AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0205230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0205230 MtrunA17_Chr2g0303511 94.144 666 32 2 1 665 1 660 0.0 1237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0205230 AT5G58130.1 49.356 233 88 5 3 233 2 206 7.32e-61 217

Find 161 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATCCTTTCAAGTTCT+TGG 0.115429 2_1:-31878390 None:intergenic
ACTGAACCAGAACATGATTT+TGG 0.178047 2_1:+31879235 Msa0205230:CDS
GGTTCTTTAGCCGTTTGTTC+TGG 0.189946 2_1:-31879799 None:intergenic
GAGGACCAACTTTAATATTC+TGG 0.211960 2_1:-31878006 None:intergenic
GGCTATCACATAAAATTAAT+TGG 0.273476 2_1:-31880258 None:intergenic
AGAATATTCGTCGGAGGATT+AGG 0.284833 2_1:+31875111 Msa0205230:CDS
TCGAAAACTGTTCGAATCAT+TGG 0.286085 2_1:+31875158 Msa0205230:CDS
ATTGCTTTCACTTTCCGATT+TGG 0.294913 2_1:-31879134 None:intergenic
CATGATCCTTTCAAGTTCTT+GGG 0.298802 2_1:-31878389 None:intergenic
TTGCTTTCACTTTCCGATTT+GGG 0.304504 2_1:-31879133 None:intergenic
GTCACTGATGGCTTCAACTT+AGG 0.323626 2_1:+31879892 Msa0205230:CDS
GTATCGGAAGGTTCGCTCTC+TGG 0.324588 2_1:-31879451 None:intergenic
TTCGACTCATAAGGAGGATT+TGG 0.331025 2_1:+31876192 Msa0205230:CDS
CGATCTGCAAATGTTGAAAT+AGG 0.332142 2_1:+31880006 Msa0205230:CDS
ATGTTGGCATTGCAGTATAA+TGG 0.333790 2_1:+31876049 Msa0205230:intron
GGAACCGGCAGGGTACAAAA+TGG 0.340357 2_1:-31879821 None:intergenic
TGGTACCTTACTGAAAAGTT+TGG 0.345165 2_1:-31875265 None:intergenic
TAACGAACCGTTCTTAATCT+TGG 0.345426 2_1:-31876280 None:intergenic
AACAACAAAAGGCTTCATTA+AGG 0.347021 2_1:-31880379 None:intergenic
CTTCTAGATGGGCTGGGATC+TGG 0.347707 2_1:+31879202 Msa0205230:CDS
AAAAGTTGTGAAAGGCTAAA+TGG 0.349273 2_1:-31879760 None:intergenic
TTGTAGTACATGTCCGTTCC+AGG 0.355630 2_1:+31880334 Msa0205230:three_prime_UTR
TCTACAAAGCGTCTTGCATT+AGG 0.359623 2_1:-31876226 None:intergenic
TCGAATGTCATCGGTGGTTA+CGG 0.365656 2_1:-31875139 None:intergenic
GGGAGTCTGCCAAAGTTTCA+TGG 0.367925 2_1:+31879257 Msa0205230:CDS
GTCCGTTCCAGGGCAAGTTT+TGG 0.371902 2_1:+31880345 Msa0205230:three_prime_UTR
ACGATCAAGGTAATGCTCTT+TGG 0.378575 2_1:-31876110 None:intergenic
CATGGTGGCAAAAGAAATCT+TGG 0.379483 2_1:+31879710 Msa0205230:CDS
CAGATCCCAGCCCATCTAGA+AGG 0.381344 2_1:-31879201 None:intergenic
ATGAGTGGGGAAGCAGAAAT+TGG 0.383018 2_1:+31878130 Msa0205230:CDS
CTCTTCTATCACTCTTGTAT+TGG 0.388942 2_1:-31879551 None:intergenic
ATATTGAGAGGCTTTGCATC+TGG 0.390081 2_1:-31876250 None:intergenic
AAGCGAAAATCAGACAATAA+TGG 0.391857 2_1:-31880437 None:intergenic
ATTCTATTGTTAACAACAAA+AGG 0.394769 2_1:-31880390 None:intergenic
TCACTGATGGCTTCAACTTA+GGG 0.397187 2_1:+31879893 Msa0205230:CDS
CTTCTTCCTCCATGCTTGCA+AGG 0.400945 2_1:-31875068 None:intergenic
AGGATAAGTTATCTATGAAT+GGG 0.402189 2_1:+31878083 Msa0205230:CDS
GTTATCACTTGTTTATATGT+AGG 0.404324 2_1:-31879631 None:intergenic
GTTCTTTAGCCGTTTGTTCT+GGG 0.404623 2_1:-31879798 None:intergenic
AAAATGCAGACCCTTCTAGA+TGG 0.405551 2_1:+31879190 Msa0205230:CDS
GTTTCTAACACCAAGCATCT+TGG 0.410072 2_1:+31878220 Msa0205230:CDS
GTTGAGAAAATCGTTGAAAC+AGG 0.410291 2_1:+31879973 Msa0205230:CDS
AAAGCTAAAGCCGCTGTTAG+TGG 0.410378 2_1:+31880078 Msa0205230:CDS
GAGAAAATCACTTCCCAAAT+CGG 0.411171 2_1:+31879120 Msa0205230:CDS
TCCATACCCTTCAGTGGAAC+TGG 0.413684 2_1:+31877965 Msa0205230:CDS
GACTCCCCAAAATCATGTTC+TGG 0.414624 2_1:-31879241 None:intergenic
AAGGATAAGTTATCTATGAA+TGG 0.419930 2_1:+31878082 Msa0205230:CDS
ACAATCCTGCTTCTGCTGTA+TGG 0.419940 2_1:-31880147 None:intergenic
AACGAACCGTTCTTAATCTT+GGG 0.421343 2_1:-31876279 None:intergenic
CGAAAACTGTTCGAATCATT+GGG 0.426176 2_1:+31875159 Msa0205230:CDS
AAAGGCTTCATTAAGGAAGC+TGG 0.431128 2_1:-31880372 None:intergenic
TGTTGGCATTGCAGTATAAT+GGG 0.433137 2_1:+31876050 Msa0205230:intron
TTCTTTGATCACTTGTGTAT+TGG 0.434621 2_1:-31879509 None:intergenic
TCCAGTGAGTGCAAGCATAA+TGG 0.439320 2_1:+31879841 Msa0205230:CDS
TCTATCACTCTTGTATTGGT+AGG 0.441895 2_1:-31879547 None:intergenic
CTTCTGAGACCATGAAACTT+TGG 0.442387 2_1:-31879266 None:intergenic
TATCGGAAGGTTCGCTCTCT+GGG 0.442426 2_1:-31879450 None:intergenic
GCAGACCCTTCTAGATGGGC+TGG 0.447267 2_1:+31879195 Msa0205230:CDS
ATGCTTGCACTCACTGGAAC+CGG 0.452300 2_1:-31879836 None:intergenic
AATCGGAAAGTGAAAGCAAT+GGG 0.455057 2_1:+31879137 Msa0205230:CDS
TAACCGGCACAGGTGTTTCA+TGG 0.455965 2_1:+31879692 Msa0205230:CDS
TGAAAGGATCATGGAAAGTC+AGG 0.458480 2_1:+31878399 Msa0205230:CDS
GTAAGCGAGACTGCGACCTT+TGG 0.460541 2_1:-31875211 None:intergenic
GCTGATAAGAATACTATTGA+TGG 0.461820 2_1:+31879865 Msa0205230:CDS
TTCTTCTATCACTTGTGCAT+TGG 0.461928 2_1:-31879593 None:intergenic
TTCTGATGTTTCGACTCATA+AGG 0.462618 2_1:+31876183 Msa0205230:CDS
ATGTTATGCTGAGTTTCAGC+AGG 0.470768 2_1:-31879658 None:intergenic
CTTACTGAAAAGTTTGGAAA+GGG 0.474134 2_1:-31875259 None:intergenic
AAACGTGGTGAGAAGAAGTA+AGG 0.477728 2_1:+31880114 Msa0205230:CDS
ACCATTATGCTTGCACTCAC+TGG 0.478496 2_1:-31879842 None:intergenic
GTGCTTCTTTCCAAGATGCT+TGG 0.478695 2_1:-31878230 None:intergenic
ACATTTGCAGATCGTTCCCT+TGG 0.485077 2_1:-31879997 None:intergenic
TGTATTGGTAGGTTGAGATT+CGG 0.494596 2_1:-31879494 None:intergenic
TAGAATCAGCAAGGAAATCA+AGG 0.497334 2_1:-31875233 None:intergenic
TATGAATGGGGAAACTGAAA+GGG 0.498569 2_1:+31878096 Msa0205230:CDS
CTATGAATGGGGAAACTGAA+AGG 0.499445 2_1:+31878095 Msa0205230:CDS
CCACCATGAAACACCTGTGC+CGG 0.499567 2_1:-31879695 None:intergenic
CATTAGTTTCCCAGAACAAA+CGG 0.500069 2_1:+31879789 Msa0205230:CDS
TGGAGAGAACTTGTTGGTAA+AGG 0.503479 2_1:+31879295 Msa0205230:CDS
TATGTAGGTTGAGCTTCAGC+AGG 0.503686 2_1:-31879616 None:intergenic
TAAAACAAATATTGCGGAGG+AGG 0.509192 2_1:+31879045 Msa0205230:CDS
ACCAGTTCCACTGAAGGGTA+TGG 0.509579 2_1:-31877966 None:intergenic
ACACCAGGTGTAATGTTATG+AGG 0.512009 2_1:+31880213 Msa0205230:three_prime_UTR
GAACCGGCAGGGTACAAAAT+GGG 0.513709 2_1:-31879820 None:intergenic
AATTTCCATACAGCAGAAGC+AGG 0.514220 2_1:+31880142 Msa0205230:three_prime_UTR
GTGCTGATTCTTTGAAAGAG+TGG 0.514505 2_1:+31880052 Msa0205230:CDS
AGTTTCCAGAATATTAAAGT+TGG 0.515602 2_1:+31878001 Msa0205230:CDS
AAACAAACACCTTGCAAGCA+TGG 0.516117 2_1:+31875059 Msa0205230:exon
CCAAGAACTTGAAAGGATCA+TGG 0.517434 2_1:+31878390 Msa0205230:CDS
TCTATCACTTGTGCATTGGT+AGG 0.517571 2_1:-31879589 None:intergenic
AATGGGTGTGTGTGGAAAGG+TGG 0.524128 2_1:+31876067 Msa0205230:CDS
TTGATCACTTGTGTATTGGT+AGG 0.526944 2_1:-31879505 None:intergenic
TGGAAAGCTGAAACTTGAAA+AGG 0.537493 2_1:+31876087 Msa0205230:CDS
CAGACCCTTCTAGATGGGCT+GGG 0.539526 2_1:+31879196 Msa0205230:CDS
TCTTCGTGGAGAGAACTTGT+TGG 0.539823 2_1:+31879289 Msa0205230:CDS
TTGCACTCACTGGAACCGGC+AGG 0.540369 2_1:-31879832 None:intergenic
TGCTTACCAGTTCCACTGAA+GGG 0.542059 2_1:-31877971 None:intergenic
GGGAAAAGTTATCTATGAGT+GGG 0.542933 2_1:+31878116 Msa0205230:CDS
AGTTTCATCGTTCGTAGAAG+AGG 0.543105 2_1:-31879404 None:intergenic
CCAGCATGCTCACTATTCTC+TGG 0.543567 2_1:-31879925 None:intergenic
AAATCATGTTCTGGTTCAGT+AGG 0.544746 2_1:-31879232 None:intergenic
TCATAAGGAGGATTTGGTAA+AGG 0.545638 2_1:+31876198 Msa0205230:CDS
TACCAAAACTTGCCCTGGAA+CGG 0.550191 2_1:-31880347 None:intergenic
ACTGCGACCTTTGGTACGAA+TGG 0.551310 2_1:-31875202 None:intergenic
CCTTACTGAAAAGTTTGGAA+AGG 0.551504 2_1:-31875260 None:intergenic
CATGGTCTCAGAAGTCTTCG+TGG 0.551938 2_1:+31879275 Msa0205230:CDS
GAACGATGAAACTGAAGACA+TGG 0.555760 2_1:+31879414 Msa0205230:CDS
TGGATTACCAAAACTTGCCC+TGG 0.555837 2_1:-31880352 None:intergenic
TGTTCTGGGAAACTAATGTC+AGG 0.556549 2_1:-31879784 None:intergenic
AGTGGGGAAGCAGAAATTGG+TGG 0.558375 2_1:+31878133 Msa0205230:CDS
TTGGTAGGTTGAGATTCGGC+AGG 0.560339 2_1:-31879490 None:intergenic
CCACCTCATAACATTACACC+TGG 0.562454 2_1:-31880216 None:intergenic
CAGGGACCCAAGAACTTGAA+AGG 0.565422 2_1:+31878383 Msa0205230:CDS
GTGCTTACCAGTTCCACTGA+AGG 0.566725 2_1:-31877972 None:intergenic
TTGCTTTGCTGTTATACACC+AGG 0.567944 2_1:+31880198 Msa0205230:three_prime_UTR
AAAGAAATCTTGGACACAGT+TGG 0.568326 2_1:+31879720 Msa0205230:CDS
AAATGCAGACCCTTCTAGAT+GGG 0.570793 2_1:+31879191 Msa0205230:CDS
GAAGATCAGCAAAACTCTGA+TGG 0.574919 2_1:+31879370 Msa0205230:CDS
AAATCGTTGAAACAGGTCCA+AGG 0.575163 2_1:+31879980 Msa0205230:CDS
CTTGGGAAGTAAATATTGAG+AGG 0.582694 2_1:-31876262 None:intergenic
TGAGTCGAAACATCAGAAGC+TGG 0.586957 2_1:-31876178 None:intergenic
TGTCAGGCAAAAGTTGTGAA+AGG 0.589877 2_1:-31879768 None:intergenic
AGGGAAAAGTTATCTATGAG+TGG 0.590439 2_1:+31878115 Msa0205230:CDS
TGCAGTATAATGGGTGTGTG+TGG 0.590559 2_1:+31876059 Msa0205230:intron
TGCACTCACTGGAACCGGCA+GGG 0.590957 2_1:-31879831 None:intergenic
TTACTTCCCAAGATTAAGAA+CGG 0.593171 2_1:+31876273 Msa0205230:CDS
CTCGAAACCATTCGTACCAA+AGG 0.593811 2_1:+31875195 Msa0205230:CDS
AGATCCCAGCCCATCTAGAA+GGG 0.593994 2_1:-31879200 None:intergenic
GTCCAATAAAACAAATATTG+CGG 0.596702 2_1:+31879039 Msa0205230:CDS
TTGGTAGGCAGAGATTCAGC+AGG 0.605263 2_1:-31879574 None:intergenic
AGAGAACTTGTTGGTAAAGG+AGG 0.605841 2_1:+31879298 Msa0205230:CDS
CACTGATGGCTTCAACTTAG+GGG 0.606207 2_1:+31879894 Msa0205230:CDS
TGTAGTACATGTCCGTTCCA+GGG 0.607946 2_1:+31880335 Msa0205230:three_prime_UTR
GAGCAAGAGCGATTCTAGCA+AGG 0.611834 2_1:+31879090 Msa0205230:CDS
ATTGATGGAACTGTCACTGA+TGG 0.616571 2_1:+31879880 Msa0205230:CDS
AGAGCAGTGAGAATATTCGT+CGG 0.618455 2_1:+31875102 Msa0205230:CDS
AAATCGGAAAGTGAAAGCAA+TGG 0.618747 2_1:+31879136 Msa0205230:CDS
GTAGATAGTGCAACAGATGA+TGG 0.626664 2_1:+31878298 Msa0205230:CDS
GGATAAGTTATCTATGAATG+GGG 0.627287 2_1:+31878084 Msa0205230:CDS
TGATGTTTCGACTCATAAGG+AGG 0.628597 2_1:+31876186 Msa0205230:CDS
TCTTCAGCAGAATCAAACTT+CGG 0.629095 2_1:-31879352 None:intergenic
AATCGTTGAAACAGGTCCAA+GGG 0.632924 2_1:+31879981 Msa0205230:CDS
AAAGGGATTTAGAATCAGCA+AGG 0.632981 2_1:-31875242 None:intergenic
AAAACAAAGCAGCTTTGACA+GGG 0.636062 2_1:+31878365 Msa0205230:CDS
TATAATGGGTGTGTGTGGAA+AGG 0.637628 2_1:+31876064 Msa0205230:CDS
GTTAAATCCATACCCTTCAG+TGG 0.639356 2_1:+31877959 Msa0205230:CDS
CCAGAGAATAGTGAGCATGC+TGG 0.642844 2_1:+31879925 Msa0205230:CDS
AACGTGGTGAGAAGAAGTAA+GGG 0.648256 2_1:+31880115 Msa0205230:CDS
GGAAAAGTTATCTATGAGTG+GGG 0.649648 2_1:+31878117 Msa0205230:CDS
CAATAAAACAAATATTGCGG+AGG 0.654109 2_1:+31879042 Msa0205230:CDS
TTTGAGTGATCCACTAACAG+CGG 0.654682 2_1:-31880088 None:intergenic
GTTGCGTCTAGTACCCCTGT+AGG 0.660935 2_1:+31879160 Msa0205230:CDS
AAACTTCGGCAATATGAGAG+AGG 0.671206 2_1:-31879338 None:intergenic
CCAGGTGTAATGTTATGAGG+TGG 0.685775 2_1:+31880216 Msa0205230:three_prime_UTR
GCAGTGAGAATATTCGTCGG+AGG 0.687502 2_1:+31875105 Msa0205230:CDS
CCGGCACAGGTGTTTCATGG+TGG 0.696551 2_1:+31879695 Msa0205230:CDS
GTCGAAACATCAGAAGCTGG+TGG 0.697024 2_1:-31876175 None:intergenic
GGATCACTCAAAAGAAAACG+TGG 0.708325 2_1:+31880099 Msa0205230:CDS
CAAACACCTTGCAAGCATGG+AGG 0.716048 2_1:+31875062 Msa0205230:exon
TAGAATTGATGAAAACCACA+TGG 0.725385 2_1:-31880279 None:intergenic
ATCGGAAAGTGAAAGCAATG+GGG 0.734526 2_1:+31879138 Msa0205230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAAGAATTAATTTAA+GGG - chr2_1:31876001-31876020 None:intergenic 10.0%
!! AAGAAAAAAGAATTAATTTA+AGG - chr2_1:31876002-31876021 None:intergenic 10.0%
!! TTTAAAAGTAATGATTATGT+TGG + chr2_1:31876033-31876052 Msa0205230:intron 15.0%
!! AAATAAATAAATGAGTAAAC+AGG - chr2_1:31876315-31876334 None:intergenic 15.0%
!!! ATTTATTTTGTTATTCGTTA+CGG - chr2_1:31877029-31877048 None:intergenic 15.0%
!! AATAAATTTACTTAATCTGA+AGG + chr2_1:31877042-31877061 Msa0205230:intron 15.0%
!! ATAAATTTACTTAATCTGAA+GGG + chr2_1:31877043-31877062 Msa0205230:intron 15.0%
!!! TTTTTTTCTCAACAAATTAA+GGG - chr2_1:31877529-31877548 None:intergenic 15.0%
!!! ATTTTTTTCTCAACAAATTA+AGG - chr2_1:31877530-31877549 None:intergenic 15.0%
!! AAATCTGTATAATTAAACAA+TGG - chr2_1:31877861-31877880 None:intergenic 15.0%
!!! CGTATCATTTATTTTTTATT+TGG + chr2_1:31878429-31878448 Msa0205230:intron 15.0%
!!! TCATTTATTTTTTATTTGGA+AGG + chr2_1:31878433-31878452 Msa0205230:intron 15.0%
!!! CATTTATTTTTTATTTGGAA+GGG + chr2_1:31878434-31878453 Msa0205230:intron 15.0%
!!! GTTCAAATAAATATAGTTTT+AGG + chr2_1:31878721-31878740 Msa0205230:intron 15.0%
!! ATTGTGTAAAAAATTAAATG+AGG - chr2_1:31880309-31880328 None:intergenic 15.0%
!!! TTTTGTTTTATTTCTTTTGT+TGG + chr2_1:31880463-31880482 Msa0205230:three_prime_UTR 15.0%
!! AAGAATTAATTTAAGGGTTT+AGG - chr2_1:31875995-31876014 None:intergenic 20.0%
!!! TTTATTGTTTTTGCTATTTG+TGG + chr2_1:31876355-31876374 Msa0205230:intron 20.0%
!! TGTTAACTTAATCAAAATCA+AGG - chr2_1:31876776-31876795 None:intergenic 20.0%
!! GTACACAAAATTTAGAAAAT+AGG + chr2_1:31876818-31876837 Msa0205230:intron 20.0%
!! CAAAATTTAGAAAATAGGAA+AGG + chr2_1:31876823-31876842 Msa0205230:intron 20.0%
!!! TTTATTTTGTTATTCGTTAC+GGG - chr2_1:31877028-31877047 None:intergenic 20.0%
!! TAAATTTACTTAATCTGAAG+GGG + chr2_1:31877044-31877063 Msa0205230:intron 20.0%
!! TTAGTTACATTTCTTGAATA+AGG - chr2_1:31877472-31877491 None:intergenic 20.0%
!! TTGATTACAAAAGTCTATTT+AGG + chr2_1:31877652-31877671 Msa0205230:intron 20.0%
!! TTTGTATACAAAACAAAACT+AGG - chr2_1:31878694-31878713 None:intergenic 20.0%
!!! GATTACTTTTATCAAAGAAT+AGG + chr2_1:31878970-31878989 Msa0205230:intron 20.0%
!! ATTCTATTGTTAACAACAAA+AGG - chr2_1:31880393-31880412 None:intergenic 20.0%
! AACTAGTTAAAACAGCTTAT+AGG + chr2_1:31875533-31875552 Msa0205230:intron 25.0%
! GCTTATAGGTTATATGAAAA+CGG + chr2_1:31875547-31875566 Msa0205230:intron 25.0%
! AAAACAAAGACTTCTTTACA+CGG - chr2_1:31875696-31875715 None:intergenic 25.0%
! ATATGAATTATGAATCAGCT+TGG + chr2_1:31875724-31875743 Msa0205230:intron 25.0%
!! GCATAAGTTTTTATAGCTTA+TGG + chr2_1:31875931-31875950 Msa0205230:intron 25.0%
!! TTAAGTTGTTTATCCATAGA+GGG + chr2_1:31875969-31875988 Msa0205230:intron 25.0%
!!! ATTCTTTTTTCAAACGATCA+AGG - chr2_1:31876126-31876145 None:intergenic 25.0%
! TTGATCGTTTGAAAAAAGAA+TGG + chr2_1:31876125-31876144 Msa0205230:CDS 25.0%
! TGATCGTTTGAAAAAAGAAT+GGG + chr2_1:31876126-31876145 Msa0205230:CDS 25.0%
! AATGAGTAAACAGGTTATAA+TGG - chr2_1:31876306-31876325 None:intergenic 25.0%
!! CTTTTATATTGTGATGAGAT+AGG + chr2_1:31876402-31876421 Msa0205230:intron 25.0%
!!! AGAATGATTTTGGAATGATT+AGG + chr2_1:31876589-31876608 Msa0205230:intron 25.0%
!!! GAATGATTTTGGAATGATTA+GGG + chr2_1:31876590-31876609 Msa0205230:intron 25.0%
! TGTTATCTAACCATAATTCT+CGG - chr2_1:31876720-31876739 None:intergenic 25.0%
! GAATTATGGTTAGATAACAT+AGG + chr2_1:31876721-31876740 Msa0205230:intron 25.0%
!!! TTATTTTGTTATTCGTTACG+GGG - chr2_1:31877027-31877046 None:intergenic 25.0%
! TTGCATTGCATAATATAATC+AGG + chr2_1:31877072-31877091 Msa0205230:intron 25.0%
!! GTATAATGTCATTTGAAAAG+TGG - chr2_1:31877569-31877588 None:intergenic 25.0%
! CACTTGGTTGTATTAATTAA+GGG - chr2_1:31877609-31877628 None:intergenic 25.0%
! ACACTTGGTTGTATTAATTA+AGG - chr2_1:31877610-31877629 None:intergenic 25.0%
! AGTATATTAAGAGAAGTAGA+TGG - chr2_1:31877712-31877731 None:intergenic 25.0%
! AAATTGTAGTGTTTGTGAAA+AGG + chr2_1:31877739-31877758 Msa0205230:intron 25.0%
! AATTGTAGTGTTTGTGAAAA+GGG + chr2_1:31877740-31877759 Msa0205230:intron 25.0%
! AGTTTCCAGAATATTAAAGT+TGG + chr2_1:31878001-31878020 Msa0205230:CDS 25.0%
!!! TTATCCTTTTTTGCGATAAA+AGG - chr2_1:31878070-31878089 None:intergenic 25.0%
! AAGGATAAGTTATCTATGAA+TGG + chr2_1:31878082-31878101 Msa0205230:CDS 25.0%
! AGGATAAGTTATCTATGAAT+GGG + chr2_1:31878083-31878102 Msa0205230:CDS 25.0%
!! ATCTATGTAACTGTGATTTT+TGG + chr2_1:31879004-31879023 Msa0205230:intron 25.0%
! GTCCAATAAAACAAATATTG+CGG + chr2_1:31879039-31879058 Msa0205230:CDS 25.0%
! GTTATCACTTGTTTATATGT+AGG - chr2_1:31879634-31879653 None:intergenic 25.0%
! GGCTATCACATAAAATTAAT+TGG - chr2_1:31880261-31880280 None:intergenic 25.0%
CTTACTGAAAAGTTTGGAAA+GGG - chr2_1:31875262-31875281 None:intergenic 30.0%
TTAAGTGAAGTGAGAAAGAT+TGG - chr2_1:31875288-31875307 None:intergenic 30.0%
!! CTTGTTTTCATAAGCTCTTT+AGG + chr2_1:31875508-31875527 Msa0205230:intron 30.0%
! ATACATGTGACTTTAGAAGT+TGG + chr2_1:31875619-31875638 Msa0205230:intron 30.0%
! GTTAAGTTGTTTATCCATAG+AGG + chr2_1:31875968-31875987 Msa0205230:intron 30.0%
TTACTTCCCAAGATTAAGAA+CGG + chr2_1:31876273-31876292 Msa0205230:CDS 30.0%
ATATTGTGATGAGATAGGTT+TGG + chr2_1:31876407-31876426 Msa0205230:intron 30.0%
TGATATATTGCAGGTATTTG+CGG + chr2_1:31876463-31876482 Msa0205230:intron 30.0%
GCGGTTAAATATCAATGATA+CGG + chr2_1:31876482-31876501 Msa0205230:intron 30.0%
TTATGGATAGTAGTTGTGAT+CGG + chr2_1:31876561-31876580 Msa0205230:intron 30.0%
AAAATAGTGTAGAGAACAAG+TGG + chr2_1:31876630-31876649 Msa0205230:intron 30.0%
GATTAAGTTAACACTGCATA+TGG + chr2_1:31876783-31876802 Msa0205230:intron 30.0%
!!! AGCACTACATCTGTTTTAAT+TGG + chr2_1:31877135-31877154 Msa0205230:intron 30.0%
!!! ACTACATCTGTTTTAATTGG+TGG + chr2_1:31877138-31877157 Msa0205230:intron 30.0%
! TGTTTTCAATCCAAAACTCT+TGG - chr2_1:31877168-31877187 None:intergenic 30.0%
! ATATCAAGGTGTATAGGTTT+TGG - chr2_1:31877275-31877294 None:intergenic 30.0%
ATTATATTAGCCCAGAATGT+AGG + chr2_1:31877389-31877408 Msa0205230:intron 30.0%
TTATATTAGCCCAGAATGTA+GGG + chr2_1:31877390-31877409 Msa0205230:intron 30.0%
AGTTACAAGAAAAGCCTTAA+AGG - chr2_1:31877426-31877445 None:intergenic 30.0%
GAAAGAGGTCAAAAGATTTA+GGG - chr2_1:31877507-31877526 None:intergenic 30.0%
!! TAGGAGCATTTATACACAAA+AGG + chr2_1:31877671-31877690 Msa0205230:intron 30.0%
!! AGGAGCATTTATACACAAAA+GGG + chr2_1:31877672-31877691 Msa0205230:intron 30.0%
AAATGCACTATTTCCAAGAA+AGG + chr2_1:31877788-31877807 Msa0205230:intron 30.0%
GGATAAGTTATCTATGAATG+GGG + chr2_1:31878084-31878103 Msa0205230:CDS 30.0%
CAAGCTTCTTGAAAAAGAAA+AGG + chr2_1:31878198-31878217 Msa0205230:CDS 30.0%
! GTTTTTCTTTGTTGCAATGT+TGG - chr2_1:31878350-31878369 None:intergenic 30.0%
!!! AGTAAATTCAGGTTGGTTTT+TGG + chr2_1:31878461-31878480 Msa0205230:intron 30.0%
!!! GTAAATTCAGGTTGGTTTTT+GGG + chr2_1:31878462-31878481 Msa0205230:intron 30.0%
TGTTAAAAAGCTGTTTAGCT+AGG + chr2_1:31878573-31878592 Msa0205230:intron 30.0%
!!! CTAGTTCGTTGTGTTTTTTA+AGG - chr2_1:31878801-31878820 None:intergenic 30.0%
! ACGTTTAGAGCTTATTTGAT+TGG - chr2_1:31878877-31878896 None:intergenic 30.0%
TGACACTAACACTTAACAAA+GGG - chr2_1:31878950-31878969 None:intergenic 30.0%
!!! CTCCGCAATATTTGTTTTAT+TGG - chr2_1:31879044-31879063 None:intergenic 30.0%
CAATAAAACAAATATTGCGG+AGG + chr2_1:31879042-31879061 Msa0205230:CDS 30.0%
!! CTCTTCTATCACTTTTGTAT+CGG - chr2_1:31879470-31879489 None:intergenic 30.0%
TTCTTTGATCACTTGTGTAT+TGG - chr2_1:31879512-31879531 None:intergenic 30.0%
AACATAGCACCAAAAATAAC+CGG + chr2_1:31879676-31879695 Msa0205230:CDS 30.0%
AAAAGTTGTGAAAGGCTAAA+TGG - chr2_1:31879763-31879782 None:intergenic 30.0%
GCTGATAAGAATACTATTGA+TGG + chr2_1:31879865-31879884 Msa0205230:CDS 30.0%
! AATTTTATGTGATAGCCATG+TGG + chr2_1:31880264-31880283 Msa0205230:three_prime_UTR 30.0%
TAGAATTGATGAAAACCACA+TGG - chr2_1:31880282-31880301 None:intergenic 30.0%
AACAACAAAAGGCTTCATTA+AGG - chr2_1:31880382-31880401 None:intergenic 30.0%
ATGGAACTAACCTCAAAAAA+CGG - chr2_1:31880421-31880440 None:intergenic 30.0%
AAGCGAAAATCAGACAATAA+TGG - chr2_1:31880440-31880459 None:intergenic 30.0%
! GAACAGTTTTCGAATGTCAT+CGG - chr2_1:31875151-31875170 None:intergenic 35.0%
TCGAAAACTGTTCGAATCAT+TGG + chr2_1:31875158-31875177 Msa0205230:CDS 35.0%
CGAAAACTGTTCGAATCATT+GGG + chr2_1:31875159-31875178 Msa0205230:CDS 35.0%
TAGAATCAGCAAGGAAATCA+AGG - chr2_1:31875236-31875255 None:intergenic 35.0%
! AAAGGGATTTAGAATCAGCA+AGG - chr2_1:31875245-31875264 None:intergenic 35.0%
CCTTACTGAAAAGTTTGGAA+AGG - chr2_1:31875263-31875282 None:intergenic 35.0%
! CCTTTCCAAACTTTTCAGTA+AGG + chr2_1:31875260-31875279 Msa0205230:CDS 35.0%
TGGTACCTTACTGAAAAGTT+TGG - chr2_1:31875268-31875287 None:intergenic 35.0%
! GCGTTATTTGAGTTTATCTG+CGG + chr2_1:31875442-31875461 Msa0205230:intron 35.0%
AAAACAGCTCACATGTCATA+AGG - chr2_1:31875810-31875829 None:intergenic 35.0%
AAGTTGTCCTAGAAAGCTTA+CGG - chr2_1:31875843-31875862 None:intergenic 35.0%
ATGTTGGCATTGCAGTATAA+TGG + chr2_1:31876049-31876068 Msa0205230:intron 35.0%
TGTTGGCATTGCAGTATAAT+GGG + chr2_1:31876050-31876069 Msa0205230:intron 35.0%
TGGAAAGCTGAAACTTGAAA+AGG + chr2_1:31876087-31876106 Msa0205230:CDS 35.0%
TTCTGATGTTTCGACTCATA+AGG + chr2_1:31876183-31876202 Msa0205230:CDS 35.0%
! TCATAAGGAGGATTTGGTAA+AGG + chr2_1:31876198-31876217 Msa0205230:CDS 35.0%
CTTGGGAAGTAAATATTGAG+AGG - chr2_1:31876265-31876284 None:intergenic 35.0%
AACGAACCGTTCTTAATCTT+GGG - chr2_1:31876282-31876301 None:intergenic 35.0%
TAACGAACCGTTCTTAATCT+TGG - chr2_1:31876283-31876302 None:intergenic 35.0%
GCTATTTGTGGAAAAGTCTA+TGG + chr2_1:31876367-31876386 Msa0205230:intron 35.0%
TGCGATTCTTGATATATTGC+AGG + chr2_1:31876454-31876473 Msa0205230:intron 35.0%
CATCAAAAGCCTTGACATTA+AGG + chr2_1:31876526-31876545 Msa0205230:intron 35.0%
TATGGATAGTAGTTGTGATC+GGG + chr2_1:31876562-31876581 Msa0205230:intron 35.0%
! TGGAATGATTAGGGTTTTCT+AGG + chr2_1:31876599-31876618 Msa0205230:intron 35.0%
! GGAATGATTAGGGTTTTCTA+GGG + chr2_1:31876600-31876619 Msa0205230:intron 35.0%
!! ACAAGTGGATTGAAGGATAT+TGG + chr2_1:31876645-31876664 Msa0205230:intron 35.0%
!! CAAGTGGATTGAAGGATATT+GGG + chr2_1:31876646-31876665 Msa0205230:intron 35.0%
AGGATATTGGGAATAGTTTG+AGG + chr2_1:31876658-31876677 Msa0205230:intron 35.0%
GGATATTGGGAATAGTTTGA+GGG + chr2_1:31876659-31876678 Msa0205230:intron 35.0%
CATAGTAGAACCGAGAATTA+TGG + chr2_1:31876707-31876726 Msa0205230:intron 35.0%
GAAAATAGGAAAGGAAACCA+TGG + chr2_1:31876832-31876851 Msa0205230:intron 35.0%
! TGGTTTACGATAGAGCATTA+TGG - chr2_1:31876929-31876948 None:intergenic 35.0%
TCGTAAACCAAACGAATTTG+CGG + chr2_1:31876939-31876958 Msa0205230:intron 35.0%
AGATGTAGTGCTTTCAATCA+TGG - chr2_1:31877127-31877146 None:intergenic 35.0%
TTTCAATCCAAAACTCTTGG+AGG - chr2_1:31877165-31877184 None:intergenic 35.0%
TAGAGAGTCTCAATCATTAC+TGG - chr2_1:31877195-31877214 None:intergenic 35.0%
AACCTATACACCTTGATATG+TGG + chr2_1:31877276-31877295 Msa0205230:intron 35.0%
ATAATTCGTGCCACATATCA+AGG - chr2_1:31877289-31877308 None:intergenic 35.0%
CAAATATCTCCCTACATTCT+GGG - chr2_1:31877402-31877421 None:intergenic 35.0%
TCAAATATCTCCCTACATTC+TGG - chr2_1:31877403-31877422 None:intergenic 35.0%
AGGGAGATATTTGACCTTTA+AGG + chr2_1:31877409-31877428 Msa0205230:intron 35.0%
GTCAAAAGATTTAGGGATAG+AGG - chr2_1:31877500-31877519 None:intergenic 35.0%
GGAAAGAGGTCAAAAGATTT+AGG - chr2_1:31877508-31877527 None:intergenic 35.0%
CTCAACAAATTAAGGGAAAG+AGG - chr2_1:31877522-31877541 None:intergenic 35.0%
TGAAAAGTGGCTTACACTAA+GGG - chr2_1:31877556-31877575 None:intergenic 35.0%
TTGAAAAGTGGCTTACACTA+AGG - chr2_1:31877557-31877576 None:intergenic 35.0%
CAAGAAAGGATTTCCACATT+GGG + chr2_1:31877802-31877821 Msa0205230:intron 35.0%
ATGGAAATGCTAACATGTGA+GGG - chr2_1:31877842-31877861 None:intergenic 35.0%
AATGGAAATGCTAACATGTG+AGG - chr2_1:31877843-31877862 None:intergenic 35.0%
GAGGACCAACTTTAATATTC+TGG - chr2_1:31878009-31878028 None:intergenic 35.0%
CACAATCACAAAAATGCACA+GGG - chr2_1:31878033-31878052 None:intergenic 35.0%
TCACAATCACAAAAATGCAC+AGG - chr2_1:31878034-31878053 None:intergenic 35.0%
! TGTGCATTTTTGTGATTGTG+AGG + chr2_1:31878033-31878052 Msa0205230:CDS 35.0%
! CAGTCCTTTTATCGCAAAAA+AGG + chr2_1:31878063-31878082 Msa0205230:CDS 35.0%
TATGAATGGGGAAACTGAAA+GGG + chr2_1:31878096-31878115 Msa0205230:CDS 35.0%
AGGGAAAAGTTATCTATGAG+TGG + chr2_1:31878115-31878134 Msa0205230:CDS 35.0%
GGGAAAAGTTATCTATGAGT+GGG + chr2_1:31878116-31878135 Msa0205230:CDS 35.0%
GGAAAAGTTATCTATGAGTG+GGG + chr2_1:31878117-31878136 Msa0205230:CDS 35.0%
! AAAAACAAAGCAGCTTTGAC+AGG + chr2_1:31878364-31878383 Msa0205230:CDS 35.0%
! AAAACAAAGCAGCTTTGACA+GGG + chr2_1:31878365-31878384 Msa0205230:CDS 35.0%
!! CATGATCCTTTCAAGTTCTT+GGG - chr2_1:31878392-31878411 None:intergenic 35.0%
TTTGCCATAACTAGCTGATA+AGG + chr2_1:31878489-31878508 Msa0205230:intron 35.0%
ACTACCTTATCAGCTAGTTA+TGG - chr2_1:31878496-31878515 None:intergenic 35.0%
CTGACACTAACACTTAACAA+AGG - chr2_1:31878951-31878970 None:intergenic 35.0%
!!! AACTGTGATTTTTGGTCTTC+AGG + chr2_1:31879012-31879031 Msa0205230:intron 35.0%
!!! TGATTTTTGGTCTTCAGGAA+TGG + chr2_1:31879017-31879036 Msa0205230:intron 35.0%
TAAAACAAATATTGCGGAGG+AGG + chr2_1:31879045-31879064 Msa0205230:CDS 35.0%
GAGAAAATCACTTCCCAAAT+CGG + chr2_1:31879120-31879139 Msa0205230:CDS 35.0%
TTGCTTTCACTTTCCGATTT+GGG - chr2_1:31879136-31879155 None:intergenic 35.0%
ATTGCTTTCACTTTCCGATT+TGG - chr2_1:31879137-31879156 None:intergenic 35.0%
AAATCGGAAAGTGAAAGCAA+TGG + chr2_1:31879136-31879155 Msa0205230:CDS 35.0%
AATCGGAAAGTGAAAGCAAT+GGG + chr2_1:31879137-31879156 Msa0205230:CDS 35.0%
!! AAATCATGTTCTGGTTCAGT+AGG - chr2_1:31879235-31879254 None:intergenic 35.0%
! ACTGAACCAGAACATGATTT+TGG + chr2_1:31879235-31879254 Msa0205230:CDS 35.0%
! CTGAACCAGAACATGATTTT+GGG + chr2_1:31879236-31879255 Msa0205230:CDS 35.0%
! TGAACCAGAACATGATTTTG+GGG + chr2_1:31879237-31879256 Msa0205230:CDS 35.0%
TCTTCAGCAGAATCAAACTT+CGG - chr2_1:31879355-31879374 None:intergenic 35.0%
!! TCTATCACTTTTGTATCGGA+AGG - chr2_1:31879466-31879485 None:intergenic 35.0%
! TGTATTGGTAGGTTGAGATT+CGG - chr2_1:31879497-31879516 None:intergenic 35.0%
! TTGATCACTTGTGTATTGGT+AGG - chr2_1:31879508-31879527 None:intergenic 35.0%
! TCTATCACTCTTGTATTGGT+AGG - chr2_1:31879550-31879569 None:intergenic 35.0%
CTCTTCTATCACTCTTGTAT+TGG - chr2_1:31879554-31879573 None:intergenic 35.0%
TTCTTCTATCACTTGTGCAT+TGG - chr2_1:31879596-31879615 None:intergenic 35.0%
AAAGAAATCTTGGACACAGT+TGG + chr2_1:31879720-31879739 Msa0205230:CDS 35.0%
! CATTAGTTTCCCAGAACAAA+CGG + chr2_1:31879789-31879808 Msa0205230:CDS 35.0%
! TCAACGATTTTCTCAACTAC+TGG - chr2_1:31879970-31879989 None:intergenic 35.0%
GTTGAGAAAATCGTTGAAAC+AGG + chr2_1:31879973-31879992 Msa0205230:CDS 35.0%
CGATCTGCAAATGTTGAAAT+AGG + chr2_1:31880006-31880025 Msa0205230:CDS 35.0%
!!! AGAATTAACCCCGTTTTTTG+AGG + chr2_1:31880408-31880427 Msa0205230:three_prime_UTR 35.0%
TGGAACTAACCTCAAAAAAC+GGG - chr2_1:31880420-31880439 None:intergenic 35.0%
AAACAAACACCTTGCAAGCA+TGG + chr2_1:31875059-31875078 Msa0205230:exon 40.0%
AGAGCAGTGAGAATATTCGT+CGG + chr2_1:31875102-31875121 Msa0205230:CDS 40.0%
AGAATATTCGTCGGAGGATT+AGG + chr2_1:31875111-31875130 Msa0205230:CDS 40.0%
TAGACACTTACGAGACTGTT+TGG + chr2_1:31875468-31875487 Msa0205230:intron 40.0%
AGACACTTACGAGACTGTTT+GGG + chr2_1:31875469-31875488 Msa0205230:intron 40.0%
CTTGATTCCGTAAGCTTTCT+AGG + chr2_1:31875833-31875852 Msa0205230:intron 40.0%
!! TATAATGGGTGTGTGTGGAA+AGG + chr2_1:31876064-31876083 Msa0205230:CDS 40.0%
ACGATCAAGGTAATGCTCTT+TGG - chr2_1:31876113-31876132 None:intergenic 40.0%
TGATGTTTCGACTCATAAGG+AGG + chr2_1:31876186-31876205 Msa0205230:CDS 40.0%
TTCGACTCATAAGGAGGATT+TGG + chr2_1:31876192-31876211 Msa0205230:CDS 40.0%
! TCTACAAAGCGTCTTGCATT+AGG - chr2_1:31876229-31876248 None:intergenic 40.0%
ATATTGAGAGGCTTTGCATC+TGG - chr2_1:31876253-31876272 None:intergenic 40.0%
! TGATGAGATAGGTTTGGTCA+AGG + chr2_1:31876413-31876432 Msa0205230:intron 40.0%
ACTATCCATAACTGTGATCG+TGG - chr2_1:31876552-31876571 None:intergenic 40.0%
! ATCGGGTGGAAGAATGATTT+TGG + chr2_1:31876579-31876598 Msa0205230:intron 40.0%
!! ATGATTAGGGTTTTCTAGGG+TGG + chr2_1:31876603-31876622 Msa0205230:intron 40.0%
!! GTAGAGAACAAGTGGATTGA+AGG + chr2_1:31876638-31876657 Msa0205230:intron 40.0%
!! TTGTTGTTTGCTGAAGTCCA+TGG - chr2_1:31876852-31876871 None:intergenic 40.0%
TGCCACATATCAAGGTGTAT+AGG - chr2_1:31877281-31877300 None:intergenic 40.0%
ACGAATTATTGTGTAGCGCT+AGG + chr2_1:31877300-31877319 Msa0205230:intron 40.0%
ATAAGGATGCAGTTAGCAAG+AGG - chr2_1:31877455-31877474 None:intergenic 40.0%
TCTTCATCGTTCAAGACACT+TGG - chr2_1:31877625-31877644 None:intergenic 40.0%
CCAATGTGGAAATCCTTTCT+TGG - chr2_1:31877804-31877823 None:intergenic 40.0%
CCAAGAAAGGATTTCCACAT+TGG + chr2_1:31877801-31877820 Msa0205230:intron 40.0%
ACATGTTAAGGAACCCAATG+TGG - chr2_1:31877818-31877837 None:intergenic 40.0%
TGCTACAAATATACCTGTGC+AGG + chr2_1:31877937-31877956 Msa0205230:intron 40.0%
GTTAAATCCATACCCTTCAG+TGG + chr2_1:31877959-31877978 Msa0205230:CDS 40.0%
CTATGAATGGGGAAACTGAA+AGG + chr2_1:31878095-31878114 Msa0205230:CDS 40.0%
GTTTCTAACACCAAGCATCT+TGG + chr2_1:31878220-31878239 Msa0205230:CDS 40.0%
GTAGATAGTGCAACAGATGA+TGG + chr2_1:31878298-31878317 Msa0205230:CDS 40.0%
!! CCATGATCCTTTCAAGTTCT+TGG - chr2_1:31878393-31878412 None:intergenic 40.0%
CCAAGAACTTGAAAGGATCA+TGG + chr2_1:31878390-31878409 Msa0205230:CDS 40.0%
TGAAAGGATCATGGAAAGTC+AGG + chr2_1:31878399-31878418 Msa0205230:CDS 40.0%
GGAAGGGAAGTAGTAAATTC+AGG + chr2_1:31878450-31878469 Msa0205230:intron 40.0%
GGGAAGTAGTAAATTCAGGT+TGG + chr2_1:31878454-31878473 Msa0205230:intron 40.0%
GTTTAGCTAGGTTATTCAGC+TGG + chr2_1:31878585-31878604 Msa0205230:intron 40.0%
TAACACTTAACAAAGGGCTG+TGG - chr2_1:31878944-31878963 None:intergenic 40.0%
AACCCATTGAAGCGCAAAAA+AGG + chr2_1:31879068-31879087 Msa0205230:CDS 40.0%
!!! CTCCTTTTTTGCGCTTCAAT+GGG - chr2_1:31879073-31879092 None:intergenic 40.0%
ATCGGAAAGTGAAAGCAATG+GGG + chr2_1:31879138-31879157 Msa0205230:CDS 40.0%
! CATTTTACTCTTGCCTACAG+GGG - chr2_1:31879176-31879195 None:intergenic 40.0%
! GCATTTTACTCTTGCCTACA+GGG - chr2_1:31879177-31879196 None:intergenic 40.0%
! TGCATTTTACTCTTGCCTAC+AGG - chr2_1:31879178-31879197 None:intergenic 40.0%
AAAATGCAGACCCTTCTAGA+TGG + chr2_1:31879190-31879209 Msa0205230:CDS 40.0%
AAATGCAGACCCTTCTAGAT+GGG + chr2_1:31879191-31879210 Msa0205230:CDS 40.0%
!! CTTCTGAGACCATGAAACTT+TGG - chr2_1:31879269-31879288 None:intergenic 40.0%
!! TGGAGAGAACTTGTTGGTAA+AGG + chr2_1:31879295-31879314 Msa0205230:CDS 40.0%
!! AGAGAACTTGTTGGTAAAGG+AGG + chr2_1:31879298-31879317 Msa0205230:CDS 40.0%
AAACTTCGGCAATATGAGAG+AGG - chr2_1:31879341-31879360 None:intergenic 40.0%
GAAGATCAGCAAAACTCTGA+TGG + chr2_1:31879370-31879389 Msa0205230:CDS 40.0%
AGTTTCATCGTTCGTAGAAG+AGG - chr2_1:31879407-31879426 None:intergenic 40.0%
GAACGATGAAACTGAAGACA+TGG + chr2_1:31879414-31879433 Msa0205230:CDS 40.0%
! TCTATCACTTGTGCATTGGT+AGG - chr2_1:31879592-31879611 None:intergenic 40.0%
ATGTTATGCTGAGTTTCAGC+AGG - chr2_1:31879661-31879680 None:intergenic 40.0%
CATGGTGGCAAAAGAAATCT+TGG + chr2_1:31879710-31879729 Msa0205230:CDS 40.0%
TGTCAGGCAAAAGTTGTGAA+AGG - chr2_1:31879771-31879790 None:intergenic 40.0%
!! TGTTCTGGGAAACTAATGTC+AGG - chr2_1:31879787-31879806 None:intergenic 40.0%
GTTCTTTAGCCGTTTGTTCT+GGG - chr2_1:31879801-31879820 None:intergenic 40.0%
ATTGATGGAACTGTCACTGA+TGG + chr2_1:31879880-31879899 Msa0205230:CDS 40.0%
TCACTGATGGCTTCAACTTA+GGG + chr2_1:31879893-31879912 Msa0205230:CDS 40.0%
AAATCGTTGAAACAGGTCCA+AGG + chr2_1:31879980-31879999 Msa0205230:CDS 40.0%
AATCGTTGAAACAGGTCCAA+GGG + chr2_1:31879981-31880000 Msa0205230:CDS 40.0%
!! GTGCTGATTCTTTGAAAGAG+TGG + chr2_1:31880052-31880071 Msa0205230:CDS 40.0%
TTTGAGTGATCCACTAACAG+CGG - chr2_1:31880091-31880110 None:intergenic 40.0%
GGATCACTCAAAAGAAAACG+TGG + chr2_1:31880099-31880118 Msa0205230:CDS 40.0%
AAACGTGGTGAGAAGAAGTA+AGG + chr2_1:31880114-31880133 Msa0205230:CDS 40.0%
AACGTGGTGAGAAGAAGTAA+GGG + chr2_1:31880115-31880134 Msa0205230:CDS 40.0%
AATTTCCATACAGCAGAAGC+AGG + chr2_1:31880142-31880161 Msa0205230:three_prime_UTR 40.0%
!! TTGCTTTGCTGTTATACACC+AGG + chr2_1:31880198-31880217 Msa0205230:three_prime_UTR 40.0%
ACACCAGGTGTAATGTTATG+AGG + chr2_1:31880213-31880232 Msa0205230:three_prime_UTR 40.0%
AAAGGCTTCATTAAGGAAGC+TGG - chr2_1:31880375-31880394 None:intergenic 40.0%
GGAACTAACCTCAAAAAACG+GGG - chr2_1:31880419-31880438 None:intergenic 40.0%
TCGAATGTCATCGGTGGTTA+CGG - chr2_1:31875142-31875161 None:intergenic 45.0%
! CAGTTTTCGAATGTCATCGG+TGG - chr2_1:31875148-31875167 None:intergenic 45.0%
CTCGAAACCATTCGTACCAA+AGG + chr2_1:31875195-31875214 Msa0205230:CDS 45.0%
TTAAGGGTTTAGGCCCTCTA+TGG - chr2_1:31875985-31876004 None:intergenic 45.0%
!! TGCAGTATAATGGGTGTGTG+TGG + chr2_1:31876059-31876078 Msa0205230:intron 45.0%
TGAGTCGAAACATCAGAAGC+TGG - chr2_1:31876181-31876200 None:intergenic 45.0%
! TGATCGTGGCCTTAATGTCA+AGG - chr2_1:31876538-31876557 None:intergenic 45.0%
TAAGGCCACGATCACAGTTA+TGG + chr2_1:31876544-31876563 Msa0205230:intron 45.0%
TTGGGAATAGTTTGAGGGTG+AGG + chr2_1:31876664-31876683 Msa0205230:intron 45.0%
TGGGAATAGTTTGAGGGTGA+GGG + chr2_1:31876665-31876684 Msa0205230:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr2_1:31876879-31876898 Msa0205230:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr2_1:31876880-31876899 Msa0205230:intron 45.0%
ACACTCACCGCAAATTCGTT+TGG - chr2_1:31876949-31876968 None:intergenic 45.0%
AAACGAATTTGCGGTGAGTG+TGG + chr2_1:31876948-31876967 Msa0205230:intron 45.0%
TCAGACTGAAGATCTGAAGG+TGG - chr2_1:31876984-31877003 None:intergenic 45.0%
!! CTTTTGATTCACTCGAGTCG+CGG - chr2_1:31877225-31877244 None:intergenic 45.0%
! ACATGTGAGGGCACATGTTA+AGG - chr2_1:31877830-31877849 None:intergenic 45.0%
GGTATGGATTTAACCTGCAC+AGG - chr2_1:31877953-31877972 None:intergenic 45.0%
TGCTTACCAGTTCCACTGAA+GGG - chr2_1:31877974-31877993 None:intergenic 45.0%
TCACAAAAATGCACAGGGAG+AGG - chr2_1:31878028-31878047 None:intergenic 45.0%
ATGAGTGGGGAAGCAGAAAT+TGG + chr2_1:31878130-31878149 Msa0205230:CDS 45.0%
GTGCTTCTTTCCAAGATGCT+TGG - chr2_1:31878233-31878252 None:intergenic 45.0%
!!! GCTCCTTTTTTGCGCTTCAA+TGG - chr2_1:31879074-31879093 None:intergenic 45.0%
GACTCCCCAAAATCATGTTC+TGG - chr2_1:31879244-31879263 None:intergenic 45.0%
TCTTCGTGGAGAGAACTTGT+TGG + chr2_1:31879289-31879308 Msa0205230:CDS 45.0%
! TATGTAGGTTGAGCTTCAGC+AGG - chr2_1:31879619-31879638 None:intergenic 45.0%
!!! ACACCTGTGCCGGTTATTTT+TGG - chr2_1:31879688-31879707 None:intergenic 45.0%
GGTTCTTTAGCCGTTTGTTC+TGG - chr2_1:31879802-31879821 None:intergenic 45.0%
TCCAGTGAGTGCAAGCATAA+TGG + chr2_1:31879841-31879860 Msa0205230:CDS 45.0%
ACCATTATGCTTGCACTCAC+TGG - chr2_1:31879845-31879864 None:intergenic 45.0%
GTCACTGATGGCTTCAACTT+AGG + chr2_1:31879892-31879911 Msa0205230:CDS 45.0%
CACTGATGGCTTCAACTTAG+GGG + chr2_1:31879894-31879913 Msa0205230:CDS 45.0%
ACATTTGCAGATCGTTCCCT+TGG - chr2_1:31880000-31880019 None:intergenic 45.0%
AAAGCTAAAGCCGCTGTTAG+TGG + chr2_1:31880078-31880097 Msa0205230:CDS 45.0%
ACAATCCTGCTTCTGCTGTA+TGG - chr2_1:31880150-31880169 None:intergenic 45.0%
CCACCTCATAACATTACACC+TGG - chr2_1:31880219-31880238 None:intergenic 45.0%
CCAGGTGTAATGTTATGAGG+TGG + chr2_1:31880216-31880235 Msa0205230:three_prime_UTR 45.0%
TTGTAGTACATGTCCGTTCC+AGG + chr2_1:31880334-31880353 Msa0205230:three_prime_UTR 45.0%
TGTAGTACATGTCCGTTCCA+GGG + chr2_1:31880335-31880354 Msa0205230:three_prime_UTR 45.0%
TACCAAAACTTGCCCTGGAA+CGG - chr2_1:31880350-31880369 None:intergenic 45.0%
TGGATTACCAAAACTTGCCC+TGG - chr2_1:31880355-31880374 None:intergenic 45.0%
CAAACACCTTGCAAGCATGG+AGG + chr2_1:31875062-31875081 Msa0205230:exon 50.0%
CTTCTTCCTCCATGCTTGCA+AGG - chr2_1:31875071-31875090 None:intergenic 50.0%
GCAGTGAGAATATTCGTCGG+AGG + chr2_1:31875105-31875124 Msa0205230:CDS 50.0%
ACTGCGACCTTTGGTACGAA+TGG - chr2_1:31875205-31875224 None:intergenic 50.0%
AATGGGTGTGTGTGGAAAGG+TGG + chr2_1:31876067-31876086 Msa0205230:CDS 50.0%
GTCGAAACATCAGAAGCTGG+TGG - chr2_1:31876178-31876197 None:intergenic 50.0%
GGATAGTAGTTGTGATCGGG+TGG + chr2_1:31876565-31876584 Msa0205230:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr2_1:31876881-31876900 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr2_1:31876878-31876897 Msa0205230:intron 50.0%
CAACCCCACTTAGTGGGATA+AGG - chr2_1:31876886-31876905 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+TGG + chr2_1:31876884-31876903 Msa0205230:intron 50.0%
TGTAGCCAACCCCACTTAGT+GGG - chr2_1:31876892-31876911 None:intergenic 50.0%
ATGTAGCCAACCCCACTTAG+TGG - chr2_1:31876893-31876912 None:intergenic 50.0%
!! ACTAAGTGGGGTTGGCTACA+TGG + chr2_1:31876892-31876911 Msa0205230:intron 50.0%
GCGTCAGACTGAAGATCTGA+AGG - chr2_1:31876987-31877006 None:intergenic 50.0%
! TGGTGGTCCTCCAAGAGTTT+TGG + chr2_1:31877155-31877174 Msa0205230:intron 50.0%
! GGCGTAGAGTCACTTTACTG+TGG - chr2_1:31877254-31877273 None:intergenic 50.0%
TCCATACCCTTCAGTGGAAC+TGG + chr2_1:31877965-31877984 Msa0205230:CDS 50.0%
ACCAGTTCCACTGAAGGGTA+TGG - chr2_1:31877969-31877988 None:intergenic 50.0%
GTGCTTACCAGTTCCACTGA+AGG - chr2_1:31877975-31877994 None:intergenic 50.0%
AGTGGGGAAGCAGAAATTGG+TGG + chr2_1:31878133-31878152 Msa0205230:CDS 50.0%
CAGGGACCCAAGAACTTGAA+AGG + chr2_1:31878383-31878402 Msa0205230:CDS 50.0%
GAGCAAGAGCGATTCTAGCA+AGG + chr2_1:31879090-31879109 Msa0205230:CDS 50.0%
AGATCCCAGCCCATCTAGAA+GGG - chr2_1:31879203-31879222 None:intergenic 50.0%
GGGAGTCTGCCAAAGTTTCA+TGG + chr2_1:31879257-31879276 Msa0205230:CDS 50.0%
CATGGTCTCAGAAGTCTTCG+TGG + chr2_1:31879275-31879294 Msa0205230:CDS 50.0%
TATCGGAAGGTTCGCTCTCT+GGG - chr2_1:31879453-31879472 None:intergenic 50.0%
! TTGGTAGGTTGAGATTCGGC+AGG - chr2_1:31879493-31879512 None:intergenic 50.0%
TTGGTAGGCAGAGATTCAGC+AGG - chr2_1:31879577-31879596 None:intergenic 50.0%
GCACCAAAAATAACCGGCAC+AGG + chr2_1:31879682-31879701 Msa0205230:CDS 50.0%
TAACCGGCACAGGTGTTTCA+TGG + chr2_1:31879692-31879711 Msa0205230:CDS 50.0%
! GAACCCATTTTGTACCCTGC+CGG + chr2_1:31879817-31879836 Msa0205230:CDS 50.0%
GAACCGGCAGGGTACAAAAT+GGG - chr2_1:31879823-31879842 None:intergenic 50.0%
ATGCTTGCACTCACTGGAAC+CGG - chr2_1:31879839-31879858 None:intergenic 50.0%
CCAGCATGCTCACTATTCTC+TGG - chr2_1:31879928-31879947 None:intergenic 50.0%
CCAGAGAATAGTGAGCATGC+TGG + chr2_1:31879925-31879944 Msa0205230:CDS 50.0%
GTAAGCGAGACTGCGACCTT+TGG - chr2_1:31875214-31875233 None:intergenic 55.0%
AGTTTGAGGGTGAGGGAGTG+TGG + chr2_1:31876672-31876691 Msa0205230:intron 55.0%
GTTACGGGGATAGCTCAGTC+GGG - chr2_1:31877013-31877032 None:intergenic 55.0%
CGTTACGGGGATAGCTCAGT+CGG - chr2_1:31877014-31877033 None:intergenic 55.0%
GTTGCGTCTAGTACCCCTGT+AGG + chr2_1:31879160-31879179 Msa0205230:CDS 55.0%
! CAGACCCTTCTAGATGGGCT+GGG + chr2_1:31879196-31879215 Msa0205230:CDS 55.0%
CAGATCCCAGCCCATCTAGA+AGG - chr2_1:31879204-31879223 None:intergenic 55.0%
!! CTTCTAGATGGGCTGGGATC+TGG + chr2_1:31879202-31879221 Msa0205230:CDS 55.0%
GTATCGGAAGGTTCGCTCTC+TGG - chr2_1:31879454-31879473 None:intergenic 55.0%
CCACCATGAAACACCTGTGC+CGG - chr2_1:31879698-31879717 None:intergenic 55.0%
GGAACCGGCAGGGTACAAAA+TGG - chr2_1:31879824-31879843 None:intergenic 55.0%
! GTCCGTTCCAGGGCAAGTTT+TGG + chr2_1:31880345-31880364 Msa0205230:three_prime_UTR 55.0%
GCAGACCCTTCTAGATGGGC+TGG + chr2_1:31879195-31879214 Msa0205230:CDS 60.0%
CCGGCACAGGTGTTTCATGG+TGG + chr2_1:31879695-31879714 Msa0205230:CDS 60.0%
TGCACTCACTGGAACCGGCA+GGG - chr2_1:31879834-31879853 None:intergenic 60.0%
TTGCACTCACTGGAACCGGC+AGG - chr2_1:31879835-31879854 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 31875054 31880486 31875054 ID=Msa0205230;Name=Msa0205230
chr2_1 mRNA 31875054 31880486 31875054 ID=Msa0205230-mRNA-1;Parent=Msa0205230;Name=Msa0205230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=24|1|1|1|1|1|4|352|665
chr2_1 exon 31875054 31875281 31875054 ID=Msa0205230-mRNA-1:exon:11146;Parent=Msa0205230-mRNA-1
chr2_1 exon 31876064 31876294 31876064 ID=Msa0205230-mRNA-1:exon:11147;Parent=Msa0205230-mRNA-1
chr2_1 exon 31877959 31878420 31877959 ID=Msa0205230-mRNA-1:exon:11148;Parent=Msa0205230-mRNA-1
chr2_1 exon 31879034 31880486 31879034 ID=Msa0205230-mRNA-1:exon:11149;Parent=Msa0205230-mRNA-1
chr2_1 five_prime_UTR 31875054 31875077 31875054 ID=Msa0205230-mRNA-1:five_prime_utr;Parent=Msa0205230-mRNA-1
chr2_1 CDS 31875078 31875281 31875078 ID=Msa0205230-mRNA-1:cds;Parent=Msa0205230-mRNA-1
chr2_1 CDS 31876064 31876294 31876064 ID=Msa0205230-mRNA-1:cds;Parent=Msa0205230-mRNA-1
chr2_1 CDS 31877959 31878420 31877959 ID=Msa0205230-mRNA-1:cds;Parent=Msa0205230-mRNA-1
chr2_1 CDS 31879034 31880134 31879034 ID=Msa0205230-mRNA-1:cds;Parent=Msa0205230-mRNA-1
chr2_1 three_prime_UTR 31880135 31880486 31880135 ID=Msa0205230-mRNA-1:three_prime_utr;Parent=Msa0205230-mRNA-1
Gene Sequence

>Msa0205230

ATGGAGGAAGAAGAAAGCGAGAAGAGAGCAGTGAGAATATTCGTCGGAGGATTAGGCGAAGCCGTAACCACCGATGACATTCGAAAACTGTTCGAATCATTGGGTAGCGTTCAATCACTCGAAACCATTCGTACCAAAGGTCGCAGTCTCGCTTACCTTGATTTCCTTGCTGATTCTAAATCCCTTTCCAAACTTTTCAGTAAGTATAATGGGTGTGTGTGGAAAGGTGGAAAGCTGAAACTTGAAAAGGCCAAAGAGCATTACCTTGATCGTTTGAAAAAAGAATGGGAAGAAGATGCAATTCTTAGTATTGAACCACCAGCTTCTGATGTTTCGACTCATAAGGAGGATTTGGTAAAGGAAAAGCCTAATGCAAGACGCTTTGTAGATCCAGATGCAAAGCCTCTCAATATTTACTTCCCAAGATTAAGAACGGTTAAATCCATACCCTTCAGTGGAACTGGTAAGCACAAATACAGTTTCCAGAATATTAAAGTTGGTCCTCTCCCTGTGCATTTTTGTGATTGTGAGGAACATTGCAGTCCTTTTATCGCAAAAAAGGATAAGTTATCTATGAATGGGGAAACTGAAAGGGAAAAGTTATCTATGAGTGGGGAAGCAGAAATTGGTGGAATAAATGATGAAGAAATTAACATAATGAATGCTGTGATGAACAAGCTTCTTGAAAAAGAAAAGGTTTCTAACACCAAGCATCTTGGAAAGAAGCACGATTGTTTTGAATCTCTCAGTGTTATTCATTCTAATGAATGTGAAGTAGATAGTGCAACAGATGATGGTGATGATGATGATGATGATCTCATAACCAACATTGCAACAAAGAAAAACAAAGCAGCTTTGACAGGGACCCAAGAACTTGAAAGGATCATGGAAAGTCAGGAATGGTCCAATAAAACAAATATTGCGGAGGAGGAACCCATTGAAGCGCAAAAAAGGAGCAAGAGCGATTCTAGCAAGGTTAAGAAGAGAAAATCACTTCCCAAATCGGAAAGTGAAAGCAATGGGGTTGCGTCTAGTACCCCTGTAGGCAAGAGTAAAATGCAGACCCTTCTAGATGGGCTGGGATCTGGTGCAAAGCCTACTGAACCAGAACATGATTTTGGGGAGTCTGCCAAAGTTTCATGGTCTCAGAAGTCTTCGTGGAGAGAACTTGTTGGTAAAGGAGGCAATGCTTCATTCAGTGCCTCTCTCATATTGCCGAAGTTTGATTCTGCTGAAGATCAGCAAAACTCTGATGGTTCTTACACTTCCTCTTCTACGAACGATGAAACTGAAGACATGGAAAGCGATGAATACCCAGAGAGCGAACCTTCCGATACAAAAGTGATAGAAGAGCCTGCCGAATCTCAACCTACCAATACACAAGTGATCAAAGAACATGCTGAAGCTCAACCTACCAATACAAGAGTGATAGAAGAGCCTGCTGAATCTCTGCCTACCAATGCACAAGTGATAGAAGAACCTGCTGAAGCTCAACCTACATATAAACAAGTGATAACTGAACCTGCTGAAACTCAGCATAACATAGCACCAAAAATAACCGGCACAGGTGTTTCATGGTGGCAAAAGAAATCTTGGACACAGTTGGCTAATGAGAATAACAGTCCATTTAGCCTTTCACAACTTTTGCCTGACATTAGTTTCCCAGAACAAACGGCTAAAGAACCCATTTTGTACCCTGCCGGTTCCAGTGAGTGCAAGCATAATGGTGCTGATAAGAATACTATTGATGGAACTGTCACTGATGGCTTCAACTTAGGGGAGATTGTACCAGAGAATAGTGAGCATGCTGGTACTGATATAGTTTCTGCTCCAGTAGTTGAGAAAATCGTTGAAACAGGTCCAAGGGAACGATCTGCAAATGTTGAAATAGGAGAAACTTGCTCATTTATGAGAAGTGCTGATTCTTTGAAAGAGTGGAAAAAAGCTAAAGCCGCTGTTAGTGGATCACTCAAAAGAAAACGTGGTGAGAAGAAGTAA

Protein sequence

>Msa0205230

MEEEESEKRAVRIFVGGLGEAVTTDDIRKLFESLGSVQSLETIRTKGRSLAYLDFLADSKSLSKLFSKYNGCVWKGGKLKLEKAKEHYLDRLKKEWEEDAILSIEPPASDVSTHKEDLVKEKPNARRFVDPDAKPLNIYFPRLRTVKSIPFSGTGKHKYSFQNIKVGPLPVHFCDCEEHCSPFIAKKDKLSMNGETEREKLSMSGEAEIGGINDEEINIMNAVMNKLLEKEKVSNTKHLGKKHDCFESLSVIHSNECEVDSATDDGDDDDDDLITNIATKKNKAALTGTQELERIMESQEWSNKTNIAEEEPIEAQKRSKSDSSKVKKRKSLPKSESESNGVASSTPVGKSKMQTLLDGLGSGAKPTEPEHDFGESAKVSWSQKSSWRELVGKGGNASFSASLILPKFDSAEDQQNSDGSYTSSSTNDETEDMESDEYPESEPSDTKVIEEPAESQPTNTQVIKEHAEAQPTNTRVIEEPAESLPTNAQVIEEPAEAQPTYKQVITEPAETQHNIAPKITGTGVSWWQKKSWTQLANENNSPFSLSQLLPDISFPEQTAKEPILYPAGSSECKHNGADKNTIDGTVTDGFNLGEIVPENSEHAGTDIVSAPVVEKIVETGPRERSANVEIGETCSFMRSADSLKEWKKAKAAVSGSLKRKRGEKK*