Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405510 | XP_024631349.1 | 80.110 | 181 | 1 | 1 | 1 | 146 | 1 | 181 | 2.33e-93 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405510 | sp|Q94BU8|GSDA_ARATH | 64.444 | 180 | 29 | 1 | 2 | 146 | 6 | 185 | 2.81e-76 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405510 | B7FGY2 | 80.110 | 181 | 1 | 1 | 1 | 146 | 1 | 181 | 1.11e-93 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0837320 | Msa1405510 | 0.805986 | 1.024299e-49 | -8.615850e-47 |
| Msa0204150 | Msa1405510 | 0.925651 | 1.373542e-90 | -8.615850e-47 |
| Msa1087890 | Msa1405510 | 0.800694 | 1.277943e-48 | -8.615850e-47 |
| Msa0285900 | Msa1405510 | 0.968936 | 2.161791e-129 | -8.615850e-47 |
| Msa0312640 | Msa1405510 | 0.800293 | 1.542539e-48 | -8.615850e-47 |
| Msa0324820 | Msa1405510 | 0.956207 | 5.082982e-114 | -8.615850e-47 |
| Msa1158620 | Msa1405510 | 0.810704 | 1.009892e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405510 | MtrunA17_Chr2g0302351 | 79.558 | 181 | 2 | 1 | 1 | 146 | 5 | 185 | 7.70e-97 | 276 |
| Msa1405510 | MtrunA17_Chr4g0069501 | 69.061 | 181 | 21 | 1 | 1 | 146 | 6 | 186 | 1.82e-83 | 243 |
| Msa1405510 | MtrunA17_Chr1g0191001 | 59.748 | 159 | 29 | 1 | 23 | 146 | 11 | 169 | 6.80e-58 | 177 |
| Msa1405510 | MtrunA17_Chr1g0190991 | 46.835 | 158 | 43 | 3 | 22 | 144 | 24 | 175 | 1.40e-37 | 126 |
| Msa1405510 | MtrunA17_Chr1g0190971 | 46.497 | 157 | 42 | 4 | 23 | 143 | 12 | 162 | 2.98e-34 | 117 |
| Msa1405510 | MtrunA17_Chr3g0077671 | 44.371 | 151 | 39 | 3 | 15 | 143 | 69 | 196 | 4.67e-29 | 107 |
| Msa1405510 | MtrunA17_Chr1g0190981 | 66.129 | 62 | 15 | 1 | 23 | 84 | 18 | 73 | 1.21e-22 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405510 | AT5G28050.1 | 64.444 | 180 | 29 | 1 | 2 | 146 | 6 | 185 | 2.86e-77 | 227 |
| Msa1405510 | AT5G28050.2 | 63.889 | 180 | 30 | 1 | 2 | 146 | 25 | 204 | 9.77e-77 | 227 |
| Msa1405510 | AT5G28050.3 | 64.444 | 180 | 29 | 1 | 2 | 146 | 111 | 290 | 1.38e-76 | 229 |
| Msa1405510 | AT3G05300.1 | 39.130 | 115 | 32 | 2 | 66 | 145 | 1 | 112 | 3.54e-17 | 72.8 |
Find 34 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACATTCTACACCTTTAT+AGG | 0.164004 | tig0023139:+58817 | None:intergenic |
| TTTATGTAGAGGTTGGTTTA+TGG | 0.196375 | tig0023139:-58134 | Msa1405510:intron |
| AAACACTTCTTCAGCAATTA+TGG | 0.210407 | tig0023139:+57992 | None:intergenic |
| TATTGTGTTATTAGCTATAA+AGG | 0.266607 | tig0023139:-58879 | Msa1405510:intron |
| TTGTTTGTGGAGGATCAAAA+TGG | 0.374746 | tig0023139:-57838 | Msa1405510:three_prime_UTR |
| GCTGAGGCAGCAATTGCAAT+TGG | 0.405341 | tig0023139:-58104 | Msa1405510:CDS |
| AATATTTGAATCATAGAAGT+TGG | 0.414352 | tig0023139:-57719 | Msa1405510:three_prime_UTR |
| GCAGTTGAAGAAGCCTATAA+AGG | 0.442236 | tig0023139:-58830 | Msa1405510:CDS |
| GTTGTCACAACATGGTTCTA+AGG | 0.442612 | tig0023139:-58742 | Msa1405510:CDS |
| GCTGATGCATTACGAGGAAC+TGG | 0.446579 | tig0023139:-58065 | Msa1405510:CDS |
| TATATACTTGTATTCACATA+AGG | 0.466768 | tig0023139:-61745 | Msa1405510:five_prime_UTR |
| TGTGAAGATGGAGGTCCATT+TGG | 0.477425 | tig0023139:-58800 | Msa1405510:CDS |
| AGAGTTAATCACAATGACTT+AGG | 0.491851 | tig0023139:+57921 | None:intergenic |
| ATATTTGAATCATAGAAGTT+GGG | 0.495533 | tig0023139:-57718 | Msa1405510:three_prime_UTR |
| AACTCTTATTGATATAGAAA+AGG | 0.500839 | tig0023139:+57695 | None:intergenic |
| AAAACTATAACAGCACCAAA+TGG | 0.503753 | tig0023139:+58785 | None:intergenic |
| GTGACTTCAGCATGAGCAGA+AGG | 0.538349 | tig0023139:+58710 | None:intergenic |
| CTTCCTAGTGGTGCAAAACA+AGG | 0.541378 | tig0023139:-61278 | Msa1405510:intron |
| AAAGGTGTAGAATGTGAAGA+TGG | 0.546002 | tig0023139:-58812 | Msa1405510:CDS |
| TCTCATAGAAGTATTGTTTG+TGG | 0.550760 | tig0023139:-57851 | Msa1405510:three_prime_UTR |
| TTGGAGATTAAAAGAGCTGA+TGG | 0.558816 | tig0023139:-58023 | Msa1405510:CDS |
| CTAGTGGTGCAAAACAAGGA+TGG | 0.573459 | tig0023139:-61274 | Msa1405510:intron |
| TATTAGAAATATACAATACA+AGG | 0.575825 | tig0023139:+57772 | None:intergenic |
| TATTGCTAGTTGTCACAACA+TGG | 0.593501 | tig0023139:-58750 | Msa1405510:CDS |
| TACTTCTATGAGACACATGA+TGG | 0.594487 | tig0023139:+57861 | None:intergenic |
| CATAGAAGTATTGTTTGTGG+AGG | 0.597271 | tig0023139:-57848 | Msa1405510:three_prime_UTR |
| TTTATAGCTGATGCATTACG+AGG | 0.630911 | tig0023139:-58071 | Msa1405510:CDS |
| AGAAGTGTTTGAGAAAACAA+AGG | 0.641403 | tig0023139:-57979 | Msa1405510:CDS |
| TAAAAGAGCTGATGGCAATG+AGG | 0.644473 | tig0023139:-58015 | Msa1405510:CDS |
| TGACTTCAGCATGAGCAGAA+GGG | 0.653823 | tig0023139:+58711 | None:intergenic |
| GGTGTAGAATGTGAAGATGG+AGG | 0.657918 | tig0023139:-58809 | Msa1405510:CDS |
| GAGAAACAATACCTTGCTTG+TGG | 0.666329 | tig0023139:+61221 | None:intergenic |
| GGTTTATGGAGCAAAAGCTG+AGG | 0.686000 | tig0023139:-58120 | Msa1405510:CDS |
| TGAAGTCACAGCAATAAGAG+AGG | 0.698117 | tig0023139:-58696 | Msa1405510:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTAAACTGATTATTA+TGG | - | tig0023139:58098-58117 | Msa1405510:CDS | 10.0% |
| !!! | ATGTTTTTTTTTTTTTTTGT+TGG | + | tig0023139:60385-60404 | None:intergenic | 10.0% |
| !!! | TTATTTCTTTTAGTTAATAT+TGG | - | tig0023139:60846-60865 | Msa1405510:intron | 10.0% |
| !! | AACTATTCAACATTTAATAT+TGG | + | tig0023139:57930-57949 | None:intergenic | 15.0% |
| !!! | TTGAGAAACAATTTTTTATA+GGG | + | tig0023139:58735-58754 | None:intergenic | 15.0% |
| !! | TTATGAATATCAGTATATTA+TGG | - | tig0023139:58759-58778 | Msa1405510:CDS | 15.0% |
| !! | AAGTACAATTGATAAATAAA+TGG | - | tig0023139:58816-58835 | Msa1405510:CDS | 15.0% |
| !!! | ATTTCTTTTTAACATACTTT+TGG | - | tig0023139:61247-61266 | Msa1405510:CDS | 15.0% |
| !!! | TAGTATTATTTTTTATGTAG+AGG | - | tig0023139:61290-61309 | Msa1405510:intron | 15.0% |
| !! | TATTAGAAATATACAATACA+AGG | + | tig0023139:61666-61685 | None:intergenic | 15.0% |
| !!! | AATAGCATGTTTAATTTTTA+AGG | - | tig0023139:61682-61701 | Msa1405510:intron | 15.0% |
| !! | TAAGAACAAATAAGAAAGAA+TGG | + | tig0023139:58660-58679 | None:intergenic | 20.0% |
| !!! | GTTGAGAAACAATTTTTTAT+AGG | + | tig0023139:58736-58755 | None:intergenic | 20.0% |
| !!! | TTAAACCATTTCTTTTTTGA+AGG | + | tig0023139:58857-58876 | None:intergenic | 20.0% |
| !!! | AATATCTTATTTTTATGCGA+GGG | - | tig0023139:58920-58939 | Msa1405510:intron | 20.0% |
| !! | TAACTCATAAGAAGATAAAA+TGG | - | tig0023139:59404-59423 | Msa1405510:intron | 20.0% |
| !! | AACTCATAAGAAGATAAAAT+GGG | - | tig0023139:59405-59424 | Msa1405510:intron | 20.0% |
| !!! | ATCAATTGGTTTTGAAAAAA+TGG | - | tig0023139:59456-59475 | Msa1405510:intron | 20.0% |
| !!! | TCAATTGGTTTTGAAAAAAT+GGG | - | tig0023139:59457-59476 | Msa1405510:intron | 20.0% |
| !!! | TATTTTTTAGAGTTGCATTT+TGG | - | tig0023139:59643-59662 | Msa1405510:intron | 20.0% |
| !!! | ATTTTTTAGAGTTGCATTTT+GGG | - | tig0023139:59644-59663 | Msa1405510:intron | 20.0% |
| !!! | ATTGCAATTATTTTCAATCA+TGG | + | tig0023139:60228-60247 | None:intergenic | 20.0% |
| !!! | CGTTACACAATAATAAATTT+TGG | + | tig0023139:60478-60497 | None:intergenic | 20.0% |
| !!! | TTGAAATGATATTTTCATCT+GGG | - | tig0023139:60520-60539 | Msa1405510:intron | 20.0% |
| !!! | TATTGTGTTATTAGCTATAA+AGG | - | tig0023139:60556-60575 | Msa1405510:intron | 20.0% |
| !!! | CTGCTTTTCTTAAAAATTTA+TGG | + | tig0023139:60589-60608 | None:intergenic | 20.0% |
| !! | AAAAAAAATGCATAGGAATT+TGG | + | tig0023139:61052-61071 | None:intergenic | 20.0% |
| !!! | ATTATTTTTTATGTAGAGGT+TGG | - | tig0023139:61294-61313 | Msa1405510:intron | 20.0% |
| !! | AATATTTGAATCATAGAAGT+TGG | - | tig0023139:61716-61735 | Msa1405510:five_prime_UTR | 20.0% |
| !! | ATATTTGAATCATAGAAGTT+GGG | - | tig0023139:61717-61736 | Msa1405510:five_prime_UTR | 20.0% |
| !! | AACTCTTATTGATATAGAAA+AGG | + | tig0023139:61743-61762 | None:intergenic | 20.0% |
| ! | ATTGACATCAACTTTAGTTA+TGG | - | tig0023139:57805-57824 | Msa1405510:three_prime_UTR | 25.0% |
| !! | AAAAAAATCAGCTTTAGTCA+TGG | - | tig0023139:57862-57881 | Msa1405510:three_prime_UTR | 25.0% |
| ! | AGTTAATGTAGTACTATGTA+TGG | - | tig0023139:57946-57965 | Msa1405510:exon | 25.0% |
| !!! | TTTATTTTTGATCTTCCTAG+TGG | - | tig0023139:58145-58164 | Msa1405510:intron | 25.0% |
| ! | TCAAAAAACTTTCTTTCCTA+TGG | + | tig0023139:58356-58375 | None:intergenic | 25.0% |
| !! | TCTACTTTCTTCTCAATTTT+GGG | + | tig0023139:58463-58482 | None:intergenic | 25.0% |
| !!! | TGCGAATATAATTTGCTATA+TGG | - | tig0023139:58607-58626 | Msa1405510:intron | 25.0% |
| ! | TTCTTCCTTCAAAAAAGAAA+TGG | - | tig0023139:58849-58868 | Msa1405510:CDS | 25.0% |
| !!! | GAATATCTTATTTTTATGCG+AGG | - | tig0023139:58919-58938 | Msa1405510:intron | 25.0% |
| !!! | GAAAGTTAGTTTTTAACCAT+TGG | - | tig0023139:59233-59252 | Msa1405510:intron | 25.0% |
| ! | ATCTTCTTATGAGTTAAACA+TGG | + | tig0023139:59400-59419 | None:intergenic | 25.0% |
| !!! | TTTTTTAGAGTTGCATTTTG+GGG | - | tig0023139:59645-59664 | Msa1405510:intron | 25.0% |
| ! | GTTATTATTGATAGAGAAAC+TGG | - | tig0023139:59821-59840 | Msa1405510:intron | 25.0% |
| !! | TTATGGATTTTGTGACTATA+AGG | - | tig0023139:59855-59874 | Msa1405510:intron | 25.0% |
| !!! | GAAAGTTAGTTTTTAACCAT+TGG | + | tig0023139:59233-59252 | None:intergenic | 25.0% |
| ! | TAAAAACTAACTTTCCCATA+TGG | - | tig0023139:60151-60170 | Msa1405510:intron | 25.0% |
| ! | ATAACTATAATAGTAGCTCT+AGG | - | tig0023139:60258-60277 | Msa1405510:intron | 25.0% |
| ! | TATAGTGTATGTTTCAATTG+AGG | - | tig0023139:60282-60301 | Msa1405510:intron | 25.0% |
| !! | TTTAGAGTTCAACAAAATCA+CGG | + | tig0023139:60332-60351 | None:intergenic | 25.0% |
| ! | TCGTTCGATCTTAAATTAAT+CGG | + | tig0023139:60455-60474 | None:intergenic | 25.0% |
| !! | CTTGAAATGATATTTTCATC+TGG | - | tig0023139:60519-60538 | Msa1405510:intron | 25.0% |
| !!! | ACATAATGCTATCATTTTTC+AGG | - | tig0023139:60912-60931 | Msa1405510:intron | 25.0% |
| !!! | TCCTATGCATTTTTTTTTCT+TGG | - | tig0023139:61055-61074 | Msa1405510:intron | 25.0% |
| ! | ACCAAGAAAAAAAAATGCAT+AGG | + | tig0023139:61059-61078 | None:intergenic | 25.0% |
| !!! | TTCTTGGTTGATAGATTAAA+TGG | - | tig0023139:61071-61090 | Msa1405510:intron | 25.0% |
| ! | TTTATATGTGTGTGTTATGA+TGG | + | tig0023139:61102-61121 | None:intergenic | 25.0% |
| ! | ACAAAAATGCCAAAATTGTT+AGG | + | tig0023139:61153-61172 | None:intergenic | 25.0% |
| !!! | ATTTTATCAGAAAGCACAAT+TGG | - | tig0023139:61393-61412 | Msa1405510:intron | 25.0% |
| !!! | AGCATGTTTAATTTTTAAGG+AGG | - | tig0023139:61685-61704 | Msa1405510:intron | 25.0% |
| AAAAGAGTAAGTGATCGAAT+TGG | - | tig0023139:57743-57762 | Msa1405510:three_prime_UTR | 30.0% | |
| TTAGTCATGGAAGAAATTAG+TGG | - | tig0023139:57875-57894 | Msa1405510:three_prime_UTR | 30.0% | |
| !!! | GAACATATTTTTTACACCGT+CGG | + | tig0023139:57987-58006 | None:intergenic | 30.0% |
| GATGAAAGAAAGAGTGAAAT+TGG | + | tig0023139:58260-58279 | None:intergenic | 30.0% | |
| CTTTCATCATCACATTATGT+AGG | - | tig0023139:58272-58291 | Msa1405510:intron | 30.0% | |
| !!! | AAGGAAAGATTGCTTTTTTG+TGG | - | tig0023139:58414-58433 | Msa1405510:intron | 30.0% |
| !!! | AGGAAAGATTGCTTTTTTGT+GGG | - | tig0023139:58415-58434 | Msa1405510:intron | 30.0% |
| ! | CTCTACTTTCTTCTCAATTT+TGG | + | tig0023139:58464-58483 | None:intergenic | 30.0% |
| GAGATGATTGTATGATTGTT+TGG | + | tig0023139:59011-59030 | None:intergenic | 30.0% | |
| GTTAAAAACTAACTTTCCCA+TGG | + | tig0023139:60149-60168 | None:intergenic | 30.0% | |
| GGAGAAAAATCTAATGTTGA+GGG | + | tig0023139:59289-59308 | None:intergenic | 30.0% | |
| TGGAGAAAAATCTAATGTTG+AGG | + | tig0023139:59290-59309 | None:intergenic | 30.0% | |
| TTCTTATGAGTTAAACATGG+TGG | + | tig0023139:59397-59416 | None:intergenic | 30.0% | |
| TAGCTTAGACTTTGATCAAT+TGG | - | tig0023139:59442-59461 | Msa1405510:intron | 30.0% | |
| CAGAGACAGTGATATATATA+AGG | + | tig0023139:59502-59521 | None:intergenic | 30.0% | |
| TCAAGTCATGAAGTTGAATA+TGG | - | tig0023139:59542-59561 | Msa1405510:intron | 30.0% | |
| AGTTGAATATGGATTTAGAG+TGG | - | tig0023139:59553-59572 | Msa1405510:intron | 30.0% | |
| ! | GTTGAATATGGATTTAGAGT+GGG | - | tig0023139:59554-59573 | Msa1405510:intron | 30.0% |
| AAAAAAACCAACCCAAGAAT+TGG | + | tig0023139:59613-59632 | None:intergenic | 30.0% | |
| !!! | ATTTTGGGGTTTTGTTTTCA+AGG | - | tig0023139:59659-59678 | Msa1405510:intron | 30.0% |
| GAATAAATGAATAAACCAGC+TGG | + | tig0023139:59773-59792 | None:intergenic | 30.0% | |
| ! | TCACAAAATCCATAACCTTT+TGG | + | tig0023139:59850-59869 | None:intergenic | 30.0% |
| TATGTTGTGGTTTCTTCATA+TGG | - | tig0023139:59953-59972 | Msa1405510:intron | 30.0% | |
| TTTAACCATTGGATCAAGTA+GGG | + | tig0023139:60135-60154 | None:intergenic | 30.0% | |
| ! | TTTTAACCATTGGATCAAGT+AGG | + | tig0023139:59243-59262 | None:intergenic | 30.0% |
| TTCACATTCTACACCTTTAT+AGG | + | tig0023139:60621-60640 | None:intergenic | 30.0% | |
| AAAACTATAACAGCACCAAA+TGG | + | tig0023139:60653-60672 | None:intergenic | 30.0% | |
| !! | TTTATGTAGAGGTTGGTTTA+TGG | - | tig0023139:61301-61320 | Msa1405510:intron | 30.0% |
| AAACACTTCTTCAGCAATTA+TGG | + | tig0023139:61446-61465 | None:intergenic | 30.0% | |
| !! | AGAAGTGTTTGAGAAAACAA+AGG | - | tig0023139:61456-61475 | Msa1405510:intron | 30.0% |
| AGAGTTAATCACAATGACTT+AGG | + | tig0023139:61517-61536 | None:intergenic | 30.0% | |
| !! | TCTCATAGAAGTATTGTTTG+TGG | - | tig0023139:61584-61603 | Msa1405510:intron | 30.0% |
| ATCATCACATTATGTAGGCT+TGG | - | tig0023139:58277-58296 | Msa1405510:intron | 35.0% | |
| ACATTATGTAGGCTTGGAAA+CGG | - | tig0023139:58283-58302 | Msa1405510:intron | 35.0% | |
| TGGTACCAAACAATACCTAA+AGG | + | tig0023139:58310-58329 | None:intergenic | 35.0% | |
| ATCTTATTGGAACCAAACAG+GGG | + | tig0023139:58390-58409 | None:intergenic | 35.0% | |
| CATCTTATTGGAACCAAACA+GGG | + | tig0023139:58391-58410 | None:intergenic | 35.0% | |
| TCATCTTATTGGAACCAAAC+AGG | + | tig0023139:58392-58411 | None:intergenic | 35.0% | |
| ! | TGTTTGGTTCCAATAAGATG+AGG | - | tig0023139:58391-58410 | Msa1405510:intron | 35.0% |
| TCTTTCCTTCCTCATCTTAT+TGG | + | tig0023139:58403-58422 | None:intergenic | 35.0% | |
| ! | ACTTTCTTCTCAATTTTGGG+CGG | + | tig0023139:58460-58479 | None:intergenic | 35.0% |
| ATTGAGAAGAAAGTAGAGAG+AGG | - | tig0023139:58466-58485 | Msa1405510:intron | 35.0% | |
| TTGAGAAGAAAGTAGAGAGA+GGG | - | tig0023139:58467-58486 | Msa1405510:intron | 35.0% | |
| GAAAGTGAAAAGAAAGTGAG+AGG | + | tig0023139:58981-59000 | None:intergenic | 35.0% | |
| GTATGAGGAAAGAATGTTGA+AGG | + | tig0023139:59065-59084 | None:intergenic | 35.0% | |
| AGGTAAGGAAAGATAGTATG+AGG | + | tig0023139:59080-59099 | None:intergenic | 35.0% | |
| TGTTTGGATCACAAGAGAAA+AGG | + | tig0023139:59100-59119 | None:intergenic | 35.0% | |
| ! | AAGCACTAAAGTCCTTGTTT+AGG | - | tig0023139:59156-59175 | Msa1405510:intron | 35.0% |
| ATCTTAGTGAAGCCTAAACA+AGG | + | tig0023139:59171-59190 | None:intergenic | 35.0% | |
| TTGTTTAGGCTTCACTAAGA+TGG | - | tig0023139:59170-59189 | Msa1405510:intron | 35.0% | |
| AAAACTAACTTTCCCATGGT+GGG | + | tig0023139:59226-59245 | None:intergenic | 35.0% | |
| AAAAACTAACTTTCCCATGG+TGG | + | tig0023139:59227-59246 | None:intergenic | 35.0% | |
| ! | GTGTTTTTCACTTGATCCAA+TGG | + | tig0023139:59252-59271 | None:intergenic | 35.0% |
| ATGATTCTGTTTGGAAAGAG+AGG | + | tig0023139:59366-59385 | None:intergenic | 35.0% | |
| GTGGTAGTTATGATTCTGTT+TGG | + | tig0023139:59375-59394 | None:intergenic | 35.0% | |
| TTATGAGTTAAACATGGTGG+TGG | + | tig0023139:59394-59413 | None:intergenic | 35.0% | |
| AGATTCGAGTCATTTGATGT+TGG | - | tig0023139:59585-59604 | Msa1405510:intron | 35.0% | |
| TTGATGTTGGATCCAATTCT+TGG | - | tig0023139:59598-59617 | Msa1405510:intron | 35.0% | |
| TGATGTTGGATCCAATTCTT+GGG | - | tig0023139:59599-59618 | Msa1405510:intron | 35.0% | |
| TTCAAGGATGTTGAAGATGA+TGG | - | tig0023139:59675-59694 | Msa1405510:intron | 35.0% | |
| TTCAATAATCATGTGTGCTC+TGG | - | tig0023139:59724-59743 | Msa1405510:intron | 35.0% | |
| TAGAGAAACTGGAAACCAAA+AGG | - | tig0023139:59832-59851 | Msa1405510:intron | 35.0% | |
| AACTGGAAACCAAAAGGTTA+TGG | - | tig0023139:59838-59857 | Msa1405510:intron | 35.0% | |
| GCTTACTTCAATAGAGTTTG+TGG | + | tig0023139:59927-59946 | None:intergenic | 35.0% | |
| ! | AGTAAGCATCGTATATGTTG+TGG | - | tig0023139:59940-59959 | Msa1405510:intron | 35.0% |
| TTTCTTCATATGGAAGCTGA+TGG | - | tig0023139:59963-59982 | Msa1405510:intron | 35.0% | |
| AAACTAACTTTCCCATATGG+TGG | - | tig0023139:60154-60173 | Msa1405510:intron | 35.0% | |
| AACTAACTTTCCCATATGGT+GGG | - | tig0023139:60155-60174 | Msa1405510:intron | 35.0% | |
| ! | GCTAATTTTTCCCACCATAT+GGG | + | tig0023139:60168-60187 | None:intergenic | 35.0% |
| TGACCTCAAATTAACAGTTG+AGG | + | tig0023139:60417-60436 | None:intergenic | 35.0% | |
| CGCATATACATGTAGACATT+AGG | - | tig0023139:60496-60515 | Msa1405510:intron | 35.0% | |
| ! | AAAGGTGTAGAATGTGAAGA+TGG | - | tig0023139:60623-60642 | Msa1405510:intron | 35.0% |
| TATTGCTAGTTGTCACAACA+TGG | - | tig0023139:60685-60704 | Msa1405510:intron | 35.0% | |
| AGAGAGGTTGGATTATAAAC+AGG | - | tig0023139:60755-60774 | Msa1405510:intron | 35.0% | |
| TTACAACCTTAACACGTGAA+AGG | + | tig0023139:61026-61045 | None:intergenic | 35.0% | |
| TTTATAGCTGATGCATTACG+AGG | - | tig0023139:61364-61383 | Msa1405510:intron | 35.0% | |
| TTGGAGATTAAAAGAGCTGA+TGG | - | tig0023139:61412-61431 | Msa1405510:intron | 35.0% | |
| TACTTCTATGAGACACATGA+TGG | + | tig0023139:61577-61596 | None:intergenic | 35.0% | |
| !! | CATAGAAGTATTGTTTGTGG+AGG | - | tig0023139:61587-61606 | Msa1405510:intron | 35.0% |
| TTGTTTGTGGAGGATCAAAA+TGG | - | tig0023139:61597-61616 | Msa1405510:intron | 35.0% | |
| GAGAAACAATACCTTGCTTG+TGG | + | tig0023139:58217-58236 | None:intergenic | 40.0% | |
| ! | ACGGTCCTTTAGGTATTGTT+TGG | - | tig0023139:58302-58321 | Msa1405510:intron | 40.0% |
| ! | TTGTTTGGTACCACTGATTG+TGG | - | tig0023139:58317-58336 | Msa1405510:intron | 40.0% |
| ATCTTTCCTTCCACAATCAG+TGG | + | tig0023139:58330-58349 | None:intergenic | 40.0% | |
| TGGAAGGAAAGATACTCCAT+AGG | - | tig0023139:58337-58356 | Msa1405510:intron | 40.0% | |
| TGGTTCCAATAAGATGAGGA+AGG | - | tig0023139:58395-58414 | Msa1405510:intron | 40.0% | |
| !!! | GCGGAAGGTATTTTGTTATG+GGG | + | tig0023139:58441-58460 | None:intergenic | 40.0% |
| !!! | GGCGGAAGGTATTTTGTTAT+GGG | + | tig0023139:58442-58461 | None:intergenic | 40.0% |
| ! | AGAGAGAGGGTCTTCATTTT+AGG | - | tig0023139:58480-58499 | Msa1405510:intron | 40.0% |
| ATGTGCACAATCCAATGCAA+GGG | + | tig0023139:58520-58539 | None:intergenic | 40.0% | |
| AATGTGCACAATCCAATGCA+AGG | + | tig0023139:58521-58540 | None:intergenic | 40.0% | |
| GAAAGTGAGTAGAAAGTGAG+TGG | + | tig0023139:59039-59058 | None:intergenic | 40.0% | |
| GGATCACAAGAGAAAAGGTA+AGG | + | tig0023139:59095-59114 | None:intergenic | 40.0% | |
| GTGATCCAAACAAAGCCTTA+AGG | - | tig0023139:59108-59127 | Msa1405510:intron | 40.0% | |
| GGACTTTAGTGCTTCAATCT+TGG | + | tig0023139:59150-59169 | None:intergenic | 40.0% | |
| ! | TAAGATGGTAACGTTTAGCC+TGG | - | tig0023139:59185-59204 | Msa1405510:intron | 40.0% |
| ! | AAGATGGTAACGTTTAGCCT+GGG | - | tig0023139:59186-59205 | Msa1405510:intron | 40.0% |
| ! | AAGGCTAATTTTTCCCACCA+TGG | - | tig0023139:59210-59229 | Msa1405510:intron | 40.0% |
| ! | AGGCTAATTTTTCCCACCAT+GGG | - | tig0023139:59211-59230 | Msa1405510:intron | 40.0% |
| TGGTTGAGGTTGAAGAGAAA+TGG | + | tig0023139:59310-59329 | None:intergenic | 40.0% | |
| GAAAGTGAGAAATCTGGTTG+AGG | + | tig0023139:59324-59343 | None:intergenic | 40.0% | |
| GAGAGAGAAAGTGAGAAATC+TGG | + | tig0023139:59330-59349 | None:intergenic | 40.0% | |
| ! | GAAGATGATGGTGATGAATG+TGG | - | tig0023139:59687-59706 | Msa1405510:intron | 40.0% |
| ! | GAACTCTAGCACTGAAAAGA+TGG | - | tig0023139:59985-60004 | Msa1405510:intron | 40.0% |
| ! | TCTAGCACTGAAAAGATGGA+TGG | - | tig0023139:59989-60008 | Msa1405510:intron | 40.0% |
| GTGATAAGAAGCCACAGTTA+CGG | - | tig0023139:60016-60035 | Msa1405510:intron | 40.0% | |
| TGAGGATAAGGCACAAATGA+AGG | - | tig0023139:60040-60059 | Msa1405510:intron | 40.0% | |
| GAGGATAAGGCACAAATGAA+GGG | - | tig0023139:60041-60060 | Msa1405510:intron | 40.0% | |
| AGGATAAGGCACAAATGAAG+GGG | - | tig0023139:60042-60061 | Msa1405510:intron | 40.0% | |
| ATGTTCCCTACTTGATCCAA+TGG | - | tig0023139:60127-60146 | Msa1405510:intron | 40.0% | |
| ! | GGCTAATTTTTCCCACCATA+TGG | + | tig0023139:60169-60188 | None:intergenic | 40.0% |
| AAACTCCACCCACTAAGATA+AGG | - | tig0023139:60200-60219 | Msa1405510:intron | 40.0% | |
| AACTCCACCCACTAAGATAA+GGG | - | tig0023139:60201-60220 | Msa1405510:intron | 40.0% | |
| TCATGGACCCTTATCTTAGT+GGG | + | tig0023139:60211-60230 | None:intergenic | 40.0% | |
| ATCATGGACCCTTATCTTAG+TGG | + | tig0023139:60212-60231 | None:intergenic | 40.0% | |
| ! | CGACCTCAACTGTTAATTTG+AGG | - | tig0023139:60411-60430 | Msa1405510:intron | 40.0% |
| GCAGTTGAAGAAGCCTATAA+AGG | - | tig0023139:60605-60624 | Msa1405510:intron | 40.0% | |
| ! | GTTGTCACAACATGGTTCTA+AGG | - | tig0023139:60693-60712 | Msa1405510:intron | 40.0% |
| TGAAGTCACAGCAATAAGAG+AGG | - | tig0023139:60739-60758 | Msa1405510:intron | 40.0% | |
| TATCCACCTTTCACGTGTTA+AGG | - | tig0023139:61017-61036 | Msa1405510:intron | 40.0% | |
| ! | CATATAAAGTACCTCGACTC+CGG | - | tig0023139:61114-61133 | Msa1405510:intron | 40.0% |
| ! | GACGTCTGACCTAACAATTT+TGG | - | tig0023139:61141-61160 | Msa1405510:intron | 40.0% |
| ! | GCATTTTTGTCAGTTGAGCT+AGG | - | tig0023139:61163-61182 | Msa1405510:intron | 40.0% |
| TAAAAGAGCTGATGGCAATG+AGG | - | tig0023139:61420-61439 | Msa1405510:intron | 40.0% | |
| GTTCAATAGCTGTGTACCGA+CGG | - | tig0023139:57968-57987 | Msa1405510:CDS | 45.0% | |
| CTTCCTAGTGGTGCAAAACA+AGG | - | tig0023139:58157-58176 | Msa1405510:intron | 45.0% | |
| !!! | CATCCTTGTTTTGCACCACT+AGG | + | tig0023139:58163-58182 | None:intergenic | 45.0% |
| CTAGTGGTGCAAAACAAGGA+TGG | - | tig0023139:58161-58180 | Msa1405510:intron | 45.0% | |
| ! | TTGGTACCACTGATTGTGGA+AGG | - | tig0023139:58321-58340 | Msa1405510:intron | 45.0% |
| !!! | GGGCGGAAGGTATTTTGTTA+TGG | + | tig0023139:58443-58462 | None:intergenic | 45.0% |
| ! | TCTTCTCAATTTTGGGCGGA+AGG | + | tig0023139:58456-58475 | None:intergenic | 45.0% |
| !! | AATCCAATGCAAGGGTGTCA+AGG | + | tig0023139:58512-58531 | None:intergenic | 45.0% |
| !! | GACGACCTTAAGGCTTTGTT+TGG | + | tig0023139:59116-59135 | None:intergenic | 45.0% |
| AAAGCCTTAAGGTCGTCTTG+AGG | - | tig0023139:59119-59138 | Msa1405510:intron | 45.0% | |
| !! | GGGAAAAATTAGCCTTTCCC+AGG | + | tig0023139:60175-60194 | None:intergenic | 45.0% |
| TCTGTTTGGAAAGAGAGGAG+AGG | + | tig0023139:59361-59380 | None:intergenic | 45.0% | |
| GTTGGATCCAATTCTTGGGT+TGG | - | tig0023139:59603-59622 | Msa1405510:intron | 45.0% | |
| !! | CATGTGTGCTCTGGATTTTC+TGG | - | tig0023139:59733-59752 | Msa1405510:intron | 45.0% |
| GAATTAACTGTCACACCAGC+TGG | - | tig0023139:59755-59774 | Msa1405510:intron | 45.0% | |
| ! | AGCACTGAAAAGATGGATGG+AGG | - | tig0023139:59992-60011 | Msa1405510:intron | 45.0% |
| CTTATCCTCATCCGTAACTG+TGG | + | tig0023139:60030-60049 | None:intergenic | 45.0% | |
| CACAGTTACGGATGAGGATA+AGG | - | tig0023139:60028-60047 | Msa1405510:intron | 45.0% | |
| !! | GGGAAAAATTAGCCTTTCCC+AGG | - | tig0023139:60175-60194 | Msa1405510:intron | 45.0% |
| GGTGTAGAATGTGAAGATGG+AGG | - | tig0023139:60626-60645 | Msa1405510:intron | 45.0% | |
| TGTGAAGATGGAGGTCCATT+TGG | - | tig0023139:60635-60654 | Msa1405510:intron | 45.0% | |
| TGACTTCAGCATGAGCAGAA+GGG | + | tig0023139:60727-60746 | None:intergenic | 45.0% | |
| GTCACAGCAATAAGAGAGGT+TGG | - | tig0023139:60743-60762 | Msa1405510:intron | 45.0% | |
| GGATAGCACCAAAGCACATT+GGG | + | tig0023139:61002-61021 | None:intergenic | 45.0% | |
| TGGATAGCACCAAAGCACAT+TGG | + | tig0023139:61003-61022 | None:intergenic | 45.0% | |
| CAACCTTAACACGTGAAAGG+TGG | + | tig0023139:61023-61042 | None:intergenic | 45.0% | |
| GGTTTATGGAGCAAAAGCTG+AGG | - | tig0023139:61315-61334 | Msa1405510:intron | 45.0% | |
| !!! | ATTAATTTTATTATCAATTA+AGG | + | tig0023139:60798-60817 | None:intergenic | 5.0% |
| !!! | ATTTATTTGTTATTTTTATT+TGG | - | tig0023139:61200-61219 | Msa1405510:intron | 5.0% |
| !! | GCAGTAGCTTCTGCTTTTGC+TGG | - | tig0023139:58191-58210 | Msa1405510:intron | 50.0% |
| AGGCTTGGAAACGGTCCTTT+AGG | - | tig0023139:58292-58311 | Msa1405510:intron | 50.0% | |
| AAAACCGTGCTTCCCCTGTT+TGG | - | tig0023139:58375-58394 | Msa1405510:intron | 50.0% | |
| AGACCTTGACACCCTTGCAT+TGG | - | tig0023139:58506-58525 | Msa1405510:intron | 50.0% | |
| GGTAACGTTTAGCCTGGGAA+AGG | - | tig0023139:59191-59210 | Msa1405510:intron | 50.0% | |
| GTTTGGAAAGAGAGGAGAGG+AGG | + | tig0023139:59358-59377 | None:intergenic | 50.0% | |
| AGAAGCCACAGTTACGGATG+AGG | - | tig0023139:60022-60041 | Msa1405510:intron | 50.0% | |
| AGGCACAAATGAAGGGGAGA+AGG | - | tig0023139:60048-60067 | Msa1405510:intron | 50.0% | |
| GGCACAAATGAAGGGGAGAA+GGG | - | tig0023139:60049-60068 | Msa1405510:intron | 50.0% | |
| ACAAATGAAGGGGAGAAGGG+TGG | - | tig0023139:60052-60071 | Msa1405510:intron | 50.0% | |
| !! | GGTGGTGATGGAAGATGATG+TGG | - | tig0023139:60070-60089 | Msa1405510:intron | 50.0% |
| ! | TAGTGGGTGGAGTTTAGCCT+GGG | + | tig0023139:60195-60214 | None:intergenic | 50.0% |
| ! | TTAGTGGGTGGAGTTTAGCC+TGG | + | tig0023139:60196-60215 | None:intergenic | 50.0% |
| TGGACCCTTATCTTAGTGGG+TGG | + | tig0023139:60208-60227 | None:intergenic | 50.0% | |
| GTGACTTCAGCATGAGCAGA+AGG | + | tig0023139:60728-60747 | None:intergenic | 50.0% | |
| GAACCATGCCCAATGTGCTT+TGG | - | tig0023139:60991-61010 | Msa1405510:intron | 50.0% | |
| GTTAGGTCAGACGTCATGAC+CGG | + | tig0023139:61136-61155 | None:intergenic | 50.0% | |
| GCTGAGGCAGCAATTGCAAT+TGG | - | tig0023139:61331-61350 | Msa1405510:intron | 50.0% | |
| GCTGATGCATTACGAGGAAC+TGG | - | tig0023139:61370-61389 | Msa1405510:intron | 50.0% | |
| ! | GCTTTTGCTGGCCACAAGCA+AGG | - | tig0023139:58203-58222 | Msa1405510:intron | 55.0% |
| GGAACCAAACAGGGGAAGCA+CGG | + | tig0023139:58382-58401 | None:intergenic | 55.0% | |
| CCAGCCTCAAGACGACCTTA+AGG | + | tig0023139:59126-59145 | None:intergenic | 55.0% | |
| CCTTAAGGTCGTCTTGAGGC+TGG | - | tig0023139:59123-59142 | Msa1405510:intron | 55.0% | |
| TGGAAAGAGAGGAGAGGAGG+AGG | + | tig0023139:59355-59374 | None:intergenic | 55.0% | |
| GGTGGAGTTTAGCCTGGGAA+AGG | + | tig0023139:60190-60209 | None:intergenic | 55.0% | |
| GCACCAAAGCACATTGGGCA+TGG | + | tig0023139:60997-61016 | None:intergenic | 55.0% | |
| GAAGGGGAGAAGGGTGGTGA+TGG | - | tig0023139:60058-60077 | Msa1405510:intron | 60.0% | |
| AGACGTCATGACCGGAGTCG+AGG | + | tig0023139:61128-61147 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023139 | gene | 57693 | 61764 | 57693 | ID=Msa1405510;Name=Msa1405510 |
| tig0023139 | mRNA | 57693 | 61764 | 57693 | ID=Msa1405510-mRNA-1;Parent=Msa1405510;Name=Msa1405510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=55|0.66|1|1|0.66|0.75|4|266|146 |
| tig0023139 | exon | 57693 | 58147 | 57693 | ID=Msa1405510-mRNA-1:exon:24151;Parent=Msa1405510-mRNA-1 |
| tig0023139 | exon | 58697 | 58887 | 58697 | ID=Msa1405510-mRNA-1:exon:24150;Parent=Msa1405510-mRNA-1 |
| tig0023139 | exon | 61233 | 61292 | 61233 | ID=Msa1405510-mRNA-1:exon:24149;Parent=Msa1405510-mRNA-1 |
| tig0023139 | exon | 61709 | 61764 | 61709 | ID=Msa1405510-mRNA-1:exon:24148;Parent=Msa1405510-mRNA-1 |
| tig0023139 | five_prime_UTR | 61710 | 61764 | 61710 | ID=Msa1405510-mRNA-1:five_prime_utr;Parent=Msa1405510-mRNA-1 |
| tig0023139 | CDS | 61709 | 61709 | 61709 | ID=Msa1405510-mRNA-1:cds;Parent=Msa1405510-mRNA-1 |
| tig0023139 | CDS | 61233 | 61292 | 61233 | ID=Msa1405510-mRNA-1:cds;Parent=Msa1405510-mRNA-1 |
| tig0023139 | CDS | 58697 | 58887 | 58697 | ID=Msa1405510-mRNA-1:cds;Parent=Msa1405510-mRNA-1 |
| tig0023139 | CDS | 57959 | 58147 | 57959 | ID=Msa1405510-mRNA-1:cds;Parent=Msa1405510-mRNA-1 |
| tig0023139 | three_prime_UTR | 57693 | 57958 | 57693 | ID=Msa1405510-mRNA-1:three_prime_utr;Parent=Msa1405510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
