AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0286650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0286650 MtrunA17_Chr2g0303511 94.444 666 30 2 1 665 1 660 0.0 1239
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0286650 AT5G58130.1 49.356 233 88 5 3 233 2 206 6.82e-61 217

Find 161 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATCCTTTCAAGTTCT+TGG 0.115429 2_3:+28215544 None:intergenic
ACTGAACCAGAACATGATTT+TGG 0.178047 2_3:-28214699 Msa0286650:CDS
GGTTCTTTAGCCGTTTGTTC+TGG 0.189946 2_3:+28214135 None:intergenic
GAGGACCAACTTTAATATTC+TGG 0.211960 2_3:+28215928 None:intergenic
GGCTATCACATAAAATTAAT+TGG 0.273476 2_3:+28213676 None:intergenic
AGAATATTCGTCGGAGGATT+AGG 0.284833 2_3:-28218844 Msa0286650:CDS
TCGAAAACTGTTCGAATCAT+TGG 0.286085 2_3:-28218797 Msa0286650:CDS
ATTGCTTTCACTTTCCGATT+TGG 0.294913 2_3:+28214800 None:intergenic
CATGATCCTTTCAAGTTCTT+GGG 0.298802 2_3:+28215545 None:intergenic
TTGCTTTCACTTTCCGATTT+GGG 0.304504 2_3:+28214801 None:intergenic
GTCACTGATGGCTTCAACTT+AGG 0.323626 2_3:-28214042 Msa0286650:CDS
GTATCGGAAGGTTCGCTCTC+TGG 0.324588 2_3:+28214483 None:intergenic
TTCGACTCATAAGGAGGATT+TGG 0.331025 2_3:-28217750 Msa0286650:CDS
CGATCTGCAAATGTTGAAAT+AGG 0.332142 2_3:-28213928 Msa0286650:CDS
ATGTTGGCATTGCAGTATAA+TGG 0.333790 2_3:-28217893 Msa0286650:intron
GGAACCGGCAGGGTACAAAA+TGG 0.340357 2_3:+28214113 None:intergenic
TGGTACCTTACTGAAAAGTT+TGG 0.345165 2_3:+28218690 None:intergenic
TAACGAACCGTTCTTAATCT+TGG 0.345426 2_3:+28217662 None:intergenic
AACAACAAAAGGCTTCATTA+AGG 0.347021 2_3:+28213555 None:intergenic
CTTCTAGATGGGCTGGGATC+TGG 0.347707 2_3:-28214732 Msa0286650:CDS
AAAAGTTGTGAAAGGCTAAA+TGG 0.349273 2_3:+28214174 None:intergenic
TTGTAGTACATGTCCGTTCC+AGG 0.355630 2_3:-28213600 Msa0286650:three_prime_UTR
TCTACAAAGCGTCTTGCATT+AGG 0.359623 2_3:+28217716 None:intergenic
TCGAATGTCATCGGTGGTTA+CGG 0.365656 2_3:+28218816 None:intergenic
GGGAGTCTGCCAAAGTTTCA+TGG 0.367925 2_3:-28214677 Msa0286650:CDS
GTCCGTTCCAGGGCAAGTTT+TGG 0.371902 2_3:-28213589 Msa0286650:three_prime_UTR
ACGATCAAGGTAATGCTCTT+TGG 0.378575 2_3:+28217832 None:intergenic
CATGGTGGCAAAAGAAATCT+TGG 0.379483 2_3:-28214224 Msa0286650:CDS
CAGATCCCAGCCCATCTAGA+AGG 0.381344 2_3:+28214733 None:intergenic
ATGAGTGGGGAAGCAGAAAT+TGG 0.383018 2_3:-28215804 Msa0286650:CDS
CTCTTCTATCACTCTTGTAT+TGG 0.388942 2_3:+28214383 None:intergenic
ATATTGAGAGGCTTTGCATC+TGG 0.390081 2_3:+28217692 None:intergenic
AAGCGAAAATCAGACAATAA+TGG 0.391857 2_3:+28213497 None:intergenic
ATTCTATTGTTAACAACAAA+AGG 0.394769 2_3:+28213544 None:intergenic
TCACTGATGGCTTCAACTTA+GGG 0.397187 2_3:-28214041 Msa0286650:CDS
AGGATAAGTTATCTATGAAT+GGG 0.402189 2_3:-28215851 Msa0286650:CDS
GTTATCACTTGTTTATATGT+AGG 0.404324 2_3:+28214303 None:intergenic
GTTCTTTAGCCGTTTGTTCT+GGG 0.404623 2_3:+28214136 None:intergenic
AAAATGCAGACCCTTCTAGA+TGG 0.405551 2_3:-28214744 Msa0286650:CDS
GTTTCTAACACCAAGCATCT+TGG 0.410072 2_3:-28215714 Msa0286650:CDS
GTTGAGAAAATCGTTGAAAC+AGG 0.410291 2_3:-28213961 Msa0286650:CDS
AAAGCTAAAGCCGCTGTTAG+TGG 0.410378 2_3:-28213856 Msa0286650:CDS
GAGAAAATCACTTCCCAAAT+CGG 0.411171 2_3:-28214814 Msa0286650:CDS
TCCATACCCTTCAGTGGAAC+TGG 0.413684 2_3:-28215969 Msa0286650:CDS
GACTCCCCAAAATCATGTTC+TGG 0.414624 2_3:+28214693 None:intergenic
AAGGATAAGTTATCTATGAA+TGG 0.419930 2_3:-28215852 Msa0286650:CDS
ACAATCCTGCTTCTGCTGTA+TGG 0.419940 2_3:+28213787 None:intergenic
AACGAACCGTTCTTAATCTT+GGG 0.421343 2_3:+28217663 None:intergenic
CGAAAACTGTTCGAATCATT+GGG 0.426176 2_3:-28218796 Msa0286650:CDS
AAAGGCTTCATTAAGGAAGC+TGG 0.431128 2_3:+28213562 None:intergenic
TGTTGGCATTGCAGTATAAT+GGG 0.433137 2_3:-28217892 Msa0286650:intron
TTCTTTGATCACTTGTGTAT+TGG 0.434621 2_3:+28214425 None:intergenic
TCCAGTGAGTGCAAGCATAA+TGG 0.439320 2_3:-28214093 Msa0286650:CDS
TCTATCACTCTTGTATTGGT+AGG 0.441895 2_3:+28214387 None:intergenic
CTTCTGAGACCATGAAACTT+TGG 0.442387 2_3:+28214668 None:intergenic
TATCGGAAGGTTCGCTCTCT+GGG 0.442426 2_3:+28214484 None:intergenic
GCAGACCCTTCTAGATGGGC+TGG 0.447267 2_3:-28214739 Msa0286650:CDS
ATGCTTGCACTCACTGGAAC+CGG 0.452300 2_3:+28214098 None:intergenic
AATCGGAAAGTGAAAGCAAT+GGG 0.455057 2_3:-28214797 Msa0286650:CDS
TAACCGGCACAGGTGTTTCA+TGG 0.455965 2_3:-28214242 Msa0286650:CDS
TGAAAGGATCATGGAAAGTC+AGG 0.458480 2_3:-28215535 Msa0286650:intron
GTAAGCGAGACTGCGACCTT+TGG 0.460541 2_3:+28218744 None:intergenic
TTCTTCTATCACTTGTGCAT+TGG 0.461928 2_3:+28214341 None:intergenic
TTCTGATGTTTCGACTCATA+AGG 0.462618 2_3:-28217759 Msa0286650:CDS
GAACAAACAGCTTGCAAGCA+TGG 0.468667 2_3:-28218896 Msa0286650:exon
GCTGATAAGAATACTGTTGA+TGG 0.470238 2_3:-28214069 Msa0286650:CDS
ATGTTATGCTGAGTTTCAGC+AGG 0.470768 2_3:+28214276 None:intergenic
CTTACTGAAAAGTTTGGAAA+GGG 0.474134 2_3:+28218696 None:intergenic
AAACGTGGTGAGAAGAAGTA+AGG 0.477728 2_3:-28213820 Msa0286650:exon
ACCATTATGCTTGCACTCAC+TGG 0.478496 2_3:+28214092 None:intergenic
GTGCTTCTTTCCAAGATGCT+TGG 0.478695 2_3:+28215704 None:intergenic
ACATTTGCAGATCGTTCCCT+TGG 0.485077 2_3:+28213937 None:intergenic
TGTATTGGTAGGTTGAGATT+CGG 0.494596 2_3:+28214440 None:intergenic
TAGAATCAGCAAGGAAATCA+AGG 0.497334 2_3:+28218722 None:intergenic
TATGAATGGGGAAACTGAAA+GGG 0.498569 2_3:-28215838 Msa0286650:CDS
CTATGAATGGGGAAACTGAA+AGG 0.499445 2_3:-28215839 Msa0286650:CDS
CCACCATGAAACACCTGTGC+CGG 0.499567 2_3:+28214239 None:intergenic
CATTAGTTTCCCAGAACAAA+CGG 0.500069 2_3:-28214145 Msa0286650:CDS
TGGAGAGAACTTGTTGGTAA+AGG 0.503479 2_3:-28214639 Msa0286650:CDS
TATGTAGGTTGAGCTTCAGC+AGG 0.503686 2_3:+28214318 None:intergenic
ACCAGTTCCACTGAAGGGTA+TGG 0.509579 2_3:+28215968 None:intergenic
ACACCAGGTGTAATGTTATG+AGG 0.512009 2_3:-28213721 Msa0286650:three_prime_UTR
GAACCGGCAGGGTACAAAAT+GGG 0.513709 2_3:+28214114 None:intergenic
AATTTCCATACAGCAGAAGC+AGG 0.514220 2_3:-28213792 Msa0286650:three_prime_UTR
GTGCTGATTCTTTGAAAGAG+TGG 0.514505 2_3:-28213882 Msa0286650:CDS
AGTTTCCAGAATATTAAAGT+TGG 0.515602 2_3:-28215933 Msa0286650:CDS
CCAAGAACTTGAAAGGATCA+TGG 0.517434 2_3:-28215544 Msa0286650:CDS
TCTATCACTTGTGCATTGGT+AGG 0.517571 2_3:+28214345 None:intergenic
AATGGGTGTGTGTGGAAAGG+TGG 0.524128 2_3:-28217875 Msa0286650:CDS
TTGATCACTTGTGTATTGGT+AGG 0.526944 2_3:+28214429 None:intergenic
TGGAAAGCTGAAACTTGAAA+AGG 0.537493 2_3:-28217855 Msa0286650:CDS
CAGACCCTTCTAGATGGGCT+GGG 0.539526 2_3:-28214738 Msa0286650:CDS
TCTTCGTGGAGAGAACTTGT+TGG 0.539823 2_3:-28214645 Msa0286650:CDS
TTGCACTCACTGGAACCGGC+AGG 0.540369 2_3:+28214102 None:intergenic
TGCTTACCAGTTCCACTGAA+GGG 0.542059 2_3:+28215963 None:intergenic
GGGAAAAGTTATCTATGAGT+GGG 0.542933 2_3:-28215818 Msa0286650:CDS
AGTTTCATCGTTCGTAGAAG+AGG 0.543105 2_3:+28214530 None:intergenic
CCAGCATGCTCACTATTCTC+TGG 0.543567 2_3:+28214009 None:intergenic
AAATCATGTTCTGGTTCAGT+AGG 0.544746 2_3:+28214702 None:intergenic
TCATAAGGAGGATTTGGTAA+AGG 0.545638 2_3:-28217744 Msa0286650:CDS
TACCAAAACTTGCCCTGGAA+CGG 0.550191 2_3:+28213587 None:intergenic
ACTGCGACCTTTGGTACGAA+TGG 0.551310 2_3:+28218753 None:intergenic
CCTTACTGAAAAGTTTGGAA+AGG 0.551504 2_3:+28218695 None:intergenic
CATGGTCTCAGAAGTCTTCG+TGG 0.551938 2_3:-28214659 Msa0286650:CDS
CTACTGCGACTTGGGAGAAG+AGG 0.552922 2_3:-28218925 None:intergenic
GAACGATGAAACTGAAGACA+TGG 0.555760 2_3:-28214520 Msa0286650:CDS
TGGATTACCAAAACTTGCCC+TGG 0.555837 2_3:+28213582 None:intergenic
TGTTCTGGGAAACTAATGTC+AGG 0.556549 2_3:+28214150 None:intergenic
AGTGGGGAAGCAGAAATTGG+TGG 0.558375 2_3:-28215801 Msa0286650:CDS
TTGGTAGGTTGAGATTCGGC+AGG 0.560339 2_3:+28214444 None:intergenic
CCACCTCATAACATTACACC+TGG 0.562454 2_3:+28213718 None:intergenic
CAGGGACCCAAGAACTTGAA+AGG 0.565422 2_3:-28215551 Msa0286650:CDS
GTGCTTACCAGTTCCACTGA+AGG 0.566725 2_3:+28215962 None:intergenic
TAAAACAAATATTGCAGAGG+AGG 0.567809 2_3:-28214889 Msa0286650:CDS
TTGCTTTGCTGTTATACACC+AGG 0.567944 2_3:-28213736 Msa0286650:three_prime_UTR
AAAGAAATCTTGGACACAGT+TGG 0.568326 2_3:-28214214 Msa0286650:CDS
AAATGCAGACCCTTCTAGAT+GGG 0.570793 2_3:-28214743 Msa0286650:CDS
GAAGATCAGCAAAACTCTGA+TGG 0.574919 2_3:-28214564 Msa0286650:CDS
AAATCGTTGAAACAGGTCCA+AGG 0.575163 2_3:-28213954 Msa0286650:CDS
CTTGGGAAGTAAATATTGAG+AGG 0.582694 2_3:+28217680 None:intergenic
TGAGTCGAAACATCAGAAGC+TGG 0.586957 2_3:+28217764 None:intergenic
TGTCAGGCAAAAGTTGTGAA+AGG 0.589877 2_3:+28214166 None:intergenic
AGGGAAAAGTTATCTATGAG+TGG 0.590439 2_3:-28215819 Msa0286650:CDS
TGCAGTATAATGGGTGTGTG+TGG 0.590559 2_3:-28217883 Msa0286650:intron
TGCACTCACTGGAACCGGCA+GGG 0.590957 2_3:+28214103 None:intergenic
TTACTTCCCAAGATTAAGAA+CGG 0.593171 2_3:-28217669 Msa0286650:intron
CTCGAAACCATTCGTACCAA+AGG 0.593811 2_3:-28218760 Msa0286650:CDS
AGATCCCAGCCCATCTAGAA+GGG 0.593994 2_3:+28214734 None:intergenic
TACTGCGACTTGGGAGAAGA+GGG 0.603894 2_3:-28218924 None:intergenic
TTGGTAGGCAGAGATTCAGC+AGG 0.605263 2_3:+28214360 None:intergenic
AGAGAACTTGTTGGTAAAGG+AGG 0.605841 2_3:-28214636 Msa0286650:CDS
CACTGATGGCTTCAACTTAG+GGG 0.606207 2_3:-28214040 Msa0286650:CDS
TGTAGTACATGTCCGTTCCA+GGG 0.607946 2_3:-28213599 Msa0286650:three_prime_UTR
GAGCAAGAGCGATTCTAGCA+AGG 0.611834 2_3:-28214844 Msa0286650:CDS
AGAGCAGTGAGAATATTCGT+CGG 0.618455 2_3:-28218853 Msa0286650:CDS
AAATCGGAAAGTGAAAGCAA+TGG 0.618747 2_3:-28214798 Msa0286650:CDS
GTTGATGGAACTGTCACTGA+TGG 0.620677 2_3:-28214054 Msa0286650:CDS
GTAGATAGTGCAACAGATGA+TGG 0.626664 2_3:-28215636 Msa0286650:CDS
GGATAAGTTATCTATGAATG+GGG 0.627287 2_3:-28215850 Msa0286650:CDS
TGATGTTTCGACTCATAAGG+AGG 0.628597 2_3:-28217756 Msa0286650:CDS
TCTTCAGCAGAATCAAACTT+CGG 0.629095 2_3:+28214582 None:intergenic
AATCGTTGAAACAGGTCCAA+GGG 0.632924 2_3:-28213953 Msa0286650:CDS
AAAGGGATTTAGAATCAGCA+AGG 0.632981 2_3:+28218713 None:intergenic
AAAACAAAGCAGCTTTGACA+GGG 0.636062 2_3:-28215569 Msa0286650:CDS
TATAATGGGTGTGTGTGGAA+AGG 0.637628 2_3:-28217878 Msa0286650:CDS
GTTAAATCCATACCCTTCAG+TGG 0.639356 2_3:-28215975 Msa0286650:CDS
CCAGAGAATAGTGAGCATGC+TGG 0.642844 2_3:-28214009 Msa0286650:CDS
AACGTGGTGAGAAGAAGTAA+GGG 0.648256 2_3:-28213819 Msa0286650:exon
GGAAAAGTTATCTATGAGTG+GGG 0.649648 2_3:-28215817 Msa0286650:CDS
CAATAAAACAAATATTGCAG+AGG 0.654109 2_3:-28214892 Msa0286650:CDS
TTTGAGTGATCCACTAACAG+CGG 0.654682 2_3:+28213846 None:intergenic
GTTGCGTCTAGTACCCCTGT+AGG 0.660935 2_3:-28214774 Msa0286650:CDS
AAACTTCGGCAATATGAGAG+AGG 0.671206 2_3:+28214596 None:intergenic
CCAGGTGTAATGTTATGAGG+TGG 0.685775 2_3:-28213718 Msa0286650:three_prime_UTR
GCAGTGAGAATATTCGTCGG+AGG 0.687502 2_3:-28218850 Msa0286650:CDS
CCGGCACAGGTGTTTCATGG+TGG 0.696551 2_3:-28214239 Msa0286650:CDS
GTCGAAACATCAGAAGCTGG+TGG 0.697024 2_3:+28217767 None:intergenic
CAAACAGCTTGCAAGCATGG+AGG 0.703630 2_3:-28218893 Msa0286650:exon
GGATCACTCAAAAGAAAACG+TGG 0.708325 2_3:-28213835 Msa0286650:CDS
TAGAATTGATGAAAACCACA+TGG 0.725385 2_3:+28213655 None:intergenic
ATCGGAAAGTGAAAGCAATG+GGG 0.734526 2_3:-28214796 Msa0286650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAATAAAAATGTGA+CGG + chr2_3:28214006-28214025 None:intergenic 10.0%
!! AGAAAATAGAATTAATTTAA+GGG + chr2_3:28214442-28214461 None:intergenic 10.0%
!! AAGAAAATAGAATTAATTTA+AGG + chr2_3:28214443-28214462 None:intergenic 10.0%
!! TTTAAAAGTAATGATTATGT+TGG - chr2_3:28214474-28214493 Msa0286650:CDS 15.0%
!! AAATAAATAAATGAGTAAAC+AGG + chr2_3:28214756-28214775 None:intergenic 15.0%
!!! ATTTATTTTGTTATTCGTTA+CGG + chr2_3:28215470-28215489 None:intergenic 15.0%
!! AATAAATTTACTTAATCTGA+AGG - chr2_3:28215483-28215502 Msa0286650:intron 15.0%
!! ATAAATTTACTTAATCTGAA+GGG - chr2_3:28215484-28215503 Msa0286650:intron 15.0%
!!! TTTTTTTCTCAACAAATTAA+GGG + chr2_3:28215978-28215997 None:intergenic 15.0%
!!! ATTTTTTTCTCAACAAATTA+AGG + chr2_3:28215979-28215998 None:intergenic 15.0%
!! AAATCTGTATAATTAAACAA+TGG + chr2_3:28216310-28216329 None:intergenic 15.0%
!!! CGTATCATTTATTTTTTATT+TGG - chr2_3:28216878-28216897 Msa0286650:intron 15.0%
!!! TCATTTATTTTTTATTTGGA+AGG - chr2_3:28216882-28216901 Msa0286650:intron 15.0%
!!! CATTTATTTTTTATTTGGAA+GGG - chr2_3:28216883-28216902 Msa0286650:intron 15.0%
!!! GTTCAAATAAATATAGTTTT+AGG - chr2_3:28217170-28217189 Msa0286650:intron 15.0%
!! ATTGTGTAAAAAATTAAATG+AGG + chr2_3:28218758-28218777 None:intergenic 15.0%
!!! TTTTGTTTTATTTCTTTTGT+TGG - chr2_3:28218912-28218931 Msa0286650:five_prime_UTR 15.0%
!! TAGAATTAATTTAAGGGTTT+AGG + chr2_3:28214436-28214455 None:intergenic 20.0%
!!! TTTATTGTTTTTGCTATTTG+TGG - chr2_3:28214796-28214815 Msa0286650:CDS 20.0%
!! TGTTAACTTAATCAAAATCA+AGG + chr2_3:28215217-28215236 None:intergenic 20.0%
!! GTACACAAAATTTAGAAAAT+AGG - chr2_3:28215259-28215278 Msa0286650:intron 20.0%
!! CAAAATTTAGAAAATAGGAA+AGG - chr2_3:28215264-28215283 Msa0286650:intron 20.0%
!!! TTTATTTTGTTATTCGTTAC+GGG + chr2_3:28215469-28215488 None:intergenic 20.0%
!! TAAATTTACTTAATCTGAAG+GGG - chr2_3:28215485-28215504 Msa0286650:intron 20.0%
!! TTGATTACAAAAGTCTATTT+AGG - chr2_3:28216101-28216120 Msa0286650:intron 20.0%
!! TTTGTATACAAAACAAAACT+AGG + chr2_3:28217143-28217162 None:intergenic 20.0%
!!! GATTACTTTTATCAAAGAAT+AGG - chr2_3:28217419-28217438 Msa0286650:intron 20.0%
!! ATTCTATTGTTAACAACAAA+AGG + chr2_3:28218842-28218861 None:intergenic 20.0%
! TAGTTAAAACAACAGCTTAT+AGG - chr2_3:28213950-28213969 Msa0286650:CDS 25.0%
! ATATGAATTAAGAGTCAGTT+TGG - chr2_3:28214222-28214241 Msa0286650:CDS 25.0%
!! GCATAAGTTTTTATAGCTTA+TGG - chr2_3:28214372-28214391 Msa0286650:CDS 25.0%
!! TTAAGTTGTTTATCCAAAGA+GGG - chr2_3:28214410-28214429 Msa0286650:CDS 25.0%
!!! ATTCTTTTTTCAAACGATCA+AGG + chr2_3:28214567-28214586 None:intergenic 25.0%
! TTGATCGTTTGAAAAAAGAA+TGG - chr2_3:28214566-28214585 Msa0286650:CDS 25.0%
! TGATCGTTTGAAAAAAGAAT+GGG - chr2_3:28214567-28214586 Msa0286650:CDS 25.0%
! AATGAGTAAACAGGTTATAA+TGG + chr2_3:28214747-28214766 None:intergenic 25.0%
!! CTTTTATATTGTGATGAGAT+AGG - chr2_3:28214843-28214862 Msa0286650:CDS 25.0%
!!! AGAATGATTTTGGAATGATT+AGG - chr2_3:28215030-28215049 Msa0286650:intron 25.0%
!!! GAATGATTTTGGAATGATTA+GGG - chr2_3:28215031-28215050 Msa0286650:intron 25.0%
! TGTTATCTAACCATAATTCT+CGG + chr2_3:28215161-28215180 None:intergenic 25.0%
! GAATTATGGTTAGATAACAT+AGG - chr2_3:28215162-28215181 Msa0286650:intron 25.0%
!!! TTATTTTGTTATTCGTTACG+GGG + chr2_3:28215468-28215487 None:intergenic 25.0%
! TTGCATTGCATAATATAATC+AGG - chr2_3:28215513-28215532 Msa0286650:intron 25.0%
! TTAGTTACATTTCCTGAATA+AGG + chr2_3:28215921-28215940 None:intergenic 25.0%
!! GTATAATGTCATTTGAAAAG+TGG + chr2_3:28216018-28216037 None:intergenic 25.0%
! ACACTTGGTTGATTAATTAA+GGG + chr2_3:28216059-28216078 None:intergenic 25.0%
! AGTATATTAAGAGAAGTAGA+TGG + chr2_3:28216161-28216180 None:intergenic 25.0%
! AAATTGTAGTGTTTGTGAAA+AGG - chr2_3:28216188-28216207 Msa0286650:intron 25.0%
! AATTGTAGTGTTTGTGAAAA+GGG - chr2_3:28216189-28216208 Msa0286650:intron 25.0%
! AGTTTCCAGAATATTAAAGT+TGG - chr2_3:28216450-28216469 Msa0286650:intron 25.0%
!!! TTATCCTTTTTTGCGATAAA+AGG + chr2_3:28216519-28216538 None:intergenic 25.0%
! AAGGATAAGTTATCTATGAA+TGG - chr2_3:28216531-28216550 Msa0286650:intron 25.0%
! AGGATAAGTTATCTATGAAT+GGG - chr2_3:28216532-28216551 Msa0286650:intron 25.0%
!!! TTATTTTTTATTTGGAAGGG+AGG - chr2_3:28216886-28216905 Msa0286650:intron 25.0%
!! ATCTATGTAACTGTGATTTT+TGG - chr2_3:28217453-28217472 Msa0286650:intron 25.0%
!!! CTCTGCAATATTTGTTTTAT+TGG + chr2_3:28217493-28217512 None:intergenic 25.0%
! CAATAAAACAAATATTGCAG+AGG - chr2_3:28217491-28217510 Msa0286650:intron 25.0%
! GTTATCACTTGTTTATATGT+AGG + chr2_3:28218083-28218102 None:intergenic 25.0%
! GGCTATCACATAAAATTAAT+TGG + chr2_3:28218710-28218729 None:intergenic 25.0%
CTTACTGAAAAGTTTGGAAA+GGG + chr2_3:28213690-28213709 None:intergenic 30.0%
TTAAGTGAAGTGAGAAAGAT+TGG + chr2_3:28213716-28213735 None:intergenic 30.0%
!! CTTGTTTTCATAAGCTGTTT+AGG - chr2_3:28213922-28213941 Msa0286650:CDS 30.0%
! ATACATGTGACTTTAGAAGT+TGG - chr2_3:28214036-28214055 Msa0286650:CDS 30.0%
!!! TGGTAACGATTTTGATTGAT+TGG - chr2_3:28214056-28214075 Msa0286650:CDS 30.0%
ATACGAATTAAGACTCAGTT+TGG - chr2_3:28214109-28214128 Msa0286650:CDS 30.0%
TACATTGTCAAAACAGCATA+AGG + chr2_3:28214203-28214222 None:intergenic 30.0%
! GTTAAGTTGTTTATCCAAAG+AGG - chr2_3:28214409-28214428 Msa0286650:CDS 30.0%
TTACTTCCCAAGATTAAGAA+CGG - chr2_3:28214714-28214733 Msa0286650:CDS 30.0%
ATATTGTGATGAGATAGGTT+TGG - chr2_3:28214848-28214867 Msa0286650:CDS 30.0%
TGATATATTGCAGGTATTTG+CGG - chr2_3:28214904-28214923 Msa0286650:intron 30.0%
GCGGTTAAATATCAATGATA+CGG - chr2_3:28214923-28214942 Msa0286650:intron 30.0%
TTATGGATAGTAGTTGTGAT+CGG - chr2_3:28215002-28215021 Msa0286650:intron 30.0%
AAAATAGTGTAGAGAACAAG+TGG - chr2_3:28215071-28215090 Msa0286650:intron 30.0%
GATTAAGTTAACACTGCATA+TGG - chr2_3:28215224-28215243 Msa0286650:intron 30.0%
!!! AGCACTACATCTGTTTTAAT+TGG - chr2_3:28215584-28215603 Msa0286650:CDS 30.0%
!!! ACTACATCTGTTTTAATTGG+TGG - chr2_3:28215587-28215606 Msa0286650:CDS 30.0%
! TGTTTTCAATCCAAAACTCT+TGG + chr2_3:28215617-28215636 None:intergenic 30.0%
!! TAGAGAGTATCAATCATTAC+TGG + chr2_3:28215644-28215663 None:intergenic 30.0%
! ATATCAAGGTGTATAGGTTT+TGG + chr2_3:28215724-28215743 None:intergenic 30.0%
ATTATATTAGCCCAGAATGT+AGG - chr2_3:28215838-28215857 Msa0286650:CDS 30.0%
TTATATTAGCCCAGAATGTA+GGG - chr2_3:28215839-28215858 Msa0286650:CDS 30.0%
AGTTACAAGAAAAGCCTTAA+AGG + chr2_3:28215875-28215894 None:intergenic 30.0%
GAAAGAGGTCAAAAGATTTA+GGG + chr2_3:28215956-28215975 None:intergenic 30.0%
GACACTTGGTTGATTAATTA+AGG + chr2_3:28216060-28216079 None:intergenic 30.0%
!! TAGGAGCATTTATACACAAA+AGG - chr2_3:28216120-28216139 Msa0286650:intron 30.0%
!! AGGAGCATTTATACACAAAA+GGG - chr2_3:28216121-28216140 Msa0286650:intron 30.0%
AAATGCACTATTTCCAAGAA+AGG - chr2_3:28216237-28216256 Msa0286650:intron 30.0%
GGATAAGTTATCTATGAATG+GGG - chr2_3:28216533-28216552 Msa0286650:intron 30.0%
CAAGCTTCTTGAAAAAGAAA+AGG - chr2_3:28216647-28216666 Msa0286650:intron 30.0%
! GTTTTTCTTTGTTGCAATGT+TGG + chr2_3:28216799-28216818 None:intergenic 30.0%
!!! AGTAAATTCAGGTTGGTTTT+TGG - chr2_3:28216910-28216929 Msa0286650:intron 30.0%
!!! GTAAATTCAGGTTGGTTTTT+GGG - chr2_3:28216911-28216930 Msa0286650:intron 30.0%
TGTTAAAAAGCTGTTTAGCT+AGG - chr2_3:28217022-28217041 Msa0286650:intron 30.0%
!!! CTAGTTCGTTGTGTTTTTTA+AGG + chr2_3:28217250-28217269 None:intergenic 30.0%
! ACGTTTAGAGCTTATTTGAT+TGG + chr2_3:28217326-28217345 None:intergenic 30.0%
TGACACTAACACTTAACAAA+GGG + chr2_3:28217399-28217418 None:intergenic 30.0%
TAAAACAAATATTGCAGAGG+AGG - chr2_3:28217494-28217513 Msa0286650:intron 30.0%
!! CTCTTCTATCACTTTTGTAT+CGG + chr2_3:28217919-28217938 None:intergenic 30.0%
TTCTTTGATCACTTGTGTAT+TGG + chr2_3:28217961-28217980 None:intergenic 30.0%
AACATAGCACCAAAAATAAC+CGG - chr2_3:28218125-28218144 Msa0286650:intron 30.0%
AAAAGTTGTGAAAGGCTAAA+TGG + chr2_3:28218212-28218231 None:intergenic 30.0%
! AATTTTATGTGATAGCCATG+TGG - chr2_3:28218713-28218732 Msa0286650:CDS 30.0%
TAGAATTGATGAAAACCACA+TGG + chr2_3:28218731-28218750 None:intergenic 30.0%
AACAACAAAAGGCTTCATTA+AGG + chr2_3:28218831-28218850 None:intergenic 30.0%
ATGGAACTAACCTCAAAAAA+CGG + chr2_3:28218870-28218889 None:intergenic 30.0%
AAGCGAAAATCAGACAATAA+TGG + chr2_3:28218889-28218908 None:intergenic 30.0%
! GAACAGTTTTCGAATGTCAT+CGG + chr2_3:28213579-28213598 None:intergenic 35.0%
TCGAAAACTGTTCGAATCAT+TGG - chr2_3:28213586-28213605 Msa0286650:three_prime_UTR 35.0%
CGAAAACTGTTCGAATCATT+GGG - chr2_3:28213587-28213606 Msa0286650:three_prime_UTR 35.0%
TAGAATCAGCAAGGAAATCA+AGG + chr2_3:28213664-28213683 None:intergenic 35.0%
! AAAGGGATTTAGAATCAGCA+AGG + chr2_3:28213673-28213692 None:intergenic 35.0%
CCTTACTGAAAAGTTTGGAA+AGG + chr2_3:28213691-28213710 None:intergenic 35.0%
! CCTTTCCAAACTTTTCAGTA+AGG - chr2_3:28213688-28213707 Msa0286650:three_prime_UTR 35.0%
TGGTACCTTACTGAAAAGTT+TGG + chr2_3:28213696-28213715 None:intergenic 35.0%
!! GCCTTATTTGAGTTTATCTG+CGG - chr2_3:28213870-28213889 Msa0286650:CDS 35.0%
TCCGCAGATAAACTCAAATA+AGG + chr2_3:28213874-28213893 None:intergenic 35.0%
!! GAGAATTTTTGAGAGAGCTA+TGG - chr2_3:28214172-28214191 Msa0286650:CDS 35.0%
! AAGTTTTCCTAGAGAGCTTA+CGG + chr2_3:28214284-28214303 None:intergenic 35.0%
ATGTTGGCATTGCAGTATAA+TGG - chr2_3:28214490-28214509 Msa0286650:CDS 35.0%
TGTTGGCATTGCAGTATAAT+GGG - chr2_3:28214491-28214510 Msa0286650:CDS 35.0%
TGGAAAGCTGAAACTTGAAA+AGG - chr2_3:28214528-28214547 Msa0286650:CDS 35.0%
TTCTGATGTTTCGACTCATA+AGG - chr2_3:28214624-28214643 Msa0286650:CDS 35.0%
! TCATAAGGAGGATTTGGTAA+AGG - chr2_3:28214639-28214658 Msa0286650:CDS 35.0%
CTTGGGAAGTAAATATTGAG+AGG + chr2_3:28214706-28214725 None:intergenic 35.0%
AACGAACCGTTCTTAATCTT+GGG + chr2_3:28214723-28214742 None:intergenic 35.0%
TAACGAACCGTTCTTAATCT+TGG + chr2_3:28214724-28214743 None:intergenic 35.0%
GCTATTTGTGGAAAAGTCTA+TGG - chr2_3:28214808-28214827 Msa0286650:CDS 35.0%
TGCGATTCTTGATATATTGC+AGG - chr2_3:28214895-28214914 Msa0286650:CDS 35.0%
CATCAAAAGCCTTGACATTA+AGG - chr2_3:28214967-28214986 Msa0286650:intron 35.0%
TATGGATAGTAGTTGTGATC+GGG - chr2_3:28215003-28215022 Msa0286650:intron 35.0%
! TGGAATGATTAGGGTTTTCT+AGG - chr2_3:28215040-28215059 Msa0286650:intron 35.0%
! GGAATGATTAGGGTTTTCTA+GGG - chr2_3:28215041-28215060 Msa0286650:intron 35.0%
!! ACAAGTGGATTGAAGGATAT+TGG - chr2_3:28215086-28215105 Msa0286650:intron 35.0%
!! CAAGTGGATTGAAGGATATT+GGG - chr2_3:28215087-28215106 Msa0286650:intron 35.0%
AGGATATTGGGAATAGTTTG+AGG - chr2_3:28215099-28215118 Msa0286650:intron 35.0%
GGATATTGGGAATAGTTTGA+GGG - chr2_3:28215100-28215119 Msa0286650:intron 35.0%
CATAGTAGAACCGAGAATTA+TGG - chr2_3:28215148-28215167 Msa0286650:intron 35.0%
GAAAATAGGAAAGGAAACCA+TGG - chr2_3:28215273-28215292 Msa0286650:intron 35.0%
! TGGTTTACGATAGAGCATTA+TGG + chr2_3:28215370-28215389 None:intergenic 35.0%
TCGTAAACCAAACGAATTTG+CGG - chr2_3:28215380-28215399 Msa0286650:intron 35.0%
AGATGTAGTGCTTTCAATCA+TGG + chr2_3:28215576-28215595 None:intergenic 35.0%
TTTCAATCCAAAACTCTTGG+AGG + chr2_3:28215614-28215633 None:intergenic 35.0%
AACCTATACACCTTGATATG+TGG - chr2_3:28215725-28215744 Msa0286650:CDS 35.0%
ATAATTCGTGCCACATATCA+AGG + chr2_3:28215738-28215757 None:intergenic 35.0%
CAAATATCTCCCTACATTCT+GGG + chr2_3:28215851-28215870 None:intergenic 35.0%
TCAAATATCTCCCTACATTC+TGG + chr2_3:28215852-28215871 None:intergenic 35.0%
AGGGAGATATTTGACCTTTA+AGG - chr2_3:28215858-28215877 Msa0286650:CDS 35.0%
GTCAAAAGATTTAGGGATAG+AGG + chr2_3:28215949-28215968 None:intergenic 35.0%
GGAAAGAGGTCAAAAGATTT+AGG + chr2_3:28215957-28215976 None:intergenic 35.0%
CTCAACAAATTAAGGGAAAG+AGG + chr2_3:28215971-28215990 None:intergenic 35.0%
TGAAAAGTGGCTTACACTAA+GGG + chr2_3:28216005-28216024 None:intergenic 35.0%
TTGAAAAGTGGCTTACACTA+AGG + chr2_3:28216006-28216025 None:intergenic 35.0%
CAAGAAAGGATTTCCACATT+GGG - chr2_3:28216251-28216270 Msa0286650:intron 35.0%
ATGGAAATGCTAACATGTGA+GGG + chr2_3:28216291-28216310 None:intergenic 35.0%
AATGGAAATGCTAACATGTG+AGG + chr2_3:28216292-28216311 None:intergenic 35.0%
GAGGACCAACTTTAATATTC+TGG + chr2_3:28216458-28216477 None:intergenic 35.0%
CACAATCACAAAAATGCACA+GGG + chr2_3:28216482-28216501 None:intergenic 35.0%
TCACAATCACAAAAATGCAC+AGG + chr2_3:28216483-28216502 None:intergenic 35.0%
! TGTGCATTTTTGTGATTGTG+AGG - chr2_3:28216482-28216501 Msa0286650:intron 35.0%
! CAGTCCTTTTATCGCAAAAA+AGG - chr2_3:28216512-28216531 Msa0286650:intron 35.0%
TATGAATGGGGAAACTGAAA+GGG - chr2_3:28216545-28216564 Msa0286650:intron 35.0%
AGGGAAAAGTTATCTATGAG+TGG - chr2_3:28216564-28216583 Msa0286650:intron 35.0%
GGGAAAAGTTATCTATGAGT+GGG - chr2_3:28216565-28216584 Msa0286650:intron 35.0%
GGAAAAGTTATCTATGAGTG+GGG - chr2_3:28216566-28216585 Msa0286650:intron 35.0%
! AAAAACAAAGCAGCTTTGAC+AGG - chr2_3:28216813-28216832 Msa0286650:intron 35.0%
! AAAACAAAGCAGCTTTGACA+GGG - chr2_3:28216814-28216833 Msa0286650:intron 35.0%
!! CATGATCCTTTCAAGTTCTT+GGG + chr2_3:28216841-28216860 None:intergenic 35.0%
TTTGCCATAACTAGCTGATA+AGG - chr2_3:28216938-28216957 Msa0286650:intron 35.0%
ACTACCTTATCAGCTAGTTA+TGG + chr2_3:28216945-28216964 None:intergenic 35.0%
CTGACACTAACACTTAACAA+AGG + chr2_3:28217400-28217419 None:intergenic 35.0%
!!! AACTGTGATTTTTGGTCTTC+AGG - chr2_3:28217461-28217480 Msa0286650:intron 35.0%
!!! TGATTTTTGGTCTTCAGGAA+TGG - chr2_3:28217466-28217485 Msa0286650:intron 35.0%
GAGAAAATCACTTCCCAAAT+CGG - chr2_3:28217569-28217588 Msa0286650:intron 35.0%
TTGCTTTCACTTTCCGATTT+GGG + chr2_3:28217585-28217604 None:intergenic 35.0%
ATTGCTTTCACTTTCCGATT+TGG + chr2_3:28217586-28217605 None:intergenic 35.0%
AAATCGGAAAGTGAAAGCAA+TGG - chr2_3:28217585-28217604 Msa0286650:intron 35.0%
AATCGGAAAGTGAAAGCAAT+GGG - chr2_3:28217586-28217605 Msa0286650:intron 35.0%
!! AAATCATGTTCTGGTTCAGT+AGG + chr2_3:28217684-28217703 None:intergenic 35.0%
! ACTGAACCAGAACATGATTT+TGG - chr2_3:28217684-28217703 Msa0286650:CDS 35.0%
! CTGAACCAGAACATGATTTT+GGG - chr2_3:28217685-28217704 Msa0286650:CDS 35.0%
! TGAACCAGAACATGATTTTG+GGG - chr2_3:28217686-28217705 Msa0286650:CDS 35.0%
TCTTCAGCAGAATCAAACTT+CGG + chr2_3:28217804-28217823 None:intergenic 35.0%
!! TCTATCACTTTTGTATCGGA+AGG + chr2_3:28217915-28217934 None:intergenic 35.0%
! TGTATTGGTAGGTTGAGATT+CGG + chr2_3:28217946-28217965 None:intergenic 35.0%
! TTGATCACTTGTGTATTGGT+AGG + chr2_3:28217957-28217976 None:intergenic 35.0%
! TCTATCACTCTTGTATTGGT+AGG + chr2_3:28217999-28218018 None:intergenic 35.0%
CTCTTCTATCACTCTTGTAT+TGG + chr2_3:28218003-28218022 None:intergenic 35.0%
TTCTTCTATCACTTGTGCAT+TGG + chr2_3:28218045-28218064 None:intergenic 35.0%
AAAGAAATCTTGGACACAGT+TGG - chr2_3:28218169-28218188 Msa0286650:intron 35.0%
! CATTAGTTTCCCAGAACAAA+CGG - chr2_3:28218238-28218257 Msa0286650:intron 35.0%
GCTGATAAGAATACTGTTGA+TGG - chr2_3:28218314-28218333 Msa0286650:intron 35.0%
! TCAACGATTTTCTCAACTAC+TGG + chr2_3:28218419-28218438 None:intergenic 35.0%
GTTGAGAAAATCGTTGAAAC+AGG - chr2_3:28218422-28218441 Msa0286650:intron 35.0%
CGATCTGCAAATGTTGAAAT+AGG - chr2_3:28218455-28218474 Msa0286650:intron 35.0%
!!! AGAATTAACCCCGTTTTTTG+AGG - chr2_3:28218857-28218876 Msa0286650:CDS 35.0%
TGGAACTAACCTCAAAAAAC+GGG + chr2_3:28218869-28218888 None:intergenic 35.0%
AGAGCAGTGAGAATATTCGT+CGG - chr2_3:28213530-28213549 Msa0286650:three_prime_UTR 40.0%
AGAATATTCGTCGGAGGATT+AGG - chr2_3:28213539-28213558 Msa0286650:three_prime_UTR 40.0%
!! TATAATGGGTGTGTGTGGAA+AGG - chr2_3:28214505-28214524 Msa0286650:CDS 40.0%
ACGATCAAGGTAATGCTCTT+TGG + chr2_3:28214554-28214573 None:intergenic 40.0%
TGATGTTTCGACTCATAAGG+AGG - chr2_3:28214627-28214646 Msa0286650:CDS 40.0%
TTCGACTCATAAGGAGGATT+TGG - chr2_3:28214633-28214652 Msa0286650:CDS 40.0%
! TCTACAAAGCGTCTTGCATT+AGG + chr2_3:28214670-28214689 None:intergenic 40.0%
ATATTGAGAGGCTTTGCATC+TGG + chr2_3:28214694-28214713 None:intergenic 40.0%
! TGATGAGATAGGTTTGGTCA+AGG - chr2_3:28214854-28214873 Msa0286650:CDS 40.0%
ACTATCCATAACTGTGATCG+TGG + chr2_3:28214993-28215012 None:intergenic 40.0%
! ATCGGGTGGAAGAATGATTT+TGG - chr2_3:28215020-28215039 Msa0286650:intron 40.0%
!! ATGATTAGGGTTTTCTAGGG+TGG - chr2_3:28215044-28215063 Msa0286650:intron 40.0%
!! GTAGAGAACAAGTGGATTGA+AGG - chr2_3:28215079-28215098 Msa0286650:intron 40.0%
!! TTGTTGTTTGCTGAAGTCCA+TGG + chr2_3:28215293-28215312 None:intergenic 40.0%
! GGTGTAGAGTCACTTTACTA+TGG + chr2_3:28215703-28215722 None:intergenic 40.0%
TGCCACATATCAAGGTGTAT+AGG + chr2_3:28215730-28215749 None:intergenic 40.0%
ACGAATTATTGTGTAGCGCT+AGG - chr2_3:28215749-28215768 Msa0286650:CDS 40.0%
ATAAGGATGCAGTTAGCAAG+AGG + chr2_3:28215904-28215923 None:intergenic 40.0%
TGCTAACTGCATCCTTATTC+AGG - chr2_3:28215906-28215925 Msa0286650:CDS 40.0%
TCTTCATCGTTCAAGACACT+TGG + chr2_3:28216074-28216093 None:intergenic 40.0%
CCAATGTGGAAATCCTTTCT+TGG + chr2_3:28216253-28216272 None:intergenic 40.0%
CCAAGAAAGGATTTCCACAT+TGG - chr2_3:28216250-28216269 Msa0286650:intron 40.0%
ACATGTTAAGGAACCCAATG+TGG + chr2_3:28216267-28216286 None:intergenic 40.0%
TGCTACAAATATACCTGTGC+AGG - chr2_3:28216386-28216405 Msa0286650:intron 40.0%
GTTAAATCCATACCCTTCAG+TGG - chr2_3:28216408-28216427 Msa0286650:intron 40.0%
CTATGAATGGGGAAACTGAA+AGG - chr2_3:28216544-28216563 Msa0286650:intron 40.0%
GTTTCTAACACCAAGCATCT+TGG - chr2_3:28216669-28216688 Msa0286650:intron 40.0%
GTAGATAGTGCAACAGATGA+TGG - chr2_3:28216747-28216766 Msa0286650:intron 40.0%
!! CCATGATCCTTTCAAGTTCT+TGG + chr2_3:28216842-28216861 None:intergenic 40.0%
CCAAGAACTTGAAAGGATCA+TGG - chr2_3:28216839-28216858 Msa0286650:intron 40.0%
TGAAAGGATCATGGAAAGTC+AGG - chr2_3:28216848-28216867 Msa0286650:intron 40.0%
GTTTAGCTAGGTTATTCAGC+TGG - chr2_3:28217034-28217053 Msa0286650:intron 40.0%
TAACACTTAACAAAGGGCTG+TGG + chr2_3:28217393-28217412 None:intergenic 40.0%
AACCCATTGAAGCGCAAAAA+AGG - chr2_3:28217517-28217536 Msa0286650:intron 40.0%
!!! CTCCTTTTTTGCGCTTCAAT+GGG + chr2_3:28217522-28217541 None:intergenic 40.0%
ATCGGAAAGTGAAAGCAATG+GGG - chr2_3:28217587-28217606 Msa0286650:intron 40.0%
! CATTTTACTCTTGCCTACAG+GGG + chr2_3:28217625-28217644 None:intergenic 40.0%
! GCATTTTACTCTTGCCTACA+GGG + chr2_3:28217626-28217645 None:intergenic 40.0%
! TGCATTTTACTCTTGCCTAC+AGG + chr2_3:28217627-28217646 None:intergenic 40.0%
AAAATGCAGACCCTTCTAGA+TGG - chr2_3:28217639-28217658 Msa0286650:intron 40.0%
AAATGCAGACCCTTCTAGAT+GGG - chr2_3:28217640-28217659 Msa0286650:intron 40.0%
!! CTTCTGAGACCATGAAACTT+TGG + chr2_3:28217718-28217737 None:intergenic 40.0%
!! TGGAGAGAACTTGTTGGTAA+AGG - chr2_3:28217744-28217763 Msa0286650:CDS 40.0%
!! AGAGAACTTGTTGGTAAAGG+AGG - chr2_3:28217747-28217766 Msa0286650:CDS 40.0%
AAACTTCGGCAATATGAGAG+AGG + chr2_3:28217790-28217809 None:intergenic 40.0%
GAAGATCAGCAAAACTCTGA+TGG - chr2_3:28217819-28217838 Msa0286650:CDS 40.0%
AGTTTCATCGTTCGTAGAAG+AGG + chr2_3:28217856-28217875 None:intergenic 40.0%
GAACGATGAAACTGAAGACA+TGG - chr2_3:28217863-28217882 Msa0286650:CDS 40.0%
! TCTATCACTTGTGCATTGGT+AGG + chr2_3:28218041-28218060 None:intergenic 40.0%
ATGTTATGCTGAGTTTCAGC+AGG + chr2_3:28218110-28218129 None:intergenic 40.0%
CATGGTGGCAAAAGAAATCT+TGG - chr2_3:28218159-28218178 Msa0286650:intron 40.0%
TGTCAGGCAAAAGTTGTGAA+AGG + chr2_3:28218220-28218239 None:intergenic 40.0%
!! TGTTCTGGGAAACTAATGTC+AGG + chr2_3:28218236-28218255 None:intergenic 40.0%
GTTCTTTAGCCGTTTGTTCT+GGG + chr2_3:28218250-28218269 None:intergenic 40.0%
TCACTGATGGCTTCAACTTA+GGG - chr2_3:28218342-28218361 Msa0286650:intron 40.0%
AAATCGTTGAAACAGGTCCA+AGG - chr2_3:28218429-28218448 Msa0286650:intron 40.0%
AATCGTTGAAACAGGTCCAA+GGG - chr2_3:28218430-28218449 Msa0286650:intron 40.0%
!! GTGCTGATTCTTTGAAAGAG+TGG - chr2_3:28218501-28218520 Msa0286650:intron 40.0%
TTTGAGTGATCCACTAACAG+CGG + chr2_3:28218540-28218559 None:intergenic 40.0%
GGATCACTCAAAAGAAAACG+TGG - chr2_3:28218548-28218567 Msa0286650:intron 40.0%
AAACGTGGTGAGAAGAAGTA+AGG - chr2_3:28218563-28218582 Msa0286650:intron 40.0%
AACGTGGTGAGAAGAAGTAA+GGG - chr2_3:28218564-28218583 Msa0286650:intron 40.0%
AATTTCCATACAGCAGAAGC+AGG - chr2_3:28218591-28218610 Msa0286650:intron 40.0%
!! TTGCTTTGCTGTTATACACC+AGG - chr2_3:28218647-28218666 Msa0286650:intron 40.0%
ACACCAGGTGTAATGTTATG+AGG - chr2_3:28218662-28218681 Msa0286650:intron 40.0%
AAAGGCTTCATTAAGGAAGC+TGG + chr2_3:28218824-28218843 None:intergenic 40.0%
GGAACTAACCTCAAAAAACG+GGG + chr2_3:28218868-28218887 None:intergenic 40.0%
GAACAAACAGCTTGCAAGCA+TGG - chr2_3:28213487-28213506 Msa0286650:three_prime_UTR 45.0%
TCGAATGTCATCGGTGGTTA+CGG + chr2_3:28213570-28213589 None:intergenic 45.0%
! CAGTTTTCGAATGTCATCGG+TGG + chr2_3:28213576-28213595 None:intergenic 45.0%
CTCGAAACCATTCGTACCAA+AGG - chr2_3:28213623-28213642 Msa0286650:three_prime_UTR 45.0%
CTTGATTCCGTAAGCTCTCT+AGG - chr2_3:28214274-28214293 Msa0286650:CDS 45.0%
TTAAGGGTTTAGGCCCTCTT+TGG + chr2_3:28214426-28214445 None:intergenic 45.0%
!! TGCAGTATAATGGGTGTGTG+TGG - chr2_3:28214500-28214519 Msa0286650:CDS 45.0%
TGAGTCGAAACATCAGAAGC+TGG + chr2_3:28214622-28214641 None:intergenic 45.0%
! TGATCGTGGCCTTAATGTCA+AGG + chr2_3:28214979-28214998 None:intergenic 45.0%
TAAGGCCACGATCACAGTTA+TGG - chr2_3:28214985-28215004 Msa0286650:intron 45.0%
TTGGGAATAGTTTGAGGGTG+AGG - chr2_3:28215105-28215124 Msa0286650:intron 45.0%
TGGGAATAGTTTGAGGGTGA+GGG - chr2_3:28215106-28215125 Msa0286650:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr2_3:28215320-28215339 Msa0286650:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr2_3:28215321-28215340 Msa0286650:intron 45.0%
TCAGACTGAAGATCTGAAGG+TGG + chr2_3:28215425-28215444 None:intergenic 45.0%
!! CTTTTGATTCACTCGAGTCG+CGG + chr2_3:28215674-28215693 None:intergenic 45.0%
! ACATGTGAGGGCACATGTTA+AGG + chr2_3:28216279-28216298 None:intergenic 45.0%
GGTATGGATTTAACCTGCAC+AGG + chr2_3:28216402-28216421 None:intergenic 45.0%
TGCTTACCAGTTCCACTGAA+GGG + chr2_3:28216423-28216442 None:intergenic 45.0%
TCACAAAAATGCACAGGGAG+AGG + chr2_3:28216477-28216496 None:intergenic 45.0%
ATGAGTGGGGAAGCAGAAAT+TGG - chr2_3:28216579-28216598 Msa0286650:intron 45.0%
GTGCTTCTTTCCAAGATGCT+TGG + chr2_3:28216682-28216701 None:intergenic 45.0%
GGAAGGGAGGTAGTAAATTC+AGG - chr2_3:28216899-28216918 Msa0286650:intron 45.0%
GGGAGGTAGTAAATTCAGGT+TGG - chr2_3:28216903-28216922 Msa0286650:intron 45.0%
!!! GCTCCTTTTTTGCGCTTCAA+TGG + chr2_3:28217523-28217542 None:intergenic 45.0%
GACTCCCCAAAATCATGTTC+TGG + chr2_3:28217693-28217712 None:intergenic 45.0%
TCTTCGTGGAGAGAACTTGT+TGG - chr2_3:28217738-28217757 Msa0286650:CDS 45.0%
! TATGTAGGTTGAGCTTCAGC+AGG + chr2_3:28218068-28218087 None:intergenic 45.0%
!!! ACACCTGTGCCGGTTATTTT+TGG + chr2_3:28218137-28218156 None:intergenic 45.0%
GGTTCTTTAGCCGTTTGTTC+TGG + chr2_3:28218251-28218270 None:intergenic 45.0%
TCCAGTGAGTGCAAGCATAA+TGG - chr2_3:28218290-28218309 Msa0286650:intron 45.0%
ACCATTATGCTTGCACTCAC+TGG + chr2_3:28218294-28218313 None:intergenic 45.0%
! GTTGATGGAACTGTCACTGA+TGG - chr2_3:28218329-28218348 Msa0286650:intron 45.0%
GTCACTGATGGCTTCAACTT+AGG - chr2_3:28218341-28218360 Msa0286650:intron 45.0%
CACTGATGGCTTCAACTTAG+GGG - chr2_3:28218343-28218362 Msa0286650:intron 45.0%
ACATTTGCAGATCGTTCCCT+TGG + chr2_3:28218449-28218468 None:intergenic 45.0%
AAAGCTAAAGCCGCTGTTAG+TGG - chr2_3:28218527-28218546 Msa0286650:intron 45.0%
ACAATCCTGCTTCTGCTGTA+TGG + chr2_3:28218599-28218618 None:intergenic 45.0%
CCACCTCATAACATTACACC+TGG + chr2_3:28218668-28218687 None:intergenic 45.0%
CCAGGTGTAATGTTATGAGG+TGG - chr2_3:28218665-28218684 Msa0286650:intron 45.0%
TTGTAGTACATGTCCGTTCC+AGG - chr2_3:28218783-28218802 Msa0286650:CDS 45.0%
TGTAGTACATGTCCGTTCCA+GGG - chr2_3:28218784-28218803 Msa0286650:CDS 45.0%
TACCAAAACTTGCCCTGGAA+CGG + chr2_3:28218799-28218818 None:intergenic 45.0%
TGGATTACCAAAACTTGCCC+TGG + chr2_3:28218804-28218823 None:intergenic 45.0%
CAAACAGCTTGCAAGCATGG+AGG - chr2_3:28213490-28213509 Msa0286650:three_prime_UTR 50.0%
GCAGTGAGAATATTCGTCGG+AGG - chr2_3:28213533-28213552 Msa0286650:three_prime_UTR 50.0%
ACTGCGACCTTTGGTACGAA+TGG + chr2_3:28213633-28213652 None:intergenic 50.0%
AATGGGTGTGTGTGGAAAGG+TGG - chr2_3:28214508-28214527 Msa0286650:CDS 50.0%
GTCGAAACATCAGAAGCTGG+TGG + chr2_3:28214619-28214638 None:intergenic 50.0%
GGATAGTAGTTGTGATCGGG+TGG - chr2_3:28215006-28215025 Msa0286650:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr2_3:28215322-28215341 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr2_3:28215319-28215338 Msa0286650:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr2_3:28215325-28215344 Msa0286650:intron 50.0%
ACGCTCACCGCAAATTCGTT+TGG + chr2_3:28215390-28215409 None:intergenic 50.0%
AAACGAATTTGCGGTGAGCG+TGG - chr2_3:28215389-28215408 Msa0286650:intron 50.0%
GCGTCAGACTGAAGATCTGA+AGG + chr2_3:28215428-28215447 None:intergenic 50.0%
! TGGTGGTCCTCCAAGAGTTT+TGG - chr2_3:28215604-28215623 Msa0286650:CDS 50.0%
TCCATACCCTTCAGTGGAAC+TGG - chr2_3:28216414-28216433 Msa0286650:intron 50.0%
ACCAGTTCCACTGAAGGGTA+TGG + chr2_3:28216418-28216437 None:intergenic 50.0%
GTGCTTACCAGTTCCACTGA+AGG + chr2_3:28216424-28216443 None:intergenic 50.0%
AGTGGGGAAGCAGAAATTGG+TGG - chr2_3:28216582-28216601 Msa0286650:intron 50.0%
CAGGGACCCAAGAACTTGAA+AGG - chr2_3:28216832-28216851 Msa0286650:intron 50.0%
GAGCAAGAGCGATTCTAGCA+AGG - chr2_3:28217539-28217558 Msa0286650:intron 50.0%
AGATCCCAGCCCATCTAGAA+GGG + chr2_3:28217652-28217671 None:intergenic 50.0%
GGGAGTCTGCCAAAGTTTCA+TGG - chr2_3:28217706-28217725 Msa0286650:CDS 50.0%
CATGGTCTCAGAAGTCTTCG+TGG - chr2_3:28217724-28217743 Msa0286650:CDS 50.0%
TATCGGAAGGTTCGCTCTCT+GGG + chr2_3:28217902-28217921 None:intergenic 50.0%
! TTGGTAGGTTGAGATTCGGC+AGG + chr2_3:28217942-28217961 None:intergenic 50.0%
TTGGTAGGCAGAGATTCAGC+AGG + chr2_3:28218026-28218045 None:intergenic 50.0%
GCACCAAAAATAACCGGCAC+AGG - chr2_3:28218131-28218150 Msa0286650:intron 50.0%
TAACCGGCACAGGTGTTTCA+TGG - chr2_3:28218141-28218160 Msa0286650:intron 50.0%
! GAACCCATTTTGTACCCTGC+CGG - chr2_3:28218266-28218285 Msa0286650:intron 50.0%
GAACCGGCAGGGTACAAAAT+GGG + chr2_3:28218272-28218291 None:intergenic 50.0%
ATGCTTGCACTCACTGGAAC+CGG + chr2_3:28218288-28218307 None:intergenic 50.0%
CCAGCATGCTCACTATTCTC+TGG + chr2_3:28218377-28218396 None:intergenic 50.0%
CCAGAGAATAGTGAGCATGC+TGG - chr2_3:28218374-28218393 Msa0286650:intron 50.0%
GTAAGCGAGACTGCGACCTT+TGG + chr2_3:28213642-28213661 None:intergenic 55.0%
AGTTTGAGGGTGAGGGAGTG+TGG - chr2_3:28215113-28215132 Msa0286650:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr2_3:28215327-28215346 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr2_3:28215333-28215352 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr2_3:28215334-28215353 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr2_3:28215333-28215352 Msa0286650:intron 55.0%
GTTACGGGGATAGCTCAGTC+GGG + chr2_3:28215454-28215473 None:intergenic 55.0%
CGTTACGGGGATAGCTCAGT+CGG + chr2_3:28215455-28215474 None:intergenic 55.0%
GTTGCGTCTAGTACCCCTGT+AGG - chr2_3:28217609-28217628 Msa0286650:intron 55.0%
! CAGACCCTTCTAGATGGGCT+GGG - chr2_3:28217645-28217664 Msa0286650:intron 55.0%
CAGATCCCAGCCCATCTAGA+AGG + chr2_3:28217653-28217672 None:intergenic 55.0%
!! CTTCTAGATGGGCTGGGATC+TGG - chr2_3:28217651-28217670 Msa0286650:intron 55.0%
GTATCGGAAGGTTCGCTCTC+TGG + chr2_3:28217903-28217922 None:intergenic 55.0%
CCACCATGAAACACCTGTGC+CGG + chr2_3:28218147-28218166 None:intergenic 55.0%
GGAACCGGCAGGGTACAAAA+TGG + chr2_3:28218273-28218292 None:intergenic 55.0%
! GTCCGTTCCAGGGCAAGTTT+TGG - chr2_3:28218794-28218813 Msa0286650:CDS 55.0%
GCAGACCCTTCTAGATGGGC+TGG - chr2_3:28217644-28217663 Msa0286650:intron 60.0%
CCGGCACAGGTGTTTCATGG+TGG - chr2_3:28218144-28218163 Msa0286650:intron 60.0%
TGCACTCACTGGAACCGGCA+GGG + chr2_3:28218283-28218302 None:intergenic 60.0%
TTGCACTCACTGGAACCGGC+AGG + chr2_3:28218284-28218303 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 28213470 28218935 28213470 ID=Msa0286650;Name=Msa0286650
chr2_3 mRNA 28213470 28218935 28213470 ID=Msa0286650-mRNA-1;Parent=Msa0286650;Name=Msa0286650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=36|1|1|1|1|1|4|352|665
chr2_3 exon 28213470 28214922 28213470 ID=Msa0286650-mRNA-1:exon:10027;Parent=Msa0286650-mRNA-1
chr2_3 exon 28215536 28215997 28215536 ID=Msa0286650-mRNA-1:exon:10026;Parent=Msa0286650-mRNA-1
chr2_3 exon 28217670 28217900 28217670 ID=Msa0286650-mRNA-1:exon:10025;Parent=Msa0286650-mRNA-1
chr2_3 exon 28218696 28218935 28218696 ID=Msa0286650-mRNA-1:exon:10024;Parent=Msa0286650-mRNA-1
chr2_3 five_prime_UTR 28218900 28218935 28218900 ID=Msa0286650-mRNA-1:five_prime_utr;Parent=Msa0286650-mRNA-1
chr2_3 CDS 28218696 28218899 28218696 ID=Msa0286650-mRNA-1:cds;Parent=Msa0286650-mRNA-1
chr2_3 CDS 28217670 28217900 28217670 ID=Msa0286650-mRNA-1:cds;Parent=Msa0286650-mRNA-1
chr2_3 CDS 28215536 28215997 28215536 ID=Msa0286650-mRNA-1:cds;Parent=Msa0286650-mRNA-1
chr2_3 CDS 28213822 28214922 28213822 ID=Msa0286650-mRNA-1:cds;Parent=Msa0286650-mRNA-1
chr2_3 three_prime_UTR 28213470 28213821 28213470 ID=Msa0286650-mRNA-1:three_prime_utr;Parent=Msa0286650-mRNA-1
Gene Sequence

>Msa0286650

ATGGAGGAAGAAGAAAGCGAGAAGAGAGCAGTGAGAATATTCGTCGGAGGATTAGGCGAAGCCGTAACCACCGATGACATTCGAAAACTGTTCGAATCATTGGGTAGCGTTCAATCACTCGAAACCATTCGTACCAAAGGTCGCAGTCTCGCTTACCTTGATTTCCTTGCTGATTCTAAATCCCTTTCCAAACTTTTCAGTAAGTATAATGGGTGTGTGTGGAAAGGTGGAAAGCTGAAACTTGAAAAGGCCAAAGAGCATTACCTTGATCGTTTGAAAAAAGAATGGGAAGAAGATGCAATTCTTAGTATTGAACCACCAGCTTCTGATGTTTCGACTCATAAGGAGGATTTGGTAAAGGAAAAGCCTAATGCAAGACGCTTTGTAGATCCAGATGCAAAGCCTCTCAATATTTACTTCCCAAGATTAAGAACGGTTAAATCCATACCCTTCAGTGGAACTGGTAAGCACAAATACAGTTTCCAGAATATTAAAGTTGGTCCTCTCCCTGTGCATTTTTGTGATTGTGAGGAACATTGCAGTCCTTTTATCGCAAAAAAGGATAAGTTATCTATGAATGGGGAAACTGAAAGGGAAAAGTTATCTATGAGTGGGGAAGCAGAAATTGGTGGAATAAATGATGAAGAAATTAACATAATGAATGCTGTGATGAACAAGCTTCTTGAAAAAGAAAAGGTTTCTAACACCAAGCATCTTGGAAAGAAGCACGATTCTTTTGAATCTCTCAGTGTTATTCATTCTAATGAATGTGAAGTAGATAGTGCAACAGATGATGGTGATGATGATGATGATGATCTCATAACCAACATTGCAACAAAGAAAAACAAAGCAGCTTTGACAGGGACCCAAGAACTTGAAAGGATCATGGAAAGTCAGGAATGGTCCAATAAAACAAATATTGCAGAGGAGGAACCCATTGAAGCGCAAAAAAGGAGCAAGAGCGATTCTAGCAAGGTTAAGAAGAGAAAATCACTTCCCAAATCGGAAAGTGAAAGCAATGGGGTTGCGTCTAGTACCCCTGTAGGCAAGAGTAAAATGCAGACCCTTCTAGATGGGCTGGGATCTGGTGCAAAGCCTACTGAACCAGAACATGATTTTGGGGAGTCTGCCAAAGTTTCATGGTCTCAGAAGTCTTCGTGGAGAGAACTTGTTGGTAAAGGAGGCAATGCTTCATTCAGTGCCTCTCTCATATTGCCGAAGTTTGATTCTGCTGAAGATCAGCAAAACTCTGATGGTTCTTACACTTCCTCTTCTACGAACGATGAAACTGAAGACATGGAAAGCGATGAATACCCAGAGAGCGAACCTTCCGATACAAAAGTGATAGAAGAGCCTGCCGAATCTCAACCTACCAATACACAAGTGATCAAAGAACATGCTGAAGCTCAACCTACCAATACAAGAGTGATAGAAGAGCCTGCTGAATCTCTGCCTACCAATGCACAAGTGATAGAAGAACCTGCTGAAGCTCAACCTACATATAAACAAGTGATAACTGAACCTGCTGAAACTCAGCATAACATAGCACCAAAAATAACCGGCACAGGTGTTTCATGGTGGCAAAAGAAATCTTGGACACAGTTGGCTAATGAGAATAACAGTCCATTTAGCCTTTCACAACTTTTGCCTGACATTAGTTTCCCAGAACAAACGGCTAAAGAACCCATTTTGTACCCTGCCGGTTCCAGTGAGTGCAAGCATAATGGTGCTGATAAGAATACTGTTGATGGAACTGTCACTGATGGCTTCAACTTAGGGGAGATTGTACCAGAGAATAGTGAGCATGCTGGTACTGATATAGTTTCTGCTCCAGTAGTTGAGAAAATCGTTGAAACAGGTCCAAGGGAACGATCTGCAAATGTTGAAATAGGAGAAACTTGCTCATTTATGAGAAGTGCTGATTCTTTGAAAGAGTGGAAAAAAGCTAAAGCCGCTGTTAGTGGATCACTCAAAAGAAAACGTGGTGAGAAGAAGTAA

Protein sequence

>Msa0286650

MEEEESEKRAVRIFVGGLGEAVTTDDIRKLFESLGSVQSLETIRTKGRSLAYLDFLADSKSLSKLFSKYNGCVWKGGKLKLEKAKEHYLDRLKKEWEEDAILSIEPPASDVSTHKEDLVKEKPNARRFVDPDAKPLNIYFPRLRTVKSIPFSGTGKHKYSFQNIKVGPLPVHFCDCEEHCSPFIAKKDKLSMNGETEREKLSMSGEAEIGGINDEEINIMNAVMNKLLEKEKVSNTKHLGKKHDSFESLSVIHSNECEVDSATDDGDDDDDDLITNIATKKNKAALTGTQELERIMESQEWSNKTNIAEEEPIEAQKRSKSDSSKVKKRKSLPKSESESNGVASSTPVGKSKMQTLLDGLGSGAKPTEPEHDFGESAKVSWSQKSSWRELVGKGGNASFSASLILPKFDSAEDQQNSDGSYTSSSTNDETEDMESDEYPESEPSDTKVIEEPAESQPTNTQVIKEHAEAQPTNTRVIEEPAESLPTNAQVIEEPAEAQPTYKQVITEPAETQHNIAPKITGTGVSWWQKKSWTQLANENNSPFSLSQLLPDISFPEQTAKEPILYPAGSSECKHNGADKNTVDGTVTDGFNLGEIVPENSEHAGTDIVSAPVVEKIVETGPRERSANVEIGETCSFMRSADSLKEWKKAKAAVSGSLKRKRGEKK*