AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0293450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293450 MtrunA17_Chr7g0222441 92.391 92 7 0 28 119 279 370 3.56e-55 181
Msa0293450 MtrunA17_Chr8g0358431 86.957 92 12 0 28 119 56 147 7.51e-54 167
Msa0293450 MtrunA17_Chr8g0356771 87.778 90 11 0 30 119 72 161 1.09e-53 166
Msa0293450 MtrunA17_Chr8g0341321 89.130 92 10 0 28 119 266 357 1.77e-52 173
Msa0293450 MtrunA17_Chr7g0228611 60.909 110 35 1 18 119 191 300 1.54e-39 138
Msa0293450 MtrunA17_Chr6g0458971 60.909 110 35 1 18 119 194 303 6.45e-39 136
Msa0293450 MtrunA17_Chr7g0271531 59.633 109 43 1 11 119 282 389 7.40e-37 131
Msa0293450 MtrunA17_Chr8g0356701 86.667 30 4 0 90 119 1 30 1.19e-11 57.8
Msa0293450 MtrunA17_Chr5g0429661 93.103 29 2 0 1 29 132 160 2.34e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293450 AT1G24280.1 91.304 92 8 0 28 119 283 374 1.24e-54 180
Msa0293450 AT5G13110.1 91.304 92 8 0 28 119 280 371 2.02e-54 179
Msa0293450 AT5G35790.1 89.130 92 10 0 28 119 261 352 6.45e-52 172
Msa0293450 AT3G27300.1 61.818 110 34 1 18 119 192 301 2.81e-40 140
Msa0293450 AT3G27300.3 61.818 110 34 1 18 119 192 301 2.81e-40 140
Msa0293450 AT3G27300.2 61.818 110 34 1 18 119 192 301 2.81e-40 140
Msa0293450 AT5G40760.2 61.818 110 34 1 18 119 191 300 4.33e-40 140
Msa0293450 AT5G40760.1 61.818 110 34 1 18 119 191 300 4.33e-40 140
Msa0293450 AT3G27300.4 61.818 110 34 1 18 119 263 372 5.47e-40 140
Msa0293450 AT3G27300.5 61.818 110 34 1 18 119 246 355 5.85e-40 140
Msa0293450 AT1G09420.1 59.406 101 37 2 20 119 316 413 1.42e-33 123
Msa0293450 AT1G09420.2 58.824 102 38 2 20 120 316 414 1.46e-33 123

Find 167 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTTCTACTTATATTTA+AGG 0.080383 2_3:+44193623 None:intergenic
CTTAGATAATTTAATTTAAA+AGG 0.101501 2_3:-44192334 Msa0293450:three_prime_UTR
TAAACATTTGTGAGACTATT+TGG 0.121521 2_3:-44193191 Msa0293450:three_prime_UTR
CATGACTTTCAATTGCTTAA+TGG 0.152158 2_3:-44193402 Msa0293450:three_prime_UTR
CTCTATGATTTGCACCTTAC+TGG 0.176930 2_3:-44191847 Msa0293450:three_prime_UTR
TTCTCTGGTCTTAAGGAAAA+TGG 0.186374 2_3:-44193045 Msa0293450:three_prime_UTR
ACCTTATATTTAACCGAAAA+AGG 0.188732 2_3:+44193575 None:intergenic
TTGATATTCTCAGAAGATTT+TGG 0.217136 2_3:-44193937 Msa0293450:CDS
GATTCATGTTCAGTTGCTTC+TGG 0.221500 2_3:-44190022 Msa0293450:three_prime_UTR
CTGGACAACAAATGGACTTT+TGG 0.236482 2_3:-44192559 Msa0293450:three_prime_UTR
TGTAGGTACTTTGACAATTA+TGG 0.237604 2_3:-44193814 Msa0293450:intron
ATTTCCATTGCATATGCTTT+TGG 0.239502 2_3:+44190677 None:intergenic
AGCAATATGGTGAAAGAAAA+TGG 0.245087 2_3:-44194551 Msa0293450:CDS
TTAAAATGTTTCTTGTTATC+AGG 0.245894 2_3:+44190052 None:intergenic
TTGCTTCTGCTCCAAGCTTT+TGG 0.254437 2_3:-44189839 Msa0293450:three_prime_UTR
ATTTAAAACAGATGAATTAA+AGG 0.258375 2_3:+44193438 None:intergenic
ACTTTCTTCTCAAAATCATT+TGG 0.285948 2_3:-44193512 Msa0293450:three_prime_UTR
TTGGGAGAATTTATATTTCC+TGG 0.287407 2_3:-44193172 Msa0293450:three_prime_UTR
TTTCAAAAGGTTCAATTCAT+TGG 0.290203 2_3:+44190760 None:intergenic
CTTTCTTCTCAAAATCATTT+GGG 0.304478 2_3:-44193511 Msa0293450:three_prime_UTR
TCTCCGGTGTAGGTGGTTCC+TGG 0.315626 2_3:-44192578 Msa0293450:three_prime_UTR
TCTTCTACATCCAAACTAAC+AGG 0.324282 2_3:+44193727 None:intergenic
ACTTCTCCTCAACTGTTTGA+TGG 0.326642 2_3:+44189510 None:intergenic
TGAAGATTATAGACAGAATA+TGG 0.330736 2_3:-44188917 Msa0293450:three_prime_UTR
CATATAGTCCGAGACAGATA+TGG 0.332987 2_3:-44189403 Msa0293450:three_prime_UTR
TTGTCTTCTAGCACTGCGTT+CGG 0.333549 2_3:+44191988 None:intergenic
TCAAATTGCGGCGCAATTGC+CGG 0.345914 2_3:-44190945 Msa0293450:three_prime_UTR
ATTTCATTGTCTGTCCTTCC+CGG 0.348044 2_3:+44190926 None:intergenic
GTCATAACTTAGTTGTGTTA+TGG 0.351563 2_3:-44193285 Msa0293450:three_prime_UTR
CCTTTCCTCAAGGAATATAA+TGG 0.356155 2_3:+44189037 Msa0293440:CDS
TGAAGTCTCCTTCAGTTTCA+AGG 0.359899 2_3:-44190087 Msa0293450:three_prime_UTR
AGTAAACTTCTCTGGTCTTA+AGG 0.361323 2_3:-44193052 Msa0293450:three_prime_UTR
TTATTGTCTAGAGGCATGTT+TGG 0.361440 2_3:-44193243 Msa0293450:three_prime_UTR
AAACATTTGTGAGACTATTT+GGG 0.365615 2_3:-44193190 Msa0293450:three_prime_UTR
CAGACAATGAAATGAATCTA+TGG 0.377303 2_3:-44190916 Msa0293450:three_prime_UTR
AAGAAGAGACTGAGGCAAAA+AGG 0.381753 2_3:-44190881 Msa0293450:three_prime_UTR
TGGTAGTTCTTCACCCAAAC+GGG 0.381791 2_3:-44192971 Msa0293450:three_prime_UTR
TGAAGTGCAATAGCCCCGTT+TGG 0.382272 2_3:+44192957 None:intergenic
TTGTCTGAGGTTGAGAATAA+TGG 0.383111 2_3:-44190833 Msa0293450:three_prime_UTR
CAAATAGCTGAGAAGTTAGA+AGG 0.389483 2_3:-44194525 Msa0293450:CDS
TTCATGCAGTACTAGGAAAT+AGG 0.390350 2_3:-44191130 Msa0293450:intron
AAAGTTATTAACAAATATAA+TGG 0.394861 2_3:+44193310 None:intergenic
TATAGGATCGATCACTATCT+TGG 0.396364 2_3:-44194051 Msa0293450:intron
AATGGAAACCCCTGTTAGTT+TGG 0.405110 2_3:-44193737 Msa0293450:CDS
AAAAGCATATGCAATGGAAA+TGG 0.406668 2_3:-44190675 Msa0293450:three_prime_UTR
GTTGAACTTCATGCAGTACT+AGG 0.413389 2_3:-44191137 Msa0293450:three_prime_UTR
TGTCTTCTAGCACTGCGTTC+GGG 0.418052 2_3:+44191989 None:intergenic
ATTCATGTTCAGTTGCTTCT+GGG 0.418308 2_3:-44190021 Msa0293450:intron
CTGTGAGGTCGTTCAAATCC+AGG 0.419579 2_3:-44189869 Msa0293450:three_prime_UTR
TTGAACTCTCTGATTTCAAA+AGG 0.423755 2_3:+44190747 None:intergenic
TCTTAATCAGTAAACTTCTC+TGG 0.427930 2_3:-44193060 Msa0293450:three_prime_UTR
GTGGTAAGAGCTGCAGGCTT+AGG 0.429634 2_3:-44191226 Msa0293450:three_prime_UTR
TTCTTGTTATCAGGTTTCAA+TGG 0.432356 2_3:+44190061 None:intergenic
TCAATTGCTTAATGGATGTC+AGG 0.433187 2_3:-44193394 Msa0293450:three_prime_UTR
TGGAGCAGCTCAGTCAGACT+TGG 0.433717 2_3:-44192539 Msa0293450:three_prime_UTR
TTCAGAAATATGAGCAGAAA+AGG 0.434135 2_3:-44188860 None:intergenic
CTTTCTTCCCATATCTGTCT+CGG 0.437499 2_3:+44189395 None:intergenic
GGTGGTTCCTGGACAACAAA+TGG 0.443832 2_3:-44192567 Msa0293450:three_prime_UTR
AGAAATGAAAAGGTCTCATA+TGG 0.448571 2_3:-44193700 Msa0293450:CDS
ATTAATTTACCTGCTTGCTT+AGG 0.450338 2_3:+44191354 None:intergenic
CAAAAGTCCATTTGTTGTCC+AGG 0.451785 2_3:+44192560 None:intergenic
AGCTGAGAAGTTAGAAGGAA+GGG 0.452156 2_3:-44194520 Msa0293450:CDS
AAGTTTACTGATTAAGAAGC+AGG 0.452159 2_3:+44193066 None:intergenic
CAAATTGCGGCGCAATTGCC+GGG 0.453452 2_3:-44190944 Msa0293450:three_prime_UTR
GCCTCAGAGACTCATGGTTA+TGG 0.454048 2_3:-44193462 Msa0293450:three_prime_UTR
TTCTTTATAAGACCTTCATT+AGG 0.461353 2_3:+44192379 None:intergenic
TCTATTTGATGTCAAGAGAA+AGG 0.462460 2_3:-44192058 Msa0293450:three_prime_UTR
TTAGATAATTTAATTTAAAA+GGG 0.466966 2_3:-44192333 Msa0293450:intron
CTCATATTTCTGAAGGCTGC+AGG 0.467161 2_3:+44188869 Msa0293440:intron
GCATCTCAACCTGCCTTCTC+CGG 0.470321 2_3:-44192594 Msa0293450:three_prime_UTR
CGAGTTTGAAATGAAGTTGG+CGG 0.472685 2_3:-44191564 Msa0293450:three_prime_UTR
GCAATATGGTGAAAGAAAAT+GGG 0.474578 2_3:-44194550 Msa0293450:CDS
TTTCGAGTTTGAAATGAAGT+TGG 0.477365 2_3:-44191567 Msa0293450:three_prime_UTR
GACAATAAATGCTACAACAA+TGG 0.477746 2_3:+44193258 None:intergenic
ATGATTAAAGGAAACTGATA+AGG 0.479594 2_3:-44194581 None:intergenic
TGTTTGGATTGATTTATTTG+AGG 0.482049 2_3:-44193227 Msa0293450:three_prime_UTR
AATGAAGGTCTTATAAAGAA+TGG 0.484117 2_3:-44192376 Msa0293450:three_prime_UTR
AGGGGTTTCCATTGCAAAGA+GGG 0.484242 2_3:+44193747 None:intergenic
ATAAAACAAATTTGATCCAA+TGG 0.485860 2_3:+44193095 None:intergenic
TAATATACATCAGCATTGAA+TGG 0.490605 2_3:-44189151 Msa0293450:three_prime_UTR
ATAAGGTTGGTGAAGCAATA+TGG 0.490665 2_3:-44194564 Msa0293450:CDS
GACCTTAAATATAAGTAGAA+AGG 0.491384 2_3:-44193625 Msa0293450:three_prime_UTR
TTTCTACTTATATTTAAGGT+CGG 0.501285 2_3:+44193627 None:intergenic
ATGGTAGTTCTTCACCCAAA+CGG 0.503508 2_3:-44192972 Msa0293450:three_prime_UTR
AGAAGACATTAGAAATGAAA+AGG 0.504615 2_3:-44193710 Msa0293450:CDS
GTCAACATCAATCCTAATGA+AGG 0.506108 2_3:-44192391 Msa0293450:three_prime_UTR
CGTTCAGCTGACCAAAAGCT+TGG 0.507220 2_3:+44189828 None:intergenic
CAACGTATGGTCATGGATGT+TGG 0.507786 2_3:-44191386 Msa0293450:three_prime_UTR
TTATGCTCTAGATTTGAGTC+TGG 0.508618 2_3:-44189178 Msa0293450:three_prime_UTR
GAAGTGCAATAGCCCCGTTT+GGG 0.509640 2_3:+44192958 None:intergenic
GACAATGGTTTATGAGTCAC+AGG 0.514909 2_3:+44190851 None:intergenic
AGCAGAAGCAACAGTCGCCC+TGG 0.516389 2_3:+44189851 None:intergenic
TTATTCTCAACCTCAGACAA+TGG 0.517875 2_3:+44190836 None:intergenic
AAAGATGTGGTAAGAGCTGC+AGG 0.517924 2_3:-44191232 Msa0293450:three_prime_UTR
ATATAGTCCGAGACAGATAT+GGG 0.518624 2_3:-44189402 Msa0293450:three_prime_UTR
AATACTAGCCCTCTTTGCAA+TGG 0.520791 2_3:-44193755 Msa0293450:CDS
AATGGTTTCCTTGAAACTGA+AGG 0.520980 2_3:+44190079 None:intergenic
GTAAGAGCTGCAGGCTTAGG+TGG 0.521603 2_3:-44191223 Msa0293450:three_prime_UTR
TTGCGGCGCAATTGCCGGGA+AGG 0.523236 2_3:-44190940 Msa0293450:three_prime_UTR
CTACTTATATTTAAGGTCGG+AGG 0.525311 2_3:+44193630 None:intergenic
GGCCCCTCATGGTAAAAGCT+TGG 0.526227 2_3:+44189463 None:intergenic
TCTCTCAACAATGCAGGACT+TGG 0.528802 2_3:+44189106 Msa0293440:CDS
CTATCTTGGAAAAGAGCTTG+TGG 0.529498 2_3:-44194037 Msa0293450:CDS
CTATTTGATGTCAAGAGAAA+GGG 0.531783 2_3:-44192057 Msa0293450:three_prime_UTR
ATGCAGTAATTGATATTACA+AGG 0.532867 2_3:-44192995 Msa0293450:three_prime_UTR
TCATTGGATAATAATATCTC+CGG 0.533248 2_3:+44190776 None:intergenic
TTAAAGGAAACTGATAAGGT+TGG 0.535969 2_3:-44194577 None:intergenic
CCTGCCTTCTCCGGTGTAGG+TGG 0.537783 2_3:-44192585 Msa0293450:three_prime_UTR
GTTTGTATATTCTTAAGAGC+TGG 0.539478 2_3:-44189082 Msa0293450:three_prime_UTR
TAGCTGAGAAGTTAGAAGGA+AGG 0.540309 2_3:-44194521 Msa0293450:CDS
GACGCTCTATAAAGCCAGTA+AGG 0.542656 2_3:+44191833 None:intergenic
CCATTATATTCCTTGAGGAA+AGG 0.542881 2_3:-44189037 Msa0293450:three_prime_UTR
TGTTATCTCTGTAAAACCAT+TGG 0.549021 2_3:-44193111 Msa0293450:three_prime_UTR
TTGGTACTGAAGGACGTGGC+AGG 0.552068 2_3:-44193918 Msa0293450:intron
TACTTATATTTAAGGTCGGA+GGG 0.553317 2_3:+44193631 None:intergenic
GAGAAGTTAGAAGGAAGGGT+TGG 0.557009 2_3:-44194516 Msa0293450:CDS
GGAGCAGCTCAGTCAGACTT+GGG 0.558663 2_3:-44192538 Msa0293450:three_prime_UTR
CTGTGTGAAAATATGAACTT+AGG 0.558838 2_3:+44189436 None:intergenic
TAAGAGTCAAGAGAAAGCAC+CGG 0.560716 2_3:-44190795 Msa0293450:three_prime_UTR
TCTTCTCAAAATCATTTGGG+TGG 0.564462 2_3:-44193508 Msa0293450:three_prime_UTR
CAACCTGCCTTCTCCGGTGT+AGG 0.564590 2_3:-44192588 Msa0293450:three_prime_UTR
GGAACCACCTACACCGGAGA+AGG 0.565980 2_3:+44192581 None:intergenic
TATTGCAGATACATTGCACT+TGG 0.566057 2_3:+44189007 Msa0293440:intron
TTGTAGCATTTATTGTCTAG+AGG 0.566875 2_3:-44193252 Msa0293450:three_prime_UTR
TGAACGTGCACAAAGAAGAA+AGG 0.570373 2_3:-44189811 Msa0293450:three_prime_UTR
TTCTATTCAAAATCAAGCAA+TGG 0.570585 2_3:-44189701 Msa0293450:three_prime_UTR
CTTCTAGCACTGCGTTCGGG+TGG 0.572383 2_3:+44191992 None:intergenic
TCTCTGAGGCGTAGCTCAAG+TGG 0.574622 2_3:+44193475 None:intergenic
TTCACCAAAAGCATATGCAA+TGG 0.574736 2_3:-44190681 Msa0293450:three_prime_UTR
CTTCTACATCCAAACTAACA+GGG 0.575562 2_3:+44193728 None:intergenic
CAAACATCTCTCAACAATGC+AGG 0.576418 2_3:+44189100 Msa0293440:CDS
TGGCAATGAACCTTTCCTCA+AGG 0.576590 2_3:+44189027 Msa0293440:CDS
TATCAGATGGTCTCAAATTG+CGG 0.579070 2_3:-44190957 Msa0293450:intron
TTCAGAAACTTCAACTGACC+AGG 0.584990 2_3:+44193154 None:intergenic
TTATCAGGTTTGCAAAGATG+TGG 0.585835 2_3:-44191245 Msa0293450:intron
GAAAATATGAACTTAGGTGG+AGG 0.586726 2_3:+44189442 None:intergenic
TGTGAGGTCGTTCAAATCCA+GGG 0.589156 2_3:-44189868 Msa0293450:three_prime_UTR
AGTAATTGATATTACAAGGA+TGG 0.590314 2_3:-44192991 Msa0293450:three_prime_UTR
ATGTTCCATTATATTCCTTG+AGG 0.590467 2_3:-44189042 Msa0293450:three_prime_UTR
CCACCTACACCGGAGAAGGC+AGG 0.592960 2_3:+44192585 None:intergenic
TCGGTTAAATATAAGGTCGG+AGG 0.602403 2_3:-44193569 Msa0293450:three_prime_UTR
ACTTAGGTGGAGGCCCCTCA+TGG 0.602914 2_3:+44189452 None:intergenic
GATCGACGAATCGACTGAGT+AGG 0.604180 2_3:+44193360 None:intergenic
GCATATGCAATGGAAATGGA+AGG 0.607612 2_3:-44190671 Msa0293450:three_prime_UTR
AAGAAGCCATCAAACAGTTG+AGG 0.607756 2_3:-44189516 Msa0293450:three_prime_UTR
AAGAGGAACATTCTCACAAG+AGG 0.608650 2_3:-44191174 Msa0293450:three_prime_UTR
CAGGGGTTTCCATTGCAAAG+AGG 0.613005 2_3:+44193746 None:intergenic
GCTTAATGGATGTCAGGTCA+AGG 0.613085 2_3:-44193388 Msa0293450:three_prime_UTR
GATAGAACAACGTATGGTCA+TGG 0.614248 2_3:-44191393 Msa0293450:three_prime_UTR
GTTGCTGATAGAACAACGTA+TGG 0.625794 2_3:-44191399 Msa0293450:three_prime_UTR
AGCTACGCCTCAGAGACTCA+TGG 0.630710 2_3:-44193468 Msa0293450:three_prime_UTR
AGTTCAGTACCTAAGCAAGC+AGG 0.631698 2_3:-44191363 Msa0293450:intron
TGTGAAAATATGAACTTAGG+TGG 0.631869 2_3:+44189439 None:intergenic
TTCTACATCCAAACTAACAG+GGG 0.638226 2_3:+44193729 None:intergenic
TGTCCAGGAACCACCTACAC+CGG 0.647767 2_3:+44192575 None:intergenic
AGAAGCCAGAGTTTAAAACC+TGG 0.650669 2_3:-44193535 Msa0293450:three_prime_UTR
TGAGGTTGAGAATAATGGAG+AGG 0.653412 2_3:-44190828 Msa0293450:three_prime_UTR
ATGTATTTCCTCGACCACAA+AGG 0.661861 2_3:+44193973 None:intergenic
ATCAGCATTGAATGGAACTG+TGG 0.669599 2_3:-44189143 Msa0293450:three_prime_UTR
GACTCATAAACCATTGTCTG+AGG 0.676132 2_3:-44190846 Msa0293450:three_prime_UTR
CATGTTTGAAGAAGAGACTG+AGG 0.677238 2_3:-44190889 Msa0293450:three_prime_UTR
TCCATAACCATGAGTCTCTG+AGG 0.679516 2_3:+44193461 None:intergenic
GATAGAAACAATTCTAGACA+AGG 0.686128 2_3:-44191534 Msa0293450:intron
TGGCTTTATAGAGCGTCCAG+AGG 0.686251 2_3:-44191827 Msa0293450:intron
GGTAGTTCTTCACCCAAACG+GGG 0.694425 2_3:-44192970 Msa0293450:three_prime_UTR
ACGTGCACAAAGAAGAAAGG+AGG 0.694653 2_3:-44189808 Msa0293450:intron
AAAGAACTGCAATTTCTGTG+AGG 0.735811 2_3:-44189884 Msa0293450:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATGGAAAATATTATAT+AGG - chr2_3:44189364-44189383 Msa0293450:intron 10.0%
!! AAAGTTATTAACAAATATAA+TGG + chr2_3:44190125-44190144 None:intergenic 10.0%
!!! CTTAGATAATTTAATTTAAA+AGG - chr2_3:44191098-44191117 Msa0293450:intron 10.0%
!! ATTATATTATTATATGCTAA+TGG + chr2_3:44192119-44192138 None:intergenic 10.0%
!!! AATTTTTGTTTAATATTATC+AGG - chr2_3:44192172-44192191 Msa0293450:intron 10.0%
!!! AAATTTAATATTTTTCTAAC+TGG - chr2_3:44192899-44192918 Msa0293450:intron 10.0%
!!! TGGTTATATACTTTTTTTAT+AGG - chr2_3:44189752-44189771 Msa0293450:intron 15.0%
!!! ATTTAAAACAGATGAATTAA+AGG + chr2_3:44189997-44190016 None:intergenic 15.0%
!! AATAAAATCATAAAATTCAG+TGG + chr2_3:44191686-44191705 None:intergenic 15.0%
!! ATTTCATATCTAATATTCTA+TGG + chr2_3:44191987-44192006 None:intergenic 15.0%
!!! ATGAACATAACTTTTTAAAA+CGG + chr2_3:44192447-44192466 None:intergenic 15.0%
!!! TTAATTAGTTTTGTTTCAAT+AGG - chr2_3:44193660-44193679 Msa0293450:three_prime_UTR 15.0%
!!! TAATTAGTTTTGTTTCAATA+GGG - chr2_3:44193661-44193680 Msa0293450:three_prime_UTR 15.0%
!! TAGAATTAATTATAAAGTAG+AGG + chr2_3:44194120-44194139 None:intergenic 15.0%
!! CTAAATCAAATAATAAGTTT+AGG + chr2_3:44194232-44194251 None:intergenic 15.0%
!!! CTAAACTTATTATTTGATTT+AGG - chr2_3:44194230-44194249 Msa0293450:intron 15.0%
!!! TCTATTTTCATAAGCTATAT+TGG - chr2_3:44189172-44189191 Msa0293450:three_prime_UTR 20.0%
!!! GTAAAGTGCTTTATTTAAAA+TGG - chr2_3:44189349-44189368 Msa0293450:intron 20.0%
!! CAAAAATTAGATTTGAGAAT+CGG + chr2_3:44189437-44189456 None:intergenic 20.0%
!!! CACTTTTTATGATCTTAAAA+TGG - chr2_3:44189563-44189582 Msa0293450:intron 20.0%
!!! TTTCTACTTATATTTAAGGT+CGG + chr2_3:44189808-44189827 None:intergenic 20.0%
!! AACCTTTCTACTTATATTTA+AGG + chr2_3:44189812-44189831 None:intergenic 20.0%
!! ATAAAACAAATTTGATCCAA+TGG + chr2_3:44190340-44190359 None:intergenic 20.0%
!! CTGAAAAGGATAAAAAATTT+AGG + chr2_3:44191020-44191039 None:intergenic 20.0%
!!! AAAAAGTTATTTCACAAGAA+TGG + chr2_3:44191297-44191316 None:intergenic 20.0%
!!! AAATAACTTTTTCAATTGAC+TGG - chr2_3:44191305-44191324 Msa0293450:intron 20.0%
!! ATAATCTTTCACTTATATCT+TGG + chr2_3:44192984-44193003 None:intergenic 20.0%
!!! TTTTATGAAATGGACTATAT+AGG + chr2_3:44193020-44193039 None:intergenic 20.0%
!! CAAAATCAATTATCTTACAT+AGG + chr2_3:44193103-44193122 None:intergenic 20.0%
!!! CTATGTAAGATAATTGATTT+TGG - chr2_3:44193101-44193120 Msa0293450:three_prime_UTR 20.0%
!!! TTAAAATGTTTCTTGTTATC+AGG + chr2_3:44193383-44193402 None:intergenic 20.0%
!! TTATAAACCTTATAGTCAAA+GGG - chr2_3:44193442-44193461 Msa0293450:three_prime_UTR 20.0%
!! AAAATATCATTGCTAGAATA+AGG + chr2_3:44193492-44193511 None:intergenic 20.0%
! ACTTATATGATAAGTGTGAA+TGG + chr2_3:44189085-44189104 Msa0293440:CDS 25.0%
!! ATCTAATTTTTGAACCTTTG+TGG - chr2_3:44189445-44189464 Msa0293450:three_prime_UTR 25.0%
!! TTGATATTCTCAGAAGATTT+TGG - chr2_3:44189495-44189514 Msa0293450:three_prime_UTR 25.0%
! AGAAGACATTAGAAATGAAA+AGG - chr2_3:44189722-44189741 Msa0293450:intron 25.0%
! GACCTTAAATATAAGTAGAA+AGG - chr2_3:44189807-44189826 Msa0293450:intron 25.0%
!! ACAAATACATGTACCTTTTT+CGG - chr2_3:44189844-44189863 Msa0293450:three_prime_UTR 25.0%
!!! ACCTTTTTCGGTTAAATATA+AGG - chr2_3:44189856-44189875 Msa0293450:three_prime_UTR 25.0%
! ACCTTATATTTAACCGAAAA+AGG + chr2_3:44189860-44189879 None:intergenic 25.0%
!! TTTTCGGTTAAATATAAGGT+CGG - chr2_3:44189860-44189879 Msa0293450:three_prime_UTR 25.0%
! ACTTTCTTCTCAAAATCATT+TGG - chr2_3:44189920-44189939 Msa0293450:intron 25.0%
! CTTTCTTCTCAAAATCATTT+GGG - chr2_3:44189921-44189940 Msa0293450:intron 25.0%
!! TGTTTGGATTGATTTATTTG+AGG - chr2_3:44190205-44190224 Msa0293450:intron 25.0%
! TAAACATTTGTGAGACTATT+TGG - chr2_3:44190241-44190260 Msa0293450:intron 25.0%
! AAACATTTGTGAGACTATTT+GGG - chr2_3:44190242-44190261 Msa0293450:intron 25.0%
! ATGCAGTAATTGATATTACA+AGG - chr2_3:44190437-44190456 Msa0293450:intron 25.0%
! AGTAATTGATATTACAAGGA+TGG - chr2_3:44190441-44190460 Msa0293450:intron 25.0%
!! AAGCATTTTGAATCTGAAAA+AGG - chr2_3:44190499-44190518 Msa0293450:intron 25.0%
! ACAATTAGGAATGATAGTAT+TGG - chr2_3:44190762-44190781 Msa0293450:three_prime_UTR 25.0%
! TGGCTTCTTCAAAAAAAAAA+AGG - chr2_3:44190782-44190801 Msa0293450:three_prime_UTR 25.0%
! TTCTTTATAAGACCTTCATT+AGG + chr2_3:44191056-44191075 None:intergenic 25.0%
!! AATGAAGGTCTTATAAAGAA+TGG - chr2_3:44191056-44191075 Msa0293450:intron 25.0%
! AGGTAAACAACAATAAGTAT+AGG + chr2_3:44191156-44191175 None:intergenic 25.0%
!!! TATACTTATTGTTGTTTACC+TGG - chr2_3:44191155-44191174 Msa0293450:three_prime_UTR 25.0%
! TATGAATGAAAGGATATCAA+TGG + chr2_3:44191197-44191216 None:intergenic 25.0%
! ATATCACTGATATGAATGAA+AGG + chr2_3:44191207-44191226 None:intergenic 25.0%
! TTAAGGTAAACAACAATAAG+TGG + chr2_3:44191499-44191518 None:intergenic 25.0%
! TGTCCTGATATATTATGTTT+GGG - chr2_3:44191539-44191558 Msa0293450:three_prime_UTR 25.0%
! AATCCCAAACATAATATATC+AGG + chr2_3:44191545-44191564 None:intergenic 25.0%
!! AAACGTATCATTTTCATTGA+GGG + chr2_3:44191657-44191676 None:intergenic 25.0%
!! CAGAAAAAAAGTTTTCACTT+AGG + chr2_3:44191709-44191728 None:intergenic 25.0%
!!! CTAAGTGAAAACTTTTTTTC+TGG - chr2_3:44191707-44191726 Msa0293450:intron 25.0%
! AAAATGATATCAATGAGAAG+AGG + chr2_3:44191774-44191793 None:intergenic 25.0%
! TATGCTAATGGAGATAAAAT+TGG + chr2_3:44192107-44192126 None:intergenic 25.0%
! TTAAGACCTGATTTAAAAAG+AGG - chr2_3:44192241-44192260 Msa0293450:intron 25.0%
!! AATGTTCCTCTTTTTAAATC+AGG + chr2_3:44192250-44192269 None:intergenic 25.0%
! CATAGGAGAAGATAAAAATA+GGG + chr2_3:44192351-44192370 None:intergenic 25.0%
!! TTCATTTTCTTCTTATCAGA+TGG - chr2_3:44192462-44192481 Msa0293450:intron 25.0%
! TCATTGGATAATAATATCTC+CGG + chr2_3:44192659-44192678 None:intergenic 25.0%
! TTTCAAAAGGTTCAATTCAT+TGG + chr2_3:44192675-44192694 None:intergenic 25.0%
!! ACAAAGAGTTTTTCATAGAT+AGG - chr2_3:44192792-44192811 Msa0293450:intron 25.0%
!! TATTTTTCTAACTGGAACAT+AGG - chr2_3:44192907-44192926 Msa0293450:intron 25.0%
!! ATTTTTCTAACTGGAACATA+GGG - chr2_3:44192908-44192927 Msa0293450:intron 25.0%
! TCCATTTCATAAAATCACTT+GGG - chr2_3:44193026-44193045 Msa0293450:three_prime_UTR 25.0%
! AATTAAAGAATGCTTCCAAA+GGG + chr2_3:44193057-44193076 None:intergenic 25.0%
! AAATTAAAGAATGCTTCCAA+AGG + chr2_3:44193058-44193077 None:intergenic 25.0%
! TCAGAACAAAAGAAATTGAA+TGG + chr2_3:44193199-44193218 None:intergenic 25.0%
!! TTCTTTGTTATATAGTGCAA+TGG - chr2_3:44193222-44193241 Msa0293450:three_prime_UTR 25.0%
!! TCTTTGTTATATAGTGCAAT+GGG - chr2_3:44193223-44193242 Msa0293450:three_prime_UTR 25.0%
! TTCAGATAGTGAAATGTTTA+TGG - chr2_3:44193255-44193274 Msa0293450:three_prime_UTR 25.0%
!!! TAACAAGAAACATTTTAACG+AGG - chr2_3:44193385-44193404 Msa0293450:three_prime_UTR 25.0%
! CTTATAAACCTTATAGTCAA+AGG - chr2_3:44193441-44193460 Msa0293450:three_prime_UTR 25.0%
! AACTATGACACAAATAAAAG+GGG + chr2_3:44193713-44193732 None:intergenic 25.0%
! GAACTATGACACAAATAAAA+GGG + chr2_3:44193714-44193733 None:intergenic 25.0%
! AGAACTATGACACAAATAAA+AGG + chr2_3:44193715-44193734 None:intergenic 25.0%
! TTCTATTCAAAATCAAGCAA+TGG - chr2_3:44193731-44193750 Msa0293450:CDS 25.0%
! AGAAGAATAAAAAAGAAGCA+AGG - chr2_3:44193760-44193779 Msa0293450:CDS 25.0%
! AAAAAAGAAGCAAGGTAAAA+AGG - chr2_3:44193768-44193787 Msa0293450:CDS 25.0%
! AAAAAGAAGCAAGGTAAAAA+GGG - chr2_3:44193769-44193788 Msa0293450:CDS 25.0%
!!! TCTAATTTGTTCAACGATTA+AGG - chr2_3:44193884-44193903 Msa0293450:intron 25.0%
!! TAATATACATCAGCATTGAA+TGG - chr2_3:44194281-44194300 Msa0293450:intron 25.0%
! TGAAGATTATAGACAGAATA+TGG - chr2_3:44194515-44194534 Msa0293450:CDS 25.0%
AGCAATATGGTGAAAGAAAA+TGG - chr2_3:44188881-44188900 Msa0293450:three_prime_UTR 30.0%
GCAATATGGTGAAAGAAAAT+GGG - chr2_3:44188882-44188901 Msa0293450:three_prime_UTR 30.0%
!! AACAATCCTAGAAGTGTTTA+TGG - chr2_3:44189263-44189282 Msa0293450:intron 30.0%
TAATTAGACCATGTTTGGAT+TGG + chr2_3:44189310-44189329 None:intergenic 30.0%
ACAGATAATTAGACCATGTT+TGG + chr2_3:44189315-44189334 None:intergenic 30.0%
! AAAAAGTGTAAATGCTGCAA+AGG + chr2_3:44189551-44189570 None:intergenic 30.0%
TGTAGGTACTTTGACAATTA+TGG - chr2_3:44189618-44189637 Msa0293450:intron 30.0%
AGAAATGAAAAGGTCTCATA+TGG - chr2_3:44189732-44189751 Msa0293450:intron 30.0%
! TACTTATATTTAAGGTCGGA+GGG + chr2_3:44189804-44189823 None:intergenic 30.0%
CATGACTTTCAATTGCTTAA+TGG - chr2_3:44190030-44190049 Msa0293450:three_prime_UTR 30.0%
GTCATAACTTAGTTGTGTTA+TGG - chr2_3:44190147-44190166 Msa0293450:intron 30.0%
GACAATAAATGCTACAACAA+TGG + chr2_3:44190177-44190196 None:intergenic 30.0%
TTGTAGCATTTATTGTCTAG+AGG - chr2_3:44190180-44190199 Msa0293450:intron 30.0%
TTGGGAGAATTTATATTTCC+TGG - chr2_3:44190260-44190279 Msa0293450:intron 30.0%
TGTTATCTCTGTAAAACCAT+TGG - chr2_3:44190321-44190340 Msa0293450:intron 30.0%
! AAGTTTACTGATTAAGAAGC+AGG + chr2_3:44190369-44190388 None:intergenic 30.0%
TCTTAATCAGTAAACTTCTC+TGG - chr2_3:44190372-44190391 Msa0293450:intron 30.0%
ATTGTGTTCCAACAAAATGA+TGG + chr2_3:44190536-44190555 None:intergenic 30.0%
!!! TACCTTCGTGTTGATTTTTA+TGG + chr2_3:44190684-44190703 None:intergenic 30.0%
ATACTAGACGAGATACAATT+AGG - chr2_3:44190748-44190767 Msa0293450:three_prime_UTR 30.0%
TCTTAAACGCAATGAGTAAA+TGG - chr2_3:44190965-44190984 Msa0293450:intron 30.0%
AAATGAAAGAAGAGTCATGA+GGG + chr2_3:44191257-44191276 None:intergenic 30.0%
TAAATGAAAGAAGAGTCATG+AGG + chr2_3:44191258-44191277 None:intergenic 30.0%
AATTTCTGACATCGTATCAA+TGG + chr2_3:44191335-44191354 None:intergenic 30.0%
TCTATTTGATGTCAAGAGAA+AGG - chr2_3:44191374-44191393 Msa0293450:three_prime_UTR 30.0%
CTATTTGATGTCAAGAGAAA+GGG - chr2_3:44191375-44191394 Msa0293450:three_prime_UTR 30.0%
AGATCAAAGTGAGGAATTTA+AGG + chr2_3:44191516-44191535 None:intergenic 30.0%
CTGTCCTGATATATTATGTT+TGG - chr2_3:44191538-44191557 Msa0293450:three_prime_UTR 30.0%
AATAATAATCATCTCACCTC+TGG + chr2_3:44191624-44191643 None:intergenic 30.0%
! CAAACGTATCATTTTCATTG+AGG + chr2_3:44191658-44191677 None:intergenic 30.0%
!!! GAAAACTTTTTTTCTGGTCT+TGG - chr2_3:44191713-44191732 Msa0293450:intron 30.0%
!! TTGCTTTTCTTTCCCTTATT+TGG - chr2_3:44191803-44191822 Msa0293450:intron 30.0%
!! TTTCGAGTTTGAAATGAAGT+TGG - chr2_3:44191865-44191884 Msa0293450:intron 30.0%
GATAGAAACAATTCTAGACA+AGG - chr2_3:44191898-44191917 Msa0293450:intron 30.0%
AACAATATTTATTCTGCAGG+TGG + chr2_3:44192016-44192035 None:intergenic 30.0%
AGCAACAATATTTATTCTGC+AGG + chr2_3:44192019-44192038 None:intergenic 30.0%
ATTAATTTACCTGCTTGCTT+AGG + chr2_3:44192081-44192100 None:intergenic 30.0%
CCATAGGAGAAGATAAAAAT+AGG + chr2_3:44192352-44192371 None:intergenic 30.0%
!!! CCTATTTTTATCTTCTCCTA+TGG - chr2_3:44192349-44192368 Msa0293450:three_prime_UTR 30.0%
CAGACAATGAAATGAATCTA+TGG - chr2_3:44192516-44192535 Msa0293450:three_prime_UTR 30.0%
TTGAACTCTCTGATTTCAAA+AGG + chr2_3:44192688-44192707 None:intergenic 30.0%
! ATTTCCATTGCATATGCTTT+TGG + chr2_3:44192758-44192777 None:intergenic 30.0%
! AAAAGCATATGCAATGGAAA+TGG - chr2_3:44192757-44192776 Msa0293450:intron 30.0%
AAATTTCCCATCAAATCTGA+GGG + chr2_3:44192827-44192846 None:intergenic 30.0%
AAAATTTCCCATCAAATCTG+AGG + chr2_3:44192828-44192847 None:intergenic 30.0%
TTTGTATAACTCATCTGAAG+TGG + chr2_3:44192851-44192870 None:intergenic 30.0%
! TTTTTCTAACTGGAACATAG+GGG - chr2_3:44192909-44192928 Msa0293450:intron 30.0%
GTCCATTTCATAAAATCACT+TGG - chr2_3:44193025-44193044 Msa0293450:three_prime_UTR 30.0%
! ACCCAAGTGATTTTATGAAA+TGG + chr2_3:44193030-44193049 None:intergenic 30.0%
CTTACATAGGTATAGATTCA+AGG + chr2_3:44193090-44193109 None:intergenic 30.0%
! TTCTTGTTATCAGGTTTCAA+TGG + chr2_3:44193374-44193393 None:intergenic 30.0%
AGAAATTGCAGTTCTTTACA+TGG + chr2_3:44193545-44193564 None:intergenic 30.0%
! GGTTTTCATCTCAAATTGAT+CGG - chr2_3:44193682-44193701 Msa0293450:CDS 30.0%
CAGAATGACAATGTAATTCA+TGG + chr2_3:44193817-44193836 None:intergenic 30.0%
TGTGAAAATATGAACTTAGG+TGG + chr2_3:44193996-44194015 None:intergenic 30.0%
CTGTGTGAAAATATGAACTT+AGG + chr2_3:44193999-44194018 None:intergenic 30.0%
GTTTGTATATTCTTAAGAGC+TGG - chr2_3:44194350-44194369 Msa0293450:intron 30.0%
ATGTTCCATTATATTCCTTG+AGG - chr2_3:44194390-44194409 Msa0293450:intron 30.0%
!! TTTTCTGCTCATATTTCTGA+AGG + chr2_3:44194573-44194592 None:intergenic 30.0%
!! ATAAGGTTGGTGAAGCAATA+TGG - chr2_3:44188868-44188887 Msa0293450:three_prime_UTR 35.0%
CAAATAGCTGAGAAGTTAGA+AGG - chr2_3:44188907-44188926 Msa0293450:three_prime_UTR 35.0%
! TGACTGAGGATCAAATTTTC+AGG - chr2_3:44189012-44189031 Msa0293450:three_prime_UTR 35.0%
AACTACACTTTGACTGTGTT+TGG - chr2_3:44189041-44189060 Msa0293450:three_prime_UTR 35.0%
!! ACACTTCTAGGATTGTTTGA+AGG + chr2_3:44189260-44189279 Msa0293440:exon 35.0%
CAAACAATCCAATCCAAACA+TGG - chr2_3:44189299-44189318 Msa0293450:intron 35.0%
TATAGGATCGATCACTATCT+TGG - chr2_3:44189381-44189400 Msa0293450:intron 35.0%
!! TCAGAAGATTTTGGTACTGA+AGG - chr2_3:44189504-44189523 Msa0293450:three_prime_UTR 35.0%
TTCATATCTGTTCCATGTGT+AGG - chr2_3:44189601-44189620 Msa0293450:intron 35.0%
! ATTGTCAAAGTACCTACACA+TGG + chr2_3:44189616-44189635 None:intergenic 35.0%
TTCTACATCCAAACTAACAG+GGG + chr2_3:44189706-44189725 None:intergenic 35.0%
CTTCTACATCCAAACTAACA+GGG + chr2_3:44189707-44189726 None:intergenic 35.0%
TCTTCTACATCCAAACTAAC+AGG + chr2_3:44189708-44189727 None:intergenic 35.0%
! CTACTTATATTTAAGGTCGG+AGG + chr2_3:44189805-44189824 None:intergenic 35.0%
!!! AAAGTCCAGGTTTTAAACTC+TGG + chr2_3:44189905-44189924 None:intergenic 35.0%
!! TGATTTTGAGAAGAAAGTCC+AGG + chr2_3:44189918-44189937 None:intergenic 35.0%
TCTTCTCAAAATCATTTGGG+TGG - chr2_3:44189924-44189943 Msa0293450:intron 35.0%
! TCAATTGCTTAATGGATGTC+AGG - chr2_3:44190038-44190057 Msa0293450:three_prime_UTR 35.0%
! TTATTGTCTAGAGGCATGTT+TGG - chr2_3:44190189-44190208 Msa0293450:intron 35.0%
!! AGTAAACTTCTCTGGTCTTA+AGG - chr2_3:44190380-44190399 Msa0293450:intron 35.0%
!! TTCTCTGGTCTTAAGGAAAA+TGG - chr2_3:44190387-44190406 Msa0293450:intron 35.0%
! CAGCATTTCCATCATTTTGT+TGG - chr2_3:44190525-44190544 Msa0293450:intron 35.0%
AGTGTCTCATATTGCAAAGA+CGG + chr2_3:44190583-44190602 None:intergenic 35.0%
TGCGCATTGTTTGATATCAT+TGG - chr2_3:44190632-44190651 Msa0293450:intron 35.0%
AGCCATAAAAATCAACACGA+AGG - chr2_3:44190679-44190698 Msa0293450:three_prime_UTR 35.0%
ACGAAGGTAAATCAATGTAG+CGG - chr2_3:44190695-44190714 Msa0293450:three_prime_UTR 35.0%
! TAAATCAATGTAGCGGAGAT+CGG - chr2_3:44190702-44190721 Msa0293450:three_prime_UTR 35.0%
GATTGATGTTGACACTGAAA+AGG + chr2_3:44191034-44191053 None:intergenic 35.0%
GTCAACATCAATCCTAATGA+AGG - chr2_3:44191041-44191060 Msa0293450:intron 35.0%
AATGAAAGAAGAGTCATGAG+GGG + chr2_3:44191256-44191275 None:intergenic 35.0%
AGAATGGCTTAGTTTCATCT+TGG + chr2_3:44191281-44191300 None:intergenic 35.0%
AGGTAAACAACAATAAGTGG+AGG + chr2_3:44191496-44191515 None:intergenic 35.0%
! ATTTTCCTGCAGTCTCATTT+AGG - chr2_3:44191562-44191581 Msa0293450:three_prime_UTR 35.0%
TGTCAGACATCACCAAATAA+GGG + chr2_3:44191818-44191837 None:intergenic 35.0%
TTATCAGGTTTGCAAAGATG+TGG - chr2_3:44192187-44192206 Msa0293450:intron 35.0%
TTCATGCAGTACTAGGAAAT+AGG - chr2_3:44192302-44192321 Msa0293450:intron 35.0%
TATCACTCTTGCTTAACCAT+AGG + chr2_3:44192368-44192387 None:intergenic 35.0%
ATGGTTAAGCAAGAGTGATA+AGG - chr2_3:44192368-44192387 Msa0293450:three_prime_UTR 35.0%
TATCAGATGGTCTCAAATTG+CGG - chr2_3:44192475-44192494 Msa0293450:intron 35.0%
TTATTCTCAACCTCAGACAA+TGG + chr2_3:44192599-44192618 None:intergenic 35.0%
! TTGTCTGAGGTTGAGAATAA+TGG - chr2_3:44192599-44192618 Msa0293450:three_prime_UTR 35.0%
! TTCACCAAAAGCATATGCAA+TGG - chr2_3:44192751-44192770 Msa0293450:intron 35.0%
ATTCAACCCTCAGATTTGAT+GGG - chr2_3:44192818-44192837 Msa0293450:intron 35.0%
TTATATAGTGCAATGGGCAT+AGG - chr2_3:44193229-44193248 Msa0293450:three_prime_UTR 35.0%
AATGGTTTCCTTGAAACTGA+AGG + chr2_3:44193356-44193375 None:intergenic 35.0%
ATTCATGTTCAGTTGCTTCT+GGG - chr2_3:44193411-44193430 Msa0293450:three_prime_UTR 35.0%
TTTGACACCCTTTGACTATA+AGG + chr2_3:44193452-44193471 None:intergenic 35.0%
AAAGAACTGCAATTTCTGTG+AGG - chr2_3:44193548-44193567 Msa0293450:three_prime_UTR 35.0%
GAAAATATGAACTTAGGTGG+AGG + chr2_3:44193993-44194012 None:intergenic 35.0%
ATATAGTCCGAGACAGATAT+GGG - chr2_3:44194030-44194049 Msa0293450:CDS 35.0%
TGGGAAGAAAGAATGATTGT+AGG - chr2_3:44194049-44194068 Msa0293450:CDS 35.0%
! TTATGCTCTAGATTTGAGTC+TGG - chr2_3:44194254-44194273 Msa0293450:intron 35.0%
CCTTTCCTCAAGGAATATAA+TGG + chr2_3:44194398-44194417 None:intergenic 35.0%
CCATTATATTCCTTGAGGAA+AGG - chr2_3:44194395-44194414 Msa0293450:intron 35.0%
TATTGCAGATACATTGCACT+TGG + chr2_3:44194428-44194447 None:intergenic 35.0%
TAGCTGAGAAGTTAGAAGGA+AGG - chr2_3:44188911-44188930 Msa0293450:three_prime_UTR 40.0%
AGCTGAGAAGTTAGAAGGAA+GGG - chr2_3:44188912-44188931 Msa0293450:three_prime_UTR 40.0%
TGATCTTGTTAAAGCAGCTG+AGG + chr2_3:44188979-44188998 Msa0293440:intron 40.0%
ATTCAAGCAGTATCTGACTG+AGG - chr2_3:44188998-44189017 Msa0293450:three_prime_UTR 40.0%
CTATCTTGGAAAAGAGCTTG+TGG - chr2_3:44189395-44189414 Msa0293450:three_prime_UTR 40.0%
! TTTTTGAACCTTTGTGGTCG+AGG - chr2_3:44189451-44189470 Msa0293450:three_prime_UTR 40.0%
ATGTATTTCCTCGACCACAA+AGG + chr2_3:44189462-44189481 None:intergenic 40.0%
AATACTAGCCCTCTTTGCAA+TGG - chr2_3:44189677-44189696 Msa0293450:three_prime_UTR 40.0%
AATGGAAACCCCTGTTAGTT+TGG - chr2_3:44189695-44189714 Msa0293450:three_prime_UTR 40.0%
TCGGTTAAATATAAGGTCGG+AGG - chr2_3:44189863-44189882 Msa0293450:three_prime_UTR 40.0%
! AGAAGCCAGAGTTTAAAACC+TGG - chr2_3:44189897-44189916 Msa0293450:intron 40.0%
CGATCTTTGCTGCAAAAACA+TGG - chr2_3:44190090-44190109 Msa0293450:three_prime_UTR 40.0%
TTCAGAAACTTCAACTGACC+AGG + chr2_3:44190281-44190300 None:intergenic 40.0%
ATGGTAGTTCTTCACCCAAA+CGG - chr2_3:44190460-44190479 Msa0293450:intron 40.0%
!! CAAAAGTCCATTTGTTGTCC+AGG + chr2_3:44190875-44190894 None:intergenic 40.0%
!! CTGGACAACAAATGGACTTT+TGG - chr2_3:44190873-44190892 Msa0293450:three_prime_UTR 40.0%
! CTCTATGATTTGCACCTTAC+TGG - chr2_3:44191585-44191604 Msa0293450:three_prime_UTR 40.0%
CTGTCAGACATCACCAAATA+AGG + chr2_3:44191819-44191838 None:intergenic 40.0%
!! CTTATTTGGTGATGTCTGAC+AGG - chr2_3:44191817-44191836 Msa0293450:intron 40.0%
! CGAGTTTGAAATGAAGTTGG+CGG - chr2_3:44191868-44191887 Msa0293450:intron 40.0%
GTTGCTGATAGAACAACGTA+TGG - chr2_3:44192033-44192052 Msa0293450:three_prime_UTR 40.0%
GATAGAACAACGTATGGTCA+TGG - chr2_3:44192039-44192058 Msa0293450:three_prime_UTR 40.0%
AAGAGGAACATTCTCACAAG+AGG - chr2_3:44192258-44192277 Msa0293450:intron 40.0%
GTTGAACTTCATGCAGTACT+AGG - chr2_3:44192295-44192314 Msa0293450:intron 40.0%
GTTAAGCAAGAGTGATAAGG+AGG - chr2_3:44192371-44192390 Msa0293450:three_prime_UTR 40.0%
ATTTCATTGTCTGTCCTTCC+CGG + chr2_3:44192509-44192528 None:intergenic 40.0%
CATGTTTGAAGAAGAGACTG+AGG - chr2_3:44192543-44192562 Msa0293450:three_prime_UTR 40.0%
AAGAAGAGACTGAGGCAAAA+AGG - chr2_3:44192551-44192570 Msa0293450:three_prime_UTR 40.0%
GACAATGGTTTATGAGTCAC+AGG + chr2_3:44192584-44192603 None:intergenic 40.0%
GACTCATAAACCATTGTCTG+AGG - chr2_3:44192586-44192605 Msa0293450:three_prime_UTR 40.0%
! TGAGGTTGAGAATAATGGAG+AGG - chr2_3:44192604-44192623 Msa0293450:three_prime_UTR 40.0%
! TAAGAGTCAAGAGAAAGCAC+CGG - chr2_3:44192637-44192656 Msa0293450:intron 40.0%
GCATATGCAATGGAAATGGA+AGG - chr2_3:44192761-44192780 Msa0293450:intron 40.0%
CATTCAACCCTCAGATTTGA+TGG - chr2_3:44192817-44192836 Msa0293450:intron 40.0%
ATCACTTGGGTAAAACCCTT+TGG - chr2_3:44193039-44193058 Msa0293450:three_prime_UTR 40.0%
TGAAGTCTCCTTCAGTTTCA+AGG - chr2_3:44193345-44193364 Msa0293450:three_prime_UTR 40.0%
GATTCATGTTCAGTTGCTTC+TGG - chr2_3:44193410-44193429 Msa0293450:three_prime_UTR 40.0%
TGCAGTTCTTTACATGGTCA+CGG + chr2_3:44193539-44193558 None:intergenic 40.0%
TGAACGTGCACAAAGAAGAA+AGG - chr2_3:44193621-44193640 Msa0293450:three_prime_UTR 40.0%
AAGAAGCCATCAAACAGTTG+AGG - chr2_3:44193916-44193935 Msa0293450:intron 40.0%
ACTTCTCCTCAACTGTTTGA+TGG + chr2_3:44193925-44193944 None:intergenic 40.0%
! TATGCCAAGCTTTTACCATG+AGG - chr2_3:44193965-44193984 Msa0293450:CDS 40.0%
! ATGCCAAGCTTTTACCATGA+GGG - chr2_3:44193966-44193985 Msa0293450:CDS 40.0%
CATATAGTCCGAGACAGATA+TGG - chr2_3:44194029-44194048 Msa0293450:CDS 40.0%
CTTTCTTCCCATATCTGTCT+CGG + chr2_3:44194040-44194059 None:intergenic 40.0%
! ATCAGCATTGAATGGAACTG+TGG - chr2_3:44194289-44194308 Msa0293450:intron 40.0%
CAAACATCTCTCAACAATGC+AGG + chr2_3:44194335-44194354 None:intergenic 40.0%
GAGAAGTTAGAAGGAAGGGT+TGG - chr2_3:44188916-44188935 Msa0293450:three_prime_UTR 45.0%
GGATTGTTTGAAGGAGCTCA+TGG + chr2_3:44189251-44189270 Msa0293440:exon 45.0%
CCACTGCCATAAACACTTCT+AGG + chr2_3:44189272-44189291 None:intergenic 45.0%
!! CCTAGAAGTGTTTATGGCAG+TGG - chr2_3:44189269-44189288 Msa0293450:intron 45.0%
!! GATTTTGGTACTGAAGGACG+TGG - chr2_3:44189510-44189529 Msa0293450:three_prime_UTR 45.0%
AGGGGTTTCCATTGCAAAGA+GGG + chr2_3:44189688-44189707 None:intergenic 45.0%
TCCATAACCATGAGTCTCTG+AGG + chr2_3:44189974-44189993 None:intergenic 45.0%
! GCTTAATGGATGTCAGGTCA+AGG - chr2_3:44190044-44190063 Msa0293450:three_prime_UTR 45.0%
TGGTAGTTCTTCACCCAAAC+GGG - chr2_3:44190461-44190480 Msa0293450:intron 45.0%
AGATCGGAATGTTGTGCTAG+AGG - chr2_3:44190718-44190737 Msa0293450:three_prime_UTR 45.0%
TTGTCTTCTAGCACTGCGTT+CGG + chr2_3:44191447-44191466 None:intergenic 45.0%
AGGACAGACAGATCAAAGTG+AGG + chr2_3:44191525-44191544 None:intergenic 45.0%
TAGAGCCTAAATGAGACTGC+AGG + chr2_3:44191570-44191589 None:intergenic 45.0%
GACGCTCTATAAAGCCAGTA+AGG + chr2_3:44191602-44191621 None:intergenic 45.0%
CAACGTATGGTCATGGATGT+TGG - chr2_3:44192046-44192065 Msa0293450:three_prime_UTR 45.0%
AGTTCAGTACCTAAGCAAGC+AGG - chr2_3:44192069-44192088 Msa0293450:three_prime_UTR 45.0%
AAAGATGTGGTAAGAGCTGC+AGG - chr2_3:44192200-44192219 Msa0293450:intron 45.0%
AAGAGTGATAAGGAGGTCGA+GGG - chr2_3:44192378-44192397 Msa0293450:three_prime_UTR 45.0%
TGAAGGAGACTTCAACTGCA+AGG + chr2_3:44193339-44193358 None:intergenic 45.0%
TGTGAGGTCGTTCAAATCCA+GGG - chr2_3:44193564-44193583 Msa0293450:three_prime_UTR 45.0%
! TTGCTTCTGCTCCAAGCTTT+TGG - chr2_3:44193593-44193612 Msa0293450:three_prime_UTR 45.0%
ACGTGCACAAAGAAGAAAGG+AGG - chr2_3:44193624-44193643 Msa0293450:three_prime_UTR 45.0%
! TGCCAAGCTTTTACCATGAG+GGG - chr2_3:44193967-44193986 Msa0293450:CDS 45.0%
TCTCTCAACAATGCAGGACT+TGG + chr2_3:44194329-44194348 None:intergenic 45.0%
TGGCAATGAACCTTTCCTCA+AGG + chr2_3:44194408-44194427 None:intergenic 45.0%
! CTCATATTTCTGAAGGCTGC+AGG + chr2_3:44194566-44194585 None:intergenic 45.0%
!!! TTAGATAATTTAATTTAAAA+GGG - chr2_3:44191099-44191118 Msa0293450:intron 5.0%
CAGGGGTTTCCATTGCAAAG+AGG + chr2_3:44189689-44189708 None:intergenic 50.0%
GCCTCAGAGACTCATGGTTA+TGG - chr2_3:44189970-44189989 Msa0293450:intron 50.0%
GATCGACGAATCGACTGAGT+AGG + chr2_3:44190075-44190094 None:intergenic 50.0%
GGTAGTTCTTCACCCAAACG+GGG - chr2_3:44190462-44190481 Msa0293450:intron 50.0%
GAAGTGCAATAGCCCCGTTT+GGG + chr2_3:44190477-44190496 None:intergenic 50.0%
TGAAGTGCAATAGCCCCGTT+TGG + chr2_3:44190478-44190497 None:intergenic 50.0%
GGTGGTTCCTGGACAACAAA+TGG - chr2_3:44190865-44190884 Msa0293450:three_prime_UTR 50.0%
TGTCTTCTAGCACTGCGTTC+GGG + chr2_3:44191446-44191465 None:intergenic 50.0%
!! TGGCTTTATAGAGCGTCCAG+AGG - chr2_3:44191605-44191624 Msa0293450:intron 50.0%
CAAGAGTGATAAGGAGGTCG+AGG - chr2_3:44192377-44192396 Msa0293450:three_prime_UTR 50.0%
TCAAATTGCGGCGCAATTGC+CGG - chr2_3:44192487-44192506 Msa0293450:intron 50.0%
CTGTGAGGTCGTTCAAATCC+AGG - chr2_3:44193563-44193582 Msa0293450:three_prime_UTR 50.0%
CGTTCAGCTGACCAAAAGCT+TGG + chr2_3:44193607-44193626 None:intergenic 50.0%
GCAAGCAGTGTAGAGAGCGA+TGG - chr2_3:44188938-44188957 Msa0293450:three_prime_UTR 55.0%
! TTGGTACTGAAGGACGTGGC+AGG - chr2_3:44189514-44189533 Msa0293450:three_prime_UTR 55.0%
!! TCTCTGAGGCGTAGCTCAAG+TGG + chr2_3:44189960-44189979 None:intergenic 55.0%
AGCTACGCCTCAGAGACTCA+TGG - chr2_3:44189964-44189983 Msa0293450:intron 55.0%
GCATCTCAACCTGCCTTCTC+CGG - chr2_3:44190838-44190857 Msa0293450:three_prime_UTR 55.0%
TGTCCAGGAACCACCTACAC+CGG + chr2_3:44190860-44190879 None:intergenic 55.0%
TGGAGCAGCTCAGTCAGACT+TGG - chr2_3:44190893-44190912 Msa0293450:three_prime_UTR 55.0%
GGAGCAGCTCAGTCAGACTT+GGG - chr2_3:44190894-44190913 Msa0293450:three_prime_UTR 55.0%
GGTGCAAGCACAAATTCGCC+AGG + chr2_3:44191176-44191195 None:intergenic 55.0%
GTGGTAAGAGCTGCAGGCTT+AGG - chr2_3:44192206-44192225 Msa0293450:intron 55.0%
GTAAGAGCTGCAGGCTTAGG+TGG - chr2_3:44192209-44192228 Msa0293450:intron 55.0%
CAAATTGCGGCGCAATTGCC+GGG - chr2_3:44192488-44192507 Msa0293450:intron 55.0%
GGCCCCTCATGGTAAAAGCT+TGG + chr2_3:44193972-44193991 None:intergenic 55.0%
CAACCTGCCTTCTCCGGTGT+AGG - chr2_3:44190844-44190863 Msa0293450:three_prime_UTR 60.0%
GGAACCACCTACACCGGAGA+AGG + chr2_3:44190854-44190873 None:intergenic 60.0%
TCTCCGGTGTAGGTGGTTCC+TGG - chr2_3:44190854-44190873 Msa0293450:three_prime_UTR 60.0%
CTTCTAGCACTGCGTTCGGG+TGG + chr2_3:44191443-44191462 None:intergenic 60.0%
CGAGGGCTCGATCTCACTCT+CGG - chr2_3:44192395-44192414 Msa0293450:three_prime_UTR 60.0%
AGCAGAAGCAACAGTCGCCC+TGG + chr2_3:44193584-44193603 None:intergenic 60.0%
ACTTAGGTGGAGGCCCCTCA+TGG + chr2_3:44193983-44194002 None:intergenic 60.0%
CCACCTACACCGGAGAAGGC+AGG + chr2_3:44190850-44190869 None:intergenic 65.0%
CCTGCCTTCTCCGGTGTAGG+TGG - chr2_3:44190847-44190866 Msa0293450:three_prime_UTR 65.0%
TTGCGGCGCAATTGCCGGGA+AGG - chr2_3:44192492-44192511 Msa0293450:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 44188862 44194592 44188862 ID=Msa0293450;Name=Msa0293450
chr2_3 mRNA 44188862 44194592 44188862 ID=Msa0293450-mRNA-1;Parent=Msa0293450;Name=Msa0293450-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.93|0.93|1|0.46|0.43|16|2459|127
chr2_3 exon 44188862 44189202 44188862 ID=Msa0293450-mRNA-1:exon:13943;Parent=Msa0293450-mRNA-1
chr2_3 exon 44189388 44189548 44189388 ID=Msa0293450-mRNA-1:exon:13942;Parent=Msa0293450-mRNA-1
chr2_3 exon 44189673 44189723 44189673 ID=Msa0293450-mRNA-1:exon:13941;Parent=Msa0293450-mRNA-1
chr2_3 exon 44189809 44189902 44189809 ID=Msa0293450-mRNA-1:exon:13940;Parent=Msa0293450-mRNA-1
chr2_3 exon 44190022 44190110 44190022 ID=Msa0293450-mRNA-1:exon:13939;Parent=Msa0293450-mRNA-1
chr2_3 exon 44190641 44190973 44190641 ID=Msa0293450-mRNA-1:exon:13938;Parent=Msa0293450-mRNA-1
chr2_3 exon 44191131 44191260 44191131 ID=Msa0293450-mRNA-1:exon:13937;Parent=Msa0293450-mRNA-1
chr2_3 exon 44191364 44191431 44191364 ID=Msa0293450-mRNA-1:exon:13936;Parent=Msa0293450-mRNA-1
chr2_3 exon 44191535 44191615 44191535 ID=Msa0293450-mRNA-1:exon:13935;Parent=Msa0293450-mRNA-1
chr2_3 exon 44191828 44191880 44191828 ID=Msa0293450-mRNA-1:exon:13934;Parent=Msa0293450-mRNA-1
chr2_3 exon 44191980 44192088 44191980 ID=Msa0293450-mRNA-1:exon:13933;Parent=Msa0293450-mRNA-1
chr2_3 exon 44192334 44192414 44192334 ID=Msa0293450-mRNA-1:exon:13932;Parent=Msa0293450-mRNA-1
chr2_3 exon 44192507 44192627 44192507 ID=Msa0293450-mRNA-1:exon:13931;Parent=Msa0293450-mRNA-1
chr2_3 exon 44192934 44193831 44192934 ID=Msa0293450-mRNA-1:exon:13930;Parent=Msa0293450-mRNA-1
chr2_3 exon 44193919 44194068 44193919 ID=Msa0293450-mRNA-1:exon:13929;Parent=Msa0293450-mRNA-1
chr2_3 exon 44194510 44194592 44194510 ID=Msa0293450-mRNA-1:exon:13928;Parent=Msa0293450-mRNA-1
chr2_3 CDS 44194510 44194592 44194510 ID=Msa0293450-mRNA-1:cds;Parent=Msa0293450-mRNA-1
chr2_3 CDS 44193919 44194068 44193919 ID=Msa0293450-mRNA-1:cds;Parent=Msa0293450-mRNA-1
chr2_3 CDS 44193681 44193831 44193681 ID=Msa0293450-mRNA-1:cds;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44192934 44193680 44192934 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44192507 44192627 44192507 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44192334 44192414 44192334 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44191980 44192088 44191980 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44191828 44191880 44191828 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44191535 44191615 44191535 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44191364 44191431 44191364 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44191131 44191260 44191131 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44190641 44190973 44190641 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44190022 44190110 44190022 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44189809 44189902 44189809 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44189673 44189723 44189673 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44189388 44189548 44189388 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
chr2_3 three_prime_UTR 44188862 44189202 44188862 ID=Msa0293450-mRNA-1:three_prime_utr;Parent=Msa0293450-mRNA-1
Gene Sequence

>Msa0293450

AAACTGATAAGGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTCAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAGCAGATCGATCACTATCTTGGAAAAGAGCTTGTGGAAAATCTTTTTGTTCTCCGATTCTCAAATCTAATTTTTGAACCTTTGTGGTCGAGGAAATACATAAAAAATGTACAGTTGATATTCTCAGAAGATTTTGGTACTGAAGGACGTGGCAGGTACTTTGACAATTATGGTATAATTAGACATATTATGCAGAATCATCTACTTCAAATACTAGCCCTCTTTGCAATGGAAACCCCTGTTAGTTTGGATGTAGAAGACATTAGAAATGAAAAGGTCTCATATGGTTATATACTTTTTTTATAG
Protein sequence

>Msa0293450

KLIRLVKQYGERKWAQIAEKLEGRVGKQIDHYLGKELVENLFVLRFSNLIFEPLWSRKYIKNVQLIFSEDFGTEGRGRYFDNYGIIRHIMQNHLLQILALFAMETPVSLDVEDIRNEKVSYGYILFL*