGT+CGG | + | chr2_1:29002811-29002830 | Msa0204150:intron | 35.0% | |
| AGTTAACTCACCCTGAATTA+AGG | + | chr2_1:29002893-29002912 | Msa0204150:intron | 35.0% | |
| GTTAACTCACCCTGAATTAA+GGG | + | chr2_1:29002894-29002913 | Msa0204150:intron | 35.0% | |
| !! | AATGGGCAATTTTGAAAGGA+AGG | + | chr2_1:29002917-29002936 | Msa0204150:intron | 35.0% |
| CGCATATACTTGTAGACATT+AGG | + | chr2_1:29002993-29003012 | Msa0204150:intron | 35.0% | |
| ! | AAAGGTGTAGAATGTGAAGA+TGG | + | chr2_1:29003120-29003139 | Msa0204150:CDS | 35.0% |
| TATTGCTAGTTGTCACAACA+TGG | + | chr2_1:29003182-29003201 | Msa0204150:CDS | 35.0% | |
| ! | TTATGGCTTTGCCATTTCAT+CGG | - | chr2_1:29003591-29003610 | None:intergenic | 35.0% |
| TTAAGTCAGACATTATGACC+GGG | - | chr2_1:29003651-29003670 | None:intergenic | 35.0% | |
| GTTAAGTCAGACATTATGAC+CGG | - | chr2_1:29003652-29003671 | None:intergenic | 35.0% | |
| TTTATAGCTGATGCATTACG+AGG | + | chr2_1:29003884-29003903 | Msa0204150:CDS | 35.0% | |
| !! | CATAGAAGTATTGTTTGTGG+AGG | + | chr2_1:29004107-29004126 | Msa0204150:three_prime_UTR | 35.0% |
| TTGTTTGTGGAGGATCAAAA+TGG | + | chr2_1:29004117-29004136 | Msa0204150:three_prime_UTR | 35.0% | |
| !!! | CACGTTGTCACTTTTAAGAT+CGG | + | chr2_1:29002790-29002809 | Msa0204150:intron | 35.0% |
| GGTTCGATCACTATTTAAGT+CGG | + | chr2_1:29002811-29002830 | Msa0204150:intron | 35.0% | |
| AGTTAACTCACCCTGAATTA+AGG | + | chr2_1:29002893-29002912 | Msa0204150:intron | 35.0% | |
| GTTAACTCACCCTGAATTAA+GGG | + | chr2_1:29002894-29002913 | Msa0204150:intron | 35.0% | |
| !! | AATGGGCAATTTTGAAAGGA+AGG | + | chr2_1:29002917-29002936 | Msa0204150:intron | 35.0% |
| CGCATATACTTGTAGACATT+AGG | + | chr2_1:29002993-29003012 | Msa0204150:intron | 35.0% | |
| ! | AAAGGTGTAGAATGTGAAGA+TGG | + | chr2_1:29003120-29003139 | Msa0204150:CDS | 35.0% |
| TATTGCTAGTTGTCACAACA+TGG | + | chr2_1:29003182-29003201 | Msa0204150:CDS | 35.0% | |
| ! | TTATGGCTTTGCCATTTCAT+CGG | - | chr2_1:29003591-29003610 | None:intergenic | 35.0% |
| TTAAGTCAGACATTATGACC+GGG | - | chr2_1:29003651-29003670 | None:intergenic | 35.0% | |
| GTTAAGTCAGACATTATGAC+CGG | - | chr2_1:29003652-29003671 | None:intergenic | 35.0% | |
| TTTATAGCTGATGCATTACG+AGG | + | chr2_1:29003884-29003903 | Msa0204150:CDS | 35.0% | |
| !! | CATAGAAGTATTGTTTGTGG+AGG | + | chr2_1:29004107-29004126 | Msa0204150:three_prime_UTR | 35.0% |
| TTGTTTGTGGAGGATCAAAA+TGG | + | chr2_1:29004117-29004136 | Msa0204150:three_prime_UTR | 35.0% | |
| GACTCCATGACTAAAGTTGA+TGG | - | chr2_1:29002206-29002225 | None:intergenic | 40.0% | |
| GTTCAATAGCTGTGTACTGA+CGG | + | chr2_1:29002365-29002384 | Msa0204150:intron | 40.0% | |
| CAGAAACAATACCTTGCTTG+TGG | - | chr2_1:29002687-29002706 | None:intergenic | 40.0% | |
| !!! | CACGCTGTCACTTTTAACAT+TGG | - | chr2_1:29002842-29002861 | None:intergenic | 40.0% |
| TCACCCTGAATTAAGGGAAT+GGG | + | chr2_1:29002900-29002919 | Msa0204150:intron | 40.0% | |
| TTGCCCATTCCCTTAATTCA+GGG | - | chr2_1:29002906-29002925 | None:intergenic | 40.0% | |
| ATTGCCCATTCCCTTAATTC+AGG | - | chr2_1:29002907-29002926 | None:intergenic | 40.0% | |
| ! | AGGGAATGGGCAATTTTGAA+AGG | + | chr2_1:29002913-29002932 | Msa0204150:intron | 40.0% |
| GCAGTTGAAGAAGCCTATAA+AGG | + | chr2_1:29003102-29003121 | Msa0204150:CDS | 40.0% | |
| ! | GTTGTCACAACATGGTTCTA+AGG | + | chr2_1:29003190-29003209 | Msa0204150:CDS | 40.0% |
| TGAAGTCACAGCAATAAGAG+AGG | + | chr2_1:29003236-29003255 | Msa0204150:CDS | 40.0% | |
| TATCCACCTTTCACGTGTTA+AGG | + | chr2_1:29003514-29003533 | Msa0204150:intron | 40.0% | |
| TCACAACCTTAACACGTGAA+AGG | - | chr2_1:29003523-29003542 | None:intergenic | 40.0% | |
| CACATACAAAGTGGAGATGT+CGG | + | chr2_1:29003618-29003637 | Msa0204150:intron | 40.0% | |
| ACATACAAAGTGGAGATGTC+GGG | + | chr2_1:29003619-29003638 | Msa0204150:intron | 40.0% | |
| ACTAGTTGAGCTACGACTTA+TGG | + | chr2_1:29003687-29003706 | Msa0204150:intron | 40.0% | |
| CTAGTTGAGCTACGACTTAT+GGG | + | chr2_1:29003688-29003707 | Msa0204150:intron | 40.0% | |
| TAAAAGAGCTGATGGCAATG+AGG | + | chr2_1:29003940-29003959 | Msa0204150:CDS | 40.0% | |
| GACTCCATGACTAAAGTTGA+TGG | - | chr2_1:29002206-29002225 | None:intergenic | 40.0% | |
| GTTCAATAGCTGTGTACTGA+CGG | + | chr2_1:29002365-29002384 | Msa0204150:intron | 40.0% | |
| CAGAAACAATACCTTGCTTG+TGG | - | chr2_1:29002687-29002706 | None:intergenic | 40.0% | |
| !!! | CACGCTGTCACTTTTAACAT+TGG | - | chr2_1:29002842-29002861 | None:intergenic | 40.0% |
| TCACCCTGAATTAAGGGAAT+GGG | + | chr2_1:29002900-29002919 | Msa0204150:intron | 40.0% | |
| TTGCCCATTCCCTTAATTCA+GGG | - | chr2_1:29002906-29002925 | None:intergenic | 40.0% | |
| ATTGCCCATTCCCTTAATTC+AGG | - | chr2_1:29002907-29002926 | None:intergenic | 40.0% | |
| ! | AGGGAATGGGCAATTTTGAA+AGG | + | chr2_1:29002913-29002932 | Msa0204150:intron | 40.0% |
| GCAGTTGAAGAAGCCTATAA+AGG | + | chr2_1:29003102-29003121 | Msa0204150:CDS | 40.0% | |
| ! | GTTGTCACAACATGGTTCTA+AGG | + | chr2_1:29003190-29003209 | Msa0204150:CDS | 40.0% |
| TGAAGTCACAGCAATAAGAG+AGG | + | chr2_1:29003236-29003255 | Msa0204150:CDS | 40.0% | |
| TATCCACCTTTCACGTGTTA+AGG | + | chr2_1:29003514-29003533 | Msa0204150:intron | 40.0% | |
| TCACAACCTTAACACGTGAA+AGG | - | chr2_1:29003523-29003542 | None:intergenic | 40.0% | |
| CACATACAAAGTGGAGATGT+CGG | + | chr2_1:29003618-29003637 | Msa0204150:intron | 40.0% | |
| ACATACAAAGTGGAGATGTC+GGG | + | chr2_1:29003619-29003638 | Msa0204150:intron | 40.0% | |
| ACTAGTTGAGCTACGACTTA+TGG | + | chr2_1:29003687-29003706 | Msa0204150:intron | 40.0% | |
| CTAGTTGAGCTACGACTTAT+GGG | + | chr2_1:29003688-29003707 | Msa0204150:intron | 40.0% | |
| TAAAAGAGCTGATGGCAATG+AGG | + | chr2_1:29003940-29003959 | Msa0204150:CDS | 40.0% | |
| CATCGTAGTGGTGCAAAACA+AGG | + | chr2_1:29002627-29002646 | Msa0204150:intron | 45.0% | |
| GTAGTGGTGCAAAACAAGGA+TGG | + | chr2_1:29002631-29002650 | Msa0204150:intron | 45.0% | |
| CTCACCCTGAATTAAGGGAA+TGG | + | chr2_1:29002899-29002918 | Msa0204150:intron | 45.0% | |
| GGTGTAGAATGTGAAGATGG+AGG | + | chr2_1:29003123-29003142 | Msa0204150:CDS | 45.0% | |
| TGTGAAGATGGAGGTCCATT+TGG | + | chr2_1:29003132-29003151 | Msa0204150:CDS | 45.0% | |
| TGACTTCAGCATGAGCAGAA+GGG | - | chr2_1:29003224-29003243 | None:intergenic | 45.0% | |
| GGATAGCACCAAAGCACATT+GGG | - | chr2_1:29003499-29003518 | None:intergenic | 45.0% | |
| TGGATAGCACCAAAGCACAT+TGG | - | chr2_1:29003500-29003519 | None:intergenic | 45.0% | |
| CAACCTTAACACGTGAAAGG+TGG | - | chr2_1:29003520-29003539 | None:intergenic | 45.0% | |
| CATACAAAGTGGAGATGTCG+GGG | + | chr2_1:29003620-29003639 | Msa0204150:intron | 45.0% | |
| GGTTTATGGAGCAAAAGCTG+AGG | + | chr2_1:29003835-29003854 | Msa0204150:CDS | 45.0% | |
| CATCGTAGTGGTGCAAAACA+AGG | + | chr2_1:29002627-29002646 | Msa0204150:intron | 45.0% | |
| GTAGTGGTGCAAAACAAGGA+TGG | + | chr2_1:29002631-29002650 | Msa0204150:intron | 45.0% | |
| CTCACCCTGAATTAAGGGAA+TGG | + | chr2_1:29002899-29002918 | Msa0204150:intron | 45.0% | |
| GGTGTAGAATGTGAAGATGG+AGG | + | chr2_1:29003123-29003142 | Msa0204150:CDS | 45.0% | |
| TGTGAAGATGGAGGTCCATT+TGG | + | chr2_1:29003132-29003151 | Msa0204150:CDS | 45.0% | |
| TGACTTCAGCATGAGCAGAA+GGG | - | chr2_1:29003224-29003243 | None:intergenic | 45.0% | |
| GGATAGCACCAAAGCACATT+GGG | - | chr2_1:29003499-29003518 | None:intergenic | 45.0% | |
| TGGATAGCACCAAAGCACAT+TGG | - | chr2_1:29003500-29003519 | None:intergenic | 45.0% | |
| CAACCTTAACACGTGAAAGG+TGG | - | chr2_1:29003520-29003539 | None:intergenic | 45.0% | |
| CATACAAAGTGGAGATGTCG+GGG | + | chr2_1:29003620-29003639 | Msa0204150:intron | 45.0% | |
| GGTTTATGGAGCAAAAGCTG+AGG | + | chr2_1:29003835-29003854 | Msa0204150:CDS | 45.0% | |
| !!! | ATTAATTTTATTATCAATTA+AGG | - | chr2_1:29003295-29003314 | None:intergenic | 5.0% |
| !!! | TATTTTTGTTATTTTTTTAT+TGG | + | chr2_1:29003719-29003738 | Msa0204150:intron | 5.0% |
| !!! | ATTTTTGTTATTTTTTTATT+GGG | + | chr2_1:29003720-29003739 | Msa0204150:intron | 5.0% |
| !!! | ATTAATTTTATTATCAATTA+AGG | - | chr2_1:29003295-29003314 | None:intergenic | 5.0% |
| !!! | TATTTTTGTTATTTTTTTAT+TGG | + | chr2_1:29003719-29003738 | Msa0204150:intron | 5.0% |
| !!! | ATTTTTGTTATTTTTTTATT+GGG | + | chr2_1:29003720-29003739 | Msa0204150:intron | 5.0% |
| !! | GCAGTAGCTTCTGCTTTTGC+TGG | + | chr2_1:29002661-29002680 | Msa0204150:CDS | 50.0% |
| AGGGTGAGTTAACTCACGCT+CGG | - | chr2_1:29002887-29002906 | None:intergenic | 50.0% | |
| GTGACTTCAGCATGAGCAGA+AGG | - | chr2_1:29003225-29003244 | None:intergenic | 50.0% | |
| GAACCATGCCCAATGTGCTT+TGG | + | chr2_1:29003488-29003507 | Msa0204150:intron | 50.0% | |
| GCTGAGGCAGCAATTGCAAT+TGG | + | chr2_1:29003851-29003870 | Msa0204150:CDS | 50.0% | |
| GCTGATGCATTACGAGGAAC+TGG | + | chr2_1:29003890-29003909 | Msa0204150:CDS | 50.0% | |
| !! | GCAGTAGCTTCTGCTTTTGC+TGG | + | chr2_1:29002661-29002680 | Msa0204150:CDS | 50.0% |
| AGGGTGAGTTAACTCACGCT+CGG | - | chr2_1:29002887-29002906 | None:intergenic | 50.0% | |
| GTGACTTCAGCATGAGCAGA+AGG | - | chr2_1:29003225-29003244 | None:intergenic | 50.0% | |
| GAACCATGCCCAATGTGCTT+TGG | + | chr2_1:29003488-29003507 | Msa0204150:intron | 50.0% | |
| GCTGAGGCAGCAATTGCAAT+TGG | + | chr2_1:29003851-29003870 | Msa0204150:CDS | 50.0% | |
| GCTGATGCATTACGAGGAAC+TGG | + | chr2_1:29003890-29003909 | Msa0204150:CDS | 50.0% | |
| ! | GCTTTTGCTGGCCACAAGCA+AGG | + | chr2_1:29002673-29002692 | Msa0204150:CDS | 55.0% |
| GCACCAAAGCACATTGGGCA+TGG | - | chr2_1:29003494-29003513 | None:intergenic | 55.0% | |
| ! | GCTTTTGCTGGCCACAAGCA+AGG | + | chr2_1:29002673-29002692 | Msa0204150:CDS | 55.0% |
| GCACCAAAGCACATTGGGCA+TGG | - | chr2_1:29003494-29003513 | None:intergenic | 55.0% | |
| GGAGATGTCGGGGTTCGACC+CGG | + | chr2_1:29003630-29003649 | Msa0204150:intron | 65.0% | |
| GGAGATGTCGGGGTTCGACC+CGG | + | chr2_1:29003630-29003649 | Msa0204150:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 29002082 | 29004321 | 29002082 | ID=Msa0204150;Name=Msa0204150 |
| chr2_1 | mRNA | 29002082 | 29004321 | 29002082 | ID=Msa0204150-mRNA-1;Parent=Msa0204150;Name=Msa0204150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=55|0.75|1|1|0.5|0.4|5|268|146 |
| chr2_1 | exon | 29002082 | 29002137 | 29002082 | ID=Msa0204150-mRNA-1:exon:10429;Parent=Msa0204150-mRNA-1 |
| chr2_1 | exon | 29002635 | 29002694 | 29002635 | ID=Msa0204150-mRNA-1:exon:10430;Parent=Msa0204150-mRNA-1 |
| chr2_1 | exon | 29003067 | 29003257 | 29003067 | ID=Msa0204150-mRNA-1:exon:10431;Parent=Msa0204150-mRNA-1 |
| chr2_1 | exon | 29003830 | 29004187 | 29003830 | ID=Msa0204150-mRNA-1:exon:10432;Parent=Msa0204150-mRNA-1 |
| chr2_1 | exon | 29004223 | 29004321 | 29004223 | ID=Msa0204150-mRNA-1:exon:10433;Parent=Msa0204150-mRNA-1 |
| chr2_1 | five_prime_UTR | 29002082 | 29002136 | 29002082 | ID=Msa0204150-mRNA-1:five_prime_utr;Parent=Msa0204150-mRNA-1 |
| chr2_1 | CDS | 29002137 | 29002137 | 29002137 | ID=Msa0204150-mRNA-1:cds;Parent=Msa0204150-mRNA-1 |
| chr2_1 | CDS | 29002635 | 29002694 | 29002635 | ID=Msa0204150-mRNA-1:cds;Parent=Msa0204150-mRNA-1 |
| chr2_1 | CDS | 29003067 | 29003257 | 29003067 | ID=Msa0204150-mRNA-1:cds;Parent=Msa0204150-mRNA-1 |
| chr2_1 | CDS | 29003830 | 29004018 | 29003830 | ID=Msa0204150-mRNA-1:cds;Parent=Msa0204150-mRNA-1 |
| chr2_1 | three_prime_UTR | 29004019 | 29004187 | 29004019 | ID=Msa0204150-mRNA-1:three_prime_utr;Parent=Msa0204150-mRNA-1 |
| chr2_1 | three_prime_UTR | 29004223 | 29004321 | 29004223 | ID=Msa0204150-mRNA-1:three_prime_utr;Parent=Msa0204150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
