Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296350 | XP_003596543.1 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.41e-143 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296350 | sp|Q9LSQ5|FQR1_ARATH | 90.000 | 200 | 20 | 0 | 1 | 200 | 1 | 200 | 8.09e-134 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296350 | G7ITL8 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 6.75e-144 | 408 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0217180 | Msa0296350 | 0.805306 | 1.422957e-49 | -8.615850e-47 |
| Msa0229360 | Msa0296350 | 0.819956 | 8.846579e-53 | -8.615850e-47 |
| Msa0296350 | Msa0649410 | 0.811097 | 8.302981e-51 | -8.615850e-47 |
| Msa0296350 | Msa0649450 | 0.803954 | 2.723895e-49 | -8.615850e-47 |
| Msa0296350 | Msa1172130 | -0.802294 | 6.005960e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296350 | MtrunA17_Chr2g0318961 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.30e-147 | 408 |
| Msa0296350 | MtrunA17_Chr8g0361451 | 90.148 | 203 | 20 | 0 | 1 | 203 | 1 | 203 | 5.81e-135 | 376 |
| Msa0296350 | MtrunA17_Chr4g0048841 | 83.077 | 195 | 33 | 0 | 6 | 200 | 41 | 235 | 6.87e-119 | 337 |
| Msa0296350 | MtrunA17_Chr2g0280641 | 74.500 | 200 | 51 | 0 | 1 | 200 | 1 | 200 | 1.49e-108 | 309 |
| Msa0296350 | MtrunA17_Chr5g0429671 | 69.347 | 199 | 60 | 1 | 3 | 200 | 4 | 202 | 2.14e-102 | 294 |
| Msa0296350 | MtrunA17_Chr4g0034601 | 68.182 | 198 | 62 | 1 | 3 | 199 | 51 | 248 | 2.41e-94 | 275 |
| Msa0296350 | MtrunA17_Chr5g0403681 | 64.179 | 201 | 71 | 1 | 3 | 202 | 52 | 252 | 9.14e-92 | 268 |
| Msa0296350 | MtrunA17_Chr8g0361461 | 86.667 | 120 | 16 | 0 | 84 | 203 | 1 | 120 | 2.28e-71 | 212 |
| Msa0296350 | MtrunA17_Chr4g0048831 | 82.051 | 117 | 17 | 1 | 84 | 200 | 1 | 113 | 2.03e-64 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296350 | AT5G54500.1 | 90.000 | 200 | 20 | 0 | 1 | 200 | 1 | 200 | 8.22e-135 | 376 |
| Msa0296350 | AT4G27270.1 | 88.500 | 200 | 23 | 0 | 1 | 200 | 1 | 200 | 1.41e-132 | 370 |
| Msa0296350 | AT4G27270.3 | 88.889 | 189 | 21 | 0 | 12 | 200 | 1 | 189 | 5.38e-125 | 351 |
| Msa0296350 | AT4G27270.2 | 88.889 | 189 | 21 | 0 | 12 | 200 | 1 | 189 | 5.38e-125 | 351 |
| Msa0296350 | AT5G54500.2 | 89.506 | 162 | 17 | 0 | 1 | 162 | 1 | 162 | 3.74e-106 | 305 |
| Msa0296350 | AT4G27270.4 | 88.816 | 152 | 17 | 0 | 52 | 203 | 1 | 152 | 6.07e-98 | 281 |
| Msa0296350 | AT4G36750.1 | 67.500 | 200 | 64 | 1 | 3 | 201 | 73 | 272 | 3.54e-97 | 283 |
| Msa0296350 | AT5G58800.1 | 64.878 | 205 | 70 | 2 | 1 | 203 | 1 | 205 | 3.59e-95 | 276 |
| Msa0296350 | AT5G58800.2 | 64.878 | 205 | 70 | 2 | 1 | 203 | 1 | 205 | 3.59e-95 | 276 |
Find 76 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATACGTGTTTATGATTA+TGG | 0.175362 | 2_3:-49521017 | None:intergenic |
| TGCAATCTTTATTGTACATT+AGG | 0.261191 | 2_3:-49524537 | None:intergenic |
| TTTGGCTTCCCAACAAGATT+TGG | 0.281962 | 2_3:+49523427 | Msa0296350:CDS |
| GCAATCTTTATTGTACATTA+GGG | 0.285334 | 2_3:-49524536 | None:intergenic |
| CGTGTTTATGATTATGGTAT+TGG | 0.343467 | 2_3:-49521011 | None:intergenic |
| GCTTTGTATGTGTGTTATAT+AGG | 0.358776 | 2_3:+49524326 | Msa0296350:three_prime_UTR |
| TGCATTGTATCAACCAAGTT+TGG | 0.365269 | 2_3:+49524492 | Msa0296350:three_prime_UTR |
| TGGCAAGATATTTCCCTTGA+TGG | 0.369825 | 2_3:-49524117 | None:intergenic |
| TGTACATTAGGGAATAATAA+AGG | 0.372839 | 2_3:-49524525 | None:intergenic |
| AATACTTACCTGCCATAGTT+TGG | 0.380254 | 2_3:-49522586 | None:intergenic |
| TTGTCCGCCGCCTTGAGAAC+CGG | 0.384299 | 2_3:-49523548 | None:intergenic |
| ATTGTTTGTTCTTGTTAGAC+TGG | 0.386766 | 2_3:+49524395 | Msa0296350:three_prime_UTR |
| TGGAAAGCACAATCACTTGC+AGG | 0.393596 | 2_3:+49523499 | Msa0296350:CDS |
| CACAGGTACTACTCCATGTA+TGG | 0.401496 | 2_3:+49522501 | Msa0296350:intron |
| TGCTGCAATTCAAGCTCACT+TGG | 0.403953 | 2_3:-49524088 | None:intergenic |
| TTCCTTGAGCTTCTTTGTGA+TGG | 0.410437 | 2_3:-49524140 | None:intergenic |
| GTTCCAATCGGTTATACATT+CGG | 0.413022 | 2_3:+49523983 | Msa0296350:CDS |
| ACCGGTGCTGTAGAAGATTC+CGG | 0.421664 | 2_3:-49523530 | None:intergenic |
| ACCTCCTCTTGCAGTGTCTC+AGG | 0.421775 | 2_3:-49523322 | None:intergenic |
| TCACCCTCAGAGAGTTCATT+TGG | 0.426316 | 2_3:-49523394 | None:intergenic |
| ATAGATGTAATACAAAATAT+AGG | 0.436938 | 2_3:-49524432 | None:intergenic |
| GCCATCATTCCAAATCTTGT+TGG | 0.445283 | 2_3:-49523436 | None:intergenic |
| CCATCATTCCAAATCTTGTT+GGG | 0.448149 | 2_3:-49523435 | None:intergenic |
| CCCAACAAGATTTGGAATGA+TGG | 0.449236 | 2_3:+49523435 | Msa0296350:CDS |
| CTTGAGCTTCTTTGTGATGG+TGG | 0.452174 | 2_3:-49524137 | None:intergenic |
| GCGTATGTTCCTGCACCATA+TGG | 0.462132 | 2_3:-49524046 | None:intergenic |
| ACCTTTGAAGACTTCATCAA+TGG | 0.469731 | 2_3:+49521113 | Msa0296350:exon |
| GATGAGTGGTACATCACTCT+TGG | 0.471040 | 2_3:-49523368 | None:intergenic |
| ACTAGCAGAAGAAATAAAGA+AGG | 0.473794 | 2_3:+49522536 | Msa0296350:CDS |
| TAGATGCTACTGGTGGTTTG+TGG | 0.475106 | 2_3:+49523479 | Msa0296350:CDS |
| GGAATGATATTTGTTCCAAT+CGG | 0.481412 | 2_3:+49523971 | Msa0296350:CDS |
| ATATAGGATGCAGTGGTTGT+TGG | 0.483274 | 2_3:+49524342 | Msa0296350:three_prime_UTR |
| GTGAAAGGTGGAAGTCCATA+TGG | 0.494510 | 2_3:+49524031 | Msa0296350:CDS |
| AGGCAATGCTCTACCAAACT+TGG | 0.495046 | 2_3:-49524505 | None:intergenic |
| CGGAGCCGGCATGTTTGAGA+TGG | 0.507130 | 2_3:+49524003 | Msa0296350:CDS |
| CGTTGAGGCCAAACTATGGC+AGG | 0.513992 | 2_3:+49522578 | Msa0296350:CDS |
| TTCTACAGCACCGGTTCTCA+AGG | 0.516974 | 2_3:+49523538 | Msa0296350:CDS |
| TTTCTCCACATGTCCATACA+TGG | 0.519645 | 2_3:-49522514 | None:intergenic |
| AAGGCGTTGAGGCCAAACTA+TGG | 0.520975 | 2_3:+49522574 | Msa0296350:CDS |
| AAAGAAGGGTGCTGCTTCTG+TGG | 0.521591 | 2_3:+49522551 | Msa0296350:CDS |
| ATGAGTGGTACATCACTCTT+GGG | 0.523427 | 2_3:-49523367 | None:intergenic |
| AAGGGTGCTGCTTCTGTGGA+AGG | 0.526860 | 2_3:+49522555 | Msa0296350:CDS |
| GCTTACTGCTATTACTCAGC+TGG | 0.527936 | 2_3:+49523940 | Msa0296350:CDS |
| GCCGGAATCTTCTACAGCAC+CGG | 0.537447 | 2_3:+49523529 | Msa0296350:CDS |
| GAGATGGAGCAAGTGAAAGG+TGG | 0.540398 | 2_3:+49524019 | Msa0296350:CDS |
| ATTACTCAGCTGGTTCATCA+TGG | 0.541080 | 2_3:+49523950 | Msa0296350:CDS |
| AATGTACAATAAAGATTGCA+TGG | 0.544710 | 2_3:+49524540 | Msa0296350:three_prime_UTR |
| GCAGGAACATACGCCGGCGA+TGG | 0.545827 | 2_3:+49524055 | Msa0296350:CDS |
| TGCAGCAAGCATTCCATCAA+GGG | 0.547652 | 2_3:+49524104 | Msa0296350:CDS |
| TCACTTGCAGGCAAGCCTGC+CGG | 0.547692 | 2_3:+49523511 | Msa0296350:CDS |
| TTGCAGCAAGCATTCCATCA+AGG | 0.547761 | 2_3:+49524103 | Msa0296350:CDS |
| ATCGGTTATACATTCGGAGC+CGG | 0.548677 | 2_3:+49523989 | Msa0296350:CDS |
| GGTGGAAGTCCATATGGTGC+AGG | 0.555416 | 2_3:+49524037 | Msa0296350:CDS |
| AATGAACTCTCTGAGGGTGA+TGG | 0.567217 | 2_3:+49523397 | Msa0296350:CDS |
| GCTCCGAATGTATAACCGAT+TGG | 0.573893 | 2_3:-49523986 | None:intergenic |
| TGCTTCTGTGGAAGGCGTTG+AGG | 0.576351 | 2_3:+49522563 | Msa0296350:CDS |
| TTGTTTGTTCTTGTTAGACT+GGG | 0.584237 | 2_3:+49524396 | Msa0296350:three_prime_UTR |
| CACACCAAATGAACTCTCTG+AGG | 0.589409 | 2_3:+49523390 | Msa0296350:CDS |
| GCCATTGATGAAGTCTTCAA+AGG | 0.599704 | 2_3:-49521114 | None:intergenic |
| CTACTCCATGTATGGACATG+TGG | 0.614664 | 2_3:+49522509 | Msa0296350:CDS |
| ACACTGCAAGAGGAGGTGCT+TGG | 0.621981 | 2_3:+49523328 | Msa0296350:CDS |
| GGTACCTGAGACACTGCAAG+AGG | 0.622484 | 2_3:+49523318 | Msa0296350:intron |
| GTGCTGTAGAAGATTCCGGC+AGG | 0.623342 | 2_3:-49523526 | None:intergenic |
| CACCATCACAAAGAAGCTCA+AGG | 0.623802 | 2_3:+49524138 | Msa0296350:CDS |
| GTGTGTTATATAGGATGCAG+TGG | 0.625654 | 2_3:+49524335 | Msa0296350:three_prime_UTR |
| ACCTGAGACACTGCAAGAGG+AGG | 0.632122 | 2_3:+49523321 | Msa0296350:CDS |
| CTAGCAGAAGAAATAAAGAA+GGG | 0.632639 | 2_3:+49522537 | Msa0296350:CDS |
| AGCACCGGTTCTCAAGGCGG+CGG | 0.639495 | 2_3:+49523544 | Msa0296350:CDS |
| ACACCAAATGAACTCTCTGA+GGG | 0.643435 | 2_3:+49523391 | Msa0296350:CDS |
| TTGCTCCATCTCAAACATGC+CGG | 0.649670 | 2_3:-49524008 | None:intergenic |
| TGGCTGTCTTGAACCATCGC+CGG | 0.656734 | 2_3:-49524068 | None:intergenic |
| TTTGAGATGGAGCAAGTGAA+AGG | 0.659849 | 2_3:+49524016 | Msa0296350:CDS |
| AGTTCATTTGGTGTGATGAG+TGG | 0.662932 | 2_3:-49523382 | None:intergenic |
| TACAGCACCGGTTCTCAAGG+CGG | 0.675217 | 2_3:+49523541 | Msa0296350:CDS |
| AGTGGTACATCACTCTTGGG+TGG | 0.680288 | 2_3:-49523364 | None:intergenic |
| TATGGTGCAGGAACATACGC+CGG | 0.719829 | 2_3:+49524049 | Msa0296350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATATAAAAATCAAATAA+AGG | - | chr2_3:49521622-49521641 | None:intergenic | 10.0% |
| !!! | TTTGATTTTTATATTTGATT+TGG | + | chr2_3:49521625-49521644 | Msa0296350:intron | 10.0% |
| !!! | AATATTAATATTTGTTATCT+TGG | - | chr2_3:49523895-49523914 | None:intergenic | 10.0% |
| !!! | TATTAAATTTCAAACCTTTT+TGG | + | chr2_3:49521357-49521376 | Msa0296350:intron | 15.0% |
| !!! | TATTTGATTTGGATTAATAT+TGG | + | chr2_3:49521636-49521655 | Msa0296350:intron | 15.0% |
| !!! | ATTTGACAGTTAAAAATTTT+GGG | - | chr2_3:49521987-49522006 | None:intergenic | 15.0% |
| !!! | TATTTGACAGTTAAAAATTT+TGG | - | chr2_3:49521988-49522007 | None:intergenic | 15.0% |
| !! | ATAGATGTAATACAAAATAT+AGG | - | chr2_3:49524435-49524454 | None:intergenic | 15.0% |
| !! | TATATACGTGTTTATGATTA+TGG | - | chr2_3:49521020-49521039 | None:intergenic | 20.0% |
| !! | GAAAGTTTATGATAGAAAAA+TGG | - | chr2_3:49521060-49521079 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTTTGTACTG+TGG | + | chr2_3:49521269-49521288 | Msa0296350:intron | 20.0% |
| !!! | AAGATTAGATTTTGTTTACT+GGG | + | chr2_3:49521311-49521330 | Msa0296350:intron | 20.0% |
| !!! | GTTTTGTTTAATTCTGAAAT+GGG | + | chr2_3:49521333-49521352 | Msa0296350:intron | 20.0% |
| !!! | ACTGTGATTTTTTTTTCTAT+AGG | + | chr2_3:49521414-49521433 | Msa0296350:intron | 20.0% |
| !!! | AATTGAAATTATGCCATTTA+AGG | + | chr2_3:49521674-49521693 | Msa0296350:intron | 20.0% |
| !! | TTATTAACAAACCAAATAGA+AGG | - | chr2_3:49522092-49522111 | None:intergenic | 20.0% |
| !! | ATAAGTTTACTTGAAACTTA+AGG | - | chr2_3:49522235-49522254 | None:intergenic | 20.0% |
| !! | TATTGCATTACACATTATTA+TGG | + | chr2_3:49522314-49522333 | Msa0296350:intron | 20.0% |
| !!! | CATTTTTAATTAAAACTTGC+AGG | - | chr2_3:49522464-49522483 | None:intergenic | 20.0% |
| !!! | TTATTTTATGTTGTTTTCAC+AGG | + | chr2_3:49522484-49522503 | Msa0296350:intron | 20.0% |
| !! | TCTTAAAGCTAAAAACTAAA+AGG | - | chr2_3:49523080-49523099 | None:intergenic | 20.0% |
| !! | ACTTACAAAATCAAATAAGT+CGG | - | chr2_3:49523229-49523248 | None:intergenic | 20.0% |
| !!! | TTATTTGATTTTGTAAGTGA+AGG | + | chr2_3:49523231-49523250 | Msa0296350:intron | 20.0% |
| !!! | ACTATTTTCATAAGTATTCT+TGG | + | chr2_3:49523736-49523755 | Msa0296350:intron | 20.0% |
| !!! | AATATTTGTTATCTTGGTAA+TGG | - | chr2_3:49523889-49523908 | None:intergenic | 20.0% |
| !! | TAAAAAATGGTAAATGGTAA+GGG | - | chr2_3:49524236-49524255 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTGTAAATTGGA+AGG | - | chr2_3:49524305-49524324 | None:intergenic | 20.0% |
| !!! | AGCATTTTCTTTTTGTAAAT+TGG | - | chr2_3:49524309-49524328 | None:intergenic | 20.0% |
| ! | TTATGATAGAAAAATGGTGA+GGG | - | chr2_3:49521054-49521073 | None:intergenic | 25.0% |
| ! | TTTATGATAGAAAAATGGTG+AGG | - | chr2_3:49521055-49521074 | None:intergenic | 25.0% |
| !!! | TTTGTGATTCGATTTTTTGA+AGG | - | chr2_3:49521082-49521101 | None:intergenic | 25.0% |
| !!! | CAAGATTAGATTTTGTTTAC+TGG | + | chr2_3:49521310-49521329 | Msa0296350:intron | 25.0% |
| !!! | GGTTTTGTTTAATTCTGAAA+TGG | + | chr2_3:49521332-49521351 | Msa0296350:intron | 25.0% |
| !!! | TTTTTCTATAGGAAGAGTAT+TGG | + | chr2_3:49521425-49521444 | Msa0296350:intron | 25.0% |
| !!! | ATTGGTTTTCTTTGATCTTT+TGG | + | chr2_3:49521443-49521462 | Msa0296350:intron | 25.0% |
| !!! | TGTTTCTGTTTTTTCAAGAA+TGG | + | chr2_3:49521473-49521492 | Msa0296350:intron | 25.0% |
| ! | CAAATAAAGGGAAACAAATT+TGG | - | chr2_3:49521609-49521628 | None:intergenic | 25.0% |
| !!! | AAATATGTTTGTTGTCAACT+AGG | + | chr2_3:49522003-49522022 | Msa0296350:intron | 25.0% |
| ! | AACTATGAAATCCTTCTATT+TGG | + | chr2_3:49522078-49522097 | Msa0296350:intron | 25.0% |
| ! | ATAGATCACATAAATGTGTT+AGG | + | chr2_3:49522701-49522720 | Msa0296350:intron | 25.0% |
| !! | AGCTCTTCATAATAGTTTTT+CGG | - | chr2_3:49522957-49522976 | None:intergenic | 25.0% |
| ! | TAAGTACTTGTGAAATTGTT+TGG | - | chr2_3:49523012-49523031 | None:intergenic | 25.0% |
| ! | CTAAAAACTAAAAGGATATG+GGG | - | chr2_3:49523072-49523091 | None:intergenic | 25.0% |
| ! | GCTAAAAACTAAAAGGATAT+GGG | - | chr2_3:49523073-49523092 | None:intergenic | 25.0% |
| ! | AGCTAAAAACTAAAAGGATA+TGG | - | chr2_3:49523074-49523093 | None:intergenic | 25.0% |
| ! | TCTATATAATTGCGAAATGA+AGG | + | chr2_3:49523104-49523123 | Msa0296350:intron | 25.0% |
| ! | CAAATTTAGCAAGACTATTA+TGG | - | chr2_3:49523196-49523215 | None:intergenic | 25.0% |
| ! | AGTCAAATTATGTTCGTATA+AGG | + | chr2_3:49523708-49523727 | Msa0296350:intron | 25.0% |
| !!! | AGGGTTTTAAAGCAATATTT+CGG | - | chr2_3:49524217-49524236 | None:intergenic | 25.0% |
| ! | CTAAAAAATGGTAAATGGTA+AGG | - | chr2_3:49524237-49524256 | None:intergenic | 25.0% |
| ! | GAAGTCTAAAAAATGGTAAA+TGG | - | chr2_3:49524242-49524261 | None:intergenic | 25.0% |
| ! | TATATGCGAAGTCTAAAAAA+TGG | - | chr2_3:49524249-49524268 | None:intergenic | 25.0% |
| ! | TGTACATTAGGGAATAATAA+AGG | - | chr2_3:49524528-49524547 | None:intergenic | 25.0% |
| ! | GCAATCTTTATTGTACATTA+GGG | - | chr2_3:49524539-49524558 | None:intergenic | 25.0% |
| ! | TGCAATCTTTATTGTACATT+AGG | - | chr2_3:49524540-49524559 | None:intergenic | 25.0% |
| ! | AATGTACAATAAAGATTGCA+TGG | + | chr2_3:49524540-49524559 | Msa0296350:three_prime_UTR | 25.0% |
| CGTGTTTATGATTATGGTAT+TGG | - | chr2_3:49521014-49521033 | None:intergenic | 30.0% | |
| AATAAGACAGCAATAACAAC+AGG | - | chr2_3:49521251-49521270 | None:intergenic | 30.0% | |
| ! | ACCTTTTTGGATTTTTCCTT+TGG | + | chr2_3:49521370-49521389 | Msa0296350:intron | 30.0% |
| ACCAAAGGAAAAATCCAAAA+AGG | - | chr2_3:49521374-49521393 | None:intergenic | 30.0% | |
| ACAACAATACATTAGACCAA+AGG | - | chr2_3:49521389-49521408 | None:intergenic | 30.0% | |
| !!! | GCATTTTGTTTGGTTCTAAT+TGG | + | chr2_3:49521554-49521573 | Msa0296350:intron | 30.0% |
| !!! | ATTTGGAAGTGTGTTTTTTG+TGG | - | chr2_3:49521592-49521611 | None:intergenic | 30.0% |
| TCTCACAAAGATCACATATT+TGG | + | chr2_3:49521732-49521751 | Msa0296350:intron | 30.0% | |
| CTCACAAAGATCACATATTT+GGG | + | chr2_3:49521733-49521752 | Msa0296350:intron | 30.0% | |
| ! | CATCAAGAAAGTGTGAATAT+TGG | + | chr2_3:49521811-49521830 | Msa0296350:intron | 30.0% |
| ATGAAGAATAGCAATGAGTT+GGG | + | chr2_3:49521860-49521879 | Msa0296350:intron | 30.0% | |
| TTCAATTTAGAAAGAACTCG+AGG | + | chr2_3:49522036-49522055 | Msa0296350:intron | 30.0% | |
| TCAATTTAGAAAGAACTCGA+GGG | + | chr2_3:49522037-49522056 | Msa0296350:intron | 30.0% | |
| TTCATGAGTTCACTTTAGTT+AGG | - | chr2_3:49522435-49522454 | None:intergenic | 30.0% | |
| ACTAGCAGAAGAAATAAAGA+AGG | + | chr2_3:49522536-49522555 | Msa0296350:CDS | 30.0% | |
| CTAGCAGAAGAAATAAAGAA+GGG | + | chr2_3:49522537-49522556 | Msa0296350:CDS | 30.0% | |
| TGCAGAAGGAAATGTAAATT+TGG | - | chr2_3:49522619-49522638 | None:intergenic | 30.0% | |
| !! | TGGTTGGTTAAATGTTTTGT+TGG | + | chr2_3:49522782-49522801 | Msa0296350:intron | 30.0% |
| TAGAGTTGTTTATCCAAACA+GGG | - | chr2_3:49522833-49522852 | None:intergenic | 30.0% | |
| ATAGAGTTGTTTATCCAAAC+AGG | - | chr2_3:49522834-49522853 | None:intergenic | 30.0% | |
| AAGAACTATTCAGAGATCAA+AGG | - | chr2_3:49523141-49523160 | None:intergenic | 30.0% | |
| !! | CTCATTATTCTGGTCTTATT+TGG | + | chr2_3:49523596-49523615 | Msa0296350:intron | 30.0% |
| ! | TCAAATAAGTCGATTCAAAC+TGG | + | chr2_3:49523848-49523867 | Msa0296350:intron | 30.0% |
| ! | AAACATTTGGAATCCATTAC+AGG | + | chr2_3:49523918-49523937 | Msa0296350:intron | 30.0% |
| GGAATGATATTTGTTCCAAT+CGG | + | chr2_3:49523971-49523990 | Msa0296350:CDS | 30.0% | |
| !!! | AGGAATTTTTTTGCAGAAAC+AGG | - | chr2_3:49524285-49524304 | None:intergenic | 30.0% |
| GCTTTGTATGTGTGTTATAT+AGG | + | chr2_3:49524326-49524345 | Msa0296350:three_prime_UTR | 30.0% | |
| ATTGTTTGTTCTTGTTAGAC+TGG | + | chr2_3:49524395-49524414 | Msa0296350:three_prime_UTR | 30.0% | |
| TTGTTTGTTCTTGTTAGACT+GGG | + | chr2_3:49524396-49524415 | Msa0296350:three_prime_UTR | 30.0% | |
| ! | ACCTTTGAAGACTTCATCAA+TGG | + | chr2_3:49521113-49521132 | Msa0296350:exon | 35.0% |
| ! | TCTGAATTGTTGATGAGTGA+TGG | + | chr2_3:49521497-49521516 | Msa0296350:intron | 35.0% |
| !!! | GGCTTGTTTTGCATTTTGTT+TGG | + | chr2_3:49521544-49521563 | Msa0296350:intron | 35.0% |
| GTACACAAAGAGTCCTTAAA+TGG | - | chr2_3:49521690-49521709 | None:intergenic | 35.0% | |
| GATGAAGAATAGCAATGAGT+TGG | + | chr2_3:49521859-49521878 | Msa0296350:intron | 35.0% | |
| TGAAGAATAGCAATGAGTTG+GGG | + | chr2_3:49521861-49521880 | Msa0296350:intron | 35.0% | |
| ! | CTTTTATGAACCAAGCAATC+GGG | - | chr2_3:49521913-49521932 | None:intergenic | 35.0% |
| ! | CCTTTTATGAACCAAGCAAT+CGG | - | chr2_3:49521914-49521933 | None:intergenic | 35.0% |
| CAGTTGAAACTTGAAAGCAA+TGG | - | chr2_3:49522122-49522141 | None:intergenic | 35.0% | |
| TACTTGAAACTTAAGGTCCA+GGG | - | chr2_3:49522228-49522247 | None:intergenic | 35.0% | |
| TTACTTGAAACTTAAGGTCC+AGG | - | chr2_3:49522229-49522248 | None:intergenic | 35.0% | |
| ATCGTTTCTCAAAAGAAGTG+TGG | + | chr2_3:49522253-49522272 | Msa0296350:intron | 35.0% | |
| ACCAGTTAGTGAGTAATACT+AGG | + | chr2_3:49522284-49522303 | Msa0296350:intron | 35.0% | |
| ACCTAGTATTACTCACTAAC+TGG | - | chr2_3:49522288-49522307 | None:intergenic | 35.0% | |
| AATACTTACCTGCCATAGTT+TGG | - | chr2_3:49522589-49522608 | None:intergenic | 35.0% | |
| CAATATCAGTTCATGAGCTA+AGG | + | chr2_3:49522667-49522686 | Msa0296350:intron | 35.0% | |
| AGTGTAATTAGCGTTACACA+AGG | - | chr2_3:49522740-49522759 | None:intergenic | 35.0% | |
| TATGCCATTCAACTGTTACA+TGG | + | chr2_3:49522762-49522781 | Msa0296350:intron | 35.0% | |
| CCATCATTCCAAATCTTGTT+GGG | - | chr2_3:49523438-49523457 | None:intergenic | 35.0% | |
| ! | AAAGCTTTTCTAGATGCTAC+TGG | + | chr2_3:49523469-49523488 | Msa0296350:CDS | 35.0% |
| !! | TGGTAATGGAGTAAGAAACA+AGG | - | chr2_3:49523875-49523894 | None:intergenic | 35.0% |
| TAATAGCAGTAAGCCTGTAA+TGG | - | chr2_3:49523934-49523953 | None:intergenic | 35.0% | |
| GTTCCAATCGGTTATACATT+CGG | + | chr2_3:49523983-49524002 | Msa0296350:CDS | 35.0% | |
| TGCATTGTATCAACCAAGTT+TGG | + | chr2_3:49524492-49524511 | Msa0296350:three_prime_UTR | 35.0% | |
| GCCATTGATGAAGTCTTCAA+AGG | - | chr2_3:49521117-49521136 | None:intergenic | 40.0% | |
| ! | TGATGGCATAGAATCCCTTT+TGG | + | chr2_3:49521514-49521533 | Msa0296350:intron | 40.0% |
| !! | AGAATCCCTTTTGGTGTGTT+TGG | + | chr2_3:49521523-49521542 | Msa0296350:intron | 40.0% |
| ACAAGCCAAACACACCAAAA+GGG | - | chr2_3:49521531-49521550 | None:intergenic | 40.0% | |
| AACAAGCCAAACACACCAAA+AGG | - | chr2_3:49521532-49521551 | None:intergenic | 40.0% | |
| !!! | AAGTGTGTTTTTTGTGGCAG+AGG | - | chr2_3:49521586-49521605 | None:intergenic | 40.0% |
| !! | CGAGGGCATTACATTAACAT+CGG | - | chr2_3:49521889-49521908 | None:intergenic | 40.0% |
| CCGATTGCTTGGTTCATAAA+AGG | + | chr2_3:49521911-49521930 | Msa0296350:intron | 40.0% | |
| TGATCGGTCAACTGCTTAAA+TGG | - | chr2_3:49522196-49522215 | None:intergenic | 40.0% | |
| ATTTAAGCAGTTGACCGATC+AGG | + | chr2_3:49522195-49522214 | Msa0296350:intron | 40.0% | |
| TTTAAGCAGTTGACCGATCA+GGG | + | chr2_3:49522196-49522215 | Msa0296350:intron | 40.0% | |
| GTTCATAGTCATTTCTCTGC+TGG | + | chr2_3:49522354-49522373 | Msa0296350:intron | 40.0% | |
| TTTCTCCACATGTCCATACA+TGG | - | chr2_3:49522517-49522536 | None:intergenic | 40.0% | |
| GACTATATGACGTCATGCTA+TGG | - | chr2_3:49522644-49522663 | None:intergenic | 40.0% | |
| CCAACCATGTAACAGTTGAA+TGG | - | chr2_3:49522769-49522788 | None:intergenic | 40.0% | |
| CCATTCAACTGTTACATGGT+TGG | + | chr2_3:49522766-49522785 | Msa0296350:intron | 40.0% | |
| TGTTTATCCAAACAGGGTCA+TGG | - | chr2_3:49522827-49522846 | None:intergenic | 40.0% | |
| TCGACTAAACCAATCCAAAC+AGG | + | chr2_3:49523046-49523065 | Msa0296350:intron | 40.0% | |
| ATGAGTGGTACATCACTCTT+GGG | - | chr2_3:49523370-49523389 | None:intergenic | 40.0% | |
| !! | AGTTCATTTGGTGTGATGAG+TGG | - | chr2_3:49523385-49523404 | None:intergenic | 40.0% |
| ACACCAAATGAACTCTCTGA+GGG | + | chr2_3:49523391-49523410 | Msa0296350:CDS | 40.0% | |
| ! | TTTGGCTTCCCAACAAGATT+TGG | + | chr2_3:49523427-49523446 | Msa0296350:CDS | 40.0% |
| ! | CCCAACAAGATTTGGAATGA+TGG | + | chr2_3:49523435-49523454 | Msa0296350:CDS | 40.0% |
| GCCATCATTCCAAATCTTGT+TGG | - | chr2_3:49523439-49523458 | None:intergenic | 40.0% | |
| GCACATCTGTCTCATTATTC+TGG | + | chr2_3:49523586-49523605 | Msa0296350:intron | 40.0% | |
| ACAGCATTTGTGTGACTGTT+TGG | - | chr2_3:49523814-49523833 | None:intergenic | 40.0% | |
| ! | ATTACTCAGCTGGTTCATCA+TGG | + | chr2_3:49523950-49523969 | Msa0296350:CDS | 40.0% |
| ! | TTTGAGATGGAGCAAGTGAA+AGG | + | chr2_3:49524016-49524035 | Msa0296350:CDS | 40.0% |
| TGGCAAGATATTTCCCTTGA+TGG | - | chr2_3:49524120-49524139 | None:intergenic | 40.0% | |
| TTCCTTGAGCTTCTTTGTGA+TGG | - | chr2_3:49524143-49524162 | None:intergenic | 40.0% | |
| GTGTGTTATATAGGATGCAG+TGG | + | chr2_3:49524335-49524354 | Msa0296350:three_prime_UTR | 40.0% | |
| ATATAGGATGCAGTGGTTGT+TGG | + | chr2_3:49524342-49524361 | Msa0296350:three_prime_UTR | 40.0% | |
| !!! | GTGTTTTTTGTGGCAGAGGA+TGG | - | chr2_3:49521582-49521601 | None:intergenic | 45.0% |
| TTAGAAAGAACTCGAGGGAG+AGG | + | chr2_3:49522042-49522061 | Msa0296350:intron | 45.0% | |
| CCAAAGCTATCCTTCGTGTA+CGG | + | chr2_3:49522158-49522177 | Msa0296350:intron | 45.0% | |
| CACAGGTACTACTCCATGTA+TGG | + | chr2_3:49522501-49522520 | Msa0296350:intron | 45.0% | |
| CTACTCCATGTATGGACATG+TGG | + | chr2_3:49522509-49522528 | Msa0296350:CDS | 45.0% | |
| GTCATGCTATGGAATGCAGA+AGG | - | chr2_3:49522633-49522652 | None:intergenic | 45.0% | |
| CAGGGTCATGGTAACAACAA+AGG | - | chr2_3:49522815-49522834 | None:intergenic | 45.0% | |
| GTTGTTACCATGACCCTGTT+TGG | + | chr2_3:49522817-49522836 | Msa0296350:intron | 45.0% | |
| AAAAGGATATGGGGCCTGTT+TGG | - | chr2_3:49523063-49523082 | None:intergenic | 45.0% | |
| GATGAGTGGTACATCACTCT+TGG | - | chr2_3:49523371-49523390 | None:intergenic | 45.0% | |
| CACACCAAATGAACTCTCTG+AGG | + | chr2_3:49523390-49523409 | Msa0296350:CDS | 45.0% | |
| TCACCCTCAGAGAGTTCATT+TGG | - | chr2_3:49523397-49523416 | None:intergenic | 45.0% | |
| ! | AATGAACTCTCTGAGGGTGA+TGG | + | chr2_3:49523397-49523416 | Msa0296350:CDS | 45.0% |
| !!! | GAGGGTGATGGTTTTGTCTT+TGG | + | chr2_3:49523409-49523428 | Msa0296350:CDS | 45.0% |
| ! | GCTTTTCTAGATGCTACTGG+TGG | + | chr2_3:49523472-49523491 | Msa0296350:CDS | 45.0% |
| TAGATGCTACTGGTGGTTTG+TGG | + | chr2_3:49523479-49523498 | Msa0296350:CDS | 45.0% | |
| ! | TGGAAAGCACAATCACTTGC+AGG | + | chr2_3:49523499-49523518 | Msa0296350:CDS | 45.0% |
| GCTTACTGCTATTACTCAGC+TGG | + | chr2_3:49523940-49523959 | Msa0296350:CDS | 45.0% | |
| GCTCCGAATGTATAACCGAT+TGG | - | chr2_3:49523989-49524008 | None:intergenic | 45.0% | |
| ATCGGTTATACATTCGGAGC+CGG | + | chr2_3:49523989-49524008 | Msa0296350:CDS | 45.0% | |
| TTGCTCCATCTCAAACATGC+CGG | - | chr2_3:49524011-49524030 | None:intergenic | 45.0% | |
| GTGAAAGGTGGAAGTCCATA+TGG | + | chr2_3:49524031-49524050 | Msa0296350:CDS | 45.0% | |
| TGCTGCAATTCAAGCTCACT+TGG | - | chr2_3:49524091-49524110 | None:intergenic | 45.0% | |
| TTGCAGCAAGCATTCCATCA+AGG | + | chr2_3:49524103-49524122 | Msa0296350:CDS | 45.0% | |
| TGCAGCAAGCATTCCATCAA+GGG | + | chr2_3:49524104-49524123 | Msa0296350:CDS | 45.0% | |
| CTTGAGCTTCTTTGTGATGG+TGG | - | chr2_3:49524140-49524159 | None:intergenic | 45.0% | |
| CACCATCACAAAGAAGCTCA+AGG | + | chr2_3:49524138-49524157 | Msa0296350:CDS | 45.0% | |
| AGGCAATGCTCTACCAAACT+TGG | - | chr2_3:49524508-49524527 | None:intergenic | 45.0% | |
| !! | AAATATAAAAATCAAATAAA+GGG | - | chr2_3:49521621-49521640 | None:intergenic | 5.0% |
| !!! | TATTAATATTTTAAAACATT+TGG | + | chr2_3:49523905-49523924 | Msa0296350:intron | 5.0% |
| CCGTACACGAAGGATAGCTT+TGG | - | chr2_3:49522161-49522180 | None:intergenic | 50.0% | |
| !! | AAAGAAGGGTGCTGCTTCTG+TGG | + | chr2_3:49522551-49522570 | Msa0296350:CDS | 50.0% |
| !! | AAGGCGTTGAGGCCAAACTA+TGG | + | chr2_3:49522574-49522593 | Msa0296350:CDS | 50.0% |
| GATATGGGGCCTGTTTGGAT+TGG | - | chr2_3:49523058-49523077 | None:intergenic | 50.0% | |
| ACTGTACTTAACCTGCGAGC+AGG | + | chr2_3:49523297-49523316 | Msa0296350:intron | 50.0% | |
| AGTGGTACATCACTCTTGGG+TGG | - | chr2_3:49523367-49523386 | None:intergenic | 50.0% | |
| !! | ACCGGTGCTGTAGAAGATTC+CGG | - | chr2_3:49523533-49523552 | None:intergenic | 50.0% |
| !! | TTCTACAGCACCGGTTCTCA+AGG | + | chr2_3:49523538-49523557 | Msa0296350:CDS | 50.0% |
| GAGATGGAGCAAGTGAAAGG+TGG | + | chr2_3:49524019-49524038 | Msa0296350:CDS | 50.0% | |
| GCGTATGTTCCTGCACCATA+TGG | - | chr2_3:49524049-49524068 | None:intergenic | 50.0% | |
| TATGGTGCAGGAACATACGC+CGG | + | chr2_3:49524049-49524068 | Msa0296350:CDS | 50.0% | |
| GAACCAAGCAATCGGGACGA+GGG | - | chr2_3:49521906-49521925 | None:intergenic | 55.0% | |
| TGAACCAAGCAATCGGGACG+AGG | - | chr2_3:49521907-49521926 | None:intergenic | 55.0% | |
| GAAAGAACTCGAGGGAGAGG+TGG | + | chr2_3:49522045-49522064 | Msa0296350:intron | 55.0% | |
| CGAGGGAGAGGTGGTAGAAA+AGG | + | chr2_3:49522054-49522073 | Msa0296350:intron | 55.0% | |
| CTCAGTTACGCCGTACACGA+AGG | - | chr2_3:49522171-49522190 | None:intergenic | 55.0% | |
| TCCAGGGTTCGATCCCTGAT+CGG | - | chr2_3:49522212-49522231 | None:intergenic | 55.0% | |
| !! | AAGGGTGCTGCTTCTGTGGA+AGG | + | chr2_3:49522555-49522574 | Msa0296350:CDS | 55.0% |
| !! | TGCTTCTGTGGAAGGCGTTG+AGG | + | chr2_3:49522563-49522582 | Msa0296350:CDS | 55.0% |
| CGTTGAGGCCAAACTATGGC+AGG | + | chr2_3:49522578-49522597 | Msa0296350:CDS | 55.0% | |
| GGTACCTGAGACACTGCAAG+AGG | + | chr2_3:49523318-49523337 | Msa0296350:intron | 55.0% | |
| ACCTGAGACACTGCAAGAGG+AGG | + | chr2_3:49523321-49523340 | Msa0296350:CDS | 55.0% | |
| ACCTCCTCTTGCAGTGTCTC+AGG | - | chr2_3:49523325-49523344 | None:intergenic | 55.0% | |
| !! | ACACTGCAAGAGGAGGTGCT+TGG | + | chr2_3:49523328-49523347 | Msa0296350:CDS | 55.0% |
| GTGCTGTAGAAGATTCCGGC+AGG | - | chr2_3:49523529-49523548 | None:intergenic | 55.0% | |
| GCCGGAATCTTCTACAGCAC+CGG | + | chr2_3:49523529-49523548 | Msa0296350:CDS | 55.0% | |
| !! | TACAGCACCGGTTCTCAAGG+CGG | + | chr2_3:49523541-49523560 | Msa0296350:CDS | 55.0% |
| GGTGGAAGTCCATATGGTGC+AGG | + | chr2_3:49524037-49524056 | Msa0296350:CDS | 55.0% | |
| TGGCTGTCTTGAACCATCGC+CGG | - | chr2_3:49524071-49524090 | None:intergenic | 55.0% | |
| ATGCCCTCGTCCCGATTGCT+TGG | + | chr2_3:49521900-49521919 | Msa0296350:intron | 60.0% | |
| ACCGATCAGGGATCGAACCC+TGG | + | chr2_3:49522208-49522227 | Msa0296350:intron | 60.0% | |
| TGTCTCAGGTACCTGCTCGC+AGG | - | chr2_3:49523311-49523330 | None:intergenic | 60.0% | |
| TCACTTGCAGGCAAGCCTGC+CGG | + | chr2_3:49523511-49523530 | Msa0296350:CDS | 60.0% | |
| TTGTCCGCCGCCTTGAGAAC+CGG | - | chr2_3:49523551-49523570 | None:intergenic | 60.0% | |
| CGGAGCCGGCATGTTTGAGA+TGG | + | chr2_3:49524003-49524022 | Msa0296350:CDS | 60.0% | |
| !! | AGCACCGGTTCTCAAGGCGG+CGG | + | chr2_3:49523544-49523563 | Msa0296350:CDS | 65.0% |
| GCAGGAACATACGCCGGCGA+TGG | + | chr2_3:49524055-49524074 | Msa0296350:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 49521009 | 49524583 | 49521009 | ID=Msa0296350;Name=Msa0296350 |
| chr2_3 | mRNA | 49521009 | 49524583 | 49521009 | ID=Msa0296350-mRNA-1;Parent=Msa0296350;Name=Msa0296350-mRNA-1;_AED=0.14;_eAED=0.14;_QI=123|1|1|1|1|1|4|412|203 |
| chr2_3 | exon | 49521009 | 49521154 | 49521009 | ID=Msa0296350-mRNA-1:exon:15559;Parent=Msa0296350-mRNA-1 |
| chr2_3 | exon | 49522506 | 49522599 | 49522506 | ID=Msa0296350-mRNA-1:exon:15560;Parent=Msa0296350-mRNA-1 |
| chr2_3 | exon | 49523319 | 49523581 | 49523319 | ID=Msa0296350-mRNA-1:exon:15561;Parent=Msa0296350-mRNA-1 |
| chr2_3 | exon | 49523940 | 49524583 | 49523940 | ID=Msa0296350-mRNA-1:exon:15562;Parent=Msa0296350-mRNA-1 |
| chr2_3 | five_prime_UTR | 49521009 | 49521131 | 49521009 | ID=Msa0296350-mRNA-1:five_prime_utr;Parent=Msa0296350-mRNA-1 |
| chr2_3 | CDS | 49521132 | 49521154 | 49521132 | ID=Msa0296350-mRNA-1:cds;Parent=Msa0296350-mRNA-1 |
| chr2_3 | CDS | 49522506 | 49522599 | 49522506 | ID=Msa0296350-mRNA-1:cds;Parent=Msa0296350-mRNA-1 |
| chr2_3 | CDS | 49523319 | 49523581 | 49523319 | ID=Msa0296350-mRNA-1:cds;Parent=Msa0296350-mRNA-1 |
| chr2_3 | CDS | 49523940 | 49524171 | 49523940 | ID=Msa0296350-mRNA-1:cds;Parent=Msa0296350-mRNA-1 |
| chr2_3 | three_prime_UTR | 49524172 | 49524583 | 49524172 | ID=Msa0296350-mRNA-1:three_prime_utr;Parent=Msa0296350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
