AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0227470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227470 MtrunA17_Chr3g0098481 91.040 346 30 1 124 469 1 345 0.0 645
Msa0227470 MtrunA17_Chr3g0098301 65.238 420 130 5 45 462 1 406 0.0 532
Msa0227470 MtrunA17_Chr3g0098531 70.134 298 88 1 172 469 1 297 1.40e-152 436
Msa0227470 MtrunA17_Chr5g0439061 57.006 314 129 3 158 469 435 744 6.38e-107 333
Msa0227470 MtrunA17_Chr3g0102001 44.273 454 177 11 27 466 355 746 6.78e-103 323
Msa0227470 MtrunA17_Chr5g0439051 61.951 205 76 1 265 469 20 222 2.04e-75 236
Msa0227470 MtrunA17_Chr2g0286601 44.444 306 162 4 161 465 391 689 3.84e-75 249
Msa0227470 MtrunA17_Chr2g0286551 43.934 305 164 3 161 465 371 668 4.67e-69 232
Msa0227470 MtrunA17_Chr5g0439081 55.612 196 84 2 265 460 16 208 7.01e-67 213
Msa0227470 MtrunA17_Chr3g0098511 85.294 102 15 0 368 469 1 102 4.34e-59 189
Msa0227470 MtrunA17_Chr2g0286561 46.009 213 110 3 255 465 5 214 2.52e-52 176
Msa0227470 MtrunA17_Chr2g0297701 34.915 295 181 5 161 452 280 566 5.80e-47 171
Msa0227470 MtrunA17_Chr5g0443001 36.577 298 176 6 163 457 316 603 1.81e-46 170
Msa0227470 MtrunA17_Chr5g0410171 33.236 343 216 5 118 455 397 731 1.61e-45 169
Msa0227470 MtrunA17_Chr5g0410201 32.792 308 201 3 149 455 23 325 7.70e-44 157
Msa0227470 MtrunA17_Chr5g0410271 32.792 308 201 3 149 455 22 324 1.16e-43 156
Msa0227470 MtrunA17_Chr2g0297681 33.225 307 188 5 163 462 402 698 1.21e-43 163
Msa0227470 MtrunA17_Chr2g0297481 34.114 299 177 8 163 456 189 472 5.92e-43 158
Msa0227470 MtrunA17_Chr2g0297491 33.003 303 193 5 163 462 91 386 3.34e-42 154
Msa0227470 MtrunA17_Chr2g0297691 31.935 310 188 7 163 462 404 700 5.25e-42 159
Msa0227470 MtrunA17_Chr6g0456141 32.342 269 176 3 149 416 82 345 3.82e-40 148
Msa0227470 MtrunA17_Chr2g0297651 33.876 307 179 10 163 459 404 696 6.13e-40 152
Msa0227470 MtrunA17_Chr6g0457101 31.481 270 179 3 148 416 385 649 1.08e-38 149
Msa0227470 MtrunA17_Chr2g0284501 33.898 295 183 4 158 451 367 650 1.47e-38 148
Msa0227470 MtrunA17_Chr5g0410341 31.169 308 206 3 149 455 441 743 2.02e-38 148
Msa0227470 MtrunA17_Chr6g0456101 32.550 298 184 5 120 416 421 702 4.78e-38 147
Msa0227470 MtrunA17_Chr3g0100301 37.264 212 126 4 238 446 193 400 1.97e-37 141
Msa0227470 MtrunA17_Chr5g0410371 31.132 318 195 7 161 469 2 304 5.41e-37 137
Msa0227470 MtrunA17_Chr3g0100741 31.707 287 183 6 163 446 311 587 2.33e-36 141
Msa0227470 MtrunA17_Chr5g0410461 29.448 326 197 7 148 457 156 464 1.65e-35 137
Msa0227470 MtrunA17_Chr2g0297711 29.153 295 203 4 163 456 238 527 6.62e-35 136
Msa0227470 MtrunA17_Chr2g0284541 32.653 294 186 3 158 451 351 632 7.11e-33 132
Msa0227470 MtrunA17_Chr5g0410581 29.391 279 189 4 151 426 490 763 8.04e-33 132
Msa0227470 MtrunA17_Chr3g0096941 32.056 287 182 7 163 446 312 588 3.83e-32 129
Msa0227470 MtrunA17_Chr5g0410191 34.211 190 121 2 267 455 4 190 3.60e-30 116
Msa0227470 MtrunA17_Chr5g0439041 46.491 114 55 2 156 265 57 168 2.21e-25 103
Msa0227470 MtrunA17_Chr5g0410541 35.766 137 88 0 280 416 38 174 1.97e-23 98.2
Msa0227470 MtrunA17_Chr5g0410451 31.169 154 105 1 259 411 35 188 9.75e-20 88.2
Msa0227470 MtrunA17_Chr5g0410511 32.418 182 118 3 267 445 4 183 1.38e-19 87.0
Msa0227470 MtrunA17_Chr2g0297611 40.000 90 53 1 270 359 1 89 1.49e-18 80.5
Msa0227470 MtrunA17_Chr5g0410181 34.586 133 83 2 324 455 2 131 1.28e-16 76.6
Msa0227470 MtrunA17_Chr1g0211531 25.085 295 210 7 163 452 243 531 1.61e-15 79.0
Msa0227470 MtrunA17_Chr2g0297521 32.941 85 57 0 257 341 1 85 1.04e-13 66.6
Msa0227470 MtrunA17_Chr1g0211511 25.352 284 183 11 163 434 20 286 1.12e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227470 AT3G18670.1 30.137 365 238 8 103 456 226 584 3.47e-47 172
Msa0227470 AT3G18670.2 31.935 310 204 5 148 456 336 639 1.78e-46 171
Msa0227470 AT5G04690.1 32.566 304 193 7 157 458 321 614 3.77e-45 167
Msa0227470 AT5G04690.3 32.566 304 193 7 157 458 341 634 3.96e-45 167
Msa0227470 AT5G04690.2 32.566 304 193 7 157 458 355 648 4.06e-45 167
Msa0227470 AT5G35810.1 32.372 312 198 6 150 453 23 329 1.06e-44 160
Msa0227470 AT5G04700.1 33.841 328 206 8 136 458 337 658 2.23e-43 162
Msa0227470 AT3G54065.1 36.612 183 109 1 251 426 8 190 2.02e-39 142
Msa0227470 AT5G04680.2 32.177 317 194 8 155 458 222 530 4.47e-37 143
Msa0227470 AT5G04680.3 32.177 317 194 8 155 458 331 639 5.96e-37 144
Msa0227470 AT5G04680.4 32.177 317 194 8 155 458 345 653 8.51e-37 144
Msa0227470 AT5G04680.1 32.177 317 194 8 155 458 374 682 1.08e-36 143
Msa0227470 AT5G04730.1 30.061 326 212 7 140 458 275 591 8.34e-36 140

Find 142 sgRNAs with CRISPR-Local

Find 546 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTAATTAGATTTCTATTT+TGG 0.124656 2_1:+78697455 Msa0227470:three_prime_UTR
GCAGGTTGTCCTTCGAAATT+TGG 0.162696 2_1:-78696837 None:intergenic
TTATCAATTTAGAGCCTTAA+TGG 0.188802 2_1:+78697408 Msa0227470:three_prime_UTR
GATTAGAGTCCCAAATAAAA+AGG 0.211133 2_1:+78687426 Msa0227470:five_prime_UTR
GCAGGCTGAATCGTAGAATT+AGG 0.234892 2_1:-78686900 None:intergenic
TGTTTACCTCTCACATTCTA+TGG 0.241176 2_1:+78697119 Msa0227470:CDS
AATTATTTAATTAGTTGATA+TGG 0.243103 2_1:+78697484 Msa0227470:three_prime_UTR
ATTTGCCCACATAATGATAT+TGG 0.261863 2_1:-78697359 None:intergenic
ATTTGATCACTAATCCATTA+AGG 0.270996 2_1:-78697422 None:intergenic
AACCCCAGGTGAAATCTTTA+AGG 0.271604 2_1:+78696671 Msa0227470:CDS
ATGTTCATTTCTTTCATTGC+TGG 0.288747 2_1:+78697029 Msa0227470:CDS
TTCTCTATATGTTCGTTGAT+TGG 0.306728 2_1:+78696870 Msa0227470:CDS
AGTGATCAAATTAAGTAATA+AGG 0.307382 2_1:+78697434 Msa0227470:three_prime_UTR
ACATCTTCATCTTCATTTGC+AGG 0.309830 2_1:-78686918 None:intergenic
AAGTGGCGTAGTTGAAATTA+TGG 0.312736 2_1:+78695377 Msa0227470:CDS
ATAGCAAGATTGAGATCATT+TGG 0.331887 2_1:-78687520 None:intergenic
CTTCTTTGTTGCTTCTATGA+TGG 0.336687 2_1:-78696644 None:intergenic
CTGTGCTTGCACGCCATAAA+AGG 0.343353 2_1:+78687470 Msa0227470:five_prime_UTR
CGTAGAATTAGGATTCATTT+CGG 0.350085 2_1:-78686889 None:intergenic
TGGATTGAAACTTATGAGTT+TGG 0.354909 2_1:+78697257 Msa0227470:three_prime_UTR
CATTGTTAGAGTTAGTTTCA+TGG 0.358694 2_1:-78695575 None:intergenic
ATAGAACAAGATACCATTCT+TGG 0.368304 2_1:-78697081 None:intergenic
AACACTGCTTGGAGGATATC+TGG 0.368356 2_1:+78695759 Msa0227470:CDS
TTGTTGAGGGGTTGTGGAAG+GGG 0.371458 2_1:+78695640 Msa0227470:CDS
AAATGTTTGTATTCACCATA+TGG 0.371774 2_1:+78693108 Msa0227470:exon
GATCAAGATATAAAGGAAAC+TGG 0.372934 2_1:-78697148 None:intergenic
TTGACAAGATCAAGATATAA+AGG 0.379053 2_1:-78697155 None:intergenic
CGCAAGTTGTTGAGGGGTTG+TGG 0.380881 2_1:+78695634 Msa0227470:CDS
CTTTGATTTCCTTCTCCCAC+TGG 0.387492 2_1:-78695297 None:intergenic
CATAGAACCAGGATTCATTT+CGG 0.397803 2_1:-78686847 None:intergenic
ATTTATTATGTTTAGAGTAC+TGG 0.399543 2_1:+78697305 Msa0227470:three_prime_UTR
TCCTCCTTAAAGATTTCACC+TGG 0.410908 2_1:-78696675 None:intergenic
TAGCAAGATTGAGATCATTT+GGG 0.422742 2_1:-78687519 None:intergenic
CTTCACCTTGCAGCATATAG+AGG 0.427598 2_1:+78687349 Msa0227470:five_prime_UTR
CTCTTGAAATGCTTGCTACT+AGG 0.435243 2_1:+78687843 Msa0227470:five_prime_UTR
CCTGATTCATCATTTCCTCC+AGG 0.439349 2_1:-78696810 None:intergenic
GTTGTTGAGGGGTTGTGGAA+GGG 0.442730 2_1:+78695639 Msa0227470:CDS
GGCGTCTCCTTTGCTACATC+AGG 0.443396 2_1:+78696780 Msa0227470:CDS
GTACCTTATGACTATCTAGA+TGG 0.447562 2_1:+78686939 Msa0227470:five_prime_UTR
AGATGCTGCCAAGTGTAAAA+TGG 0.450627 2_1:-78695718 None:intergenic
ATGTTTAGAGTACTGGTTGT+TGG 0.455404 2_1:+78697312 Msa0227470:three_prime_UTR
CTTCTATGATGGTAATGATC+TGG 0.456056 2_1:-78696633 None:intergenic
AGCTTAACACCCTTGATGCT+TGG 0.460764 2_1:-78697203 None:intergenic
CATAAATCAACAAGTTGATA+AGG 0.463848 2_1:+78695686 Msa0227470:CDS
CCTGGAGGAAATGATGAATC+AGG 0.466439 2_1:+78696810 Msa0227470:CDS
AGTTGTTGAGGGGTTGTGGA+AGG 0.466656 2_1:+78695638 Msa0227470:CDS
AATATTCCAATATCATTATG+TGG 0.467329 2_1:+78697353 Msa0227470:three_prime_UTR
AAGAGGAGTATCATCTCTTT+CGG 0.469914 2_1:-78687329 None:intergenic
ACCGAACATTTCTCTATGAA+TGG 0.471652 2_1:-78687575 None:intergenic
GCTACATCAGGCAGTGTCCC+TGG 0.477028 2_1:+78696792 Msa0227470:CDS
ACCATGTTCTCCGTGATCAA+AGG 0.483603 2_1:-78693788 None:intergenic
CCCTTTGATCACGGAGAACA+TGG 0.487030 2_1:+78693787 Msa0227470:CDS
CCACACATGTACGACTGATA+AGG 0.487600 2_1:-78693754 None:intergenic
TTAACACCCTTGATGCTTGG+TGG 0.487852 2_1:-78697200 None:intergenic
CGAGTTCCGCGAGTGGGTAA+TGG 0.492725 2_1:+78687126 Msa0227470:five_prime_UTR
CAAACTTAGGGGCAATAAAG+AGG 0.493684 2_1:+78693677 Msa0227470:intron
CCATGTTCTCCGTGATCAAA+GGG 0.493736 2_1:-78693787 None:intergenic
GTGGGTAATGGAAGACGATT+GGG 0.496127 2_1:+78687138 Msa0227470:five_prime_UTR
CTCCTTAAAGATTTCACCTG+GGG 0.497170 2_1:-78696673 None:intergenic
GCCATTCATAGAGAAATGTT+CGG 0.497959 2_1:+78687574 Msa0227470:five_prime_UTR
AGAGCTTAATTCAAAAGTAA+AGG 0.498132 2_1:+78695401 Msa0227470:CDS
TTTCATCACCAAGTAAAAGA+TGG 0.498695 2_1:+78693141 Msa0227470:CDS
TTCGAGAAGTGAGTATAGAA+AGG 0.498713 2_1:-78696926 None:intergenic
GAACCTTCCGAAATGAATCC+TGG 0.500850 2_1:+78686840 Msa0227470:five_prime_UTR
AGGCCGAAAAGAAGTTTCAA+TGG 0.501753 2_1:-78696978 None:intergenic
ACAGATAAATATACCAAGAA+TGG 0.504865 2_1:+78697068 Msa0227470:CDS
GTTGTAGCAGCACTCGTCGC+AGG 0.505518 2_1:+78696759 Msa0227470:CDS
TACAATGTTGATGAAAAGAA+AGG 0.506004 2_1:+78693023 Msa0227470:five_prime_UTR
CGCTCTATGGAGGACGAACA+TGG 0.507160 2_1:+78687812 Msa0227470:five_prime_UTR
AGAAATGAACATGGCAACAA+TGG 0.515982 2_1:-78697018 None:intergenic
ATTGCATCAGAATTATCAAA+TGG 0.517462 2_1:+78695465 Msa0227470:CDS
CTGATTCATCATTTCCTCCA+GGG 0.517799 2_1:-78696809 None:intergenic
AGTGGGTAATGGAAGACGAT+TGG 0.517975 2_1:+78687137 Msa0227470:five_prime_UTR
ACACCCTTGATGCTTGGTGG+TGG 0.521165 2_1:-78697197 None:intergenic
TGAAAACAGGATTTGCCATA+TGG 0.523649 2_1:-78693123 None:intergenic
ATGAATGGCAACGTGAAGAA+TGG 0.524484 2_1:-78687560 None:intergenic
AACACAACGAAAACACTGCT+TGG 0.527042 2_1:+78695748 Msa0227470:CDS
CACAACCCCTCAACAACTTG+CGG 0.534637 2_1:-78695633 None:intergenic
AGACAACCGCAAGTTGTTGA+GGG 0.537910 2_1:+78695627 Msa0227470:CDS
ATAGAGAATACTTCAAATGC+AGG 0.545958 2_1:-78696855 None:intergenic
AGTATGTGTAAATGTATCGT+TGG 0.546925 2_1:+78687379 Msa0227470:five_prime_UTR
CATCATAGAAGCAACAAAGA+AGG 0.547820 2_1:+78696645 Msa0227470:CDS
GAATGTGAGAGGTAAACAAA+TGG 0.549126 2_1:-78697114 None:intergenic
GAACCAGGATTCATTTCGGA+AGG 0.549262 2_1:-78686843 None:intergenic
TAGACAACCGCAAGTTGTTG+AGG 0.551855 2_1:+78695626 Msa0227470:CDS
TATCAGTCGTACATGTGTGG+TGG 0.552476 2_1:+78693757 Msa0227470:CDS
CTATATGCTGCAAGGTGAAG+AGG 0.554034 2_1:-78687346 None:intergenic
GTAAAGGCATGTGACAAGAA+AGG 0.554291 2_1:+78695417 Msa0227470:CDS
ATGGTCTACTCAGTCATGGT+GGG 0.554564 2_1:+78693160 Msa0227470:CDS
AAATCAAATCCAGTGGGAGA+AGG 0.558115 2_1:+78695288 Msa0227470:CDS
GGTGCCACCACCAAGCATCA+AGG 0.560692 2_1:+78697193 Msa0227470:CDS
AGCTGCCGAGTTCCGCGAGT+GGG 0.561779 2_1:+78687120 Msa0227470:intron
GGGAGAAGGAAATCAAAGAA+TGG 0.562490 2_1:+78695302 Msa0227470:CDS
ATACCATCTAGATAGTCATA+AGG 0.565626 2_1:-78686942 None:intergenic
ACAACGAAAACACTGCTTGG+AGG 0.565861 2_1:+78695751 Msa0227470:CDS
TATTTGCTTGCAGCAAAACA+TGG 0.566438 2_1:+78695504 Msa0227470:CDS
ACTCAACATGAGTGGATGTC+CGG 0.566795 2_1:+78697507 Msa0227470:three_prime_UTR
CCTCCTTAAAGATTTCACCT+GGG 0.568420 2_1:-78696674 None:intergenic
ATCAGTCGTACATGTGTGGT+GGG 0.568916 2_1:+78693758 Msa0227470:CDS
AAACTTAGGGGCAATAAAGA+GGG 0.574713 2_1:+78693678 Msa0227470:intron
GGGATTGATCCCTTTGATCA+CGG 0.574955 2_1:+78693778 Msa0227470:CDS
TTCATTTCGGAATCATCTTG+AGG 0.580962 2_1:-78686876 None:intergenic
AAATTCAAGACTCAATATGA+AGG 0.580969 2_1:+78693838 Msa0227470:CDS
CATTACCCACTCGCGGAACT+CGG 0.582026 2_1:-78687125 None:intergenic
TTGTTGATTTATGCTGTGAA+AGG 0.582708 2_1:-78695676 None:intergenic
AAATTGATGTAGGTAAAGAA+AGG 0.583759 2_1:-78687494 None:intergenic
GTGCCACCACCAAGCATCAA+GGG 0.586554 2_1:+78697194 Msa0227470:CDS
GACACTGCCTGATGTAGCAA+AGG 0.588124 2_1:-78696787 None:intergenic
TCAAGGGTGTTAAGCTGTAG+AGG 0.590773 2_1:+78697210 Msa0227470:CDS
TGAATCCTCTATATGCTGCA+AGG 0.593278 2_1:-78687354 None:intergenic
GTGGGACATCAAGTGGTACA+AGG 0.594742 2_1:+78695800 Msa0227470:CDS
CAATCTTGCTATGAATAACG+AGG 0.598611 2_1:+78687531 Msa0227470:five_prime_UTR
GATGTCCCACATCATTTGCA+TGG 0.598842 2_1:-78695787 None:intergenic
TGTCAAAGTTACGTGGAGGA+AGG 0.603346 2_1:+78697172 Msa0227470:CDS
CTAGTAGCAAGCATTTCAAG+AGG 0.607759 2_1:-78687842 None:intergenic
ATATTCCAATATCATTATGT+GGG 0.614446 2_1:+78697354 Msa0227470:three_prime_UTR
AGAATTATCAAATGGCACAA+AGG 0.614974 2_1:+78695473 Msa0227470:CDS
TCAGGAAAACCAAATTTCGA+AGG 0.615378 2_1:+78696828 Msa0227470:CDS
GATGGTCTACTCAGTCATGG+TGG 0.615693 2_1:+78693159 Msa0227470:CDS
AAAGATGGTCTACTCAGTCA+TGG 0.616140 2_1:+78693156 Msa0227470:CDS
TGAGGCTGAATCATAGAACC+AGG 0.620158 2_1:-78686858 None:intergenic
GTAAAGCATAATGATCAAAG+TGG 0.624361 2_1:+78687292 Msa0227470:five_prime_UTR
TTCTAGATAAAAGCATTGAG+TGG 0.628989 2_1:+78696709 Msa0227470:CDS
GTGCAGCCATGCAAATGATG+TGG 0.634297 2_1:+78695781 Msa0227470:CDS
GTTAAGAAGAAGCACAAATG+TGG 0.639302 2_1:+78693700 Msa0227470:CDS
TGGCTACGAAGAGAGAACTT+AGG 0.639379 2_1:-78696998 None:intergenic
CCTTATCAGTCGTACATGTG+TGG 0.641337 2_1:+78693754 Msa0227470:CDS
GACAACCGCAAGTTGTTGAG+GGG 0.642150 2_1:+78695628 Msa0227470:CDS
ATCTTGTCAAAGTTACGTGG+AGG 0.648519 2_1:+78697168 Msa0227470:CDS
TTGATCTTGTCAAAGTTACG+TGG 0.655731 2_1:+78697165 Msa0227470:CDS
CCCAGGTGAAATCTTTAAGG+AGG 0.655968 2_1:+78696674 Msa0227470:CDS
TGATATGGACTCAACATGAG+TGG 0.668128 2_1:+78697499 Msa0227470:three_prime_UTR
ACAACTCCATAGAATGTGAG+AGG 0.669785 2_1:-78697125 None:intergenic
TGCAGCCATGCAAATGATGT+GGG 0.674334 2_1:+78695782 Msa0227470:CDS
AAATGATGTGGGACATCAAG+TGG 0.684085 2_1:+78695793 Msa0227470:CDS
TAGCTGCCGAGTTCCGCGAG+TGG 0.684675 2_1:+78687119 Msa0227470:intron
TGGTCTACTCAGTCATGGTG+GGG 0.685565 2_1:+78693161 Msa0227470:CDS
CGTCTTCCATTACCCACTCG+CGG 0.694968 2_1:-78687132 None:intergenic
AAGAGGAACAGCATTACATG+TGG 0.700334 2_1:+78687219 Msa0227470:five_prime_UTR
AGCAATGAAAGAAATGAACA+TGG 0.705741 2_1:-78697027 None:intergenic
AATCTTGCTATGAATAACGA+GGG 0.709353 2_1:+78687532 Msa0227470:five_prime_UTR
ACATCAGGCAGTGTCCCTGG+AGG 0.720913 2_1:+78696795 Msa0227470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATGAAAAATAAGAATA+AGG - chr2_1:78686815-78686834 None:intergenic 10.0%
!!! AATTTTCACAAATTATTTAA+AGG + chr2_1:78688240-78688259 Msa0227470:intron 10.0%
!!! ATTTTCACAAATTATTTAAA+GGG + chr2_1:78688241-78688260 Msa0227470:intron 10.0%
!! AGAATTGAAAAAAAAAAAAA+AGG - chr2_1:78690266-78690285 None:intergenic 10.0%
!!! TACAATTTAATTTTAGTTTT+TGG - chr2_1:78691186-78691205 None:intergenic 10.0%
!! AAAACTAAAATTAAATTGTA+TGG + chr2_1:78691186-78691205 Msa0227470:intron 10.0%
!! AGTAAAAAATTGAATATTAT+TGG + chr2_1:78692654-78692673 Msa0227470:intron 10.0%
!! ATTAAATCATGTAAAATTAA+AGG - chr2_1:78693208-78693227 None:intergenic 10.0%
!!! AAGAACAAAAAAAATATTTT+CGG + chr2_1:78693865-78693884 Msa0227470:intron 10.0%
!! TATATATTACTAAAACAATA+TGG + chr2_1:78694136-78694155 Msa0227470:intron 10.0%
!!! TTTTTATTTTGAATGTTTTA+TGG + chr2_1:78694525-78694544 Msa0227470:intron 10.0%
!! TTTAAAAAAAAAAACACTAA+TGG + chr2_1:78694705-78694724 Msa0227470:intron 10.0%
!! TTAAAAAAAAAAACACTAAT+GGG + chr2_1:78694706-78694725 Msa0227470:intron 10.0%
!!! TTTTTTTTTCTTTTTGTTTA+AGG + chr2_1:78696064-78696083 Msa0227470:intron 10.0%
!!! AATTATTTAATTAGTTGATA+TGG + chr2_1:78697484-78697503 Msa0227470:three_prime_UTR 10.0%
!! TAATTAATCACAAAAAATGT+CGG - chr2_1:78686994-78687013 None:intergenic 15.0%
!!! TTTTCACAAGATAAAAATAA+AGG + chr2_1:78687195-78687214 Msa0227470:five_prime_UTR 15.0%
!! TTTCACAAGATAAAAATAAA+GGG + chr2_1:78687196-78687215 Msa0227470:five_prime_UTR 15.0%
!!! TTTAGATTAAATTTTACCAT+AGG - chr2_1:78687682-78687701 None:intergenic 15.0%
!!! GGTTCTTAAATTTTAATTTT+TGG + chr2_1:78688411-78688430 Msa0227470:intron 15.0%
!!! TTTTGTTAAAATAATTTCGT+AGG + chr2_1:78688922-78688941 Msa0227470:intron 15.0%
!! TTTGTTAAAATAATTTCGTA+GGG + chr2_1:78688923-78688942 Msa0227470:intron 15.0%
!!! ATTTTGATTTAGAAAATCAT+TGG - chr2_1:78688980-78688999 None:intergenic 15.0%
!!! TTATTGACTTTTAAAAATCA+AGG + chr2_1:78689004-78689023 Msa0227470:intron 15.0%
!!! ATTTGAGTATTTTTAAGAAA+AGG + chr2_1:78689405-78689424 Msa0227470:intron 15.0%
!!! TTATTCCTAAAATTTAGTTT+GGG - chr2_1:78689611-78689630 None:intergenic 15.0%
!! TTTATTCCTAAAATTTAGTT+TGG - chr2_1:78689612-78689631 None:intergenic 15.0%
!!! TGTTCTTTATAAAATTTTGT+TGG + chr2_1:78691132-78691151 Msa0227470:intron 15.0%
!!! TTATAAAATTTTGTTGGTAA+AGG + chr2_1:78691138-78691157 Msa0227470:intron 15.0%
!! GTAATCAAATATTATAGAAA+AGG + chr2_1:78691411-78691430 Msa0227470:intron 15.0%
!!! ATTACTATCATTTTTCATTT+TGG - chr2_1:78691461-78691480 None:intergenic 15.0%
!! ATAATGAGAAAATAAATGTT+TGG + chr2_1:78691836-78691855 Msa0227470:intron 15.0%
!! AAATCAAAATCAAAGTTAAT+TGG - chr2_1:78692331-78692350 None:intergenic 15.0%
!!! AACTACATTTAATTTTCATA+CGG + chr2_1:78692441-78692460 Msa0227470:intron 15.0%
!! AAATTATTCAATTTATAGCA+CGG + chr2_1:78692485-78692504 Msa0227470:intron 15.0%
!! AACAAAATAAAAAGGAATTA+AGG - chr2_1:78692583-78692602 None:intergenic 15.0%
!! GCATATAAAACAAAATAAAA+AGG - chr2_1:78692591-78692610 None:intergenic 15.0%
!!! TGCTAAATTGTTTAAAATTA+AGG - chr2_1:78692899-78692918 None:intergenic 15.0%
!!! ATTTTACATGATTTAATTTG+TGG + chr2_1:78693211-78693230 Msa0227470:intron 15.0%
!!! TTAATTAATTTTGCAAACTT+AGG + chr2_1:78693664-78693683 Msa0227470:intron 15.0%
!!! TAATTAATTTTGCAAACTTA+GGG + chr2_1:78693665-78693684 Msa0227470:intron 15.0%
!!! GATTATTTTCATATTTTTAG+TGG + chr2_1:78694589-78694608 Msa0227470:intron 15.0%
!! GTATCCTTAAAAAAAATTAA+CGG + chr2_1:78694891-78694910 Msa0227470:intron 15.0%
!! AAAAAAAATGTTTACAATAC+TGG - chr2_1:78695864-78695883 None:intergenic 15.0%
!!! AATAACTTTTTTTTTTGACA+AGG + chr2_1:78695942-78695961 Msa0227470:intron 15.0%
!!! GATATATACAGTAAGAATTT+TGG - chr2_1:78687723-78687742 None:intergenic 20.0%
!! TATCAAAAAGTGATTGAAAA+AGG + chr2_1:78688507-78688526 Msa0227470:intron 20.0%
!! TTATAGCTAAGTAAGTTTAA+GGG + chr2_1:78688591-78688610 Msa0227470:intron 20.0%
!!! TTTTAAAAATCAAGGTCTTT+TGG + chr2_1:78689012-78689031 Msa0227470:intron 20.0%
!!! TTTAAAAATCAAGGTCTTTT+GGG + chr2_1:78689013-78689032 Msa0227470:intron 20.0%
!!! TAAATCTTAGAATTTGAGTT+GGG - chr2_1:78689436-78689455 None:intergenic 20.0%
!! ATAAATCTTAGAATTTGAGT+TGG - chr2_1:78689437-78689456 None:intergenic 20.0%
!! TTAAGATTTCCACATTAAAT+TGG + chr2_1:78689550-78689569 Msa0227470:intron 20.0%
!! AAATCATATCCAATTTAATG+TGG - chr2_1:78689562-78689581 None:intergenic 20.0%
!!! ATTTACCCAAACTAAATTTT+AGG + chr2_1:78689603-78689622 Msa0227470:intron 20.0%
!! TTGATGAAAGGTTATTTATA+GGG + chr2_1:78689755-78689774 Msa0227470:intron 20.0%
!! TCTTTGTCAAAAAAAAATCA+GGG - chr2_1:78689863-78689882 None:intergenic 20.0%
!! AATACAAGTAACAAAAATCA+GGG - chr2_1:78689888-78689907 None:intergenic 20.0%
!! TAATACAAGTAACAAAAATC+AGG - chr2_1:78689889-78689908 None:intergenic 20.0%
!! TCTGACTAATAAAACTAAAA+TGG + chr2_1:78690506-78690525 Msa0227470:intron 20.0%
!! ATTATATGGAGATTAAAATG+AGG - chr2_1:78690677-78690696 None:intergenic 20.0%
!! CAAAAGAAAAGTTAATAAAG+AGG + chr2_1:78691001-78691020 Msa0227470:intron 20.0%
!!! TATTACTGGTTAACTATATA+TGG - chr2_1:78691814-78691833 None:intergenic 20.0%
!! ATATATAGTTAACCAGTAAT+AGG + chr2_1:78691813-78691832 Msa0227470:intron 20.0%
!! ATCATCATGCATAATATTAT+TGG + chr2_1:78692125-78692144 Msa0227470:intron 20.0%
!!! TTGATTTTGATTTTAGCAAA+TGG + chr2_1:78692338-78692357 Msa0227470:intron 20.0%
!! AATTATTCAATTTATAGCAC+GGG + chr2_1:78692486-78692505 Msa0227470:intron 20.0%
!! TAAATATTCTGTTCGAAATT+TGG + chr2_1:78692546-78692565 Msa0227470:intron 20.0%
!! AAATATTCTGTTCGAAATTT+GGG + chr2_1:78692547-78692566 Msa0227470:intron 20.0%
!!! TTGTTTTTGTTGTTGTTAAT+AGG - chr2_1:78692814-78692833 None:intergenic 20.0%
!! GATGTGATCTATTAATTTAA+TGG + chr2_1:78693368-78693387 Msa0227470:intron 20.0%
!!! AATTAATTTTGCAAACTTAG+GGG + chr2_1:78693666-78693685 Msa0227470:intron 20.0%
!! ACTAAAAAATACATGTCAAA+CGG - chr2_1:78694245-78694264 None:intergenic 20.0%
!! GACTAACTATTAAAAAAATG+AGG - chr2_1:78694487-78694506 None:intergenic 20.0%
!!! CTTTCCGTTAATTTTTTTTA+AGG - chr2_1:78694898-78694917 None:intergenic 20.0%
!! AAAAAAAATTGTCACATGTA+AGG - chr2_1:78695067-78695086 None:intergenic 20.0%
!!! GACTAGTATTTTAGTTAATT+TGG + chr2_1:78695837-78695856 Msa0227470:intron 20.0%
!! GAATTAAGTTAAACAATCTA+TGG + chr2_1:78695981-78696000 Msa0227470:intron 20.0%
!! GTATTTCCTATTAATTAATG+TGG + chr2_1:78696096-78696115 Msa0227470:intron 20.0%
!!! GGTTGAATTTTATTTATTGA+TGG - chr2_1:78696181-78696200 None:intergenic 20.0%
!!! GTTTTTTTTTTTTCATGAAG+AGG - chr2_1:78696289-78696308 None:intergenic 20.0%
!!! TATTTTATTGTATTTCTGTG+TGG + chr2_1:78697237-78697256 Msa0227470:three_prime_UTR 20.0%
!!! ATTTATTATGTTTAGAGTAC+TGG + chr2_1:78697305-78697324 Msa0227470:three_prime_UTR 20.0%
!! AATATTCCAATATCATTATG+TGG + chr2_1:78697353-78697372 Msa0227470:three_prime_UTR 20.0%
!! ATATTCCAATATCATTATGT+GGG + chr2_1:78697354-78697373 Msa0227470:three_prime_UTR 20.0%
!! AGTGATCAAATTAAGTAATA+AGG + chr2_1:78697434-78697453 Msa0227470:three_prime_UTR 20.0%
! AGTTATTGTCACAAACAAAT+TGG - chr2_1:78687086-78687105 None:intergenic 25.0%
! AAGATAAAAATAAAGGGAAG+AGG + chr2_1:78687202-78687221 Msa0227470:five_prime_UTR 25.0%
! AAATGTATCGTTGGAAAAAA+TGG + chr2_1:78687388-78687407 Msa0227470:five_prime_UTR 25.0%
! ATTAGAGTCCCAAATAAAAA+GGG + chr2_1:78687427-78687446 Msa0227470:five_prime_UTR 25.0%
! AAATTGATGTAGGTAAAGAA+AGG - chr2_1:78687497-78687516 None:intergenic 25.0%
! TGATTTAAGAAATTCTCCTA+TGG + chr2_1:78687663-78687682 Msa0227470:intron 25.0%
! AAGACACATAGATTATTAAC+AGG - chr2_1:78687745-78687764 None:intergenic 25.0%
!!! TAATTCCTTTTTTTGAGAGA+TGG + chr2_1:78688113-78688132 Msa0227470:intron 25.0%
! TTATATCCACTTGGTTAATT+GGG - chr2_1:78688156-78688175 None:intergenic 25.0%
! TTTATATCCACTTGGTTAAT+TGG - chr2_1:78688157-78688176 None:intergenic 25.0%
! AGAAAACTAAGACTCAAATA+TGG - chr2_1:78688297-78688316 None:intergenic 25.0%
!!! TTTTCTATGTAAGTACTGAT+TGG + chr2_1:78688311-78688330 Msa0227470:intron 25.0%
!!! TTTCTATGTAAGTACTGATT+GGG + chr2_1:78688312-78688331 Msa0227470:intron 25.0%
! GATTTAGATTAGAACAATCA+TGG + chr2_1:78688440-78688459 Msa0227470:intron 25.0%
! TGAAATTTAAGAACCACATA+AGG - chr2_1:78688475-78688494 None:intergenic 25.0%
!!! TCACTTTTTGATATTCACAA+TGG - chr2_1:78688500-78688519 None:intergenic 25.0%
!!! ATCTTTCTTCTTTTTTCCAT+TGG + chr2_1:78688535-78688554 Msa0227470:intron 25.0%
! GTTATAGCTAAGTAAGTTTA+AGG + chr2_1:78688590-78688609 Msa0227470:intron 25.0%
! TAAGTAAGTTTAAGGGAATT+TGG + chr2_1:78688598-78688617 Msa0227470:intron 25.0%
! CCAAAAAAACAAATTACTGA+GGG - chr2_1:78688784-78688803 None:intergenic 25.0%
! ACCAAAAAAACAAATTACTG+AGG - chr2_1:78688785-78688804 None:intergenic 25.0%
!!! TAAGAATTTGTTGGTTATGA+AGG + chr2_1:78688856-78688875 Msa0227470:intron 25.0%
! AAGAATTTAGTCACAAGATT+TGG + chr2_1:78689057-78689076 Msa0227470:intron 25.0%
! AAAACAAGAAAATGCTTGAA+TGG - chr2_1:78689192-78689211 None:intergenic 25.0%
! AACTCTTATCTCATCTAATA+TGG - chr2_1:78689341-78689360 None:intergenic 25.0%
!!! AAATCTTAGAATTTGAGTTG+GGG - chr2_1:78689435-78689454 None:intergenic 25.0%
!! TAATAGTGACATTTTGTGTA+AGG - chr2_1:78689672-78689691 None:intergenic 25.0%
! TACACAAAATGTCACTATTA+TGG + chr2_1:78689672-78689691 Msa0227470:intron 25.0%
! CTTTCATCAACAAGTAAATA+AGG - chr2_1:78689745-78689764 None:intergenic 25.0%
!! CTTATTTACTTGTTGATGAA+AGG + chr2_1:78689743-78689762 Msa0227470:intron 25.0%
!! GTTGATGAAAGGTTATTTAT+AGG + chr2_1:78689754-78689773 Msa0227470:intron 25.0%
! GTCTTTGTCAAAAAAAAATC+AGG - chr2_1:78689864-78689883 None:intergenic 25.0%
!! TTTGTTACTTGTATTATTCG+AGG + chr2_1:78689893-78689912 Msa0227470:intron 25.0%
!! TTGTTACTTGTATTATTCGA+GGG + chr2_1:78689894-78689913 Msa0227470:intron 25.0%
!!! ATTTGTTCTCATGGATTTTT+TGG + chr2_1:78689971-78689990 Msa0227470:intron 25.0%
! TTGAAAATGATTCTAAGCAA+AGG + chr2_1:78690095-78690114 Msa0227470:intron 25.0%
!! TTAGGTATGAGTTTTACATA+TGG + chr2_1:78690380-78690399 Msa0227470:intron 25.0%
! GACTAATAAAACTAAAATGG+TGG + chr2_1:78690509-78690528 Msa0227470:intron 25.0%
! TTAATCTCCATATAATCTTC+AGG + chr2_1:78690681-78690700 Msa0227470:intron 25.0%
!! ATTTGGTATTGAAATAGTTG+TGG - chr2_1:78690750-78690769 None:intergenic 25.0%
! TACTTTGTAATAACCTCATA+CGG + chr2_1:78690873-78690892 Msa0227470:intron 25.0%
! AATAGAAGATGAATTACATG+TGG - chr2_1:78690915-78690934 None:intergenic 25.0%
! ACTATCTAGTAGAAACATAT+GGG - chr2_1:78690964-78690983 None:intergenic 25.0%
! TACTATCTAGTAGAAACATA+TGG - chr2_1:78690965-78690984 None:intergenic 25.0%
!! CTTGTCAAATTCATGTATTT+TGG + chr2_1:78691042-78691061 Msa0227470:intron 25.0%
!!! ACCTTTATTTTGACTACTTT+TGG - chr2_1:78691108-78691127 None:intergenic 25.0%
! AATTCATTGAAAACTTACCT+TGG - chr2_1:78691230-78691249 None:intergenic 25.0%
!!! CATTTTTCATTTTGGTTTGA+TGG - chr2_1:78691453-78691472 None:intergenic 25.0%
! ATTACTCATAAACATTTGAG+CGG + chr2_1:78691498-78691517 Msa0227470:intron 25.0%
! TATTGGTATTGTCATAGATT+AGG - chr2_1:78691571-78691590 None:intergenic 25.0%
! TGTAATGTTGTCAAATGTAT+AGG - chr2_1:78691737-78691756 None:intergenic 25.0%
!! TTTTCTCATTATCCTATTAC+TGG - chr2_1:78691828-78691847 None:intergenic 25.0%
!!! TTGGATGTTTTGTTCAAATT+AGG + chr2_1:78691855-78691874 Msa0227470:intron 25.0%
! AAATTAATTTAATCCACCGA+GGG - chr2_1:78691917-78691936 None:intergenic 25.0%
!! TAATATTATGCATGATGATG+TGG - chr2_1:78692124-78692143 None:intergenic 25.0%
! TTATGAAGAGTCAAATTTAG+TGG + chr2_1:78692711-78692730 Msa0227470:intron 25.0%
!!! AATTTACTACTTTTTCCAAC+AGG - chr2_1:78692783-78692802 None:intergenic 25.0%
! TCTCTGCAGTATATATTAAT+AGG - chr2_1:78692971-78692990 None:intergenic 25.0%
!! TACAATGTTGATGAAAAGAA+AGG + chr2_1:78693023-78693042 Msa0227470:five_prime_UTR 25.0%
! AAATGTTTGTATTCACCATA+TGG + chr2_1:78693108-78693127 Msa0227470:exon 25.0%
! GTTATTGTCATTCAATCAAT+TGG + chr2_1:78693475-78693494 Msa0227470:intron 25.0%
! TTCTCACTTATTCACTTTAA+AGG - chr2_1:78693513-78693532 None:intergenic 25.0%
! AAATTCAAGACTCAATATGA+AGG + chr2_1:78693838-78693857 Msa0227470:CDS 25.0%
!!! TACATTTTTTTTAGCGATGA+AGG - chr2_1:78694102-78694121 None:intergenic 25.0%
! CTAAAAAATACATGTCAAAC+GGG - chr2_1:78694244-78694263 None:intergenic 25.0%
!!! TTGACATGTATTTTTTAGTG+AGG + chr2_1:78694246-78694265 Msa0227470:intron 25.0%
!! TTTTATTATATCAACCCAAC+AGG - chr2_1:78694352-78694371 None:intergenic 25.0%
! GTCAATAGTTCATCTAAATA+GGG - chr2_1:78694820-78694839 None:intergenic 25.0%
! TGTCAATAGTTCATCTAAAT+AGG - chr2_1:78694821-78694840 None:intergenic 25.0%
! TATTTAGATGAACTATTGAC+AGG + chr2_1:78694820-78694839 Msa0227470:intron 25.0%
!!! TTTTAAGGATACTCTTTCTA+GGG - chr2_1:78694883-78694902 None:intergenic 25.0%
!!! TTTTTAAGGATACTCTTTCT+AGG - chr2_1:78694884-78694903 None:intergenic 25.0%
!!! CATGTGACAATTTTTTTTAG+AGG + chr2_1:78695069-78695088 Msa0227470:intron 25.0%
! AAAAAAGAAATCAAATCCAG+TGG + chr2_1:78695281-78695300 Msa0227470:CDS 25.0%
! AAAAAGAAATCAAATCCAGT+GGG + chr2_1:78695282-78695301 Msa0227470:CDS 25.0%
!! TGAAAAAGATACGACATTTT+TGG + chr2_1:78695344-78695363 Msa0227470:CDS 25.0%
! AGAGCTTAATTCAAAAGTAA+AGG + chr2_1:78695401-78695420 Msa0227470:CDS 25.0%
! ATTGCATCAGAATTATCAAA+TGG + chr2_1:78695465-78695484 Msa0227470:CDS 25.0%
!!! CATAAATCAACAAGTTGATA+AGG + chr2_1:78695686-78695705 Msa0227470:CDS 25.0%
!!! TTTCTTTTTGTTTAAGGAAC+TGG + chr2_1:78696070-78696089 Msa0227470:intron 25.0%
!! TAGAATGACTACGTATTTTA+GGG - chr2_1:78696202-78696221 None:intergenic 25.0%
!! ATAGAATGACTACGTATTTT+AGG - chr2_1:78696203-78696222 None:intergenic 25.0%
!!! CTGTTTTAACTATATGTGAA+TGG + chr2_1:78696582-78696601 Msa0227470:intron 25.0%
! ACAGATAAATATACCAAGAA+TGG + chr2_1:78697068-78697087 Msa0227470:CDS 25.0%
! TTGACAAGATCAAGATATAA+AGG - chr2_1:78697158-78697177 None:intergenic 25.0%
!! TTATCAATTTAGAGCCTTAA+TGG + chr2_1:78697408-78697427 Msa0227470:three_prime_UTR 25.0%
! ATTTGATCACTAATCCATTA+AGG - chr2_1:78697425-78697444 None:intergenic 25.0%
!! GGCTAATTAGATTTCTATTT+TGG + chr2_1:78697455-78697474 Msa0227470:three_prime_UTR 25.0%
CGTAGAATTAGGATTCATTT+CGG - chr2_1:78686892-78686911 None:intergenic 30.0%
ATACCATCTAGATAGTCATA+AGG - chr2_1:78686945-78686964 None:intergenic 30.0%
GTAAAGCATAATGATCAAAG+TGG + chr2_1:78687292-78687311 Msa0227470:five_prime_UTR 30.0%
AGTATGTGTAAATGTATCGT+TGG + chr2_1:78687379-78687398 Msa0227470:five_prime_UTR 30.0%
GATTAGAGTCCCAAATAAAA+AGG + chr2_1:78687426-78687445 Msa0227470:five_prime_UTR 30.0%
!! GTGTTTCTCCCTTTTTATTT+GGG - chr2_1:78687438-78687457 None:intergenic 30.0%
CATTTGGGAAAAATTGATGT+AGG - chr2_1:78687507-78687526 None:intergenic 30.0%
TAGCAAGATTGAGATCATTT+GGG - chr2_1:78687522-78687541 None:intergenic 30.0%
ATAGCAAGATTGAGATCATT+TGG - chr2_1:78687523-78687542 None:intergenic 30.0%
! AATCTTGCTATGAATAACGA+GGG + chr2_1:78687532-78687551 Msa0227470:five_prime_UTR 30.0%
ATTATATTTGCCATACCTGT+TGG - chr2_1:78687770-78687789 None:intergenic 30.0%
GTAGTAAAAATCAGCTATCA+TGG + chr2_1:78687882-78687901 Msa0227470:five_prime_UTR 30.0%
CTAGTTTATCGCGTTATTAT+AGG - chr2_1:78688070-78688089 None:intergenic 30.0%
AACCAAGTGGATATAAATTG+TGG + chr2_1:78688160-78688179 Msa0227470:intron 30.0%
TACCACAATTTATATCCACT+TGG - chr2_1:78688165-78688184 None:intergenic 30.0%
! TAGATAATGTATTGGTATGG+CGG - chr2_1:78688270-78688289 None:intergenic 30.0%
AACTAAGACTCAAATATGGT+GGG - chr2_1:78688293-78688312 None:intergenic 30.0%
AAACTAAGACTCAAATATGG+TGG - chr2_1:78688294-78688313 None:intergenic 30.0%
TCATTAGATACGAAGTAGAT+TGG + chr2_1:78688381-78688400 Msa0227470:intron 30.0%
CATTAGATACGAAGTAGATT+GGG + chr2_1:78688382-78688401 Msa0227470:intron 30.0%
!!! TTTTTTCCATTGGTTGTTGA+AGG + chr2_1:78688545-78688564 Msa0227470:intron 30.0%
TTTGAGAGGGAAATTAGTAA+CGG + chr2_1:78688671-78688690 Msa0227470:intron 30.0%
!!! CCCTCAGTAATTTGTTTTTT+TGG + chr2_1:78688781-78688800 Msa0227470:intron 30.0%
GTAGTGCTAATACATTATGT+TGG + chr2_1:78688803-78688822 Msa0227470:intron 30.0%
CTTTCGTATTGTAGTAGTTA+GGG + chr2_1:78688832-78688851 Msa0227470:intron 30.0%
!! TTATGAAGGTTGTTTTCATG+TGG + chr2_1:78688870-78688889 Msa0227470:intron 30.0%
! TTGAATGGTCACAAGATTTT+GGG - chr2_1:78689177-78689196 None:intergenic 30.0%
ATGAGATAAGAGTTGAACAT+GGG + chr2_1:78689347-78689366 Msa0227470:intron 30.0%
AACCTAGATGTTAGACAATT+TGG + chr2_1:78689711-78689730 Msa0227470:intron 30.0%
AACCAAATTGTCTAACATCT+AGG - chr2_1:78689716-78689735 None:intergenic 30.0%
! AAAGGGAGGAATGAAATTTT+TGG + chr2_1:78689926-78689945 Msa0227470:intron 30.0%
! CTTCTAGAAATTTGTTCTCA+TGG + chr2_1:78689962-78689981 Msa0227470:intron 30.0%
!!! ATGGATTTTTTGGTTCATCT+AGG + chr2_1:78689981-78690000 Msa0227470:intron 30.0%
! GAATGTGCGTTATCTTTTTA+AGG + chr2_1:78690011-78690030 Msa0227470:intron 30.0%
AAATGTTAACATGTGACATC+AGG + chr2_1:78690147-78690166 Msa0227470:intron 30.0%
AATGTTAACATGTGACATCA+GGG + chr2_1:78690148-78690167 Msa0227470:intron 30.0%
! TGTCATTTGAACACAAGTTA+AGG - chr2_1:78690299-78690318 None:intergenic 30.0%
AAACTCATACCTAAAAAGAG+AGG - chr2_1:78690374-78690393 None:intergenic 30.0%
! AGTTCTTTTGGATAGGAATT+TGG - chr2_1:78690767-78690786 None:intergenic 30.0%
GTGCTTTATAATTCAGATCT+AGG + chr2_1:78690804-78690823 Msa0227470:intron 30.0%
GCCAAAAGTAGTCAAAATAA+AGG + chr2_1:78691104-78691123 Msa0227470:intron 30.0%
TAAACATTACATAACGACCA+TGG - chr2_1:78691271-78691290 None:intergenic 30.0%
! TAGATTAGGTCTAAAGTTGA+TGG - chr2_1:78691557-78691576 None:intergenic 30.0%
AATAGTGCAACAATGTCAAA+GGG + chr2_1:78691587-78691606 Msa0227470:intron 30.0%
! AGATTTTGTTAGTATACACG+TGG - chr2_1:78691673-78691692 None:intergenic 30.0%
TGTTGTCAAATGTATAGGTT+TGG - chr2_1:78691732-78691751 None:intergenic 30.0%
ATATGGTAGGATGTTGTATT+TGG - chr2_1:78691797-78691816 None:intergenic 30.0%
ACTGGTTAACTATATATGGT+AGG - chr2_1:78691810-78691829 None:intergenic 30.0%
AATTAATTTAATCCACCGAG+GGG - chr2_1:78691916-78691935 None:intergenic 30.0%
CAAATTAATTTAATCCACCG+AGG - chr2_1:78691918-78691937 None:intergenic 30.0%
GTCCAAGTAACTCTAAATAA+AGG + chr2_1:78692002-78692021 Msa0227470:intron 30.0%
! CTCCTTTATTTAGAGTTACT+TGG - chr2_1:78692007-78692026 None:intergenic 30.0%
! TACGCATAAGCTTTCTTTTA+CGG + chr2_1:78692056-78692075 Msa0227470:intron 30.0%
!! ACTTTTCTCCTTGTTTGTTT+TGG - chr2_1:78692187-78692206 None:intergenic 30.0%
!! AGAAAAGTGCTTTAGTTTGA+AGG + chr2_1:78692199-78692218 Msa0227470:intron 30.0%
AACTCATTCATATAGCAATG+TGG - chr2_1:78692413-78692432 None:intergenic 30.0%
! TCGACTAGATTTTATTGCTA+AGG + chr2_1:78693067-78693086 Msa0227470:five_prime_UTR 30.0%
!!! TTTTACTTGGTGATGAAAAC+AGG - chr2_1:78693139-78693158 None:intergenic 30.0%
TTTCATCACCAAGTAAAAGA+TGG + chr2_1:78693141-78693160 Msa0227470:CDS 30.0%
ACAAAAACGTTGCAGTATAT+AGG - chr2_1:78693558-78693577 None:intergenic 30.0%
! TACTATCTGAGATAGCAATA+TGG + chr2_1:78694212-78694231 Msa0227470:intron 30.0%
!!! ACATGTATTTTTTAGTGAGG+TGG + chr2_1:78694249-78694268 Msa0227470:intron 30.0%
!!! CATGTATTTTTTAGTGAGGT+GGG + chr2_1:78694250-78694269 Msa0227470:intron 30.0%
! AATTTTCTCCTCTGTATAGT+GGG + chr2_1:78694417-78694436 Msa0227470:intron 30.0%
AGAATTATCAAATGGCACAA+AGG + chr2_1:78695473-78695492 Msa0227470:CDS 30.0%
! CATTGTTAGAGTTAGTTTCA+TGG - chr2_1:78695578-78695597 None:intergenic 30.0%
!! TTGTTGATTTATGCTGTGAA+AGG - chr2_1:78695679-78695698 None:intergenic 30.0%
! TGAAAACACCATTTTACACT+TGG + chr2_1:78695710-78695729 Msa0227470:CDS 30.0%
! ATTTTGCCGTCGATAATAAT+TGG + chr2_1:78696029-78696048 Msa0227470:intron 30.0%
TACTCTCCAATTATTATCGA+CGG - chr2_1:78696038-78696057 None:intergenic 30.0%
AACATAGATCGTTTGAAAGA+GGG - chr2_1:78696126-78696145 None:intergenic 30.0%
AAACATAGATCGTTTGAAAG+AGG - chr2_1:78696127-78696146 None:intergenic 30.0%
GAGTTACTCTGAATTAAACA+TGG - chr2_1:78696242-78696261 None:intergenic 30.0%
TGTTTCTCTTTAAACTAGCT+AGG + chr2_1:78696547-78696566 Msa0227470:intron 30.0%
!! TTCTAGATAAAAGCATTGAG+TGG + chr2_1:78696709-78696728 Msa0227470:CDS 30.0%
ATAGAGAATACTTCAAATGC+AGG - chr2_1:78696858-78696877 None:intergenic 30.0%
TTCTCTATATGTTCGTTGAT+TGG + chr2_1:78696870-78696889 Msa0227470:CDS 30.0%
! TTGCCATTGAAACTTCTTTT+CGG + chr2_1:78696975-78696994 Msa0227470:CDS 30.0%
AGCAATGAAAGAAATGAACA+TGG - chr2_1:78697030-78697049 None:intergenic 30.0%
ATGTTCATTTCTTTCATTGC+TGG + chr2_1:78697029-78697048 Msa0227470:CDS 30.0%
ATAGAACAAGATACCATTCT+TGG - chr2_1:78697084-78697103 None:intergenic 30.0%
GATCAAGATATAAAGGAAAC+TGG - chr2_1:78697151-78697170 None:intergenic 30.0%
TGGATTGAAACTTATGAGTT+TGG + chr2_1:78697257-78697276 Msa0227470:three_prime_UTR 30.0%
ATTTGCCCACATAATGATAT+TGG - chr2_1:78697362-78697381 None:intergenic 30.0%
CATAGAACCAGGATTCATTT+CGG - chr2_1:78686850-78686869 None:intergenic 35.0%
TTCATTTCGGAATCATCTTG+AGG - chr2_1:78686879-78686898 None:intergenic 35.0%
ACATCTTCATCTTCATTTGC+AGG - chr2_1:78686921-78686940 None:intergenic 35.0%
GTACCTTATGACTATCTAGA+TGG + chr2_1:78686939-78686958 Msa0227470:five_prime_UTR 35.0%
!! AAGAGGAGTATCATCTCTTT+CGG - chr2_1:78687332-78687351 None:intergenic 35.0%
TCGTTGGAAAAAATGGTGAA+AGG + chr2_1:78687395-78687414 Msa0227470:five_prime_UTR 35.0%
! GGTGTTTCTCCCTTTTTATT+TGG - chr2_1:78687439-78687458 None:intergenic 35.0%
! GGTAAAGAAAGGTCCTTTTA+TGG - chr2_1:78687486-78687505 None:intergenic 35.0%
! CAATCTTGCTATGAATAACG+AGG + chr2_1:78687531-78687550 Msa0227470:five_prime_UTR 35.0%
GCCATTCATAGAGAAATGTT+CGG + chr2_1:78687574-78687593 Msa0227470:five_prime_UTR 35.0%
ACCGAACATTTCTCTATGAA+TGG - chr2_1:78687578-78687597 None:intergenic 35.0%
! GTATCCAATTTTTCGCTCTA+TGG + chr2_1:78687799-78687818 Msa0227470:five_prime_UTR 35.0%
GTAAAAATCAGCTATCATGG+TGG + chr2_1:78687885-78687904 Msa0227470:five_prime_UTR 35.0%
AAGTGACACACACACAAATA+TGG + chr2_1:78687929-78687948 Msa0227470:intron 35.0%
GTTATTATAGGCTTATTCGG+AGG - chr2_1:78688058-78688077 None:intergenic 35.0%
CGCGTTATTATAGGCTTATT+CGG - chr2_1:78688061-78688080 None:intergenic 35.0%
GATGACCATCTCTCAAAAAA+AGG - chr2_1:78688121-78688140 None:intergenic 35.0%
AGAGATGGTCATCATTCTTA+TGG + chr2_1:78688128-78688147 Msa0227470:intron 35.0%
! GGGTAGATAATGTATTGGTA+TGG - chr2_1:78688273-78688292 None:intergenic 35.0%
!! ATGGTGGGTAGATAATGTAT+TGG - chr2_1:78688278-78688297 None:intergenic 35.0%
ATGGAAGAAATCACCTTATG+TGG + chr2_1:78688459-78688478 Msa0227470:intron 35.0%
! TAGGAAAGCAAACTTTGAGA+GGG + chr2_1:78688658-78688677 Msa0227470:intron 35.0%
TTGATCACAAAACTTAGCGA+CGG + chr2_1:78688720-78688739 Msa0227470:intron 35.0%
CCTAACTACTACAATACGAA+AGG - chr2_1:78688834-78688853 None:intergenic 35.0%
CCTTTCGTATTGTAGTAGTT+AGG + chr2_1:78688831-78688850 Msa0227470:intron 35.0%
AGTTAGGGCTAAGAATTTGT+TGG + chr2_1:78688847-78688866 Msa0227470:intron 35.0%
! CTTGAATGGTCACAAGATTT+TGG - chr2_1:78689178-78689197 None:intergenic 35.0%
! GTCTACCTATTAGTTGATGT+TGG + chr2_1:78689235-78689254 Msa0227470:intron 35.0%
GACATCCAACATCAACTAAT+AGG - chr2_1:78689243-78689262 None:intergenic 35.0%
GATGAGATAAGAGTTGAACA+TGG + chr2_1:78689346-78689365 Msa0227470:intron 35.0%
GTTGAACATGGGTTTATAAG+TGG + chr2_1:78689358-78689377 Msa0227470:intron 35.0%
GGAAATCTTAACTCACATCT+AGG - chr2_1:78689541-78689560 None:intergenic 35.0%
! TAGTGACATTTTGTGTAAGG+CGG - chr2_1:78689669-78689688 None:intergenic 35.0%
GTGTTCTTAGATGTATAGAG+TGG + chr2_1:78689820-78689839 Msa0227470:intron 35.0%
AATCAGGGAGTCAAATACAA+AGG - chr2_1:78689848-78689867 None:intergenic 35.0%
! TTTGGTTCATCTAGGAATCA+TGG + chr2_1:78689989-78690008 Msa0227470:intron 35.0%
!!! GTGCGTTATCTTTTTAAGGT+TGG + chr2_1:78690015-78690034 Msa0227470:intron 35.0%
!!! CGTTATCTTTTTAAGGTTGG+TGG + chr2_1:78690018-78690037 Msa0227470:intron 35.0%
TACCTAAAAAGAGAGGATAC+AGG - chr2_1:78690367-78690386 None:intergenic 35.0%
GTCACTTCCTGAAGATTATA+TGG - chr2_1:78690691-78690710 None:intergenic 35.0%
CTATCCAAAAGAACTAGACT+CGG + chr2_1:78690772-78690791 Msa0227470:intron 35.0%
TATCCAAAAGAACTAGACTC+GGG + chr2_1:78690773-78690792 Msa0227470:intron 35.0%
! TTCAGATCTAGGATTAACGA+TGG + chr2_1:78690815-78690834 Msa0227470:intron 35.0%
! TGAAAGAAAAGAAAGCGTGT+GGG - chr2_1:78690938-78690957 None:intergenic 35.0%
! TTGAAAGAAAAGAAAGCGTG+TGG - chr2_1:78690939-78690958 None:intergenic 35.0%
CTTTGACATTGTTGCACTAT+TGG - chr2_1:78691588-78691607 None:intergenic 35.0%
CAATAGTGCAACAATGTCAA+AGG + chr2_1:78691586-78691605 Msa0227470:intron 35.0%
! CCATGTGGTTTTCAATTACA+AGG - chr2_1:78691630-78691649 None:intergenic 35.0%
CCTTGTAATTGAAAACCACA+TGG + chr2_1:78691627-78691646 Msa0227470:intron 35.0%
!! TTGAAAGCATCTTAACCATG+TGG - chr2_1:78691645-78691664 None:intergenic 35.0%
! TGTATAGGTTTGGTATCTTG+TGG - chr2_1:78691722-78691741 None:intergenic 35.0%
GTAAAAGAAAGCTTATGCGT+AGG - chr2_1:78692057-78692076 None:intergenic 35.0%
!!! TTTCTCCTTGTTTGTTTTGG+AGG - chr2_1:78692184-78692203 None:intergenic 35.0%
TTTAGCAAATGGTAGTCCTT+CGG + chr2_1:78692349-78692368 Msa0227470:intron 35.0%
!!! AAGATTTTCGGGTTTGTAGA+AGG + chr2_1:78692372-78692391 Msa0227470:intron 35.0%
!!! AGATTTTCGGGTTTGTAGAA+GGG + chr2_1:78692373-78692392 Msa0227470:intron 35.0%
ATACGGAATTGCGACAAATT+TGG + chr2_1:78692458-78692477 Msa0227470:intron 35.0%
TACGGAATTGCGACAAATTT+GGG + chr2_1:78692459-78692478 Msa0227470:intron 35.0%
GTATGAAGTTCAAATCCTGT+TGG + chr2_1:78692765-78692784 Msa0227470:intron 35.0%
TTAGTGATGATATTTCGACG+TGG + chr2_1:78692929-78692948 Msa0227470:intron 35.0%
TGAAAACAGGATTTGCCATA+TGG - chr2_1:78693126-78693145 None:intergenic 35.0%
! TGAGTAGACCATCTTTTACT+TGG - chr2_1:78693152-78693171 None:intergenic 35.0%
CCTACCATTATGTTACTCAA+GGG + chr2_1:78693234-78693253 Msa0227470:intron 35.0%
ATCTCCCTTGAGTAACATAA+TGG - chr2_1:78693241-78693260 None:intergenic 35.0%
! TTGTTGTTGCTGTTATCATG+CGG + chr2_1:78693432-78693451 Msa0227470:intron 35.0%
AAACTTAGGGGCAATAAAGA+GGG + chr2_1:78693678-78693697 Msa0227470:intron 35.0%
! GTTAAGAAGAAGCACAAATG+TGG + chr2_1:78693700-78693719 Msa0227470:CDS 35.0%
! TCTGAGATAGCAATATGGAT+TGG + chr2_1:78694217-78694236 Msa0227470:intron 35.0%
CACTATACAGAGGAGAAAAT+TGG - chr2_1:78694418-78694437 None:intergenic 35.0%
! CAATTTTCTCCTCTGTATAG+TGG + chr2_1:78694416-78694435 Msa0227470:intron 35.0%
! ATTTTCTCCTCTGTATAGTG+GGG + chr2_1:78694418-78694437 Msa0227470:intron 35.0%
ATCATAGTTGTGTATTGCAG+AGG + chr2_1:78695254-78695273 Msa0227470:intron 35.0%
!! TTTTTGGCAGTAGCAAAAAG+TGG + chr2_1:78695360-78695379 Msa0227470:CDS 35.0%
AAGTGGCGTAGTTGAAATTA+TGG + chr2_1:78695377-78695396 Msa0227470:CDS 35.0%
TATTTGCTTGCAGCAAAACA+TGG + chr2_1:78695504-78695523 Msa0227470:CDS 35.0%
GGGTTGCCACATTAATTAAT+AGG - chr2_1:78696105-78696124 None:intergenic 35.0%
ACATAGATCGTTTGAAAGAG+GGG - chr2_1:78696125-78696144 None:intergenic 35.0%
! CTTCTATGATGGTAATGATC+TGG - chr2_1:78696636-78696655 None:intergenic 35.0%
! CTTCTTTGTTGCTTCTATGA+TGG - chr2_1:78696647-78696666 None:intergenic 35.0%
CATCATAGAAGCAACAAAGA+AGG + chr2_1:78696645-78696664 Msa0227470:CDS 35.0%
TCAGGAAAACCAAATTTCGA+AGG + chr2_1:78696828-78696847 Msa0227470:CDS 35.0%
TTCGAGAAGTGAGTATAGAA+AGG - chr2_1:78696929-78696948 None:intergenic 35.0%
AGAAATGAACATGGCAACAA+TGG - chr2_1:78697021-78697040 None:intergenic 35.0%
GAATGTGAGAGGTAAACAAA+TGG - chr2_1:78697117-78697136 None:intergenic 35.0%
TGTTTACCTCTCACATTCTA+TGG + chr2_1:78697119-78697138 Msa0227470:CDS 35.0%
TTGATCTTGTCAAAGTTACG+TGG + chr2_1:78697165-78697184 Msa0227470:CDS 35.0%
!! ATGTTTAGAGTACTGGTTGT+TGG + chr2_1:78697312-78697331 Msa0227470:three_prime_UTR 35.0%
AAGAGGAACAGCATTACATG+TGG + chr2_1:78687219-78687238 Msa0227470:five_prime_UTR 40.0%
! ACGTTTTACACTGTCTTCGT+CGG - chr2_1:78687257-78687276 None:intergenic 40.0%
TGAATCCTCTATATGCTGCA+AGG - chr2_1:78687357-78687376 None:intergenic 40.0%
TGCAAGCACAGCACAAAAAA+GGG - chr2_1:78687461-78687480 None:intergenic 40.0%
ATGAATGGCAACGTGAAGAA+TGG - chr2_1:78687563-78687582 None:intergenic 40.0%
ATCTATGTGTCTTGTCCAAC+AGG + chr2_1:78687752-78687771 Msa0227470:intron 40.0%
! TCCAATTTTTCGCTCTATGG+AGG + chr2_1:78687802-78687821 Msa0227470:five_prime_UTR 40.0%
TCCTCCATAGAGCGAAAAAT+TGG - chr2_1:78687806-78687825 None:intergenic 40.0%
CTAGTAGCAAGCATTTCAAG+AGG - chr2_1:78687845-78687864 None:intergenic 40.0%
! CTCTTGAAATGCTTGCTACT+AGG + chr2_1:78687843-78687862 Msa0227470:five_prime_UTR 40.0%
AGAGATCACGTCTTACATGT+TGG + chr2_1:78688088-78688107 Msa0227470:intron 40.0%
! ATAATGTATTGGTATGGCGG+TGG - chr2_1:78688267-78688286 None:intergenic 40.0%
!! CTATGTAAGTACTGATTGGG+AGG + chr2_1:78688315-78688334 Msa0227470:intron 40.0%
ACGAAGTAGATTGGGATTTG+CGG + chr2_1:78688390-78688409 Msa0227470:intron 40.0%
CCTAAACCTTCAACAACCAA+TGG - chr2_1:78688554-78688573 None:intergenic 40.0%
! CCATTGGTTGTTGAAGGTTT+AGG + chr2_1:78688551-78688570 Msa0227470:intron 40.0%
TTGGTTGTTGAAGGTTTAGG+TGG + chr2_1:78688554-78688573 Msa0227470:intron 40.0%
CTAGGAAAGCAAACTTTGAG+AGG + chr2_1:78688657-78688676 Msa0227470:intron 40.0%
TACTGAGGGAAATTTAGTGC+AGG - chr2_1:78688770-78688789 None:intergenic 40.0%
!! TTTTGGGAGAAACTCTTGTG+TGG + chr2_1:78689029-78689048 Msa0227470:intron 40.0%
TTTGGGAGAAACTCTTGTGT+GGG + chr2_1:78689030-78689049 Msa0227470:intron 40.0%
AGAAGTGACTCAACGAATCT+TGG - chr2_1:78689470-78689489 None:intergenic 40.0%
TTCGTTGAGTCACTTCTATC+CGG + chr2_1:78689473-78689492 Msa0227470:intron 40.0%
CATCCATAGTGTGACTTTAG+TGG - chr2_1:78689512-78689531 None:intergenic 40.0%
! AGTGACATTTTGTGTAAGGC+GGG - chr2_1:78689668-78689687 None:intergenic 40.0%
TTGTATTATTCGAGGGTCGT+AGG + chr2_1:78689901-78689920 Msa0227470:intron 40.0%
TGTATTATTCGAGGGTCGTA+GGG + chr2_1:78689902-78689921 Msa0227470:intron 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG - chr2_1:78690067-78690086 None:intergenic 40.0%
! CTCCTGTATCCTCTCTTTTT+AGG + chr2_1:78690362-78690381 Msa0227470:intron 40.0%
!!! CGAGTCTAGTTCTTTTGGAT+AGG - chr2_1:78690774-78690793 None:intergenic 40.0%
!!! TTACCCGAGTCTAGTTCTTT+TGG - chr2_1:78690779-78690798 None:intergenic 40.0%
! ACCTCATACGGTTGATGTTT+AGG + chr2_1:78690885-78690904 Msa0227470:intron 40.0%
TCCTAAACATCAACCGTATG+AGG - chr2_1:78690889-78690908 None:intergenic 40.0%
! AGGTGTTTCTGTCAAAGTCT+AGG + chr2_1:78691158-78691177 Msa0227470:intron 40.0%
ACTCTTATGATACCTAGCCA+TGG + chr2_1:78691251-78691270 Msa0227470:intron 40.0%
ATTACATAACGACCATGGCT+AGG - chr2_1:78691266-78691285 None:intergenic 40.0%
TCTAGCATCTCATATGTGTG+TGG - chr2_1:78691886-78691905 None:intergenic 40.0%
! ATGCTAGATTTTGTACCCCT+CGG + chr2_1:78691898-78691917 Msa0227470:intron 40.0%
! ATGATGATGTGGACGATGTT+TGG - chr2_1:78692113-78692132 None:intergenic 40.0%
!!! TGTTTTGGAGGTAGAGCTTT+TGG - chr2_1:78692172-78692191 None:intergenic 40.0%
CTCTACCTCCAAAACAAACA+AGG + chr2_1:78692176-78692195 Msa0227470:intron 40.0%
GTTATGTGCCATACAGAGTT+TGG + chr2_1:78692272-78692291 Msa0227470:intron 40.0%
ACTAACCACCAAACTCTGTA+TGG - chr2_1:78692283-78692302 None:intergenic 40.0%
! ATACAGAGTTTGGTGGTTAG+TGG + chr2_1:78692282-78692301 Msa0227470:intron 40.0%
! GTAGTCCTTCGGAAGATTTT+CGG + chr2_1:78692360-78692379 Msa0227470:intron 40.0%
! TAGTCCTTCGGAAGATTTTC+GGG + chr2_1:78692361-78692380 Msa0227470:intron 40.0%
AGCACGGGTATTATAAGAGA+TGG + chr2_1:78692501-78692520 Msa0227470:intron 40.0%
AAAGATGGTCTACTCAGTCA+TGG + chr2_1:78693156-78693175 Msa0227470:CDS 40.0%
GCCTACCATTATGTTACTCA+AGG + chr2_1:78693233-78693252 Msa0227470:intron 40.0%
CCCTTGAGTAACATAATGGT+AGG - chr2_1:78693237-78693256 None:intergenic 40.0%
TGCACAAAGCAAAAGAGCAA+TGG - chr2_1:78693620-78693639 None:intergenic 40.0%
CAAACTTAGGGGCAATAAAG+AGG + chr2_1:78693677-78693696 Msa0227470:intron 40.0%
! GTGTATTGACATGTGTGAAG+TGG - chr2_1:78693939-78693958 None:intergenic 40.0%
! ATTTTGAACTCGTCGCTAGT+AGG + chr2_1:78694278-78694297 Msa0227470:intron 40.0%
! TTTTGAACTCGTCGCTAGTA+GGG + chr2_1:78694279-78694298 Msa0227470:intron 40.0%
! TTTTCTCCTCTGTATAGTGG+GGG + chr2_1:78694419-78694438 Msa0227470:intron 40.0%
! ATTTTTCCCCCACTATACAG+AGG - chr2_1:78694428-78694447 None:intergenic 40.0%
GCAGGTCAACTAAAGATGTA+GGG - chr2_1:78694786-78694805 None:intergenic 40.0%
TAGTTCATCTAAATAGGGCG+TGG - chr2_1:78694815-78694834 None:intergenic 40.0%
AACTATTGACAGGACGAAAC+TGG + chr2_1:78694830-78694849 Msa0227470:intron 40.0%
! CTTTCTAGGGATGGCAAAAA+GGG - chr2_1:78694870-78694889 None:intergenic 40.0%
! TCTTTCTAGGGATGGCAAAA+AGG - chr2_1:78694871-78694890 None:intergenic 40.0%
! AAGGATACTCTTTCTAGGGA+TGG - chr2_1:78694879-78694898 None:intergenic 40.0%
AAATCAAATCCAGTGGGAGA+AGG + chr2_1:78695288-78695307 Msa0227470:CDS 40.0%
GGGAGAAGGAAATCAAAGAA+TGG + chr2_1:78695302-78695321 Msa0227470:CDS 40.0%
! GTAAAGGCATGTGACAAGAA+AGG + chr2_1:78695417-78695436 Msa0227470:CDS 40.0%
AGATGCTGCCAAGTGTAAAA+TGG - chr2_1:78695721-78695740 None:intergenic 40.0%
AACACAACGAAAACACTGCT+TGG + chr2_1:78695748-78695767 Msa0227470:CDS 40.0%
AAATGATGTGGGACATCAAG+TGG + chr2_1:78695793-78695812 Msa0227470:CDS 40.0%
GTACAAGGTACGCATATGAT+TGG + chr2_1:78695815-78695834 Msa0227470:intron 40.0%
AACAAAGAAGGAAAAACCCC+AGG + chr2_1:78696657-78696676 Msa0227470:CDS 40.0%
AACCCCAGGTGAAATCTTTA+AGG + chr2_1:78696671-78696690 Msa0227470:CDS 40.0%
CTCCTTAAAGATTTCACCTG+GGG - chr2_1:78696676-78696695 None:intergenic 40.0%
CCTCCTTAAAGATTTCACCT+GGG - chr2_1:78696677-78696696 None:intergenic 40.0%
TCCTCCTTAAAGATTTCACC+TGG - chr2_1:78696678-78696697 None:intergenic 40.0%
CTGATTCATCATTTCCTCCA+GGG - chr2_1:78696812-78696831 None:intergenic 40.0%
AGGCCGAAAAGAAGTTTCAA+TGG - chr2_1:78696981-78697000 None:intergenic 40.0%
ACAACTCCATAGAATGTGAG+AGG - chr2_1:78697128-78697147 None:intergenic 40.0%
ATCTTGTCAAAGTTACGTGG+AGG + chr2_1:78697168-78697187 Msa0227470:CDS 40.0%
TGATATGGACTCAACATGAG+TGG + chr2_1:78697499-78697518 Msa0227470:three_prime_UTR 40.0%
GAACCTTCCGAAATGAATCC+TGG + chr2_1:78686840-78686859 Msa0227470:five_prime_UTR 45.0%
GAACCAGGATTCATTTCGGA+AGG - chr2_1:78686846-78686865 None:intergenic 45.0%
TGAGGCTGAATCATAGAACC+AGG - chr2_1:78686861-78686880 None:intergenic 45.0%
GCAGGCTGAATCGTAGAATT+AGG - chr2_1:78686903-78686922 None:intergenic 45.0%
!! AGTGGGTAATGGAAGACGAT+TGG + chr2_1:78687137-78687156 Msa0227470:five_prime_UTR 45.0%
!! GTGGGTAATGGAAGACGATT+GGG + chr2_1:78687138-78687157 Msa0227470:five_prime_UTR 45.0%
CTATATGCTGCAAGGTGAAG+AGG - chr2_1:78687349-78687368 None:intergenic 45.0%
CTTCACCTTGCAGCATATAG+AGG + chr2_1:78687349-78687368 Msa0227470:five_prime_UTR 45.0%
GCAAGCACAGCACAAAAAAG+GGG - chr2_1:78687460-78687479 None:intergenic 45.0%
GTGCAAGCACAGCACAAAAA+AGG - chr2_1:78687462-78687481 None:intergenic 45.0%
TGTGTCTTGTCCAACAGGTA+TGG + chr2_1:78687757-78687776 Msa0227470:intron 45.0%
ATGGAGCCCAATTAACCAAG+TGG + chr2_1:78688147-78688166 Msa0227470:intron 45.0%
AGTTGTTGCGACGTGTATAG+TGG + chr2_1:78688193-78688212 Msa0227470:intron 45.0%
!! GACGTGTATAGTGGATGTTG+TGG + chr2_1:78688202-78688221 Msa0227470:intron 45.0%
ACGTGTCTCTCAACACTACT+AGG + chr2_1:78688639-78688658 Msa0227470:intron 45.0%
ACTTAGCGACGGAATTAGAG+AGG + chr2_1:78688731-78688750 Msa0227470:intron 45.0%
CTTAGCGACGGAATTAGAGA+GGG + chr2_1:78688732-78688751 Msa0227470:intron 45.0%
TGATGTTGGATGTCGAACGA+AGG + chr2_1:78689249-78689268 Msa0227470:intron 45.0%
ATGTCGAACGAAGGTGGTTA+AGG + chr2_1:78689258-78689277 Msa0227470:intron 45.0%
TAGTGGCTCGATAGTGAAAC+CGG - chr2_1:78689495-78689514 None:intergenic 45.0%
GAGCCACTAAAGTCACACTA+TGG + chr2_1:78689506-78689525 Msa0227470:intron 45.0%
AGGTTATTTATAGGGCAGCG+AGG + chr2_1:78689763-78689782 Msa0227470:intron 45.0%
GTGAGCTTAACTCAGTTGGT+AGG - chr2_1:78690068-78690087 None:intergenic 45.0%
!! GTTTGATGGCGTTGTTGCTT+TGG - chr2_1:78691439-78691458 None:intergenic 45.0%
! TTTGGAGGTAGAGCTTTTGG+AGG - chr2_1:78692169-78692188 None:intergenic 45.0%
ATGTGCCATACAGAGTTTGG+TGG + chr2_1:78692275-78692294 Msa0227470:intron 45.0%
! AGAGTTTGGTGGTTAGTGGT+TGG + chr2_1:78692286-78692305 Msa0227470:intron 45.0%
! GAGTTTGGTGGTTAGTGGTT+GGG + chr2_1:78692287-78692306 Msa0227470:intron 45.0%
!! TTAGTGGTTGGGTTGGATGA+AGG + chr2_1:78692298-78692317 Msa0227470:intron 45.0%
CAAACCCGAAAATCTTCCGA+AGG - chr2_1:78692368-78692387 None:intergenic 45.0%
ATGGTCTACTCAGTCATGGT+GGG + chr2_1:78693160-78693179 Msa0227470:CDS 45.0%
GTTGCAGTATATAGGAGCTG+AGG - chr2_1:78693550-78693569 None:intergenic 45.0%
CCACACATGTACGACTGATA+AGG - chr2_1:78693757-78693776 None:intergenic 45.0%
CCTTATCAGTCGTACATGTG+TGG + chr2_1:78693754-78693773 Msa0227470:CDS 45.0%
TATCAGTCGTACATGTGTGG+TGG + chr2_1:78693757-78693776 Msa0227470:CDS 45.0%
ATCAGTCGTACATGTGTGGT+GGG + chr2_1:78693758-78693777 Msa0227470:CDS 45.0%
GGGATTGATCCCTTTGATCA+CGG + chr2_1:78693778-78693797 Msa0227470:CDS 45.0%
CCATGTTCTCCGTGATCAAA+GGG - chr2_1:78693790-78693809 None:intergenic 45.0%
ACCATGTTCTCCGTGATCAA+AGG - chr2_1:78693791-78693810 None:intergenic 45.0%
TGCCTAACCCGCTAAAAAGT+AGG + chr2_1:78694311-78694330 Msa0227470:intron 45.0%
GCCTAACCCGCTAAAAAGTA+GGG + chr2_1:78694312-78694331 Msa0227470:intron 45.0%
! TCTGATCCCATCCCGTTTTA+TGG - chr2_1:78694756-78694775 None:intergenic 45.0%
GGCAGGTCAACTAAAGATGT+AGG - chr2_1:78694787-78694806 None:intergenic 45.0%
ATCTAAATAGGGCGTGGAGT+GGG - chr2_1:78694809-78694828 None:intergenic 45.0%
ATTGACAGGACGAAACTGGA+TGG + chr2_1:78694834-78694853 Msa0227470:intron 45.0%
! CTTTGATTTCCTTCTCCCAC+TGG - chr2_1:78695300-78695319 None:intergenic 45.0%
TAGACAACCGCAAGTTGTTG+AGG + chr2_1:78695626-78695645 Msa0227470:CDS 45.0%
AGACAACCGCAAGTTGTTGA+GGG + chr2_1:78695627-78695646 Msa0227470:CDS 45.0%
ACAACGAAAACACTGCTTGG+AGG + chr2_1:78695751-78695770 Msa0227470:CDS 45.0%
AACACTGCTTGGAGGATATC+TGG + chr2_1:78695759-78695778 Msa0227470:CDS 45.0%
TGCAGCCATGCAAATGATGT+GGG + chr2_1:78695782-78695801 Msa0227470:CDS 45.0%
GATGTCCCACATCATTTGCA+TGG - chr2_1:78695790-78695809 None:intergenic 45.0%
! CCCAGGTGAAATCTTTAAGG+AGG + chr2_1:78696674-78696693 Msa0227470:CDS 45.0%
CCTGATTCATCATTTCCTCC+AGG - chr2_1:78696813-78696832 None:intergenic 45.0%
CCTGGAGGAAATGATGAATC+AGG + chr2_1:78696810-78696829 Msa0227470:CDS 45.0%
GCAGGTTGTCCTTCGAAATT+TGG - chr2_1:78696840-78696859 None:intergenic 45.0%
TGGCTACGAAGAGAGAACTT+AGG - chr2_1:78697001-78697020 None:intergenic 45.0%
TGTCAAAGTTACGTGGAGGA+AGG + chr2_1:78697172-78697191 Msa0227470:CDS 45.0%
TTAACACCCTTGATGCTTGG+TGG - chr2_1:78697203-78697222 None:intergenic 45.0%
AGCTTAACACCCTTGATGCT+TGG - chr2_1:78697206-78697225 None:intergenic 45.0%
!! TCAAGGGTGTTAAGCTGTAG+AGG + chr2_1:78697210-78697229 Msa0227470:CDS 45.0%
!!! TTTAATTTTATGAATATATA+TGG + chr2_1:78687956-78687975 Msa0227470:intron 5.0%
!! ATATATATATATATATATAG+AGG + chr2_1:78690579-78690598 Msa0227470:intron 5.0%
!! ATATATATATATATATATAG+AGG + chr2_1:78690579-78690598 Msa0227470:intron 5.0%
!!! AAATATAAGTTTTTTTTTAT+TGG - chr2_1:78695037-78695056 None:intergenic 5.0%
CTGTGCTTGCACGCCATAAA+AGG + chr2_1:78687470-78687489 Msa0227470:five_prime_UTR 50.0%
TGTTGGATGTCGAACGAAGG+TGG + chr2_1:78689252-78689271 Msa0227470:intron 50.0%
ATTCGAGGGTCGTAGGGTAA+AGG + chr2_1:78689908-78689927 Msa0227470:intron 50.0%
TTCGAGGGTCGTAGGGTAAA+GGG + chr2_1:78689909-78689928 Msa0227470:intron 50.0%
CCTCGTGAGCTTAACTCAGT+TGG - chr2_1:78690072-78690091 None:intergenic 50.0%
CCAACTGAGTTAAGCTCACG+AGG + chr2_1:78690069-78690088 Msa0227470:intron 50.0%
! CTAGATTTTGTACCCCTCGG+TGG + chr2_1:78691901-78691920 Msa0227470:intron 50.0%
! TTGGTGGTTAGTGGTTGGGT+TGG + chr2_1:78692291-78692310 Msa0227470:intron 50.0%
GTAGAAGGGATGAGACACAC+AGG + chr2_1:78692387-78692406 Msa0227470:intron 50.0%
GATGGTCTACTCAGTCATGG+TGG + chr2_1:78693159-78693178 Msa0227470:CDS 50.0%
TGGTCTACTCAGTCATGGTG+GGG + chr2_1:78693161-78693180 Msa0227470:CDS 50.0%
CCCTTTGATCACGGAGAACA+TGG + chr2_1:78693787-78693806 Msa0227470:CDS 50.0%
!!! TTTTAGCGGGTTAGGCAGAG+CGG - chr2_1:78694308-78694327 None:intergenic 50.0%
!!! GCCCTACTTTTTAGCGGGTT+AGG - chr2_1:78694316-78694335 None:intergenic 50.0%
!!! CCACTGCCCTACTTTTTAGC+GGG - chr2_1:78694321-78694340 None:intergenic 50.0%
!!! GCCACTGCCCTACTTTTTAG+CGG - chr2_1:78694322-78694341 None:intergenic 50.0%
GCTAAAAAGTAGGGCAGTGG+CGG + chr2_1:78694321-78694340 Msa0227470:intron 50.0%
CTAAAAAGTAGGGCAGTGGC+GGG + chr2_1:78694322-78694341 Msa0227470:intron 50.0%
TTTATGGAGGACCGACGGAT+TGG - chr2_1:78694740-78694759 None:intergenic 50.0%
TCCGTCGGTCCTCCATAAAA+CGG + chr2_1:78694741-78694760 Msa0227470:intron 50.0%
GGTCCTCCATAAAACGGGAT+GGG + chr2_1:78694747-78694766 Msa0227470:intron 50.0%
! GATCCCATCCCGTTTTATGG+AGG - chr2_1:78694753-78694772 None:intergenic 50.0%
TCTAAATAGGGCGTGGAGTG+GGG - chr2_1:78694808-78694827 None:intergenic 50.0%
CATCTAAATAGGGCGTGGAG+TGG - chr2_1:78694810-78694829 None:intergenic 50.0%
GACAACCGCAAGTTGTTGAG+GGG + chr2_1:78695628-78695647 Msa0227470:CDS 50.0%
CACAACCCCTCAACAACTTG+CGG - chr2_1:78695636-78695655 None:intergenic 50.0%
AGTTGTTGAGGGGTTGTGGA+AGG + chr2_1:78695638-78695657 Msa0227470:CDS 50.0%
GTTGTTGAGGGGTTGTGGAA+GGG + chr2_1:78695639-78695658 Msa0227470:CDS 50.0%
TTGTTGAGGGGTTGTGGAAG+GGG + chr2_1:78695640-78695659 Msa0227470:CDS 50.0%
GTGCAGCCATGCAAATGATG+TGG + chr2_1:78695781-78695800 Msa0227470:CDS 50.0%
GTGGGACATCAAGTGGTACA+AGG + chr2_1:78695800-78695819 Msa0227470:CDS 50.0%
CATTACCCACTCGCGGAACT+CGG - chr2_1:78687128-78687147 None:intergenic 55.0%
CGTCTTCCATTACCCACTCG+CGG - chr2_1:78687135-78687154 None:intergenic 55.0%
CGCTCTATGGAGGACGAACA+TGG + chr2_1:78687812-78687831 Msa0227470:five_prime_UTR 55.0%
GTTGAAGACGCTGCAGACCA+AGG + chr2_1:78691210-78691229 Msa0227470:intron 55.0%
TGAACTCGTCGCTAGTAGGG+TGG + chr2_1:78694282-78694301 Msa0227470:intron 55.0%
CCCGCTAAAAAGTAGGGCAG+TGG + chr2_1:78694318-78694337 Msa0227470:intron 55.0%
! CCCGTTTTATGGAGGACCGA+CGG - chr2_1:78694745-78694764 None:intergenic 55.0%
CCGTCGGTCCTCCATAAAAC+GGG + chr2_1:78694742-78694761 Msa0227470:intron 55.0%
CGGTCCTCCATAAAACGGGA+TGG + chr2_1:78694746-78694765 Msa0227470:intron 55.0%
CGCAAGTTGTTGAGGGGTTG+TGG + chr2_1:78695634-78695653 Msa0227470:CDS 55.0%
GTGCCACCACCAAGCATCAA+GGG + chr2_1:78697194-78697213 Msa0227470:CDS 55.0%
! ACACCCTTGATGCTTGGTGG+TGG - chr2_1:78697200-78697219 None:intergenic 55.0%
CGAGTTCCGCGAGTGGGTAA+TGG + chr2_1:78687126-78687145 Msa0227470:five_prime_UTR 60.0%
GAGGGTCGTAGGGTAAAGGG+AGG + chr2_1:78689912-78689931 Msa0227470:intron 60.0%
!! CAGTGGCGGGTTGACCTGTT+GGG + chr2_1:78694335-78694354 Msa0227470:intron 60.0%
!! ATGGAGGACCGACGGATTGG+CGG - chr2_1:78694737-78694756 None:intergenic 60.0%
GTTGTAGCAGCACTCGTCGC+AGG + chr2_1:78696759-78696778 Msa0227470:CDS 60.0%
ACATCAGGCAGTGTCCCTGG+AGG + chr2_1:78696795-78696814 Msa0227470:CDS 60.0%
! GGTGCCACCACCAAGCATCA+AGG + chr2_1:78697193-78697212 Msa0227470:CDS 60.0%
TAGCTGCCGAGTTCCGCGAG+TGG + chr2_1:78687119-78687138 Msa0227470:intron 65.0%
AGCTGCCGAGTTCCGCGAGT+GGG + chr2_1:78687120-78687139 Msa0227470:intron 65.0%
!! GCAGTGGCGGGTTGACCTGT+TGG + chr2_1:78694334-78694353 Msa0227470:intron 65.0%
GGGTCAACCCGCCAATCCGT+CGG + chr2_1:78694726-78694745 Msa0227470:intron 65.0%
!! TGGAGGACCGACGGATTGGC+GGG - chr2_1:78694736-78694755 None:intergenic 65.0%
AATAGGGCGTGGAGTGGGGC+AGG - chr2_1:78694804-78694823 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 78686794 78697528 78686794 ID=Msa0227470;Name=Msa0227470
chr2_1 mRNA 78686794 78697528 78686794 ID=Msa0227470-mRNA-1;Parent=Msa0227470;Name=Msa0227470-mRNA-1;_AED=0.09;_eAED=0.09;_QI=916|1|1|1|1|1|7|299|469
chr2_1 exon 78686794 78686960 78686794 ID=Msa0227470-mRNA-1:exon:23922;Parent=Msa0227470-mRNA-1
chr2_1 exon 78687122 78687595 78687122 ID=Msa0227470-mRNA-1:exon:23923;Parent=Msa0227470-mRNA-1
chr2_1 exon 78687774 78687926 78687774 ID=Msa0227470-mRNA-1:exon:23924;Parent=Msa0227470-mRNA-1
chr2_1 exon 78692988 78693182 78692988 ID=Msa0227470-mRNA-1:exon:23925;Parent=Msa0227470-mRNA-1
chr2_1 exon 78693686 78693859 78693686 ID=Msa0227470-mRNA-1:exon:23926;Parent=Msa0227470-mRNA-1
chr2_1 exon 78695274 78695821 78695274 ID=Msa0227470-mRNA-1:exon:23927;Parent=Msa0227470-mRNA-1
chr2_1 exon 78696615 78697528 78696615 ID=Msa0227470-mRNA-1:exon:23928;Parent=Msa0227470-mRNA-1
chr2_1 five_prime_UTR 78686794 78686960 78686794 ID=Msa0227470-mRNA-1:five_prime_utr;Parent=Msa0227470-mRNA-1
chr2_1 five_prime_UTR 78687122 78687595 78687122 ID=Msa0227470-mRNA-1:five_prime_utr;Parent=Msa0227470-mRNA-1
chr2_1 five_prime_UTR 78687774 78687926 78687774 ID=Msa0227470-mRNA-1:five_prime_utr;Parent=Msa0227470-mRNA-1
chr2_1 five_prime_UTR 78692988 78693109 78692988 ID=Msa0227470-mRNA-1:five_prime_utr;Parent=Msa0227470-mRNA-1
chr2_1 CDS 78693110 78693182 78693110 ID=Msa0227470-mRNA-1:cds;Parent=Msa0227470-mRNA-1
chr2_1 CDS 78693686 78693859 78693686 ID=Msa0227470-mRNA-1:cds;Parent=Msa0227470-mRNA-1
chr2_1 CDS 78695274 78695821 78695274 ID=Msa0227470-mRNA-1:cds;Parent=Msa0227470-mRNA-1
chr2_1 CDS 78696615 78697229 78696615 ID=Msa0227470-mRNA-1:cds;Parent=Msa0227470-mRNA-1
chr2_1 three_prime_UTR 78697230 78697528 78697230 ID=Msa0227470-mRNA-1:three_prime_utr;Parent=Msa0227470-mRNA-1
Gene Sequence

>Msa0227470

ATGTTTGTATTCACCATATGGCAAATCCTGTTTTCATCACCAAGTAAAAGATGGTCTACTCAGTCATGGTGGGGGGCAATAAAGAGGGTTAAGAAGAAGCACAAATGTGGTAGTCAGCTCTTGAAAGCATTTATGAAAGATCCTTATCAGTCGTACATGTGTGGTGGGATTGATCCCTTTGATCACGGAGAACATGGTGAAGAAATAAAAGAGAAAAATAATAGAAAATTCAAGACTCAATATGAAGAGGATTTAAAAAAGAAATCAAATCCAGTGGGAGAAGGAAATCAAAGAATGGAAGATTCAACAAAAAATGTTGAAAAAGATACGACATTTTTGGCAGTAGCAAAAAGTGGCGTAGTTGAAATTATGGAAGAGCTTAATTCAAAAGTAAAGGCATGTGACAAGAAAGGCTTATTACTTGTAGCAATGAAGAATATTGCATCAGAATTATCAAATGGCACAAAGGACACAGCATATTTGCTTGCAGCAAAACATGGCATAACAGAAATCATGCGTGAGCTTGAATCTAAACTAAAAAGTGTCATCCATGAAACTAACTCTAACAATGAAAATGCATTACTTATAGCAGTGAAGAATAGACAACCGCAAGTTGTTGAGGGGTTGTGGAAGGGGCTTTCTATGCAAACCTTTCACAGCATAAATCAACAAGTTGATAAGGATGAAAACACCATTTTACACTTGGCAGCATCTACAATAAAACACAACGAAAACACTGCTTGGAGGATATCTGGTGCAGCCATGCAAATGATGTGGGACATCAAGTGGTACAAGTACATTAAAAGACTAGTACCAGATCATTACCATCATAGAAGCAACAAAGAAGGAAAAACCCCAGGTGAAATCTTTAAGGAGGAACACAAAGAACTTCTAGATAAAAGCATTGAGTGGTTGAAAGACACATCAGAGTCATGCTCAGTTGTAGCAGCACTCGTCGCAGGCGTCTCCTTTGCTACATCAGGCAGTGTCCCTGGAGGAAATGATGAATCAGGAAAACCAAATTTCGAAGGACAACCTGCATTTGAAGTATTCTCTATATGTTCGTTGATTGGACTTTACTTCTCTGTCACTGCACTCATCATGTTCCTTTCTATACTCACTTCTCGAAAACAAGTCGAAGACTTCAATAGAAACTTGCCATTGAAACTTCTTTTCGGCCTAAGTTCTCTCTTCGTAGCCATTGTTGCCATGTTCATTTCTTTCATTGCTGGACACTACTTTGTACTCACAGATAAATATACCAAGAATGGTATCTTGTTCTATTTATATATTGCCATTTGTTTACCTCTCACATTCTATGGAGTTGTCCAGTTTCCTTTATATCTTGATCTTGTCAAAGTTACGTGGAGGAAGGTGCCACCACCAAGCATCAAGGGTGTTAAGCTGTAG
Protein sequence

>Msa0227470

MFVFTIWQILFSSPSKRWSTQSWWGAIKRVKKKHKCGSQLLKAFMKDPYQSYMCGGIDPFDHGEHGEEIKEKNNRKFKTQYEEDLKKKSNPVGEGNQRMEDSTKNVEKDTTFLAVAKSGVVEIMEELNSKVKACDKKGLLLVAMKNIASELSNGTKDTAYLLAAKHGITEIMRELESKLKSVIHETNSNNENALLIAVKNRQPQVVEGLWKGLSMQTFHSINQQVDKDENTILHLAASTIKHNENTAWRISGAAMQMMWDIKWYKYIKRLVPDHYHHRSNKEGKTPGEIFKEEHKELLDKSIEWLKDTSESCSVVAALVAGVSFATSGSVPGGNDESGKPNFEGQPAFEVFSICSLIGLYFSVTALIMFLSILTSRKQVEDFNRNLPLKLLFGLSSLFVAIVAMFISFIAGHYFVLTDKYTKNGILFYLYIAICLPLTFYGVVQFPLYLDLVKVTWRKVPPPSIKGVKL*