AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147970 MtrunA17_Chr7g0236831 97.895 190 4 0 1 190 609 798 5.03e-128 378
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147970 AT3G16840.1 46.995 183 97 0 1 183 636 818 6.39e-40 144
Msa1147970 AT3G16840.2 46.995 183 97 0 1 183 637 819 6.65e-40 144

Find 40 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACATCTTAATAAGTTTAT+AGG 0.255698 7_4:-27723104 Msa1147970:three_prime_UTR
GGGTGCAGGGTTCGGCAAAA+AGG 0.290667 7_4:-27724314 Msa1147970:CDS
GATCGCCAGGGTGCAGGGTT+CGG 0.383382 7_4:-27724322 Msa1147970:CDS
AACACGAGGACAAAGAAATA+TGG 0.399294 7_4:-27723632 Msa1147970:CDS
AAGGGAAGATTGGTTGTGAT+TGG 0.405942 7_4:-27724295 Msa1147970:CDS
GATAACTAGGAAGGATTCCC+AGG 0.461304 7_4:-27726095 Msa1147970:intron
AGCTAACACATTTGAATCAA+AGG 0.463553 7_4:-27723190 Msa1147970:three_prime_UTR
CTTCACGCACTTCGGAGTGC+TGG 0.471347 7_4:-27724253 Msa1147970:CDS
TTTCTTCAATTGCTTAGAGC+TGG 0.483272 7_4:+27725030 None:intergenic
TCCAAGTTCTAAAACTAGGC+AGG 0.486533 7_4:+27723323 None:intergenic
TAAGTGATCGCCAGGGTGCA+GGG 0.520603 7_4:-27724327 Msa1147970:CDS
GACAAACGTTTCAGAACCTC+CGG 0.525506 7_4:+27726139 None:intergenic
CAACTTTCAGCGATTTCCTG+TGG 0.540211 7_4:-27726176 None:intergenic
GATGTAAACTAACGAATCCT+CGG 0.545304 7_4:+27723259 None:intergenic
TGCAATTGTTCTTGCAAGAG+GGG 0.545868 7_4:+27724370 None:intergenic
TAATTCCAAGTTCTAAAACT+AGG 0.549792 7_4:+27723319 None:intergenic
AGGAACAAGTTAATAAATGT+AGG 0.554533 7_4:-27725063 Msa1147970:CDS
TTTCACATCGATATTTAGCA+GGG 0.558878 7_4:-27724836 Msa1147970:CDS
TATTTCCTCACAGGTGCGCA+TGG 0.562501 7_4:-27723668 Msa1147970:intron
AACAATTGCAACAATTAGCA+AGG 0.566807 7_4:-27724357 Msa1147970:CDS
TGGATGCACTTCACGCACTT+CGG 0.569304 7_4:-27724261 Msa1147970:CDS
TGTGATTGGTCAAGATTGTG+TGG 0.582982 7_4:-27724281 Msa1147970:CDS
AATAGACAAGATAACTAGGA+AGG 0.586181 7_4:-27726104 Msa1147970:CDS
GCAATTGAAGAAATTGCAGA+CGG 0.588149 7_4:-27725020 Msa1147970:intron
GGCATGTATGAGTTCTCCAC+AGG 0.589692 7_4:+27726160 None:intergenic
ACTTCGGAGTGCTGGTGAAG+AGG 0.590780 7_4:-27724245 Msa1147970:intron
TTGCAATTGTTCTTGCAAGA+GGG 0.591386 7_4:+27724369 None:intergenic
ACAGGTGCGCATGGATAGCA+AGG 0.592371 7_4:-27723659 Msa1147970:intron
GTCAAATAGACAAGATAACT+AGG 0.597956 7_4:-27726108 Msa1147970:CDS
GTTGCAATTGTTCTTGCAAG+AGG 0.600165 7_4:+27724368 None:intergenic
TGATCGGAATGCTAGTTCAG+TGG 0.601081 7_4:-27725116 Msa1147970:CDS
ACGAATCCTCGGCTCAATGT+GGG 0.604753 7_4:+27723270 None:intergenic
AACGAATCCTCGGCTCAATG+TGG 0.604819 7_4:+27723269 None:intergenic
TGTGGAGAACTCATACATGC+CGG 0.619112 7_4:-27726158 Msa1147970:exon
TTCACATCGATATTTAGCAG+GGG 0.675715 7_4:-27724835 Msa1147970:intron
ACAGAACCCACATTGAGCCG+AGG 0.689517 7_4:-27723276 Msa1147970:three_prime_UTR
TACTGAAAATTATGACAGCG+AGG 0.698982 7_4:-27725086 Msa1147970:CDS
GGAGAACTCATACATGCCGG+AGG 0.711010 7_4:-27726155 Msa1147970:exon
GATAGCAAGGATTCAACACG+AGG 0.720911 7_4:-27723646 Msa1147970:CDS
TGAAAATTATGACAGCGAGG+AGG 0.733805 7_4:-27725083 Msa1147970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTTTTTCTTTGTAAATTA+TGG - chr7_4:27723677-27723696 Msa1147970:intron 15.0%
!!! AGTTTTGTAAAATTGTTATA+TGG - chr7_4:27723770-27723789 Msa1147970:intron 15.0%
!!! GTTTTGTAAAATTGTTATAT+GGG - chr7_4:27723771-27723790 Msa1147970:intron 15.0%
!!! TAGAAAATATTTCTACTTTT+GGG + chr7_4:27723835-27723854 None:intergenic 15.0%
!!! TTAGAAAATATTTCTACTTT+TGG + chr7_4:27723836-27723855 None:intergenic 15.0%
!!! TATTCAATTTTCCTTATTTT+AGG - chr7_4:27724080-27724099 Msa1147970:intron 15.0%
!! TAAAAAAAAAAATGAGACAA+TGG + chr7_4:27724318-27724337 None:intergenic 15.0%
!! TATATATACATAGCTAAAAA+TGG + chr7_4:27724645-27724664 None:intergenic 15.0%
!! ATAAAATGCTATGAAATAAT+AGG + chr7_4:27725243-27725262 None:intergenic 15.0%
!!! ATTTTAATCAAGTATAAACA+TGG + chr7_4:27725430-27725449 None:intergenic 15.0%
!!! TTGTCACAATTATTTTTTAA+TGG - chr7_4:27725877-27725896 Msa1147970:intron 15.0%
!! ATACATCTTAATAAGTTTAT+AGG - chr7_4:27726137-27726156 Msa1147970:CDS 15.0%
!! AATAAATTCCAAAAACGTAA+CGG + chr7_4:27723196-27723215 None:intergenic 20.0%
!! TTTATTAGTAGCCAATAATT+AGG - chr7_4:27723745-27723764 Msa1147970:intron 20.0%
!! TGAATGAGTAAATATAACAA+TGG + chr7_4:27723977-27723996 None:intergenic 20.0%
!! CATAATAATGAAAATAGACA+AGG + chr7_4:27724024-27724043 None:intergenic 20.0%
!! TTCTTAAGATGAAAATTACA+TGG - chr7_4:27724763-27724782 Msa1147970:intron 20.0%
!!! TTTTATAAGAAATATGCTCT+TGG - chr7_4:27725257-27725276 Msa1147970:intron 20.0%
!!! ATCATACTCTTTTAATAATG+TGG - chr7_4:27725371-27725390 Msa1147970:intron 20.0%
!! AGAAATTTCAAATATTTCCT+TGG + chr7_4:27725479-27725498 None:intergenic 20.0%
!! AAATAAACAAACAAATAGCA+AGG + chr7_4:27725703-27725722 None:intergenic 20.0%
! AAAAAGTAATGACATACAAC+AGG + chr7_4:27723276-27723295 None:intergenic 25.0%
!!! GTTGTATGTCATTACTTTTT+AGG - chr7_4:27723276-27723295 Msa1147970:three_prime_UTR 25.0%
!! ATTATTGGCTACTAATAAAG+AGG + chr7_4:27723744-27723763 None:intergenic 25.0%
! TACAAAACTGTCCTAATTAT+TGG + chr7_4:27723759-27723778 None:intergenic 25.0%
!! CAAATATAGCAACTTTTTGT+TGG + chr7_4:27723914-27723933 None:intergenic 25.0%
! AATAGACAAGGATAAGAATT+AGG + chr7_4:27724012-27724031 None:intergenic 25.0%
!!! ATTTTCCTTATTTTAGGAGA+AGG - chr7_4:27724086-27724105 Msa1147970:intron 25.0%
! AGGAACAAGTTAATAAATGT+AGG - chr7_4:27724178-27724197 Msa1147970:intron 25.0%
!!! GAAAATGTTTTTGATTGCAA+AGG + chr7_4:27724389-27724408 None:intergenic 25.0%
! AGTGAAAGAAAACCATAATA+AGG + chr7_4:27724442-27724461 None:intergenic 25.0%
!! TACATAGCTAAAAATGGATT+AGG + chr7_4:27724639-27724658 None:intergenic 25.0%
! TTAGCTATGTATATATAGCA+TGG - chr7_4:27724648-27724667 Msa1147970:intron 25.0%
! ATCATCATCTAGACATTTAT+CGG + chr7_4:27724732-27724751 None:intergenic 25.0%
!!! TTATTTTTTGTGCTGTTTCA+TGG - chr7_4:27725062-27725081 Msa1147970:CDS 25.0%
!!! TAATTTCTGGTATGTTTTTC+AGG - chr7_4:27725752-27725771 Msa1147970:intron 25.0%
!!! TAATTCCAAGTTCTAAAACT+AGG + chr7_4:27725925-27725944 None:intergenic 25.0%
!!! ATCCAATTGTCATTTTTGTT+AGG - chr7_4:27726011-27726030 Msa1147970:intron 25.0%
! TACCTAACAAAAATGACAAT+TGG + chr7_4:27726016-27726035 None:intergenic 25.0%
GTCAAATAGACAAGATAACT+AGG - chr7_4:27723133-27723152 Msa1147970:three_prime_UTR 30.0%
AATAGACAAGATAACTAGGA+AGG - chr7_4:27723137-27723156 Msa1147970:three_prime_UTR 30.0%
! AATTCATACCGTTACGTTTT+TGG - chr7_4:27723185-27723204 Msa1147970:three_prime_UTR 30.0%
TCACTATACATGGTTTGAAA+TGG - chr7_4:27723247-27723266 Msa1147970:three_prime_UTR 30.0%
!!! TAGTTTTTAGCACATATCCA+TGG - chr7_4:27723375-27723394 Msa1147970:three_prime_UTR 30.0%
TAATTAAGAAACTGCAACCA+TGG + chr7_4:27723395-27723414 None:intergenic 30.0%
TGCTAAAGTGATACTTAGTA+TGG + chr7_4:27723429-27723448 None:intergenic 30.0%
AAAGTCATGTTCACAGTATT+GGG + chr7_4:27723513-27723532 None:intergenic 30.0%
TAAATGTCAAATATGCATCG+TGG + chr7_4:27723550-27723569 None:intergenic 30.0%
!! GTGTTATTTGAACAACCATT+TGG + chr7_4:27723720-27723739 None:intergenic 30.0%
!! ATTCATTAACTTGTGCCTTA+AGG - chr7_4:27723934-27723953 Msa1147970:intron 30.0%
!! TTCATTAACTTGTGCCTTAA+GGG - chr7_4:27723935-27723954 Msa1147970:intron 30.0%
TCCTGCGATATGTAAAATTT+GGG + chr7_4:27724344-27724363 None:intergenic 30.0%
! TTTTCACATCGATATTTAGC+AGG - chr7_4:27724404-27724423 Msa1147970:intron 30.0%
TTTCACATCGATATTTAGCA+GGG - chr7_4:27724405-27724424 Msa1147970:intron 30.0%
GGTATGTACTATCCTTATTA+TGG - chr7_4:27724427-27724446 Msa1147970:intron 30.0%
! ATTATGGTTTTCTTTCACTC+TGG - chr7_4:27724443-27724462 Msa1147970:intron 30.0%
AGTTATTGCATAGTGATTGT+AGG - chr7_4:27724516-27724535 Msa1147970:intron 30.0%
GTTATTGCATAGTGATTGTA+GGG - chr7_4:27724517-27724536 Msa1147970:intron 30.0%
! TTTTTCCTCTCAACTTTTGA+AGG - chr7_4:27724809-27724828 Msa1147970:intron 30.0%
CTCTGATTTATACTATTTGC+AGG - chr7_4:27724837-27724856 Msa1147970:CDS 30.0%
AACAATTGCAACAATTAGCA+AGG - chr7_4:27724884-27724903 Msa1147970:intron 30.0%
GTTCTGTTAAATTCTACTGT+TGG - chr7_4:27725153-27725172 Msa1147970:intron 30.0%
GAGAAATATAAAACGAGAGA+AGG + chr7_4:27725204-27725223 None:intergenic 30.0%
GAAATAATAGGTGACAAAGA+AGG + chr7_4:27725231-27725250 None:intergenic 30.0%
TCTACATATTTAGTGTCACA+TGG - chr7_4:27725311-27725330 Msa1147970:intron 30.0%
CATTACTTGAAAATGTACCA+AGG - chr7_4:27725459-27725478 Msa1147970:intron 30.0%
TGCAAAGAGAAAAAGAAAAG+AGG - chr7_4:27725636-27725655 Msa1147970:intron 30.0%
TAAAAATCTATTCATCGTCC+TGG + chr7_4:27725817-27725836 None:intergenic 30.0%
AGCTAACACATTTGAATCAA+AGG - chr7_4:27726051-27726070 Msa1147970:intron 30.0%
AAACGTAACGGTATGAATTC+AGG + chr7_4:27723184-27723203 None:intergenic 35.0%
CAGTTTCTTAATTACCTCCT+CGG - chr7_4:27723401-27723420 Msa1147970:three_prime_UTR 35.0%
AAGTCATGTTCACAGTATTG+GGG + chr7_4:27723512-27723531 None:intergenic 35.0%
GAAAGTCATGTTCACAGTAT+TGG + chr7_4:27723514-27723533 None:intergenic 35.0%
GAGAGAAAGTTGTCACAAAA+TGG + chr7_4:27723598-27723617 None:intergenic 35.0%
AACCATTTGGTTGACAACTT+GGG + chr7_4:27723707-27723726 None:intergenic 35.0%
TTCCTTAACATGTTCCCTAA+GGG + chr7_4:27723812-27723831 None:intergenic 35.0%
TTCTGCCTTCTCCTAAAATA+AGG + chr7_4:27724094-27724113 None:intergenic 35.0%
!! CAGAAAAAAGCTGGTTTGAT+CGG - chr7_4:27724109-27724128 Msa1147970:intron 35.0%
TACTGAAAATTATGACAGCG+AGG - chr7_4:27724155-27724174 Msa1147970:intron 35.0%
TTTCTTCAATTGCTTAGAGC+TGG + chr7_4:27724214-27724233 None:intergenic 35.0%
GCAATTGAAGAAATTGCAGA+CGG - chr7_4:27724221-27724240 Msa1147970:intron 35.0%
GAAGAGAAGTAGAAAACAGT+GGG + chr7_4:27724296-27724315 None:intergenic 35.0%
! TCCCAAATTTTACATATCGC+AGG - chr7_4:27724340-27724359 Msa1147970:CDS 35.0%
CTCCTGCGATATGTAAAATT+TGG + chr7_4:27724345-27724364 None:intergenic 35.0%
TTCACATCGATATTTAGCAG+GGG - chr7_4:27724406-27724425 Msa1147970:intron 35.0%
!! GCTGTTTTCACCATTTATGT+TGG - chr7_4:27724471-27724490 Msa1147970:intron 35.0%
GGTCAACAAACCAACATAAA+TGG + chr7_4:27724484-27724503 None:intergenic 35.0%
GCAATAACTACTACTCTTGT+TGG + chr7_4:27724505-27724524 None:intergenic 35.0%
TTTGTCCTTCAAAAGTTGAG+AGG + chr7_4:27724817-27724836 None:intergenic 35.0%
GATTTATACTATTTGCAGGC+TGG - chr7_4:27724841-27724860 Msa1147970:CDS 35.0%
TTGCAATTGTTCTTGCAAGA+GGG + chr7_4:27724875-27724894 None:intergenic 35.0%
CAAAAAATAAGTGATCGCCA+GGG - chr7_4:27724907-27724926 Msa1147970:intron 35.0%
AATAGGTGACAAAGAAGGAA+GGG + chr7_4:27725226-27725245 None:intergenic 35.0%
TAATAGGTGACAAAGAAGGA+AGG + chr7_4:27725227-27725246 None:intergenic 35.0%
AACACGAGGACAAAGAAATA+TGG - chr7_4:27725609-27725628 Msa1147970:intron 35.0%
GAAGAAGAAAAATCAAGACC+AGG - chr7_4:27725796-27725815 Msa1147970:intron 35.0%
GATGTAAACTAACGAATCCT+CGG + chr7_4:27725985-27726004 None:intergenic 35.0%
TCAGGTGAATCTGTTTACCT+GGG + chr7_4:27723166-27723185 None:intergenic 40.0%
TTCAGGTGAATCTGTTTACC+TGG + chr7_4:27723167-27723186 None:intergenic 40.0%
TTGGGGATTGTCACTATACA+TGG - chr7_4:27723237-27723256 Msa1147970:three_prime_UTR 40.0%
GATGACGAAGTATACTAGAG+AGG + chr7_4:27723355-27723374 None:intergenic 40.0%
TGATACTTAGTATGGAACCG+AGG + chr7_4:27723421-27723440 None:intergenic 40.0%
! CACAGTATTGGGGGTAAAAT+TGG + chr7_4:27723502-27723521 None:intergenic 40.0%
! AGTCATGTTCACAGTATTGG+GGG + chr7_4:27723511-27723530 None:intergenic 40.0%
CAACCATTTGGTTGACAACT+TGG + chr7_4:27723708-27723727 None:intergenic 40.0%
GTTCCTTAACATGTTCCCTA+AGG + chr7_4:27723813-27723832 None:intergenic 40.0%
! AAAGCTAACTTGTGCCCTTA+AGG + chr7_4:27723952-27723971 None:intergenic 40.0%
! GTGCACACTAGTTTAAGCAA+AGG + chr7_4:27724050-27724069 None:intergenic 40.0%
TGAAAATTATGACAGCGAGG+AGG - chr7_4:27724158-27724177 Msa1147970:intron 40.0%
GGAAGAGAAGTAGAAAACAG+TGG + chr7_4:27724297-27724316 None:intergenic 40.0%
TAGTGATTGTAGGGTAAAGC+AGG - chr7_4:27724526-27724545 Msa1147970:intron 40.0%
TGCAATTGTTCTTGCAAGAG+GGG + chr7_4:27724874-27724893 None:intergenic 40.0%
GTTGCAATTGTTCTTGCAAG+AGG + chr7_4:27724876-27724895 None:intergenic 40.0%
GCAAAAAATAAGTGATCGCC+AGG - chr7_4:27724906-27724925 Msa1147970:intron 40.0%
! AAGGGAAGATTGGTTGTGAT+TGG - chr7_4:27724946-27724965 Msa1147970:intron 40.0%
! TGTGATTGGTCAAGATTGTG+TGG - chr7_4:27724960-27724979 Msa1147970:intron 40.0%
!! TTTGTGCTGTTTCATGGATG+AGG - chr7_4:27725068-27725087 Msa1147970:CDS 40.0%
TCCCTAGTTGACGAGTAAAT+TGG - chr7_4:27725111-27725130 Msa1147970:CDS 40.0%
CCCAATTTACTCGTCAACTA+GGG + chr7_4:27725115-27725134 None:intergenic 40.0%
CCCTAGTTGACGAGTAAATT+GGG - chr7_4:27725112-27725131 Msa1147970:CDS 40.0%
CCTAGTTGACGAGTAAATTG+GGG - chr7_4:27725113-27725132 Msa1147970:CDS 40.0%
!! TGCTTCTGGTTGGTAATTTC+TGG - chr7_4:27725739-27725758 Msa1147970:intron 40.0%
!!! TCCTGCCTAGTTTTAGAACT+TGG - chr7_4:27725917-27725936 Msa1147970:intron 40.0%
!! TCCAAGTTCTAAAACTAGGC+AGG + chr7_4:27725921-27725940 None:intergenic 40.0%
TGTGGAGAACTCATACATGC+CGG - chr7_4:27723083-27723102 Msa1147970:three_prime_UTR 45.0%
GACAAACGTTTCAGAACCTC+CGG + chr7_4:27723105-27723124 None:intergenic 45.0%
GATAACTAGGAAGGATTCCC+AGG - chr7_4:27723146-27723165 Msa1147970:three_prime_UTR 45.0%
! TGCACAGATGAAAGTGTGCT+TGG - chr7_4:27723218-27723237 Msa1147970:three_prime_UTR 45.0%
! GCACAGATGAAAGTGTGCTT+GGG - chr7_4:27723219-27723238 Msa1147970:three_prime_UTR 45.0%
! CACAGATGAAAGTGTGCTTG+GGG - chr7_4:27723220-27723239 Msa1147970:three_prime_UTR 45.0%
! AGAGGCTGTTGTGACTTGTA+AGG + chr7_4:27723337-27723356 None:intergenic 45.0%
TACTTAGTATGGAACCGAGG+AGG + chr7_4:27723418-27723437 None:intergenic 45.0%
GTCCCAAGTTGTCAACCAAA+TGG - chr7_4:27723702-27723721 Msa1147970:intron 45.0%
! TCATGCTAACTTGTGCCCTT+AGG - chr7_4:27723794-27723813 Msa1147970:intron 45.0%
! CATGCTAACTTGTGCCCTTA+GGG - chr7_4:27723795-27723814 Msa1147970:intron 45.0%
TGCCCTTAGGGAACATGTTA+AGG - chr7_4:27723807-27723826 Msa1147970:intron 45.0%
AGGAGAAGGCAGAAAAAAGC+TGG - chr7_4:27724100-27724119 Msa1147970:intron 45.0%
TGATCGGAATGCTAGTTCAG+TGG - chr7_4:27724125-27724144 Msa1147970:intron 45.0%
GTTCGGCAAAAAGGGAAGAT+TGG - chr7_4:27724936-27724955 Msa1147970:intron 45.0%
CCCCAATTTACTCGTCAACT+AGG + chr7_4:27725116-27725135 None:intergenic 45.0%
CTGTGAGGAAATAGGGGTAA+GGG + chr7_4:27725566-27725585 None:intergenic 45.0%
GATAGCAAGGATTCAACACG+AGG - chr7_4:27725595-27725614 Msa1147970:intron 45.0%
AAGAGCAACACTTGTGCTTC+TGG - chr7_4:27725725-27725744 Msa1147970:intron 45.0%
!!! TTCTATAAAAAAATATTTTA+TGG - chr7_4:27726099-27726118 Msa1147970:CDS 5.0%
GGCATGTATGAGTTCTCCAC+AGG + chr7_4:27723084-27723103 None:intergenic 50.0%
TGGATGCACTTCACGCACTT+CGG - chr7_4:27724980-27724999 Msa1147970:intron 50.0%
CCTGTGAGGAAATAGGGGTA+AGG + chr7_4:27725567-27725586 None:intergenic 50.0%
CCTTACCCCTATTTCCTCAC+AGG - chr7_4:27725564-27725583 Msa1147970:intron 50.0%
TGCGCACCTGTGAGGAAATA+GGG + chr7_4:27725573-27725592 None:intergenic 50.0%
ATGCGCACCTGTGAGGAAAT+AGG + chr7_4:27725574-27725593 None:intergenic 50.0%
TATTTCCTCACAGGTGCGCA+TGG - chr7_4:27725573-27725592 Msa1147970:intron 50.0%
GCAACACTTGTGCTTCTGGT+TGG - chr7_4:27725729-27725748 Msa1147970:intron 50.0%
ACGAATCCTCGGCTCAATGT+GGG + chr7_4:27725974-27725993 None:intergenic 50.0%
AACGAATCCTCGGCTCAATG+TGG + chr7_4:27725975-27725994 None:intergenic 50.0%
GGAGAACTCATACATGCCGG+AGG - chr7_4:27723086-27723105 Msa1147970:three_prime_UTR 55.0%
ATAAGTGATCGCCAGGGTGC+AGG - chr7_4:27724913-27724932 Msa1147970:intron 55.0%
TAAGTGATCGCCAGGGTGCA+GGG - chr7_4:27724914-27724933 Msa1147970:intron 55.0%
GGTGCAGGGTTCGGCAAAAA+GGG - chr7_4:27724928-27724947 Msa1147970:intron 55.0%
!! ACTTCGGAGTGCTGGTGAAG+AGG - chr7_4:27724996-27725015 Msa1147970:intron 55.0%
GCGCACCTGTGAGGAAATAG+GGG + chr7_4:27725572-27725591 None:intergenic 55.0%
ACAGGTGCGCATGGATAGCA+AGG - chr7_4:27725582-27725601 Msa1147970:intron 55.0%
ACAGAACCCACATTGAGCCG+AGG - chr7_4:27725965-27725984 Msa1147970:intron 55.0%
! TTTTGCCGAACCCTGCACCC+TGG + chr7_4:27724927-27724946 None:intergenic 60.0%
GGGTGCAGGGTTCGGCAAAA+AGG - chr7_4:27724927-27724946 Msa1147970:intron 60.0%
CTTCACGCACTTCGGAGTGC+TGG - chr7_4:27724988-27725007 Msa1147970:intron 60.0%
GCTATCCATGCGCACCTGTG+AGG + chr7_4:27725581-27725600 None:intergenic 60.0%
GATCGCCAGGGTGCAGGGTT+CGG - chr7_4:27724919-27724938 Msa1147970:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 27723072 27726191 27723072 ID=Msa1147970;Name=Msa1147970
chr7_4 mRNA 27723072 27726191 27723072 ID=Msa1147970-mRNA-1;Parent=Msa1147970;Name=Msa1147970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=27|1|1|1|1|1|6|362|190
chr7_4 exon 27723072 27723489 27723072 ID=Msa1147970-mRNA-1:exon:6784;Parent=Msa1147970-mRNA-1
chr7_4 exon 27723596 27723677 27723596 ID=Msa1147970-mRNA-1:exon:6783;Parent=Msa1147970-mRNA-1
chr7_4 exon 27724246 27724404 27724246 ID=Msa1147970-mRNA-1:exon:6782;Parent=Msa1147970-mRNA-1
chr7_4 exon 27724836 27724901 27724836 ID=Msa1147970-mRNA-1:exon:6781;Parent=Msa1147970-mRNA-1
chr7_4 exon 27725021 27725161 27725021 ID=Msa1147970-mRNA-1:exon:6780;Parent=Msa1147970-mRNA-1
chr7_4 exon 27726096 27726191 27726096 ID=Msa1147970-mRNA-1:exon:6779;Parent=Msa1147970-mRNA-1
chr7_4 five_prime_UTR 27726165 27726191 27726165 ID=Msa1147970-mRNA-1:five_prime_utr;Parent=Msa1147970-mRNA-1
chr7_4 CDS 27726096 27726164 27726096 ID=Msa1147970-mRNA-1:cds;Parent=Msa1147970-mRNA-1
chr7_4 CDS 27725021 27725161 27725021 ID=Msa1147970-mRNA-1:cds;Parent=Msa1147970-mRNA-1
chr7_4 CDS 27724836 27724901 27724836 ID=Msa1147970-mRNA-1:cds;Parent=Msa1147970-mRNA-1
chr7_4 CDS 27724246 27724404 27724246 ID=Msa1147970-mRNA-1:cds;Parent=Msa1147970-mRNA-1
chr7_4 CDS 27723596 27723677 27723596 ID=Msa1147970-mRNA-1:cds;Parent=Msa1147970-mRNA-1
chr7_4 CDS 27723434 27723489 27723434 ID=Msa1147970-mRNA-1:cds;Parent=Msa1147970-mRNA-1
chr7_4 three_prime_UTR 27723072 27723433 27723072 ID=Msa1147970-mRNA-1:three_prime_utr;Parent=Msa1147970-mRNA-1
Gene Sequence

>Msa1147970

ATGCCGGAGGTTCTGAAACGTTTGTCTCTTGCACGTCAAATAGACAAGATAACTAGGAAGGATTCCCAGGAGAAGGCAGAAAAAAGCTGGTTTGATCGGAATGCTAGTTCAGTGGATTTAGTTACTGAAAATTATGACAGCGAGGAGGAACAAGTTAATAAATGTAGGCAAAAGAAAGCCAGCTCTAAGCAATTGAAGAAATTGCAGACGGAGCTCAGTATGCTGATTTCACGTCCTTTGCAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCTGGTGTAACACCCCTCTTGCAAGAACAATTGCAACAATTAGCAAGGCAAAAAATAAGTGATCGCCAGGGTGCAGGGTTCGGCAAAAAGGGAAGATTGGTTGTGATTGGTCAAGATTGTGTGGATGCACTTCACGCACTTCGGAGTGCTGGTGAAGAGGTGCGCATGGATAGCAAGGATTCAACACGAGGACAAAGAAATATGGTGAATGCAAAGAGAAAAAGAAAAGAGGAAAAGACACGTTTGCGTGATCAGCGTAAAAAGAAGAAGAAAAATCAAGACCAGGACGATGAATAG

Protein sequence

>Msa1147970

MPEVLKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNKCRQKKASSKQLKKLQTELSMLISRPLQSKTFSHRYLAGAGVTPLLQEQLQQLARQKISDRQGAGFGKKGRLVVIGQDCVDALHALRSAGEEVRMDSKDSTRGQRNMVNAKRKRKEEKTRLRDQRKKKKKNQDQDDE*