AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649410 MtrunA17_Chr4g0041371 98.349 424 7 0 1 424 1 424 0.0 877
Msa0649410 MtrunA17_Chr4g0041351 92.437 238 18 0 187 424 1 238 4.06e-168 471
Msa0649410 MtrunA17_Chr3g0139821 51.378 399 192 1 25 421 56 454 4.94e-147 426
Msa0649410 MtrunA17_Chr1g0149721 48.354 395 202 2 25 417 63 457 7.58e-136 397
Msa0649410 MtrunA17_Chr4g0041361 85.987 157 16 2 1 156 1 152 3.50e-92 275
Msa0649410 MtrunA17_Chr4g0005811 54.167 48 22 0 296 343 24 71 4.04e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649410 AT2G30970.1 78.873 426 88 1 1 424 5 430 0.0 720
Msa0649410 AT2G30970.2 78.873 426 88 1 1 424 5 430 0.0 720
Msa0649410 AT5G19550.1 50.503 398 195 1 23 418 1 398 2.55e-147 425
Msa0649410 AT5G11520.1 51.741 402 192 1 25 424 47 448 3.30e-147 426
Msa0649410 AT1G62800.1 47.619 399 209 0 23 421 1 399 8.02e-138 400
Msa0649410 AT1G62800.2 47.382 401 209 1 23 421 1 401 2.77e-136 397
Msa0649410 AT4G31990.1 46.135 414 220 3 6 417 33 445 7.76e-134 392
Msa0649410 AT4G31990.2 46.135 414 220 3 6 417 33 445 7.76e-134 392
Msa0649410 AT4G31990.3 46.135 414 220 3 6 417 33 445 1.77e-133 392
Msa0649410 AT4G31990.4 47.342 395 206 2 25 417 46 440 2.86e-133 390
Msa0649410 AT1G62800.3 47.493 339 176 1 23 359 1 339 2.10e-112 333

Find 133 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATGATGGTCATTTATT+AGG 0.163800 4_3:-56051846 Msa0649410:CDS
GCTGCAGTTCAGGCTTTATC+TGG 0.203926 4_3:-56052730 Msa0649410:CDS
AACTACACTACGAGAGAATT+TGG 0.231543 4_3:-56050759 Msa0649410:CDS
ACTCCAACATTAACTTTGTT+TGG 0.243943 4_3:+56054801 None:intergenic
GTTGCATAATTGAATAATTT+AGG 0.248563 4_3:+56050180 None:intergenic
TACCTCAGAAGTAGAATTAT+TGG 0.248615 4_3:-56050126 Msa0649410:three_prime_UTR
TACAGTTACAAAGTTAGATT+TGG 0.270790 4_3:-56055029 Msa0649410:five_prime_UTR
AAATCCAACCCTTTAGATTC+AGG 0.281836 4_3:+56052422 None:intergenic
TGGGAACTGGTATATAGATT+TGG 0.284181 4_3:+56052653 None:intergenic
TGGACTGATGGATGACATTA+AGG 0.291323 4_3:-56052396 Msa0649410:intron
AAAACTTGACTCACATGAAT+TGG 0.295790 4_3:+56054399 None:intergenic
ACGAGAGAATTTGGAAAATC+TGG 0.306043 4_3:-56050750 Msa0649410:CDS
GATTCATGTCTTCGTGGTTC+AGG 0.309930 4_3:-56054890 Msa0649410:CDS
TGAGAAGTAGATTGAATAAG+AGG 0.318062 4_3:-56050018 Msa0649410:three_prime_UTR
TAGTAACGGTATGTCTTTAT+TGG 0.320777 4_3:+56052449 None:intergenic
AGCCACAACTTCTTCAAGTC+TGG 0.343190 4_3:+56051353 None:intergenic
TACAGCAATCCACCTCTTCA+TGG 0.366324 4_3:-56051407 Msa0649410:CDS
GAAGCAGAGAGGAGAATTGC+AGG 0.369047 4_3:-56054425 Msa0649410:CDS
TTAGTCTCAATCAACTTATA+AGG 0.370879 4_3:+56049873 None:intergenic
GTCAAACGATCAACCTGTTC+TGG 0.382951 4_3:+56050426 None:intergenic
AATTATAACAGGGCGCATAT+CGG 0.387711 4_3:-56054487 Msa0649410:intron
TGACTCGTAATGGTCGTATA+AGG 0.390208 4_3:-56050383 Msa0649410:intron
ATTACAGCCACCATAACATT+TGG 0.393881 4_3:-56052487 Msa0649410:intron
GGGAACTGGTATATAGATTT+GGG 0.398341 4_3:+56052654 None:intergenic
TAAACGAATAGCTGCAGTTC+AGG 0.408353 4_3:-56052740 Msa0649410:CDS
TCAACGGACAATTTCTCAAC+CGG 0.420413 4_3:-56054932 Msa0649410:CDS
CATATTTACATGACTCGTAA+TGG 0.427237 4_3:-56050393 Msa0649410:CDS
CAGCATCTCTCCAAATGTTA+TGG 0.427253 4_3:+56052477 None:intergenic
GACTTGGACCAGGTGGGAAC+TGG 0.436048 4_3:+56052640 None:intergenic
CTTGTCGTTTCAACTGTCCT+TGG 0.436753 4_3:-56051380 Msa0649410:CDS
CAGTATGGCTGGTCTTAATA+CGG 0.443084 4_3:-56050251 Msa0649410:CDS
GAATCACTGAAGCTGGCATA+TGG 0.444094 4_3:-56052787 Msa0649410:CDS
ATTATAACAGGGCGCATATC+GGG 0.453076 4_3:-56054486 Msa0649410:intron
CGAGAGAATTTGGAAAATCT+GGG 0.454321 4_3:-56050749 Msa0649410:CDS
GTTATGGCAGACCGCATCAT+TGG 0.454392 4_3:-56050788 Msa0649410:CDS
TGGTATATAGATTTGGGTGT+TGG 0.456286 4_3:+56052660 None:intergenic
TATGATTGTTTGCAGGCTAA+AGG 0.462192 4_3:-56051951 Msa0649410:intron
TGGATTGCTGTACATGGGTC+TGG 0.465606 4_3:+56051418 None:intergenic
TGCATTCAACTGAACCTGAT+TGG 0.467234 4_3:+56050700 None:intergenic
GCTTGTGCTCACAATCCTAC+TGG 0.469061 4_3:-56052099 Msa0649410:CDS
AATCCAACCCTTTAGATTCA+GGG 0.470231 4_3:+56052423 None:intergenic
TTTCATTTCCTCTGTTTCCA+TGG 0.471629 4_3:-56054970 Msa0649410:exon
TCTCTCCATTGTTCTTCTGA+AGG 0.474653 4_3:+56052069 None:intergenic
CAGCGGGATGACACCAGAAC+AGG 0.474884 4_3:-56050439 Msa0649410:CDS
GTTCAGGCTTTATCTGGGAC+TGG 0.478849 4_3:-56052724 Msa0649410:CDS
TACTATCACCCTGAATCTAA+AGG 0.480649 4_3:-56052431 Msa0649410:CDS
GGAGGGAGCTGAATAAAAGT+TGG 0.480734 4_3:-56050105 Msa0649410:three_prime_UTR
ACTATCACCCTGAATCTAAA+GGG 0.481415 4_3:-56052430 Msa0649410:CDS
GGTATATAGATTTGGGTGTT+GGG 0.481546 4_3:+56052661 None:intergenic
ACTCCGAGGATTGGATCCTT+AGG 0.493438 4_3:+56054852 None:intergenic
ATGGAATCACATAACCAATC+AGG 0.493504 4_3:-56050714 Msa0649410:intron
TAGCTCCGGTGACGGAGCTC+CGG 0.500615 4_3:+56054913 None:intergenic
GCAAATGAAACAAAGGGAAA+AGG 0.502975 4_3:+56050062 None:intergenic
GCTTCGGTAACTCCGAGGAT+TGG 0.504812 4_3:+56054843 None:intergenic
GAGCAGGGAGTATCTTCCCA+TGG 0.505060 4_3:-56052833 Msa0649410:intron
CTGATCCGCAAGAAAAGCTT+CGG 0.505274 4_3:+56054827 None:intergenic
ATTGAGACTAATGATTAATG+AGG 0.509902 4_3:-56049861 Msa0649410:three_prime_UTR
ACCTAAGGCATCCAACTCTC+TGG 0.511639 4_3:+56051784 None:intergenic
GAACATCGAACCAGCTCCTA+AGG 0.511927 4_3:-56054868 Msa0649410:CDS
CTGCAGTTCAGGCTTTATCT+GGG 0.514039 4_3:-56052729 Msa0649410:CDS
CATGGGTGGAAGCATACATA+TGG 0.514364 4_3:-56052815 Msa0649410:CDS
TGTTATCATGACAGTATGGC+TGG 0.514770 4_3:-56050262 Msa0649410:intron
CTCAACCGGAGCTCCGTCAC+CGG 0.515163 4_3:-56054918 Msa0649410:CDS
CATAACATTTGGAGAGATGC+TGG 0.515488 4_3:-56052476 Msa0649410:CDS
TACGGGCAACGTTGGATATG+TGG 0.515504 4_3:-56050233 Msa0649410:CDS
CATATGTATGCTTCCACCCA+TGG 0.520422 4_3:+56052816 None:intergenic
AGGATTGGATCCTTAGGAGC+TGG 0.523663 4_3:+56054858 None:intergenic
TCATTTCCCTTTGTTTGACA+TGG 0.525399 4_3:-56051928 Msa0649410:CDS
GGTTCAAGAATCACTGAAGC+TGG 0.525800 4_3:-56052794 Msa0649410:CDS
ATAGAGATGTAAAAGCCATC+AGG 0.526430 4_3:-56051875 Msa0649410:CDS
GAGCTAGATTCATGTCTTCG+TGG 0.529355 4_3:-56054896 Msa0649410:CDS
AGTCCAAACAAAGTTAATGT+TGG 0.529361 4_3:-56054804 Msa0649410:CDS
GAGGGAGCTGAATAAAAGTT+GGG 0.530751 4_3:-56050104 Msa0649410:three_prime_UTR
AGCAGGGAGTATCTTCCCAT+GGG 0.532326 4_3:-56052832 Msa0649410:intron
AAGAGGTGGATTGCTGTACA+TGG 0.536615 4_3:+56051412 None:intergenic
AGCAGAAAGAAAGAACCGTC+TGG 0.539208 4_3:+56052126 None:intergenic
TGAGGTATTTGTCGTTCCAA+AGG 0.545379 4_3:+56050142 None:intergenic
ATCCAGACTTGAAGAAGTTG+TGG 0.545968 4_3:-56051355 Msa0649410:CDS
CGAATCGCAAATGAAACAAA+GGG 0.547414 4_3:+56050056 None:intergenic
TCACCCTGAATCTAAAGGGT+TGG 0.547557 4_3:-56052426 Msa0649410:CDS
ATCTGGGGTCTCCATTGCCA+TGG 0.550492 4_3:-56050733 Msa0649410:CDS
GAGAAGATTGCGAATCGCCA+TGG 0.553263 4_3:+56054953 None:intergenic
GGACTGTATGGCCAGAGAGT+TGG 0.555960 4_3:-56051795 Msa0649410:CDS
GGTATGCCATGTCAAACAAA+GGG 0.556105 4_3:+56051922 None:intergenic
AGAGATCTCTTCTCAAATGA+AGG 0.556653 4_3:-56052049 Msa0649410:intron
CTCCAATAATTCTACTTCTG+AGG 0.561476 4_3:+56050124 None:intergenic
TTGGCATGTTCTGCTACAGC+GGG 0.561910 4_3:-56050455 Msa0649410:CDS
GATTTCCACTAGCAAAACCT+TGG 0.563864 4_3:+56051901 None:intergenic
CTAACACATTCAAGAACCAC+AGG 0.564027 4_3:+56054449 None:intergenic
AGTATGGCTGGTCTTAATAC+GGG 0.570434 4_3:-56050250 Msa0649410:CDS
TCGAATCGCAAATGAAACAA+AGG 0.571062 4_3:+56050055 None:intergenic
GCCAGAGAGTTGGATGCCTT+AGG 0.572080 4_3:-56051785 Msa0649410:intron
TCTGAAGGATCTACTCCAGT+AGG 0.572848 4_3:+56052084 None:intergenic
GGTCTTAATACGGGCAACGT+TGG 0.573230 4_3:-56050241 Msa0649410:CDS
CTCAGAAGTAGAATTATTGG+AGG 0.576823 4_3:-56050123 Msa0649410:three_prime_UTR
TGGTATGCCATGTCAAACAA+AGG 0.578691 4_3:+56051921 None:intergenic
GTTATGTGATTCCATGGCAA+TGG 0.584912 4_3:+56050722 None:intergenic
TAAAACAGAATGTGTTCACT+AGG 0.590872 4_3:+56055004 None:intergenic
GCTCCTAAGGATCCAATCCT+CGG 0.593427 4_3:-56054855 Msa0649410:CDS
TAGATTCAGGGTGATAGTAA+CGG 0.595480 4_3:+56052435 None:intergenic
CATGAATCTAGCTCCGGTGA+CGG 0.597404 4_3:+56054905 None:intergenic
TCTATATACCAGTTCCCACC+TGG 0.597915 4_3:-56052648 Msa0649410:CDS
TTGAGACTAATGATTAATGA+GGG 0.598034 4_3:-56049860 Msa0649410:three_prime_UTR
CATCTCTCCAAATGTTATGG+TGG 0.599838 4_3:+56052480 None:intergenic
TGATTGGTTATGTGATTCCA+TGG 0.602248 4_3:+56050716 None:intergenic
CGAAGACATGAATCTAGCTC+CGG 0.602634 4_3:+56054899 None:intergenic
GTTGTGGCTTAAAGAAGTCA+AGG 0.603954 4_3:-56051339 Msa0649410:intron
ATTGGCATGTTCTGCTACAG+CGG 0.606237 4_3:-56050456 Msa0649410:CDS
TAGATCCTTCAGAAGAACAA+TGG 0.608072 4_3:-56052074 Msa0649410:CDS
ATATGTATGCTTCCACCCAT+GGG 0.618917 4_3:+56052817 None:intergenic
GGCGCATATCGGGATGACAA+TGG 0.620903 4_3:-56054476 Msa0649410:CDS
TTGTTTGACATGGCATACCA+AGG 0.620915 4_3:-56051918 Msa0649410:CDS
ACGACAAGTGCTCCATGAAG+AGG 0.624499 4_3:+56051395 None:intergenic
AGATGATTCTGAGTTCATCA+AGG 0.634967 4_3:-56052764 Msa0649410:CDS
ACAAGTGCTCCATGAAGAGG+TGG 0.644744 4_3:+56051398 None:intergenic
GCGAATCGCCATGGAAACAG+AGG 0.646344 4_3:+56054962 None:intergenic
GAATACTGACTTGGACCAGG+TGG 0.647698 4_3:+56052633 None:intergenic
TAGTTCTCATTCCAATGATG+CGG 0.649874 4_3:+56050777 None:intergenic
TCAGAAGTAGAATTATTGGA+GGG 0.651730 4_3:-56050122 Msa0649410:three_prime_UTR
ATTGAATACTGACTTGGACC+AGG 0.652138 4_3:+56052630 None:intergenic
AGGGAGTATCTTCCCATGGG+TGG 0.652799 4_3:-56052829 Msa0649410:CDS
AATACTGACTTGGACCAGGT+GGG 0.664893 4_3:+56052634 None:intergenic
GCGATTCGCAATCTTCTCAA+CGG 0.664921 4_3:-56054948 Msa0649410:CDS
GGATGACAATGGAAAGCCTG+TGG 0.668054 4_3:-56054465 Msa0649410:CDS
CGAAAATGAGAAACAAGCCG+TGG 0.673088 4_3:-56051468 Msa0649410:CDS
GAGAGAATTTGGAAAATCTG+GGG 0.676096 4_3:-56050748 Msa0649410:CDS
AGACTAATGATTAATGAGGG+CGG 0.684129 4_3:-56049857 Msa0649410:three_prime_UTR
CTTACACAGAGTGCTCCAGA+CGG 0.687623 4_3:-56052141 Msa0649410:intron
GAAAAGCTTCGGTAACTCCG+AGG 0.698605 4_3:+56054838 None:intergenic
AATGTGTTAGAGAAGCAGAG+AGG 0.730380 4_3:-56054436 Msa0649410:CDS
AGAGGTGGATTGCTGTACAT+GGG 0.738190 4_3:+56051413 None:intergenic
TCTTCAAGTCTGGATCACCA+AGG 0.760746 4_3:+56051363 None:intergenic
TGTGGCTAACGCTATCAACG+AGG 0.769825 4_3:-56050215 Msa0649410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAGTTTTTTTTTTTTTTTT+TGG - chr4_3:56050528-56050547 Msa0649410:intron 10.0%
!! TTAACAAAAAAAATATTTGA+AGG + chr4_3:56050715-56050734 None:intergenic 10.0%
!!! AAATAAATATTTGTTATTTG+TGG + chr4_3:56050931-56050950 None:intergenic 10.0%
!!! AAATATATAATTTCTACTTT+TGG - chr4_3:56050998-56051017 Msa0649410:intron 10.0%
!!! TTTTTTCAACTTTATTTAAT+GGG - chr4_3:56051071-56051090 Msa0649410:intron 10.0%
!!! AAACTTTGAAATATTTTTTT+GGG + chr4_3:56051477-56051496 None:intergenic 10.0%
!! AAATAAAACTTAATTTCTTA+TGG - chr4_3:56051908-56051927 Msa0649410:CDS 10.0%
!! TATATTAATATAGAATAACA+TGG + chr4_3:56053976-56053995 None:intergenic 10.0%
!! AATAGTTGTTGTAATAATAA+TGG - chr4_3:56050620-56050639 Msa0649410:intron 15.0%
!!! GTTTTTTCAACTTTATTTAA+TGG - chr4_3:56051070-56051089 Msa0649410:intron 15.0%
!! TTTCAAAGATAAATATTTGT+GGG - chr4_3:56051324-56051343 Msa0649410:intron 15.0%
!!! GAAACTTTGAAATATTTTTT+TGG + chr4_3:56051478-56051497 None:intergenic 15.0%
!!! TTAATATCATTTTAAAACAG+TGG + chr4_3:56051871-56051890 None:intergenic 15.0%
!!! TTATACCATAAAGTTTTTTA+GGG + chr4_3:56053680-56053699 None:intergenic 15.0%
!!! TTTATACCATAAAGTTTTTT+AGG + chr4_3:56053681-56053700 None:intergenic 15.0%
!! TGATTTACTAAATTTAAGAA+TGG + chr4_3:56054024-56054043 None:intergenic 15.0%
!!! CCAAATAATAATCATTTTTA+CGG + chr4_3:56054954-56054973 None:intergenic 15.0%
!!! TTTGATTTGCAAATTATAAC+AGG - chr4_3:56050414-56050433 Msa0649410:CDS 20.0%
!!! TTGATTTGCAAATTATAACA+GGG - chr4_3:56050415-56050434 Msa0649410:CDS 20.0%
!!! TTAATGCTAACATTGATTTT+AGG - chr4_3:56050551-56050570 Msa0649410:intron 20.0%
!!! TGTAATTTGTTTCTTTCTTT+AGG - chr4_3:56051250-56051269 Msa0649410:intron 20.0%
!! GTTTCAAAGATAAATATTTG+TGG - chr4_3:56051323-56051342 Msa0649410:intron 20.0%
!! TTCAAAGATAAATATTTGTG+GGG - chr4_3:56051325-56051344 Msa0649410:intron 20.0%
!! CTAACCTACTAAAAATTTAA+GGG + chr4_3:56051383-56051402 None:intergenic 20.0%
!!! TCTCACTTTTAGAAATATTT+TGG + chr4_3:56051568-56051587 None:intergenic 20.0%
!! CTTTAATTAATCTACAAGAA+TGG - chr4_3:56051779-56051798 Msa0649410:intron 20.0%
!! ATTACAAGATCAATAATTCT+AGG + chr4_3:56052398-56052417 None:intergenic 20.0%
!! AATAATTAAAGTGAGACTAA+TGG + chr4_3:56052707-56052726 None:intergenic 20.0%
!! TAAGAAATAACCAATTTAAG+AGG + chr4_3:56052755-56052774 None:intergenic 20.0%
!! TCAATCATATGCAAAAAATA+TGG - chr4_3:56053095-56053114 Msa0649410:intron 20.0%
!! CAATCATATGCAAAAAATAT+GGG - chr4_3:56053096-56053115 Msa0649410:intron 20.0%
!! CTAATACTAATCAATAAGAA+TGG + chr4_3:56053161-56053180 None:intergenic 20.0%
!!! CATTCTTATTGATTAGTATT+AGG - chr4_3:56053159-56053178 Msa0649410:intron 20.0%
!! AATGATATGTATGTAAACAT+TGG - chr4_3:56053309-56053328 Msa0649410:intron 20.0%
!!! TTTTTCCCTAAAAAACTTTA+TGG - chr4_3:56053672-56053691 Msa0649410:intron 20.0%
!! ATATATAAGAAAAAAGTCTG+AGG + chr4_3:56053880-56053899 None:intergenic 20.0%
!! TGTCTTCTTAAATTATCATT+TGG + chr4_3:56054001-56054020 None:intergenic 20.0%
!! GTTGCATAATTGAATAATTT+AGG + chr4_3:56054735-56054754 None:intergenic 20.0%
!! CCGTAAAAATGATTATTATT+TGG - chr4_3:56054951-56054970 Msa0649410:CDS 20.0%
! TACAGTTACAAAGTTAGATT+TGG - chr4_3:56049883-56049902 Msa0649410:three_prime_UTR 25.0%
! AGCATCTAACTTTAGTTAAA+AGG - chr4_3:56050841-56050860 Msa0649410:intron 25.0%
! ATTTGTGGAATTCTTAACAT+TGG + chr4_3:56050916-56050935 None:intergenic 25.0%
!! TTTCTTTCTTTAGGTGTTTT+GGG - chr4_3:56051259-56051278 Msa0649410:intron 25.0%
! CAATAAAAATTTAAGGGATG+CGG + chr4_3:56051352-56051371 None:intergenic 25.0%
! TACTAAAAATTTAAGGGATG+CGG + chr4_3:56051377-56051396 None:intergenic 25.0%
! CCTAACCTACTAAAAATTTA+AGG + chr4_3:56051384-56051403 None:intergenic 25.0%
!!! CCTTAAATTTTTAGTAGGTT+AGG - chr4_3:56051381-56051400 Msa0649410:CDS 25.0%
!!! ATTTTTAGTAGGTTAGGTAT+TGG - chr4_3:56051387-56051406 Msa0649410:CDS 25.0%
!!! TAATTGGTTTTGTAGAATGT+GGG - chr4_3:56051435-56051454 Msa0649410:CDS 25.0%
! CTTTCTGTTAGAAAAAAGTA+CGG - chr4_3:56051526-56051545 Msa0649410:intron 25.0%
!! AAAAGTACGGATAATTAATC+AGG - chr4_3:56051539-56051558 Msa0649410:intron 25.0%
! AAATCAATGGCAGTATTTAA+AGG + chr4_3:56052317-56052336 None:intergenic 25.0%
! TTTGATATTTCGTAGATATC+TGG - chr4_3:56052372-56052391 Msa0649410:intron 25.0%
! CATGTTAAAAGATAGAGTTA+TGG + chr4_3:56053256-56053275 None:intergenic 25.0%
!!! TTTTTTAGGGAAAAAAGCAA+AGG + chr4_3:56053667-56053686 None:intergenic 25.0%
! CAATGCTCAATTAACATAAT+TGG - chr4_3:56053916-56053935 Msa0649410:intron 25.0%
! AGAAAATGAACTTACATAGA+TGG - chr4_3:56054090-56054109 Msa0649410:intron 25.0%
! ACCATAAAAATAAGAGAGAA+GGG + chr4_3:56054301-56054320 None:intergenic 25.0%
! AACCATAAAAATAAGAGAGA+AGG + chr4_3:56054302-56054321 None:intergenic 25.0%
!!! CTCTTATTTTTATGGTTACT+TGG - chr4_3:56054305-56054324 Msa0649410:intron 25.0%
!! CAAAGTGTTAAAAACTTAGT+TGG - chr4_3:56054395-56054414 Msa0649410:intron 25.0%
! AACTCATAGTATAAGAGAAA+TGG + chr4_3:56054590-56054609 None:intergenic 25.0%
! TATATGTTATCATGACAGTA+TGG - chr4_3:56054646-56054665 Msa0649410:intron 25.0%
! TTAGTCTCAATCAACTTATA+AGG + chr4_3:56055042-56055061 None:intergenic 25.0%
! ATTGAGACTAATGATTAATG+AGG - chr4_3:56055051-56055070 Msa0649410:five_prime_UTR 25.0%
! TTGAGACTAATGATTAATGA+GGG - chr4_3:56055052-56055071 Msa0649410:five_prime_UTR 25.0%
TAAAACAGAATGTGTTCACT+AGG + chr4_3:56049911-56049930 None:intergenic 30.0%
AGTCCAAACAAAGTTAATGT+TGG - chr4_3:56050108-56050127 Msa0649410:three_prime_UTR 30.0%
ACTCCAACATTAACTTTGTT+TGG + chr4_3:56050114-56050133 None:intergenic 30.0%
AAAACTTGACTCACATGAAT+TGG + chr4_3:56050516-56050535 None:intergenic 30.0%
CGTACATAGAAACTTTAGTT+GGG - chr4_3:56050818-56050837 Msa0649410:intron 30.0%
ACATTGGACAAATGTTAACA+TGG + chr4_3:56050900-56050919 None:intergenic 30.0%
!!! TTTCATGTGCCATTTTTTTG+TGG - chr4_3:56051105-56051124 Msa0649410:intron 30.0%
! GTTTCTTTCTTTAGGTGTTT+TGG - chr4_3:56051258-56051277 Msa0649410:intron 30.0%
AAAAGCAGCATCAATAAAAC+AGG + chr4_3:56051299-56051318 None:intergenic 30.0%
! CGCATCCCTTAAATTTTTAT+TGG - chr4_3:56051350-56051369 Msa0649410:CDS 30.0%
GCGGACCAATAAAAATTTAA+GGG + chr4_3:56051358-56051377 None:intergenic 30.0%
TGCGGACCAATAAAAATTTA+AGG + chr4_3:56051359-56051378 None:intergenic 30.0%
!!! GCATCCCTTAAATTTTTAGT+AGG - chr4_3:56051376-56051395 Msa0649410:CDS 30.0%
ATGACCGAAATTCATAGTAA+CGG - chr4_3:56051410-56051429 Msa0649410:CDS 30.0%
TACTCCGTTACTATGAATTT+CGG + chr4_3:56051417-56051436 None:intergenic 30.0%
! ATTCATAGTAACGGAGTAAT+TGG - chr4_3:56051419-56051438 Msa0649410:CDS 30.0%
!!! GTAATTGGTTTTGTAGAATG+TGG - chr4_3:56051434-56051453 Msa0649410:CDS 30.0%
!!! CGTACTTTTTTCTAACAGAA+AGG + chr4_3:56051528-56051547 None:intergenic 30.0%
TCTAAAAGTGAGAAGAAAAC+TGG - chr4_3:56051575-56051594 Msa0649410:intron 30.0%
TTACAGCTTATAGCACAAAT+AGG - chr4_3:56051620-56051639 Msa0649410:intron 30.0%
! TTTAAAACAGTGGCGATAAA+AGG + chr4_3:56051861-56051880 None:intergenic 30.0%
TTTCAGGAGAATGTTACTAA+GGG + chr4_3:56051997-56052016 None:intergenic 30.0%
GTAGTGTAAAAAACTGTTTC+AGG + chr4_3:56052013-56052032 None:intergenic 30.0%
! ATTTGGATTGAATACTGACT+TGG + chr4_3:56052291-56052310 None:intergenic 30.0%
GCAGTATTTAAAGGAAGATT+TGG + chr4_3:56052308-56052327 None:intergenic 30.0%
TTCTGTAGACTCAAAATCAA+TGG + chr4_3:56052330-56052349 None:intergenic 30.0%
TAGTAACGGTATGTCTTTAT+TGG + chr4_3:56052466-56052485 None:intergenic 30.0%
ACTCTTCTTACCTCTTAAAT+TGG - chr4_3:56052742-56052761 Msa0649410:CDS 30.0%
TCTTCTCAAATGAAGGTTAA+AGG - chr4_3:56052870-56052889 Msa0649410:intron 30.0%
ATCATCAACAAAAATCCTGA+TGG + chr4_3:56053055-56053074 None:intergenic 30.0%
!! ATCAGGATTTTTGTTGATGA+TGG - chr4_3:56053054-56053073 Msa0649410:intron 30.0%
!! GTTGATGATGGTCATTTATT+AGG - chr4_3:56053066-56053085 Msa0649410:intron 30.0%
AGTCATAAGTGTTATCTTTG+CGG + chr4_3:56053400-56053419 None:intergenic 30.0%
GCATACTGCAGAATTATATA+TGG + chr4_3:56053706-56053725 None:intergenic 30.0%
!!! TGCAGTATGCTATTTTTCTA+AGG - chr4_3:56053716-56053735 Msa0649410:intron 30.0%
!!! AGTATGCTATTTTTCTAAGG+TGG - chr4_3:56053719-56053738 Msa0649410:intron 30.0%
AATGAAATTCATCCAATCCT+AGG - chr4_3:56053842-56053861 Msa0649410:intron 30.0%
GCACAGAAAATAAGAAAAAG+TGG + chr4_3:56054249-56054268 None:intergenic 30.0%
CCATAAAAATAAGAGAGAAG+GGG + chr4_3:56054300-56054319 None:intergenic 30.0%
CATATTTACATGACTCGTAA+TGG - chr4_3:56054519-56054538 Msa0649410:intron 30.0%
TCTCTTATACTATGAGTTCT+TGG - chr4_3:56054592-56054611 Msa0649410:intron 30.0%
! CATACCAAATTTTTGTCCTT+TGG - chr4_3:56054754-56054773 Msa0649410:intron 30.0%
TACCTCAGAAGTAGAATTAT+TGG - chr4_3:56054786-56054805 Msa0649410:intron 30.0%
TCAGAAGTAGAATTATTGGA+GGG - chr4_3:56054790-56054809 Msa0649410:intron 30.0%
TGAGAAGTAGATTGAATAAG+AGG - chr4_3:56054894-56054913 Msa0649410:CDS 30.0%
! TGATTTTGTTGATGCTAGAA+CGG - chr4_3:56054987-56055006 Msa0649410:five_prime_UTR 30.0%
TTTCATTTCCTCTGTTTCCA+TGG - chr4_3:56049942-56049961 Msa0649410:three_prime_UTR 35.0%
AATTATAACAGGGCGCATAT+CGG - chr4_3:56050425-56050444 Msa0649410:CDS 35.0%
GCGTACATAGAAACTTTAGT+TGG - chr4_3:56050817-56050836 Msa0649410:intron 35.0%
! ACTTTTGGTATACCAACATG+TGG - chr4_3:56051013-56051032 Msa0649410:intron 35.0%
ACGTGATCACCACAAAAAAA+TGG + chr4_3:56051117-56051136 None:intergenic 35.0%
!!! AGTTTGCTTTTTTGGTACGT+TGG - chr4_3:56051150-56051169 Msa0649410:intron 35.0%
CTACAAGAATGGTATGAGAT+TGG - chr4_3:56051790-56051809 Msa0649410:CDS 35.0%
AAGAATGGTATGAGATTGGA+CGG - chr4_3:56051794-56051813 Msa0649410:CDS 35.0%
ACGGTTAAGATCAATTACTG+CGG - chr4_3:56051813-56051832 Msa0649410:CDS 35.0%
!! TATTAGAAGCTTGTTGACCA+AGG + chr4_3:56051970-56051989 None:intergenic 35.0%
GTTTCAGGAGAATGTTACTA+AGG + chr4_3:56051998-56052017 None:intergenic 35.0%
AGATGATTCTGAGTTCATCA+AGG - chr4_3:56052148-56052167 Msa0649410:intron 35.0%
GGTATATAGATTTGGGTGTT+GGG + chr4_3:56052254-56052273 None:intergenic 35.0%
TGGTATATAGATTTGGGTGT+TGG + chr4_3:56052255-56052274 None:intergenic 35.0%
GGGAACTGGTATATAGATTT+GGG + chr4_3:56052261-56052280 None:intergenic 35.0%
TGGGAACTGGTATATAGATT+TGG + chr4_3:56052262-56052281 None:intergenic 35.0%
ATTACAGCCACCATAACATT+TGG - chr4_3:56052425-56052444 Msa0649410:CDS 35.0%
TAGATTCAGGGTGATAGTAA+CGG + chr4_3:56052480-56052499 None:intergenic 35.0%
TACTATCACCCTGAATCTAA+AGG - chr4_3:56052481-56052500 Msa0649410:CDS 35.0%
ACTATCACCCTGAATCTAAA+GGG - chr4_3:56052482-56052501 Msa0649410:CDS 35.0%
AATCCAACCCTTTAGATTCA+GGG + chr4_3:56052492-56052511 None:intergenic 35.0%
AAATCCAACCCTTTAGATTC+AGG + chr4_3:56052493-56052512 None:intergenic 35.0%
! TCTAAAGGGTTGGATTTTTC+TGG - chr4_3:56052496-56052515 Msa0649410:intron 35.0%
GAGTCATGTATAAAGTGTGT+CGG + chr4_3:56052569-56052588 None:intergenic 35.0%
!! GCTGTGTTACTATCTACTTT+TGG - chr4_3:56052592-56052611 Msa0649410:intron 35.0%
!! CTATCTACTTTTGGTCTATG+AGG - chr4_3:56052601-56052620 Msa0649410:intron 35.0%
AGTTTGACATTGTAACCTCT+AGG - chr4_3:56052642-56052661 Msa0649410:intron 35.0%
GTTTGACATTGTAACCTCTA+GGG - chr4_3:56052643-56052662 Msa0649410:CDS 35.0%
! ATTTTACAACCGTCTTTGAC+GGG + chr4_3:56052682-56052701 None:intergenic 35.0%
! CATTTTACAACCGTCTTTGA+CGG + chr4_3:56052683-56052702 None:intergenic 35.0%
TAGATCCTTCAGAAGAACAA+TGG - chr4_3:56052838-56052857 Msa0649410:intron 35.0%
AGAGATCTCTTCTCAAATGA+AGG - chr4_3:56052863-56052882 Msa0649410:intron 35.0%
TCATTGCTATGATTGTTTGC+AGG - chr4_3:56052954-56052973 Msa0649410:intron 35.0%
TATGATTGTTTGCAGGCTAA+AGG - chr4_3:56052961-56052980 Msa0649410:intron 35.0%
! TCATTTCCCTTTGTTTGACA+TGG - chr4_3:56052984-56053003 Msa0649410:intron 35.0%
! ATGGCTTTTACATCTCTATC+TGG + chr4_3:56053036-56053055 None:intergenic 35.0%
ATAGAGATGTAAAAGCCATC+AGG - chr4_3:56053037-56053056 Msa0649410:intron 35.0%
GCAAAAAATATGGGACTGTA+TGG - chr4_3:56053105-56053124 Msa0649410:intron 35.0%
AAGAATGGTCTACTTACCTA+AGG + chr4_3:56053146-56053165 None:intergenic 35.0%
TTAGTATTAGGCCAAAGAGT+TGG - chr4_3:56053171-56053190 Msa0649410:intron 35.0%
!! CAATTGACTTTTTACAGCCA+CGG + chr4_3:56053464-56053483 None:intergenic 35.0%
! GGGGAGTAAAACTTTTATAG+AGG + chr4_3:56053633-56053652 None:intergenic 35.0%
!!! GCTATTTTTCTAAGGTGGAA+TGG - chr4_3:56053724-56053743 Msa0649410:intron 35.0%
CTGTTAATCATTAGTGACTG+AGG - chr4_3:56053770-56053789 Msa0649410:intron 35.0%
TCAAAAAGTAAGCCTAGGAT+TGG + chr4_3:56053857-56053876 None:intergenic 35.0%
GCATGAATAAGTTGTAGCAA+CGG - chr4_3:56054065-56054084 Msa0649410:intron 35.0%
TACATAGATGGCTTCTTTAC+AGG - chr4_3:56054102-56054121 Msa0649410:intron 35.0%
TAGTTCTCATTCCAATGATG+CGG + chr4_3:56054138-56054157 None:intergenic 35.0%
AACTACACTACGAGAGAATT+TGG - chr4_3:56054153-56054172 Msa0649410:intron 35.0%
ACGAGAGAATTTGGAAAATC+TGG - chr4_3:56054162-56054181 Msa0649410:intron 35.0%
CGAGAGAATTTGGAAAATCT+GGG - chr4_3:56054163-56054182 Msa0649410:intron 35.0%
GAGAGAATTTGGAAAATCTG+GGG - chr4_3:56054164-56054183 Msa0649410:intron 35.0%
! TGATTGGTTATGTGATTCCA+TGG + chr4_3:56054199-56054218 None:intergenic 35.0%
ATGGAATCACATAACCAATC+AGG - chr4_3:56054198-56054217 Msa0649410:intron 35.0%
!!! CCCCTTCTCTCTTATTTTTA+TGG - chr4_3:56054297-56054316 Msa0649410:intron 35.0%
CTGTTACTATTTGTGCAGAT+TGG - chr4_3:56054438-56054457 Msa0649410:CDS 35.0%
ATACTATGAGTTCTTGGAGA+TGG - chr4_3:56054598-56054617 Msa0649410:intron 35.0%
TACTATGAGTTCTTGGAGAT+GGG - chr4_3:56054599-56054618 Msa0649410:intron 35.0%
CGTTCCAAAGGACAAAAATT+TGG + chr4_3:56054761-56054780 None:intergenic 35.0%
CTCCAATAATTCTACTTCTG+AGG + chr4_3:56054791-56054810 None:intergenic 35.0%
CTCAGAAGTAGAATTATTGG+AGG - chr4_3:56054789-56054808 Msa0649410:intron 35.0%
GCAAATGAAACAAAGGGAAA+AGG + chr4_3:56054853-56054872 None:intergenic 35.0%
CGAATCGCAAATGAAACAAA+GGG + chr4_3:56054859-56054878 None:intergenic 35.0%
TCGAATCGCAAATGAAACAA+AGG + chr4_3:56054860-56054879 None:intergenic 35.0%
AGACTAATGATTAATGAGGG+CGG - chr4_3:56055055-56055074 Msa0649410:five_prime_UTR 35.0%
TCAACGGACAATTTCTCAAC+CGG - chr4_3:56049980-56049999 Msa0649410:three_prime_UTR 40.0%
! AGTTACCGAAGCTTTTCTTG+CGG - chr4_3:56050080-56050099 Msa0649410:three_prime_UTR 40.0%
! AGAACAGTGTTGCTCTGTTA+TGG + chr4_3:56050253-56050272 None:intergenic 40.0%
ATTATAACAGGGCGCATATC+GGG - chr4_3:56050426-56050445 Msa0649410:CDS 40.0%
CTAACACATTCAAGAACCAC+AGG + chr4_3:56050466-56050485 None:intergenic 40.0%
AATGTGTTAGAGAAGCAGAG+AGG - chr4_3:56050476-56050495 Msa0649410:intron 40.0%
GTTAACTTAACGCCACATGT+TGG + chr4_3:56051028-56051047 None:intergenic 40.0%
AAAAAAGCAAACTCAGCTGG+TGG + chr4_3:56051143-56051162 None:intergenic 40.0%
!!! ACCAGCTGAGTTTGCTTTTT+TGG - chr4_3:56051142-56051161 Msa0649410:intron 40.0%
ACCAAAAAAGCAAACTCAGC+TGG + chr4_3:56051146-56051165 None:intergenic 40.0%
AGAACACTGCAACAACAAGT+AGG + chr4_3:56051189-56051208 None:intergenic 40.0%
AAATTACACCACACAGAGCA+AGG + chr4_3:56051238-56051257 None:intergenic 40.0%
!!! TAGGTGTTTTGGGATGATGT+AGG - chr4_3:56051269-56051288 Msa0649410:intron 40.0%
!!! AGGTGTTTTGGGATGATGTA+GGG - chr4_3:56051270-56051289 Msa0649410:intron 40.0%
TTGTAGAATGTGGGACTTGT+TGG - chr4_3:56051444-56051463 Msa0649410:CDS 40.0%
! GAGAAGAAAACTGGTCTGTT+TGG - chr4_3:56051584-56051603 Msa0649410:intron 40.0%
TGCGGCACATATTTAATGCT+CGG - chr4_3:56051831-56051850 Msa0649410:CDS 40.0%
ACCGTTTCAAATGTTTGAGC+AGG - chr4_3:56052063-56052082 Msa0649410:CDS 40.0%
CCCTGCTCAAACATTTGAAA+CGG + chr4_3:56052067-56052086 None:intergenic 40.0%
CCGTTTCAAATGTTTGAGCA+GGG - chr4_3:56052064-56052083 Msa0649410:CDS 40.0%
ATATGTATGCTTCCACCCAT+GGG + chr4_3:56052098-56052117 None:intergenic 40.0%
TAAACGAATAGCTGCAGTTC+AGG - chr4_3:56052172-56052191 Msa0649410:intron 40.0%
!! ATTGAATACTGACTTGGACC+AGG + chr4_3:56052285-56052304 None:intergenic 40.0%
CATCTCTCCAAATGTTATGG+TGG + chr4_3:56052435-56052454 None:intergenic 40.0%
CAGCATCTCTCCAAATGTTA+TGG + chr4_3:56052438-56052457 None:intergenic 40.0%
CATAACATTTGGAGAGATGC+TGG - chr4_3:56052436-56052455 Msa0649410:CDS 40.0%
! GTTGGATTTTTCTGGACTGA+TGG - chr4_3:56052504-56052523 Msa0649410:intron 40.0%
! TGGACTGATGGATGACATTA+AGG - chr4_3:56052516-56052535 Msa0649410:intron 40.0%
TCTCTCCATTGTTCTTCTGA+AGG + chr4_3:56052846-56052865 None:intergenic 40.0%
GGTATGCCATGTCAAACAAA+GGG + chr4_3:56052993-56053012 None:intergenic 40.0%
TGGTATGCCATGTCAAACAA+AGG + chr4_3:56052994-56053013 None:intergenic 40.0%
TTGTTTGACATGGCATACCA+AGG - chr4_3:56052994-56053013 Msa0649410:intron 40.0%
GATTTCCACTAGCAAAACCT+TGG + chr4_3:56053014-56053033 None:intergenic 40.0%
! TATTAGGCCAAAGAGTTGGT+TGG - chr4_3:56053175-56053194 Msa0649410:intron 40.0%
AGTAGTTCCAACCAACTCTT+TGG + chr4_3:56053185-56053204 None:intergenic 40.0%
!! TTTAGTTTGAAGCCTTGAGC+TGG - chr4_3:56053338-56053357 Msa0649410:intron 40.0%
AAGTTCTGTAAACCAGCTCA+AGG + chr4_3:56053353-56053372 None:intergenic 40.0%
! TGAGCTGGTTTACAGAACTT+TGG - chr4_3:56053353-56053372 Msa0649410:intron 40.0%
! TTTTCGCAAAGTAAGCTGCA+AGG + chr4_3:56053430-56053449 None:intergenic 40.0%
ATCCAGACTTGAAGAAGTTG+TGG - chr4_3:56053557-56053576 Msa0649410:intron 40.0%
GTTGTGGCTTAAAGAAGTCA+AGG - chr4_3:56053573-56053592 Msa0649410:intron 40.0%
AAAAAAGCAAAGGCTGTGAG+AGG + chr4_3:56053657-56053676 None:intergenic 40.0%
ATCATTAGTGACTGAGGCTA+TGG - chr4_3:56053776-56053795 Msa0649410:intron 40.0%
TGAGGTCAAAAAGTAAGCCT+AGG + chr4_3:56053862-56053881 None:intergenic 40.0%
GATGGCTTCTTTACAGGTTA+TGG - chr4_3:56054108-56054127 Msa0649410:intron 40.0%
GTTATGTGATTCCATGGCAA+TGG + chr4_3:56054193-56054212 None:intergenic 40.0%
TGCATTCAACTGAACCTGAT+TGG + chr4_3:56054215-56054234 None:intergenic 40.0%
GTGCTTATTGTAGTTGCTTG+AGG - chr4_3:56054265-56054284 Msa0649410:intron 40.0%
TACTTGGAGACCAAGTATCT+TGG - chr4_3:56054321-56054340 Msa0649410:intron 40.0%
TGACTCGTAATGGTCGTATA+AGG - chr4_3:56054529-56054548 Msa0649410:intron 40.0%
TGTTATCATGACAGTATGGC+TGG - chr4_3:56054650-56054669 Msa0649410:intron 40.0%
!! CAGTATGGCTGGTCTTAATA+CGG - chr4_3:56054661-56054680 Msa0649410:intron 40.0%
!! AGTATGGCTGGTCTTAATAC+GGG - chr4_3:56054662-56054681 Msa0649410:intron 40.0%
! TGAGGTATTTGTCGTTCCAA+AGG + chr4_3:56054773-56054792 None:intergenic 40.0%
GAGGGAGCTGAATAAAAGTT+GGG - chr4_3:56054808-56054827 Msa0649410:CDS 40.0%
GCGATTCGCAATCTTCTCAA+CGG - chr4_3:56049964-56049983 Msa0649410:three_prime_UTR 45.0%
! CGAAGACATGAATCTAGCTC+CGG + chr4_3:56050016-56050035 None:intergenic 45.0%
GAGCTAGATTCATGTCTTCG+TGG - chr4_3:56050016-56050035 Msa0649410:three_prime_UTR 45.0%
GATTCATGTCTTCGTGGTTC+AGG - chr4_3:56050022-56050041 Msa0649410:three_prime_UTR 45.0%
CTGATCCGCAAGAAAAGCTT+CGG + chr4_3:56050088-56050107 None:intergenic 45.0%
TCATGATTCCTTGCTCTGTG+TGG - chr4_3:56051227-56051246 Msa0649410:intron 45.0%
CAAGGTAGGTCTGAATCTGA+TGG + chr4_3:56051952-56051971 None:intergenic 45.0%
CATCAGATTCAGACCTACCT+TGG - chr4_3:56051950-56051969 Msa0649410:intron 45.0%
!! AGAAGCTTGTTGACCAAGGT+AGG + chr4_3:56051966-56051985 None:intergenic 45.0%
CATATGTATGCTTCCACCCA+TGG + chr4_3:56052099-56052118 None:intergenic 45.0%
! CATGGGTGGAAGCATACATA+TGG - chr4_3:56052097-56052116 Msa0649410:CDS 45.0%
GGTTCAAGAATCACTGAAGC+TGG - chr4_3:56052118-56052137 Msa0649410:CDS 45.0%
GAATCACTGAAGCTGGCATA+TGG - chr4_3:56052125-56052144 Msa0649410:CDS 45.0%
! CTGCAGTTCAGGCTTTATCT+GGG - chr4_3:56052183-56052202 Msa0649410:intron 45.0%
TCTATATACCAGTTCCCACC+TGG - chr4_3:56052264-56052283 Msa0649410:intron 45.0%
!! AATACTGACTTGGACCAGGT+GGG + chr4_3:56052281-56052300 None:intergenic 45.0%
TCACCCTGAATCTAAAGGGT+TGG - chr4_3:56052486-56052505 Msa0649410:intron 45.0%
! ATTGTAACCTCTAGGGACGA+AGG - chr4_3:56052650-56052669 Msa0649410:CDS 45.0%
AGGTCAAATCCCGTCAAAGA+CGG - chr4_3:56052670-56052689 Msa0649410:CDS 45.0%
AGCAGAAAGAAAGAACCGTC+TGG + chr4_3:56052789-56052808 None:intergenic 45.0%
TCTGAAGGATCTACTCCAGT+AGG + chr4_3:56052831-56052850 None:intergenic 45.0%
! GCATACCAAGGTTTTGCTAG+TGG - chr4_3:56053006-56053025 Msa0649410:intron 45.0%
CGAAAATGAGAAACAAGCCG+TGG - chr4_3:56053444-56053463 Msa0649410:intron 45.0%
!! AGAGGTGGATTGCTGTACAT+GGG + chr4_3:56053502-56053521 None:intergenic 45.0%
!! AAGAGGTGGATTGCTGTACA+TGG + chr4_3:56053503-56053522 None:intergenic 45.0%
TACAGCAATCCACCTCTTCA+TGG - chr4_3:56053505-56053524 Msa0649410:intron 45.0%
! CTTGTCGTTTCAACTGTCCT+TGG - chr4_3:56053532-56053551 Msa0649410:intron 45.0%
TCTTCAAGTCTGGATCACCA+AGG + chr4_3:56053552-56053571 None:intergenic 45.0%
AGCCACAACTTCTTCAAGTC+TGG + chr4_3:56053562-56053581 None:intergenic 45.0%
TGGAGACCAAGTATCTTGGT+AGG - chr4_3:56054325-56054344 Msa0649410:intron 45.0%
GGAGACCAAGTATCTTGGTA+GGG - chr4_3:56054326-56054345 Msa0649410:intron 45.0%
GAGACCAAGTATCTTGGTAG+GGG - chr4_3:56054327-56054346 Msa0649410:intron 45.0%
AAGTATCTTGGTAGGGGAGA+GGG - chr4_3:56054333-56054352 Msa0649410:intron 45.0%
ATTGGCATGTTCTGCTACAG+CGG - chr4_3:56054456-56054475 Msa0649410:CDS 45.0%
GTCAAACGATCAACCTGTTC+TGG + chr4_3:56054489-56054508 None:intergenic 45.0%
GGAGGGAGCTGAATAAAAGT+TGG - chr4_3:56054807-56054826 Msa0649410:CDS 45.0%
GAGAAGATTGCGAATCGCCA+TGG + chr4_3:56049962-56049981 None:intergenic 50.0%
! CATGAATCTAGCTCCGGTGA+CGG + chr4_3:56050010-56050029 None:intergenic 50.0%
GAACATCGAACCAGCTCCTA+AGG - chr4_3:56050044-56050063 Msa0649410:three_prime_UTR 50.0%
AGGATTGGATCCTTAGGAGC+TGG + chr4_3:56050057-56050076 None:intergenic 50.0%
GCTCCTAAGGATCCAATCCT+CGG - chr4_3:56050057-56050076 Msa0649410:three_prime_UTR 50.0%
ACTCCGAGGATTGGATCCTT+AGG + chr4_3:56050063-56050082 None:intergenic 50.0%
GAAAAGCTTCGGTAACTCCG+AGG + chr4_3:56050077-56050096 None:intergenic 50.0%
GGATGACAATGGAAAGCCTG+TGG - chr4_3:56050447-56050466 Msa0649410:CDS 50.0%
GAAGCAGAGAGGAGAATTGC+AGG - chr4_3:56050487-56050506 Msa0649410:intron 50.0%
!! AGCAGGGAGTATCTTCCCAT+GGG - chr4_3:56052080-56052099 Msa0649410:CDS 50.0%
! GCTGCAGTTCAGGCTTTATC+TGG - chr4_3:56052182-56052201 Msa0649410:intron 50.0%
! GTTCAGGCTTTATCTGGGAC+TGG - chr4_3:56052188-56052207 Msa0649410:intron 50.0%
!! GAATACTGACTTGGACCAGG+TGG + chr4_3:56052282-56052301 None:intergenic 50.0%
GATTTGACCTTCGTCCCTAG+AGG + chr4_3:56052660-56052679 None:intergenic 50.0%
! CTTACACAGAGTGCTCCAGA+CGG - chr4_3:56052771-56052790 Msa0649410:CDS 50.0%
GCTTGTGCTCACAATCCTAC+TGG - chr4_3:56052813-56052832 Msa0649410:CDS 50.0%
! ACCTAAGGCATCCAACTCTC+TGG + chr4_3:56053131-56053150 None:intergenic 50.0%
TGGATTGCTGTACATGGGTC+TGG + chr4_3:56053497-56053516 None:intergenic 50.0%
ACAAGTGCTCCATGAAGAGG+TGG + chr4_3:56053517-56053536 None:intergenic 50.0%
ACGACAAGTGCTCCATGAAG+AGG + chr4_3:56053520-56053539 None:intergenic 50.0%
AAGCAAAGGCTGTGAGAGGT+GGG + chr4_3:56053653-56053672 None:intergenic 50.0%
AAAGCAAAGGCTGTGAGAGG+TGG + chr4_3:56053654-56053673 None:intergenic 50.0%
GTTATGGCAGACCGCATCAT+TGG - chr4_3:56054124-56054143 Msa0649410:intron 50.0%
CTCTCCCCTACCAAGATACT+TGG + chr4_3:56054334-56054353 None:intergenic 50.0%
CAAGTATCTTGGTAGGGGAG+AGG - chr4_3:56054332-56054351 Msa0649410:intron 50.0%
TTGGCATGTTCTGCTACAGC+GGG - chr4_3:56054457-56054476 Msa0649410:CDS 50.0%
GGTCTTAATACGGGCAACGT+TGG - chr4_3:56054671-56054690 Msa0649410:intron 50.0%
TACGGGCAACGTTGGATATG+TGG - chr4_3:56054679-56054698 Msa0649410:intron 50.0%
TGTGGCTAACGCTATCAACG+AGG - chr4_3:56054697-56054716 Msa0649410:intron 50.0%
GCGAATCGCCATGGAAACAG+AGG + chr4_3:56049953-56049972 None:intergenic 55.0%
GCTTCGGTAACTCCGAGGAT+TGG + chr4_3:56050072-56050091 None:intergenic 55.0%
GGCGCATATCGGGATGACAA+TGG - chr4_3:56050436-56050455 Msa0649410:CDS 55.0%
!! GAGCAGGGAGTATCTTCCCA+TGG - chr4_3:56052079-56052098 Msa0649410:CDS 55.0%
!! AGGGAGTATCTTCCCATGGG+TGG - chr4_3:56052083-56052102 Msa0649410:CDS 55.0%
GGACTGTATGGCCAGAGAGT+TGG - chr4_3:56053117-56053136 Msa0649410:intron 55.0%
GCCAGAGAGTTGGATGCCTT+AGG - chr4_3:56053127-56053146 Msa0649410:intron 55.0%
AGCAAAGGCTGTGAGAGGTG+GGG + chr4_3:56053652-56053671 None:intergenic 55.0%
! ATCTGGGGTCTCCATTGCCA+TGG - chr4_3:56054179-56054198 Msa0649410:intron 55.0%
GACTTGGACCAGGTGGGAAC+TGG + chr4_3:56052275-56052294 None:intergenic 60.0%
CAGCGGGATGACACCAGAAC+AGG - chr4_3:56054473-56054492 Msa0649410:CDS 60.0%
CTCAACCGGAGCTCCGTCAC+CGG - chr4_3:56049994-56050013 Msa0649410:three_prime_UTR 65.0%
!! TAGCTCCGGTGACGGAGCTC+CGG + chr4_3:56050002-56050021 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 56049835 56055099 56049835 ID=Msa0649410;Name=Msa0649410
chr4_3 mRNA 56049835 56055099 56049835 ID=Msa0649410-mRNA-1;Parent=Msa0649410;Name=Msa0649410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=126|1|1|1|1|1|10|363|424
chr4_3 exon 56049835 56050270 56049835 ID=Msa0649410-mRNA-1:exon:14508;Parent=Msa0649410-mRNA-1
chr4_3 exon 56050384 56050478 56050384 ID=Msa0649410-mRNA-1:exon:14507;Parent=Msa0649410-mRNA-1
chr4_3 exon 56050715 56050810 56050715 ID=Msa0649410-mRNA-1:exon:14506;Parent=Msa0649410-mRNA-1
chr4_3 exon 56051340 56051499 56051340 ID=Msa0649410-mRNA-1:exon:14505;Parent=Msa0649410-mRNA-1
chr4_3 exon 56051786 56051958 56051786 ID=Msa0649410-mRNA-1:exon:14504;Parent=Msa0649410-mRNA-1
chr4_3 exon 56052050 56052154 56052050 ID=Msa0649410-mRNA-1:exon:14503;Parent=Msa0649410-mRNA-1
chr4_3 exon 56052397 56052502 56052397 ID=Msa0649410-mRNA-1:exon:14502;Parent=Msa0649410-mRNA-1
chr4_3 exon 56052643 56052849 56052643 ID=Msa0649410-mRNA-1:exon:14501;Parent=Msa0649410-mRNA-1
chr4_3 exon 56054413 56054498 56054413 ID=Msa0649410-mRNA-1:exon:14500;Parent=Msa0649410-mRNA-1
chr4_3 exon 56054800 56055099 56054800 ID=Msa0649410-mRNA-1:exon:14499;Parent=Msa0649410-mRNA-1
chr4_3 five_prime_UTR 56054974 56055099 56054974 ID=Msa0649410-mRNA-1:five_prime_utr;Parent=Msa0649410-mRNA-1
chr4_3 CDS 56054800 56054973 56054800 ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1
chr4_3 CDS 56054413 56054498 56054413 ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1
chr4_3 CDS 56052643 56052849 56052643 ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1
chr4_3 CDS 56052397 56052502 56052397 ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1
chr4_3 CDS 56052050 56052154 56052050 ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1
chr4_3 CDS 56051786 56051958 56051786 ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1
chr4_3 CDS 56051340 56051499 56051340 ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1
chr4_3 CDS 56050715 56050810 56050715 ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1
chr4_3 CDS 56050384 56050478 56050384 ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1
chr4_3 CDS 56050198 56050270 56050198 ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1
chr4_3 three_prime_UTR 56049835 56050197 56049835 ID=Msa0649410-mRNA-1:three_prime_utr;Parent=Msa0649410-mRNA-1
Gene Sequence

>Msa0649410

ATGGCGATTCGCAATCTTCTCAACGGACAATTTCTCAACCGGAGCTCCGTCACCGGAGCTAGATTCATGTCTTCGTGGTTCAGGAACATCGAACCAGCTCCTAAGGATCCAATCCTCGGAGTTACCGAAGCTTTTCTTGCGGATCAGAGTCCAAACAAAGTTAATGTTGGAGTTGGCGCATATCGGGATGACAATGGAAAGCCTGTGGTTCTTGAATGTGTTAGAGAAGCAGAGAGGAGAATTGCAGGAAACCAATTCATGGAGTATCTTCCCATGGGTGGAAGCATACATATGGTTCAAGAATCACTGAAGCTGGCATATGGAGATGATTCTGAGTTCATCAAGGATAAACGAATAGCTGCAGTTCAGGCTTTATCTGGGACTGGTGCATGTCGACTTTTCGCTGCATTTCAACAGCGATTTCATCCCAACACCCAAATCTATATACCAGTTCCCACCTGGTCCAACCACCATAACATTTGGAGAGATGCTGGCGTGCCAATAAAGACATACCGTTACTATCACCCTGAATCTAAAGGGTTGGATTTTTCTGGACTGATGGATGACATTAAGAGTGCTCCAGACGGTTCTTTCTTTCTGCTTCATGCTTGTGCTCACAATCCTACTGGAGTAGATCCTTCAGAAGAACAATGGAGAGAGATCTCTTCTCAAATGAAGGCTAAAGGTCATTTCCCTTTGTTTGACATGGCATACCAAGGTTTTGCTAGTGGAAATCCAGATAGAGATGTAAAAGCCATCAGGATTTTTGTTGATGATGGTCATTTATTAGGACTTGCTCAATCATATGCAAAAAATATGGGACTGTATGGCCAGAGAGTTGGATGCCTTAGCTTACTTTGCGAAAATGAGAAACAAGCCGTGGCTGTAAAAAGTCAATTGCAATTGATTTCCAGACCCATGTACAGCAATCCACCTCTTCATGGAGCACTTGTCGTTTCAACTGTCCTTGGTGATCCAGACTTGAAGAAGTTGTGGCTTAAAGAAGTCAAGGTTATGGCAGACCGCATCATTGGAATGAGAACTACACTACGAGAGAATTTGGAAAATCTGGGGTCTCCATTGCCATGGAATCACATAACCAATCAGATTGGCATGTTCTGCTACAGCGGGATGACACCAGAACAGGTTGATCGTTTGACGAGCGAGTTTCATATTTACATGACTCGTAATGGTCGTATAAGTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTGGCTAACGCTATCAACGAGGTTACAAAATCAGCCTAA

Protein sequence

>Msa0649410

MAIRNLLNGQFLNRSSVTGARFMSSWFRNIEPAPKDPILGVTEAFLADQSPNKVNVGVGAYRDDNGKPVVLECVREAERRIAGNQFMEYLPMGGSIHMVQESLKLAYGDDSEFIKDKRIAAVQALSGTGACRLFAAFQQRFHPNTQIYIPVPTWSNHHNIWRDAGVPIKTYRYYHPESKGLDFSGLMDDIKSAPDGSFFLLHACAHNPTGVDPSEEQWREISSQMKAKGHFPLFDMAYQGFASGNPDRDVKAIRIFVDDGHLLGLAQSYAKNMGLYGQRVGCLSLLCENEKQAVAVKSQLQLISRPMYSNPPLHGALVVSTVLGDPDLKKLWLKEVKVMADRIIGMRTTLRENLENLGSPLPWNHITNQIGMFCYSGMTPEQVDRLTSEFHIYMTRNGRISMAGLNTGNVGYVANAINEVTKSA*