Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0649410 | XP_024638558.1 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 877 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0649410 | sp|P46643|AAT1_ARATH | 78.873 | 426 | 88 | 1 | 1 | 424 | 5 | 430 | 0.0 | 720 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0649410 | G7JCN3 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 877 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0026660 | Msa0649410 | 0.807173 | 5.751435e-50 | -8.615850e-47 |
Msa0072170 | Msa0649410 | 0.837815 | 4.160917e-57 | -8.615850e-47 |
Msa0090030 | Msa0649410 | 0.811995 | 5.297541e-51 | -8.615850e-47 |
Msa0100800 | Msa0649410 | 0.803377 | 3.588272e-49 | -8.615850e-47 |
Msa0120540 | Msa0649410 | 0.842174 | 3.038285e-58 | -8.615850e-47 |
Msa0608910 | Msa0649410 | 0.927061 | 1.984411e-91 | -8.615850e-47 |
Msa0621240 | Msa0649410 | 0.801212 | 1.001458e-48 | -8.615850e-47 |
Msa0625790 | Msa0649410 | 0.802118 | 6.529292e-49 | -8.615850e-47 |
Msa0628290 | Msa0649410 | 0.809958 | 1.462591e-50 | -8.615850e-47 |
Msa0649410 | Msa0649450 | 0.985470 | 1.151473e-163 | -8.615850e-47 |
Msa0649410 | Msa0663510 | 0.820786 | 5.706933e-53 | -8.615850e-47 |
Msa0649410 | Msa0711490 | 0.810080 | 1.376789e-50 | -8.615850e-47 |
Msa0649410 | Msa0792090 | 0.803947 | 2.733764e-49 | -8.615850e-47 |
Msa0649410 | Msa1010460 | 0.812191 | 4.799928e-51 | -8.615850e-47 |
Msa0649410 | Msa1172130 | -0.827297 | 1.691095e-54 | -8.615850e-47 |
Msa0649410 | Msa1207730 | 0.812919 | 3.327748e-51 | -8.615850e-47 |
Msa0649410 | Msa1272520 | 0.812636 | 3.837552e-51 | -8.615850e-47 |
Msa0649410 | Msa1330890 | -0.805191 | 1.503812e-49 | -8.615850e-47 |
Msa0649410 | Msa1350690 | 0.814762 | 1.306307e-51 | -8.615850e-47 |
Msa0649410 | Msa1360280 | 0.800444 | 1.436957e-48 | -8.615850e-47 |
Msa0649410 | Msa1363700 | 0.816777 | 4.643284e-52 | -8.615850e-47 |
Msa0649410 | Msa1383350 | 0.800544 | 1.371550e-48 | -8.615850e-47 |
Msa0649410 | Msa1393800 | 0.811699 | 6.144878e-51 | -8.615850e-47 |
Msa0649410 | Msa1438450 | 0.810478 | 1.129837e-50 | -8.615850e-47 |
Msa0127040 | Msa0649410 | 0.800051 | 1.727623e-48 | -8.615850e-47 |
Msa0138160 | Msa0649410 | 0.814007 | 1.917975e-51 | -8.615850e-47 |
Msa0145150 | Msa0649410 | 0.826122 | 3.225978e-54 | -8.615850e-47 |
Msa0194720 | Msa0649410 | 0.828665 | 7.924899e-55 | -8.615850e-47 |
Msa0208000 | Msa0649410 | 0.805530 | 1.276888e-49 | -8.615850e-47 |
Msa0223920 | Msa0649410 | 0.807488 | 4.932097e-50 | -8.615850e-47 |
Msa0229360 | Msa0649410 | 0.809585 | 1.759332e-50 | -8.615850e-47 |
Msa0236740 | Msa0649410 | 0.806588 | 7.648823e-50 | -8.615850e-47 |
Msa0436200 | Msa0649410 | 0.801351 | 9.381552e-49 | -8.615850e-47 |
Msa0252240 | Msa0649410 | 0.829705 | 4.433051e-55 | -8.615850e-47 |
Msa0265160 | Msa0649410 | 0.844107 | 9.277834e-59 | -8.615850e-47 |
Msa0266210 | Msa0649410 | 0.820072 | 8.321045e-53 | -8.615850e-47 |
Msa0287670 | Msa0649410 | 0.817085 | 3.960187e-52 | -8.615850e-47 |
Msa0296350 | Msa0649410 | 0.811097 | 8.302981e-51 | -8.615850e-47 |
Msa0303160 | Msa0649410 | 0.810035 | 1.408103e-50 | -8.615850e-47 |
Msa0555400 | Msa0649410 | 0.891575 | 3.506288e-74 | -8.615850e-47 |
Msa0582280 | Msa0649410 | 0.802466 | 5.537329e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0649410 | MtrunA17_Chr4g0041371 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 877 |
Msa0649410 | MtrunA17_Chr4g0041351 | 92.437 | 238 | 18 | 0 | 187 | 424 | 1 | 238 | 4.06e-168 | 471 |
Msa0649410 | MtrunA17_Chr3g0139821 | 51.378 | 399 | 192 | 1 | 25 | 421 | 56 | 454 | 4.94e-147 | 426 |
Msa0649410 | MtrunA17_Chr1g0149721 | 48.354 | 395 | 202 | 2 | 25 | 417 | 63 | 457 | 7.58e-136 | 397 |
Msa0649410 | MtrunA17_Chr4g0041361 | 85.987 | 157 | 16 | 2 | 1 | 156 | 1 | 152 | 3.50e-92 | 275 |
Msa0649410 | MtrunA17_Chr4g0005811 | 54.167 | 48 | 22 | 0 | 296 | 343 | 24 | 71 | 4.04e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0649410 | AT2G30970.1 | 78.873 | 426 | 88 | 1 | 1 | 424 | 5 | 430 | 0.0 | 720 |
Msa0649410 | AT2G30970.2 | 78.873 | 426 | 88 | 1 | 1 | 424 | 5 | 430 | 0.0 | 720 |
Msa0649410 | AT5G19550.1 | 50.503 | 398 | 195 | 1 | 23 | 418 | 1 | 398 | 2.55e-147 | 425 |
Msa0649410 | AT5G11520.1 | 51.741 | 402 | 192 | 1 | 25 | 424 | 47 | 448 | 3.30e-147 | 426 |
Msa0649410 | AT1G62800.1 | 47.619 | 399 | 209 | 0 | 23 | 421 | 1 | 399 | 8.02e-138 | 400 |
Msa0649410 | AT1G62800.2 | 47.382 | 401 | 209 | 1 | 23 | 421 | 1 | 401 | 2.77e-136 | 397 |
Msa0649410 | AT4G31990.1 | 46.135 | 414 | 220 | 3 | 6 | 417 | 33 | 445 | 7.76e-134 | 392 |
Msa0649410 | AT4G31990.2 | 46.135 | 414 | 220 | 3 | 6 | 417 | 33 | 445 | 7.76e-134 | 392 |
Msa0649410 | AT4G31990.3 | 46.135 | 414 | 220 | 3 | 6 | 417 | 33 | 445 | 1.77e-133 | 392 |
Msa0649410 | AT4G31990.4 | 47.342 | 395 | 206 | 2 | 25 | 417 | 46 | 440 | 2.86e-133 | 390 |
Msa0649410 | AT1G62800.3 | 47.493 | 339 | 176 | 1 | 23 | 359 | 1 | 339 | 2.10e-112 | 333 |
Find 133 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGATGATGGTCATTTATT+AGG | 0.163800 | 4_3:-56051846 | Msa0649410:CDS |
GCTGCAGTTCAGGCTTTATC+TGG | 0.203926 | 4_3:-56052730 | Msa0649410:CDS |
AACTACACTACGAGAGAATT+TGG | 0.231543 | 4_3:-56050759 | Msa0649410:CDS |
ACTCCAACATTAACTTTGTT+TGG | 0.243943 | 4_3:+56054801 | None:intergenic |
GTTGCATAATTGAATAATTT+AGG | 0.248563 | 4_3:+56050180 | None:intergenic |
TACCTCAGAAGTAGAATTAT+TGG | 0.248615 | 4_3:-56050126 | Msa0649410:three_prime_UTR |
TACAGTTACAAAGTTAGATT+TGG | 0.270790 | 4_3:-56055029 | Msa0649410:five_prime_UTR |
AAATCCAACCCTTTAGATTC+AGG | 0.281836 | 4_3:+56052422 | None:intergenic |
TGGGAACTGGTATATAGATT+TGG | 0.284181 | 4_3:+56052653 | None:intergenic |
TGGACTGATGGATGACATTA+AGG | 0.291323 | 4_3:-56052396 | Msa0649410:intron |
AAAACTTGACTCACATGAAT+TGG | 0.295790 | 4_3:+56054399 | None:intergenic |
ACGAGAGAATTTGGAAAATC+TGG | 0.306043 | 4_3:-56050750 | Msa0649410:CDS |
GATTCATGTCTTCGTGGTTC+AGG | 0.309930 | 4_3:-56054890 | Msa0649410:CDS |
TGAGAAGTAGATTGAATAAG+AGG | 0.318062 | 4_3:-56050018 | Msa0649410:three_prime_UTR |
TAGTAACGGTATGTCTTTAT+TGG | 0.320777 | 4_3:+56052449 | None:intergenic |
AGCCACAACTTCTTCAAGTC+TGG | 0.343190 | 4_3:+56051353 | None:intergenic |
TACAGCAATCCACCTCTTCA+TGG | 0.366324 | 4_3:-56051407 | Msa0649410:CDS |
GAAGCAGAGAGGAGAATTGC+AGG | 0.369047 | 4_3:-56054425 | Msa0649410:CDS |
TTAGTCTCAATCAACTTATA+AGG | 0.370879 | 4_3:+56049873 | None:intergenic |
GTCAAACGATCAACCTGTTC+TGG | 0.382951 | 4_3:+56050426 | None:intergenic |
AATTATAACAGGGCGCATAT+CGG | 0.387711 | 4_3:-56054487 | Msa0649410:intron |
TGACTCGTAATGGTCGTATA+AGG | 0.390208 | 4_3:-56050383 | Msa0649410:intron |
ATTACAGCCACCATAACATT+TGG | 0.393881 | 4_3:-56052487 | Msa0649410:intron |
GGGAACTGGTATATAGATTT+GGG | 0.398341 | 4_3:+56052654 | None:intergenic |
TAAACGAATAGCTGCAGTTC+AGG | 0.408353 | 4_3:-56052740 | Msa0649410:CDS |
TCAACGGACAATTTCTCAAC+CGG | 0.420413 | 4_3:-56054932 | Msa0649410:CDS |
CATATTTACATGACTCGTAA+TGG | 0.427237 | 4_3:-56050393 | Msa0649410:CDS |
CAGCATCTCTCCAAATGTTA+TGG | 0.427253 | 4_3:+56052477 | None:intergenic |
GACTTGGACCAGGTGGGAAC+TGG | 0.436048 | 4_3:+56052640 | None:intergenic |
CTTGTCGTTTCAACTGTCCT+TGG | 0.436753 | 4_3:-56051380 | Msa0649410:CDS |
CAGTATGGCTGGTCTTAATA+CGG | 0.443084 | 4_3:-56050251 | Msa0649410:CDS |
GAATCACTGAAGCTGGCATA+TGG | 0.444094 | 4_3:-56052787 | Msa0649410:CDS |
ATTATAACAGGGCGCATATC+GGG | 0.453076 | 4_3:-56054486 | Msa0649410:intron |
CGAGAGAATTTGGAAAATCT+GGG | 0.454321 | 4_3:-56050749 | Msa0649410:CDS |
GTTATGGCAGACCGCATCAT+TGG | 0.454392 | 4_3:-56050788 | Msa0649410:CDS |
TGGTATATAGATTTGGGTGT+TGG | 0.456286 | 4_3:+56052660 | None:intergenic |
TATGATTGTTTGCAGGCTAA+AGG | 0.462192 | 4_3:-56051951 | Msa0649410:intron |
TGGATTGCTGTACATGGGTC+TGG | 0.465606 | 4_3:+56051418 | None:intergenic |
TGCATTCAACTGAACCTGAT+TGG | 0.467234 | 4_3:+56050700 | None:intergenic |
GCTTGTGCTCACAATCCTAC+TGG | 0.469061 | 4_3:-56052099 | Msa0649410:CDS |
AATCCAACCCTTTAGATTCA+GGG | 0.470231 | 4_3:+56052423 | None:intergenic |
TTTCATTTCCTCTGTTTCCA+TGG | 0.471629 | 4_3:-56054970 | Msa0649410:exon |
TCTCTCCATTGTTCTTCTGA+AGG | 0.474653 | 4_3:+56052069 | None:intergenic |
CAGCGGGATGACACCAGAAC+AGG | 0.474884 | 4_3:-56050439 | Msa0649410:CDS |
GTTCAGGCTTTATCTGGGAC+TGG | 0.478849 | 4_3:-56052724 | Msa0649410:CDS |
TACTATCACCCTGAATCTAA+AGG | 0.480649 | 4_3:-56052431 | Msa0649410:CDS |
GGAGGGAGCTGAATAAAAGT+TGG | 0.480734 | 4_3:-56050105 | Msa0649410:three_prime_UTR |
ACTATCACCCTGAATCTAAA+GGG | 0.481415 | 4_3:-56052430 | Msa0649410:CDS |
GGTATATAGATTTGGGTGTT+GGG | 0.481546 | 4_3:+56052661 | None:intergenic |
ACTCCGAGGATTGGATCCTT+AGG | 0.493438 | 4_3:+56054852 | None:intergenic |
ATGGAATCACATAACCAATC+AGG | 0.493504 | 4_3:-56050714 | Msa0649410:intron |
TAGCTCCGGTGACGGAGCTC+CGG | 0.500615 | 4_3:+56054913 | None:intergenic |
GCAAATGAAACAAAGGGAAA+AGG | 0.502975 | 4_3:+56050062 | None:intergenic |
GCTTCGGTAACTCCGAGGAT+TGG | 0.504812 | 4_3:+56054843 | None:intergenic |
GAGCAGGGAGTATCTTCCCA+TGG | 0.505060 | 4_3:-56052833 | Msa0649410:intron |
CTGATCCGCAAGAAAAGCTT+CGG | 0.505274 | 4_3:+56054827 | None:intergenic |
ATTGAGACTAATGATTAATG+AGG | 0.509902 | 4_3:-56049861 | Msa0649410:three_prime_UTR |
ACCTAAGGCATCCAACTCTC+TGG | 0.511639 | 4_3:+56051784 | None:intergenic |
GAACATCGAACCAGCTCCTA+AGG | 0.511927 | 4_3:-56054868 | Msa0649410:CDS |
CTGCAGTTCAGGCTTTATCT+GGG | 0.514039 | 4_3:-56052729 | Msa0649410:CDS |
CATGGGTGGAAGCATACATA+TGG | 0.514364 | 4_3:-56052815 | Msa0649410:CDS |
TGTTATCATGACAGTATGGC+TGG | 0.514770 | 4_3:-56050262 | Msa0649410:intron |
CTCAACCGGAGCTCCGTCAC+CGG | 0.515163 | 4_3:-56054918 | Msa0649410:CDS |
CATAACATTTGGAGAGATGC+TGG | 0.515488 | 4_3:-56052476 | Msa0649410:CDS |
TACGGGCAACGTTGGATATG+TGG | 0.515504 | 4_3:-56050233 | Msa0649410:CDS |
CATATGTATGCTTCCACCCA+TGG | 0.520422 | 4_3:+56052816 | None:intergenic |
AGGATTGGATCCTTAGGAGC+TGG | 0.523663 | 4_3:+56054858 | None:intergenic |
TCATTTCCCTTTGTTTGACA+TGG | 0.525399 | 4_3:-56051928 | Msa0649410:CDS |
GGTTCAAGAATCACTGAAGC+TGG | 0.525800 | 4_3:-56052794 | Msa0649410:CDS |
ATAGAGATGTAAAAGCCATC+AGG | 0.526430 | 4_3:-56051875 | Msa0649410:CDS |
GAGCTAGATTCATGTCTTCG+TGG | 0.529355 | 4_3:-56054896 | Msa0649410:CDS |
AGTCCAAACAAAGTTAATGT+TGG | 0.529361 | 4_3:-56054804 | Msa0649410:CDS |
GAGGGAGCTGAATAAAAGTT+GGG | 0.530751 | 4_3:-56050104 | Msa0649410:three_prime_UTR |
AGCAGGGAGTATCTTCCCAT+GGG | 0.532326 | 4_3:-56052832 | Msa0649410:intron |
AAGAGGTGGATTGCTGTACA+TGG | 0.536615 | 4_3:+56051412 | None:intergenic |
AGCAGAAAGAAAGAACCGTC+TGG | 0.539208 | 4_3:+56052126 | None:intergenic |
TGAGGTATTTGTCGTTCCAA+AGG | 0.545379 | 4_3:+56050142 | None:intergenic |
ATCCAGACTTGAAGAAGTTG+TGG | 0.545968 | 4_3:-56051355 | Msa0649410:CDS |
CGAATCGCAAATGAAACAAA+GGG | 0.547414 | 4_3:+56050056 | None:intergenic |
TCACCCTGAATCTAAAGGGT+TGG | 0.547557 | 4_3:-56052426 | Msa0649410:CDS |
ATCTGGGGTCTCCATTGCCA+TGG | 0.550492 | 4_3:-56050733 | Msa0649410:CDS |
GAGAAGATTGCGAATCGCCA+TGG | 0.553263 | 4_3:+56054953 | None:intergenic |
GGACTGTATGGCCAGAGAGT+TGG | 0.555960 | 4_3:-56051795 | Msa0649410:CDS |
GGTATGCCATGTCAAACAAA+GGG | 0.556105 | 4_3:+56051922 | None:intergenic |
AGAGATCTCTTCTCAAATGA+AGG | 0.556653 | 4_3:-56052049 | Msa0649410:intron |
CTCCAATAATTCTACTTCTG+AGG | 0.561476 | 4_3:+56050124 | None:intergenic |
TTGGCATGTTCTGCTACAGC+GGG | 0.561910 | 4_3:-56050455 | Msa0649410:CDS |
GATTTCCACTAGCAAAACCT+TGG | 0.563864 | 4_3:+56051901 | None:intergenic |
CTAACACATTCAAGAACCAC+AGG | 0.564027 | 4_3:+56054449 | None:intergenic |
AGTATGGCTGGTCTTAATAC+GGG | 0.570434 | 4_3:-56050250 | Msa0649410:CDS |
TCGAATCGCAAATGAAACAA+AGG | 0.571062 | 4_3:+56050055 | None:intergenic |
GCCAGAGAGTTGGATGCCTT+AGG | 0.572080 | 4_3:-56051785 | Msa0649410:intron |
TCTGAAGGATCTACTCCAGT+AGG | 0.572848 | 4_3:+56052084 | None:intergenic |
GGTCTTAATACGGGCAACGT+TGG | 0.573230 | 4_3:-56050241 | Msa0649410:CDS |
CTCAGAAGTAGAATTATTGG+AGG | 0.576823 | 4_3:-56050123 | Msa0649410:three_prime_UTR |
TGGTATGCCATGTCAAACAA+AGG | 0.578691 | 4_3:+56051921 | None:intergenic |
GTTATGTGATTCCATGGCAA+TGG | 0.584912 | 4_3:+56050722 | None:intergenic |
TAAAACAGAATGTGTTCACT+AGG | 0.590872 | 4_3:+56055004 | None:intergenic |
GCTCCTAAGGATCCAATCCT+CGG | 0.593427 | 4_3:-56054855 | Msa0649410:CDS |
TAGATTCAGGGTGATAGTAA+CGG | 0.595480 | 4_3:+56052435 | None:intergenic |
CATGAATCTAGCTCCGGTGA+CGG | 0.597404 | 4_3:+56054905 | None:intergenic |
TCTATATACCAGTTCCCACC+TGG | 0.597915 | 4_3:-56052648 | Msa0649410:CDS |
TTGAGACTAATGATTAATGA+GGG | 0.598034 | 4_3:-56049860 | Msa0649410:three_prime_UTR |
CATCTCTCCAAATGTTATGG+TGG | 0.599838 | 4_3:+56052480 | None:intergenic |
TGATTGGTTATGTGATTCCA+TGG | 0.602248 | 4_3:+56050716 | None:intergenic |
CGAAGACATGAATCTAGCTC+CGG | 0.602634 | 4_3:+56054899 | None:intergenic |
GTTGTGGCTTAAAGAAGTCA+AGG | 0.603954 | 4_3:-56051339 | Msa0649410:intron |
ATTGGCATGTTCTGCTACAG+CGG | 0.606237 | 4_3:-56050456 | Msa0649410:CDS |
TAGATCCTTCAGAAGAACAA+TGG | 0.608072 | 4_3:-56052074 | Msa0649410:CDS |
ATATGTATGCTTCCACCCAT+GGG | 0.618917 | 4_3:+56052817 | None:intergenic |
GGCGCATATCGGGATGACAA+TGG | 0.620903 | 4_3:-56054476 | Msa0649410:CDS |
TTGTTTGACATGGCATACCA+AGG | 0.620915 | 4_3:-56051918 | Msa0649410:CDS |
ACGACAAGTGCTCCATGAAG+AGG | 0.624499 | 4_3:+56051395 | None:intergenic |
AGATGATTCTGAGTTCATCA+AGG | 0.634967 | 4_3:-56052764 | Msa0649410:CDS |
ACAAGTGCTCCATGAAGAGG+TGG | 0.644744 | 4_3:+56051398 | None:intergenic |
GCGAATCGCCATGGAAACAG+AGG | 0.646344 | 4_3:+56054962 | None:intergenic |
GAATACTGACTTGGACCAGG+TGG | 0.647698 | 4_3:+56052633 | None:intergenic |
TAGTTCTCATTCCAATGATG+CGG | 0.649874 | 4_3:+56050777 | None:intergenic |
TCAGAAGTAGAATTATTGGA+GGG | 0.651730 | 4_3:-56050122 | Msa0649410:three_prime_UTR |
ATTGAATACTGACTTGGACC+AGG | 0.652138 | 4_3:+56052630 | None:intergenic |
AGGGAGTATCTTCCCATGGG+TGG | 0.652799 | 4_3:-56052829 | Msa0649410:CDS |
AATACTGACTTGGACCAGGT+GGG | 0.664893 | 4_3:+56052634 | None:intergenic |
GCGATTCGCAATCTTCTCAA+CGG | 0.664921 | 4_3:-56054948 | Msa0649410:CDS |
GGATGACAATGGAAAGCCTG+TGG | 0.668054 | 4_3:-56054465 | Msa0649410:CDS |
CGAAAATGAGAAACAAGCCG+TGG | 0.673088 | 4_3:-56051468 | Msa0649410:CDS |
GAGAGAATTTGGAAAATCTG+GGG | 0.676096 | 4_3:-56050748 | Msa0649410:CDS |
AGACTAATGATTAATGAGGG+CGG | 0.684129 | 4_3:-56049857 | Msa0649410:three_prime_UTR |
CTTACACAGAGTGCTCCAGA+CGG | 0.687623 | 4_3:-56052141 | Msa0649410:intron |
GAAAAGCTTCGGTAACTCCG+AGG | 0.698605 | 4_3:+56054838 | None:intergenic |
AATGTGTTAGAGAAGCAGAG+AGG | 0.730380 | 4_3:-56054436 | Msa0649410:CDS |
AGAGGTGGATTGCTGTACAT+GGG | 0.738190 | 4_3:+56051413 | None:intergenic |
TCTTCAAGTCTGGATCACCA+AGG | 0.760746 | 4_3:+56051363 | None:intergenic |
TGTGGCTAACGCTATCAACG+AGG | 0.769825 | 4_3:-56050215 | Msa0649410:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CAAGTTTTTTTTTTTTTTTT+TGG | - | chr4_3:56050528-56050547 | Msa0649410:intron | 10.0% |
!! | TTAACAAAAAAAATATTTGA+AGG | + | chr4_3:56050715-56050734 | None:intergenic | 10.0% |
!!! | AAATAAATATTTGTTATTTG+TGG | + | chr4_3:56050931-56050950 | None:intergenic | 10.0% |
!!! | AAATATATAATTTCTACTTT+TGG | - | chr4_3:56050998-56051017 | Msa0649410:intron | 10.0% |
!!! | TTTTTTCAACTTTATTTAAT+GGG | - | chr4_3:56051071-56051090 | Msa0649410:intron | 10.0% |
!!! | AAACTTTGAAATATTTTTTT+GGG | + | chr4_3:56051477-56051496 | None:intergenic | 10.0% |
!! | AAATAAAACTTAATTTCTTA+TGG | - | chr4_3:56051908-56051927 | Msa0649410:CDS | 10.0% |
!! | TATATTAATATAGAATAACA+TGG | + | chr4_3:56053976-56053995 | None:intergenic | 10.0% |
!! | AATAGTTGTTGTAATAATAA+TGG | - | chr4_3:56050620-56050639 | Msa0649410:intron | 15.0% |
!!! | GTTTTTTCAACTTTATTTAA+TGG | - | chr4_3:56051070-56051089 | Msa0649410:intron | 15.0% |
!! | TTTCAAAGATAAATATTTGT+GGG | - | chr4_3:56051324-56051343 | Msa0649410:intron | 15.0% |
!!! | GAAACTTTGAAATATTTTTT+TGG | + | chr4_3:56051478-56051497 | None:intergenic | 15.0% |
!!! | TTAATATCATTTTAAAACAG+TGG | + | chr4_3:56051871-56051890 | None:intergenic | 15.0% |
!!! | TTATACCATAAAGTTTTTTA+GGG | + | chr4_3:56053680-56053699 | None:intergenic | 15.0% |
!!! | TTTATACCATAAAGTTTTTT+AGG | + | chr4_3:56053681-56053700 | None:intergenic | 15.0% |
!! | TGATTTACTAAATTTAAGAA+TGG | + | chr4_3:56054024-56054043 | None:intergenic | 15.0% |
!!! | CCAAATAATAATCATTTTTA+CGG | + | chr4_3:56054954-56054973 | None:intergenic | 15.0% |
!!! | TTTGATTTGCAAATTATAAC+AGG | - | chr4_3:56050414-56050433 | Msa0649410:CDS | 20.0% |
!!! | TTGATTTGCAAATTATAACA+GGG | - | chr4_3:56050415-56050434 | Msa0649410:CDS | 20.0% |
!!! | TTAATGCTAACATTGATTTT+AGG | - | chr4_3:56050551-56050570 | Msa0649410:intron | 20.0% |
!!! | TGTAATTTGTTTCTTTCTTT+AGG | - | chr4_3:56051250-56051269 | Msa0649410:intron | 20.0% |
!! | GTTTCAAAGATAAATATTTG+TGG | - | chr4_3:56051323-56051342 | Msa0649410:intron | 20.0% |
!! | TTCAAAGATAAATATTTGTG+GGG | - | chr4_3:56051325-56051344 | Msa0649410:intron | 20.0% |
!! | CTAACCTACTAAAAATTTAA+GGG | + | chr4_3:56051383-56051402 | None:intergenic | 20.0% |
!!! | TCTCACTTTTAGAAATATTT+TGG | + | chr4_3:56051568-56051587 | None:intergenic | 20.0% |
!! | CTTTAATTAATCTACAAGAA+TGG | - | chr4_3:56051779-56051798 | Msa0649410:intron | 20.0% |
!! | ATTACAAGATCAATAATTCT+AGG | + | chr4_3:56052398-56052417 | None:intergenic | 20.0% |
!! | AATAATTAAAGTGAGACTAA+TGG | + | chr4_3:56052707-56052726 | None:intergenic | 20.0% |
!! | TAAGAAATAACCAATTTAAG+AGG | + | chr4_3:56052755-56052774 | None:intergenic | 20.0% |
!! | TCAATCATATGCAAAAAATA+TGG | - | chr4_3:56053095-56053114 | Msa0649410:intron | 20.0% |
!! | CAATCATATGCAAAAAATAT+GGG | - | chr4_3:56053096-56053115 | Msa0649410:intron | 20.0% |
!! | CTAATACTAATCAATAAGAA+TGG | + | chr4_3:56053161-56053180 | None:intergenic | 20.0% |
!!! | CATTCTTATTGATTAGTATT+AGG | - | chr4_3:56053159-56053178 | Msa0649410:intron | 20.0% |
!! | AATGATATGTATGTAAACAT+TGG | - | chr4_3:56053309-56053328 | Msa0649410:intron | 20.0% |
!!! | TTTTTCCCTAAAAAACTTTA+TGG | - | chr4_3:56053672-56053691 | Msa0649410:intron | 20.0% |
!! | ATATATAAGAAAAAAGTCTG+AGG | + | chr4_3:56053880-56053899 | None:intergenic | 20.0% |
!! | TGTCTTCTTAAATTATCATT+TGG | + | chr4_3:56054001-56054020 | None:intergenic | 20.0% |
!! | GTTGCATAATTGAATAATTT+AGG | + | chr4_3:56054735-56054754 | None:intergenic | 20.0% |
!! | CCGTAAAAATGATTATTATT+TGG | - | chr4_3:56054951-56054970 | Msa0649410:CDS | 20.0% |
! | TACAGTTACAAAGTTAGATT+TGG | - | chr4_3:56049883-56049902 | Msa0649410:three_prime_UTR | 25.0% |
! | AGCATCTAACTTTAGTTAAA+AGG | - | chr4_3:56050841-56050860 | Msa0649410:intron | 25.0% |
! | ATTTGTGGAATTCTTAACAT+TGG | + | chr4_3:56050916-56050935 | None:intergenic | 25.0% |
!! | TTTCTTTCTTTAGGTGTTTT+GGG | - | chr4_3:56051259-56051278 | Msa0649410:intron | 25.0% |
! | CAATAAAAATTTAAGGGATG+CGG | + | chr4_3:56051352-56051371 | None:intergenic | 25.0% |
! | TACTAAAAATTTAAGGGATG+CGG | + | chr4_3:56051377-56051396 | None:intergenic | 25.0% |
! | CCTAACCTACTAAAAATTTA+AGG | + | chr4_3:56051384-56051403 | None:intergenic | 25.0% |
!!! | CCTTAAATTTTTAGTAGGTT+AGG | - | chr4_3:56051381-56051400 | Msa0649410:CDS | 25.0% |
!!! | ATTTTTAGTAGGTTAGGTAT+TGG | - | chr4_3:56051387-56051406 | Msa0649410:CDS | 25.0% |
!!! | TAATTGGTTTTGTAGAATGT+GGG | - | chr4_3:56051435-56051454 | Msa0649410:CDS | 25.0% |
! | CTTTCTGTTAGAAAAAAGTA+CGG | - | chr4_3:56051526-56051545 | Msa0649410:intron | 25.0% |
!! | AAAAGTACGGATAATTAATC+AGG | - | chr4_3:56051539-56051558 | Msa0649410:intron | 25.0% |
! | AAATCAATGGCAGTATTTAA+AGG | + | chr4_3:56052317-56052336 | None:intergenic | 25.0% |
! | TTTGATATTTCGTAGATATC+TGG | - | chr4_3:56052372-56052391 | Msa0649410:intron | 25.0% |
! | CATGTTAAAAGATAGAGTTA+TGG | + | chr4_3:56053256-56053275 | None:intergenic | 25.0% |
!!! | TTTTTTAGGGAAAAAAGCAA+AGG | + | chr4_3:56053667-56053686 | None:intergenic | 25.0% |
! | CAATGCTCAATTAACATAAT+TGG | - | chr4_3:56053916-56053935 | Msa0649410:intron | 25.0% |
! | AGAAAATGAACTTACATAGA+TGG | - | chr4_3:56054090-56054109 | Msa0649410:intron | 25.0% |
! | ACCATAAAAATAAGAGAGAA+GGG | + | chr4_3:56054301-56054320 | None:intergenic | 25.0% |
! | AACCATAAAAATAAGAGAGA+AGG | + | chr4_3:56054302-56054321 | None:intergenic | 25.0% |
!!! | CTCTTATTTTTATGGTTACT+TGG | - | chr4_3:56054305-56054324 | Msa0649410:intron | 25.0% |
!! | CAAAGTGTTAAAAACTTAGT+TGG | - | chr4_3:56054395-56054414 | Msa0649410:intron | 25.0% |
! | AACTCATAGTATAAGAGAAA+TGG | + | chr4_3:56054590-56054609 | None:intergenic | 25.0% |
! | TATATGTTATCATGACAGTA+TGG | - | chr4_3:56054646-56054665 | Msa0649410:intron | 25.0% |
! | TTAGTCTCAATCAACTTATA+AGG | + | chr4_3:56055042-56055061 | None:intergenic | 25.0% |
! | ATTGAGACTAATGATTAATG+AGG | - | chr4_3:56055051-56055070 | Msa0649410:five_prime_UTR | 25.0% |
! | TTGAGACTAATGATTAATGA+GGG | - | chr4_3:56055052-56055071 | Msa0649410:five_prime_UTR | 25.0% |
TAAAACAGAATGTGTTCACT+AGG | + | chr4_3:56049911-56049930 | None:intergenic | 30.0% | |
AGTCCAAACAAAGTTAATGT+TGG | - | chr4_3:56050108-56050127 | Msa0649410:three_prime_UTR | 30.0% | |
ACTCCAACATTAACTTTGTT+TGG | + | chr4_3:56050114-56050133 | None:intergenic | 30.0% | |
AAAACTTGACTCACATGAAT+TGG | + | chr4_3:56050516-56050535 | None:intergenic | 30.0% | |
CGTACATAGAAACTTTAGTT+GGG | - | chr4_3:56050818-56050837 | Msa0649410:intron | 30.0% | |
ACATTGGACAAATGTTAACA+TGG | + | chr4_3:56050900-56050919 | None:intergenic | 30.0% | |
!!! | TTTCATGTGCCATTTTTTTG+TGG | - | chr4_3:56051105-56051124 | Msa0649410:intron | 30.0% |
! | GTTTCTTTCTTTAGGTGTTT+TGG | - | chr4_3:56051258-56051277 | Msa0649410:intron | 30.0% |
AAAAGCAGCATCAATAAAAC+AGG | + | chr4_3:56051299-56051318 | None:intergenic | 30.0% | |
! | CGCATCCCTTAAATTTTTAT+TGG | - | chr4_3:56051350-56051369 | Msa0649410:CDS | 30.0% |
GCGGACCAATAAAAATTTAA+GGG | + | chr4_3:56051358-56051377 | None:intergenic | 30.0% | |
TGCGGACCAATAAAAATTTA+AGG | + | chr4_3:56051359-56051378 | None:intergenic | 30.0% | |
!!! | GCATCCCTTAAATTTTTAGT+AGG | - | chr4_3:56051376-56051395 | Msa0649410:CDS | 30.0% |
ATGACCGAAATTCATAGTAA+CGG | - | chr4_3:56051410-56051429 | Msa0649410:CDS | 30.0% | |
TACTCCGTTACTATGAATTT+CGG | + | chr4_3:56051417-56051436 | None:intergenic | 30.0% | |
! | ATTCATAGTAACGGAGTAAT+TGG | - | chr4_3:56051419-56051438 | Msa0649410:CDS | 30.0% |
!!! | GTAATTGGTTTTGTAGAATG+TGG | - | chr4_3:56051434-56051453 | Msa0649410:CDS | 30.0% |
!!! | CGTACTTTTTTCTAACAGAA+AGG | + | chr4_3:56051528-56051547 | None:intergenic | 30.0% |
TCTAAAAGTGAGAAGAAAAC+TGG | - | chr4_3:56051575-56051594 | Msa0649410:intron | 30.0% | |
TTACAGCTTATAGCACAAAT+AGG | - | chr4_3:56051620-56051639 | Msa0649410:intron | 30.0% | |
! | TTTAAAACAGTGGCGATAAA+AGG | + | chr4_3:56051861-56051880 | None:intergenic | 30.0% |
TTTCAGGAGAATGTTACTAA+GGG | + | chr4_3:56051997-56052016 | None:intergenic | 30.0% | |
GTAGTGTAAAAAACTGTTTC+AGG | + | chr4_3:56052013-56052032 | None:intergenic | 30.0% | |
! | ATTTGGATTGAATACTGACT+TGG | + | chr4_3:56052291-56052310 | None:intergenic | 30.0% |
GCAGTATTTAAAGGAAGATT+TGG | + | chr4_3:56052308-56052327 | None:intergenic | 30.0% | |
TTCTGTAGACTCAAAATCAA+TGG | + | chr4_3:56052330-56052349 | None:intergenic | 30.0% | |
TAGTAACGGTATGTCTTTAT+TGG | + | chr4_3:56052466-56052485 | None:intergenic | 30.0% | |
ACTCTTCTTACCTCTTAAAT+TGG | - | chr4_3:56052742-56052761 | Msa0649410:CDS | 30.0% | |
TCTTCTCAAATGAAGGTTAA+AGG | - | chr4_3:56052870-56052889 | Msa0649410:intron | 30.0% | |
ATCATCAACAAAAATCCTGA+TGG | + | chr4_3:56053055-56053074 | None:intergenic | 30.0% | |
!! | ATCAGGATTTTTGTTGATGA+TGG | - | chr4_3:56053054-56053073 | Msa0649410:intron | 30.0% |
!! | GTTGATGATGGTCATTTATT+AGG | - | chr4_3:56053066-56053085 | Msa0649410:intron | 30.0% |
AGTCATAAGTGTTATCTTTG+CGG | + | chr4_3:56053400-56053419 | None:intergenic | 30.0% | |
GCATACTGCAGAATTATATA+TGG | + | chr4_3:56053706-56053725 | None:intergenic | 30.0% | |
!!! | TGCAGTATGCTATTTTTCTA+AGG | - | chr4_3:56053716-56053735 | Msa0649410:intron | 30.0% |
!!! | AGTATGCTATTTTTCTAAGG+TGG | - | chr4_3:56053719-56053738 | Msa0649410:intron | 30.0% |
AATGAAATTCATCCAATCCT+AGG | - | chr4_3:56053842-56053861 | Msa0649410:intron | 30.0% | |
GCACAGAAAATAAGAAAAAG+TGG | + | chr4_3:56054249-56054268 | None:intergenic | 30.0% | |
CCATAAAAATAAGAGAGAAG+GGG | + | chr4_3:56054300-56054319 | None:intergenic | 30.0% | |
CATATTTACATGACTCGTAA+TGG | - | chr4_3:56054519-56054538 | Msa0649410:intron | 30.0% | |
TCTCTTATACTATGAGTTCT+TGG | - | chr4_3:56054592-56054611 | Msa0649410:intron | 30.0% | |
! | CATACCAAATTTTTGTCCTT+TGG | - | chr4_3:56054754-56054773 | Msa0649410:intron | 30.0% |
TACCTCAGAAGTAGAATTAT+TGG | - | chr4_3:56054786-56054805 | Msa0649410:intron | 30.0% | |
TCAGAAGTAGAATTATTGGA+GGG | - | chr4_3:56054790-56054809 | Msa0649410:intron | 30.0% | |
TGAGAAGTAGATTGAATAAG+AGG | - | chr4_3:56054894-56054913 | Msa0649410:CDS | 30.0% | |
! | TGATTTTGTTGATGCTAGAA+CGG | - | chr4_3:56054987-56055006 | Msa0649410:five_prime_UTR | 30.0% |
TTTCATTTCCTCTGTTTCCA+TGG | - | chr4_3:56049942-56049961 | Msa0649410:three_prime_UTR | 35.0% | |
AATTATAACAGGGCGCATAT+CGG | - | chr4_3:56050425-56050444 | Msa0649410:CDS | 35.0% | |
GCGTACATAGAAACTTTAGT+TGG | - | chr4_3:56050817-56050836 | Msa0649410:intron | 35.0% | |
! | ACTTTTGGTATACCAACATG+TGG | - | chr4_3:56051013-56051032 | Msa0649410:intron | 35.0% |
ACGTGATCACCACAAAAAAA+TGG | + | chr4_3:56051117-56051136 | None:intergenic | 35.0% | |
!!! | AGTTTGCTTTTTTGGTACGT+TGG | - | chr4_3:56051150-56051169 | Msa0649410:intron | 35.0% |
CTACAAGAATGGTATGAGAT+TGG | - | chr4_3:56051790-56051809 | Msa0649410:CDS | 35.0% | |
AAGAATGGTATGAGATTGGA+CGG | - | chr4_3:56051794-56051813 | Msa0649410:CDS | 35.0% | |
ACGGTTAAGATCAATTACTG+CGG | - | chr4_3:56051813-56051832 | Msa0649410:CDS | 35.0% | |
!! | TATTAGAAGCTTGTTGACCA+AGG | + | chr4_3:56051970-56051989 | None:intergenic | 35.0% |
GTTTCAGGAGAATGTTACTA+AGG | + | chr4_3:56051998-56052017 | None:intergenic | 35.0% | |
AGATGATTCTGAGTTCATCA+AGG | - | chr4_3:56052148-56052167 | Msa0649410:intron | 35.0% | |
GGTATATAGATTTGGGTGTT+GGG | + | chr4_3:56052254-56052273 | None:intergenic | 35.0% | |
TGGTATATAGATTTGGGTGT+TGG | + | chr4_3:56052255-56052274 | None:intergenic | 35.0% | |
GGGAACTGGTATATAGATTT+GGG | + | chr4_3:56052261-56052280 | None:intergenic | 35.0% | |
TGGGAACTGGTATATAGATT+TGG | + | chr4_3:56052262-56052281 | None:intergenic | 35.0% | |
ATTACAGCCACCATAACATT+TGG | - | chr4_3:56052425-56052444 | Msa0649410:CDS | 35.0% | |
TAGATTCAGGGTGATAGTAA+CGG | + | chr4_3:56052480-56052499 | None:intergenic | 35.0% | |
TACTATCACCCTGAATCTAA+AGG | - | chr4_3:56052481-56052500 | Msa0649410:CDS | 35.0% | |
ACTATCACCCTGAATCTAAA+GGG | - | chr4_3:56052482-56052501 | Msa0649410:CDS | 35.0% | |
AATCCAACCCTTTAGATTCA+GGG | + | chr4_3:56052492-56052511 | None:intergenic | 35.0% | |
AAATCCAACCCTTTAGATTC+AGG | + | chr4_3:56052493-56052512 | None:intergenic | 35.0% | |
! | TCTAAAGGGTTGGATTTTTC+TGG | - | chr4_3:56052496-56052515 | Msa0649410:intron | 35.0% |
GAGTCATGTATAAAGTGTGT+CGG | + | chr4_3:56052569-56052588 | None:intergenic | 35.0% | |
!! | GCTGTGTTACTATCTACTTT+TGG | - | chr4_3:56052592-56052611 | Msa0649410:intron | 35.0% |
!! | CTATCTACTTTTGGTCTATG+AGG | - | chr4_3:56052601-56052620 | Msa0649410:intron | 35.0% |
AGTTTGACATTGTAACCTCT+AGG | - | chr4_3:56052642-56052661 | Msa0649410:intron | 35.0% | |
GTTTGACATTGTAACCTCTA+GGG | - | chr4_3:56052643-56052662 | Msa0649410:CDS | 35.0% | |
! | ATTTTACAACCGTCTTTGAC+GGG | + | chr4_3:56052682-56052701 | None:intergenic | 35.0% |
! | CATTTTACAACCGTCTTTGA+CGG | + | chr4_3:56052683-56052702 | None:intergenic | 35.0% |
TAGATCCTTCAGAAGAACAA+TGG | - | chr4_3:56052838-56052857 | Msa0649410:intron | 35.0% | |
AGAGATCTCTTCTCAAATGA+AGG | - | chr4_3:56052863-56052882 | Msa0649410:intron | 35.0% | |
TCATTGCTATGATTGTTTGC+AGG | - | chr4_3:56052954-56052973 | Msa0649410:intron | 35.0% | |
TATGATTGTTTGCAGGCTAA+AGG | - | chr4_3:56052961-56052980 | Msa0649410:intron | 35.0% | |
! | TCATTTCCCTTTGTTTGACA+TGG | - | chr4_3:56052984-56053003 | Msa0649410:intron | 35.0% |
! | ATGGCTTTTACATCTCTATC+TGG | + | chr4_3:56053036-56053055 | None:intergenic | 35.0% |
ATAGAGATGTAAAAGCCATC+AGG | - | chr4_3:56053037-56053056 | Msa0649410:intron | 35.0% | |
GCAAAAAATATGGGACTGTA+TGG | - | chr4_3:56053105-56053124 | Msa0649410:intron | 35.0% | |
AAGAATGGTCTACTTACCTA+AGG | + | chr4_3:56053146-56053165 | None:intergenic | 35.0% | |
TTAGTATTAGGCCAAAGAGT+TGG | - | chr4_3:56053171-56053190 | Msa0649410:intron | 35.0% | |
!! | CAATTGACTTTTTACAGCCA+CGG | + | chr4_3:56053464-56053483 | None:intergenic | 35.0% |
! | GGGGAGTAAAACTTTTATAG+AGG | + | chr4_3:56053633-56053652 | None:intergenic | 35.0% |
!!! | GCTATTTTTCTAAGGTGGAA+TGG | - | chr4_3:56053724-56053743 | Msa0649410:intron | 35.0% |
CTGTTAATCATTAGTGACTG+AGG | - | chr4_3:56053770-56053789 | Msa0649410:intron | 35.0% | |
TCAAAAAGTAAGCCTAGGAT+TGG | + | chr4_3:56053857-56053876 | None:intergenic | 35.0% | |
GCATGAATAAGTTGTAGCAA+CGG | - | chr4_3:56054065-56054084 | Msa0649410:intron | 35.0% | |
TACATAGATGGCTTCTTTAC+AGG | - | chr4_3:56054102-56054121 | Msa0649410:intron | 35.0% | |
TAGTTCTCATTCCAATGATG+CGG | + | chr4_3:56054138-56054157 | None:intergenic | 35.0% | |
AACTACACTACGAGAGAATT+TGG | - | chr4_3:56054153-56054172 | Msa0649410:intron | 35.0% | |
ACGAGAGAATTTGGAAAATC+TGG | - | chr4_3:56054162-56054181 | Msa0649410:intron | 35.0% | |
CGAGAGAATTTGGAAAATCT+GGG | - | chr4_3:56054163-56054182 | Msa0649410:intron | 35.0% | |
GAGAGAATTTGGAAAATCTG+GGG | - | chr4_3:56054164-56054183 | Msa0649410:intron | 35.0% | |
! | TGATTGGTTATGTGATTCCA+TGG | + | chr4_3:56054199-56054218 | None:intergenic | 35.0% |
ATGGAATCACATAACCAATC+AGG | - | chr4_3:56054198-56054217 | Msa0649410:intron | 35.0% | |
!!! | CCCCTTCTCTCTTATTTTTA+TGG | - | chr4_3:56054297-56054316 | Msa0649410:intron | 35.0% |
CTGTTACTATTTGTGCAGAT+TGG | - | chr4_3:56054438-56054457 | Msa0649410:CDS | 35.0% | |
ATACTATGAGTTCTTGGAGA+TGG | - | chr4_3:56054598-56054617 | Msa0649410:intron | 35.0% | |
TACTATGAGTTCTTGGAGAT+GGG | - | chr4_3:56054599-56054618 | Msa0649410:intron | 35.0% | |
CGTTCCAAAGGACAAAAATT+TGG | + | chr4_3:56054761-56054780 | None:intergenic | 35.0% | |
CTCCAATAATTCTACTTCTG+AGG | + | chr4_3:56054791-56054810 | None:intergenic | 35.0% | |
CTCAGAAGTAGAATTATTGG+AGG | - | chr4_3:56054789-56054808 | Msa0649410:intron | 35.0% | |
GCAAATGAAACAAAGGGAAA+AGG | + | chr4_3:56054853-56054872 | None:intergenic | 35.0% | |
CGAATCGCAAATGAAACAAA+GGG | + | chr4_3:56054859-56054878 | None:intergenic | 35.0% | |
TCGAATCGCAAATGAAACAA+AGG | + | chr4_3:56054860-56054879 | None:intergenic | 35.0% | |
AGACTAATGATTAATGAGGG+CGG | - | chr4_3:56055055-56055074 | Msa0649410:five_prime_UTR | 35.0% | |
TCAACGGACAATTTCTCAAC+CGG | - | chr4_3:56049980-56049999 | Msa0649410:three_prime_UTR | 40.0% | |
! | AGTTACCGAAGCTTTTCTTG+CGG | - | chr4_3:56050080-56050099 | Msa0649410:three_prime_UTR | 40.0% |
! | AGAACAGTGTTGCTCTGTTA+TGG | + | chr4_3:56050253-56050272 | None:intergenic | 40.0% |
ATTATAACAGGGCGCATATC+GGG | - | chr4_3:56050426-56050445 | Msa0649410:CDS | 40.0% | |
CTAACACATTCAAGAACCAC+AGG | + | chr4_3:56050466-56050485 | None:intergenic | 40.0% | |
AATGTGTTAGAGAAGCAGAG+AGG | - | chr4_3:56050476-56050495 | Msa0649410:intron | 40.0% | |
GTTAACTTAACGCCACATGT+TGG | + | chr4_3:56051028-56051047 | None:intergenic | 40.0% | |
AAAAAAGCAAACTCAGCTGG+TGG | + | chr4_3:56051143-56051162 | None:intergenic | 40.0% | |
!!! | ACCAGCTGAGTTTGCTTTTT+TGG | - | chr4_3:56051142-56051161 | Msa0649410:intron | 40.0% |
ACCAAAAAAGCAAACTCAGC+TGG | + | chr4_3:56051146-56051165 | None:intergenic | 40.0% | |
AGAACACTGCAACAACAAGT+AGG | + | chr4_3:56051189-56051208 | None:intergenic | 40.0% | |
AAATTACACCACACAGAGCA+AGG | + | chr4_3:56051238-56051257 | None:intergenic | 40.0% | |
!!! | TAGGTGTTTTGGGATGATGT+AGG | - | chr4_3:56051269-56051288 | Msa0649410:intron | 40.0% |
!!! | AGGTGTTTTGGGATGATGTA+GGG | - | chr4_3:56051270-56051289 | Msa0649410:intron | 40.0% |
TTGTAGAATGTGGGACTTGT+TGG | - | chr4_3:56051444-56051463 | Msa0649410:CDS | 40.0% | |
! | GAGAAGAAAACTGGTCTGTT+TGG | - | chr4_3:56051584-56051603 | Msa0649410:intron | 40.0% |
TGCGGCACATATTTAATGCT+CGG | - | chr4_3:56051831-56051850 | Msa0649410:CDS | 40.0% | |
ACCGTTTCAAATGTTTGAGC+AGG | - | chr4_3:56052063-56052082 | Msa0649410:CDS | 40.0% | |
CCCTGCTCAAACATTTGAAA+CGG | + | chr4_3:56052067-56052086 | None:intergenic | 40.0% | |
CCGTTTCAAATGTTTGAGCA+GGG | - | chr4_3:56052064-56052083 | Msa0649410:CDS | 40.0% | |
ATATGTATGCTTCCACCCAT+GGG | + | chr4_3:56052098-56052117 | None:intergenic | 40.0% | |
TAAACGAATAGCTGCAGTTC+AGG | - | chr4_3:56052172-56052191 | Msa0649410:intron | 40.0% | |
!! | ATTGAATACTGACTTGGACC+AGG | + | chr4_3:56052285-56052304 | None:intergenic | 40.0% |
CATCTCTCCAAATGTTATGG+TGG | + | chr4_3:56052435-56052454 | None:intergenic | 40.0% | |
CAGCATCTCTCCAAATGTTA+TGG | + | chr4_3:56052438-56052457 | None:intergenic | 40.0% | |
CATAACATTTGGAGAGATGC+TGG | - | chr4_3:56052436-56052455 | Msa0649410:CDS | 40.0% | |
! | GTTGGATTTTTCTGGACTGA+TGG | - | chr4_3:56052504-56052523 | Msa0649410:intron | 40.0% |
! | TGGACTGATGGATGACATTA+AGG | - | chr4_3:56052516-56052535 | Msa0649410:intron | 40.0% |
TCTCTCCATTGTTCTTCTGA+AGG | + | chr4_3:56052846-56052865 | None:intergenic | 40.0% | |
GGTATGCCATGTCAAACAAA+GGG | + | chr4_3:56052993-56053012 | None:intergenic | 40.0% | |
TGGTATGCCATGTCAAACAA+AGG | + | chr4_3:56052994-56053013 | None:intergenic | 40.0% | |
TTGTTTGACATGGCATACCA+AGG | - | chr4_3:56052994-56053013 | Msa0649410:intron | 40.0% | |
GATTTCCACTAGCAAAACCT+TGG | + | chr4_3:56053014-56053033 | None:intergenic | 40.0% | |
! | TATTAGGCCAAAGAGTTGGT+TGG | - | chr4_3:56053175-56053194 | Msa0649410:intron | 40.0% |
AGTAGTTCCAACCAACTCTT+TGG | + | chr4_3:56053185-56053204 | None:intergenic | 40.0% | |
!! | TTTAGTTTGAAGCCTTGAGC+TGG | - | chr4_3:56053338-56053357 | Msa0649410:intron | 40.0% |
AAGTTCTGTAAACCAGCTCA+AGG | + | chr4_3:56053353-56053372 | None:intergenic | 40.0% | |
! | TGAGCTGGTTTACAGAACTT+TGG | - | chr4_3:56053353-56053372 | Msa0649410:intron | 40.0% |
! | TTTTCGCAAAGTAAGCTGCA+AGG | + | chr4_3:56053430-56053449 | None:intergenic | 40.0% |
ATCCAGACTTGAAGAAGTTG+TGG | - | chr4_3:56053557-56053576 | Msa0649410:intron | 40.0% | |
GTTGTGGCTTAAAGAAGTCA+AGG | - | chr4_3:56053573-56053592 | Msa0649410:intron | 40.0% | |
AAAAAAGCAAAGGCTGTGAG+AGG | + | chr4_3:56053657-56053676 | None:intergenic | 40.0% | |
ATCATTAGTGACTGAGGCTA+TGG | - | chr4_3:56053776-56053795 | Msa0649410:intron | 40.0% | |
TGAGGTCAAAAAGTAAGCCT+AGG | + | chr4_3:56053862-56053881 | None:intergenic | 40.0% | |
GATGGCTTCTTTACAGGTTA+TGG | - | chr4_3:56054108-56054127 | Msa0649410:intron | 40.0% | |
GTTATGTGATTCCATGGCAA+TGG | + | chr4_3:56054193-56054212 | None:intergenic | 40.0% | |
TGCATTCAACTGAACCTGAT+TGG | + | chr4_3:56054215-56054234 | None:intergenic | 40.0% | |
GTGCTTATTGTAGTTGCTTG+AGG | - | chr4_3:56054265-56054284 | Msa0649410:intron | 40.0% | |
TACTTGGAGACCAAGTATCT+TGG | - | chr4_3:56054321-56054340 | Msa0649410:intron | 40.0% | |
TGACTCGTAATGGTCGTATA+AGG | - | chr4_3:56054529-56054548 | Msa0649410:intron | 40.0% | |
TGTTATCATGACAGTATGGC+TGG | - | chr4_3:56054650-56054669 | Msa0649410:intron | 40.0% | |
!! | CAGTATGGCTGGTCTTAATA+CGG | - | chr4_3:56054661-56054680 | Msa0649410:intron | 40.0% |
!! | AGTATGGCTGGTCTTAATAC+GGG | - | chr4_3:56054662-56054681 | Msa0649410:intron | 40.0% |
! | TGAGGTATTTGTCGTTCCAA+AGG | + | chr4_3:56054773-56054792 | None:intergenic | 40.0% |
GAGGGAGCTGAATAAAAGTT+GGG | - | chr4_3:56054808-56054827 | Msa0649410:CDS | 40.0% | |
GCGATTCGCAATCTTCTCAA+CGG | - | chr4_3:56049964-56049983 | Msa0649410:three_prime_UTR | 45.0% | |
! | CGAAGACATGAATCTAGCTC+CGG | + | chr4_3:56050016-56050035 | None:intergenic | 45.0% |
GAGCTAGATTCATGTCTTCG+TGG | - | chr4_3:56050016-56050035 | Msa0649410:three_prime_UTR | 45.0% | |
GATTCATGTCTTCGTGGTTC+AGG | - | chr4_3:56050022-56050041 | Msa0649410:three_prime_UTR | 45.0% | |
CTGATCCGCAAGAAAAGCTT+CGG | + | chr4_3:56050088-56050107 | None:intergenic | 45.0% | |
TCATGATTCCTTGCTCTGTG+TGG | - | chr4_3:56051227-56051246 | Msa0649410:intron | 45.0% | |
CAAGGTAGGTCTGAATCTGA+TGG | + | chr4_3:56051952-56051971 | None:intergenic | 45.0% | |
CATCAGATTCAGACCTACCT+TGG | - | chr4_3:56051950-56051969 | Msa0649410:intron | 45.0% | |
!! | AGAAGCTTGTTGACCAAGGT+AGG | + | chr4_3:56051966-56051985 | None:intergenic | 45.0% |
CATATGTATGCTTCCACCCA+TGG | + | chr4_3:56052099-56052118 | None:intergenic | 45.0% | |
! | CATGGGTGGAAGCATACATA+TGG | - | chr4_3:56052097-56052116 | Msa0649410:CDS | 45.0% |
GGTTCAAGAATCACTGAAGC+TGG | - | chr4_3:56052118-56052137 | Msa0649410:CDS | 45.0% | |
GAATCACTGAAGCTGGCATA+TGG | - | chr4_3:56052125-56052144 | Msa0649410:CDS | 45.0% | |
! | CTGCAGTTCAGGCTTTATCT+GGG | - | chr4_3:56052183-56052202 | Msa0649410:intron | 45.0% |
TCTATATACCAGTTCCCACC+TGG | - | chr4_3:56052264-56052283 | Msa0649410:intron | 45.0% | |
!! | AATACTGACTTGGACCAGGT+GGG | + | chr4_3:56052281-56052300 | None:intergenic | 45.0% |
TCACCCTGAATCTAAAGGGT+TGG | - | chr4_3:56052486-56052505 | Msa0649410:intron | 45.0% | |
! | ATTGTAACCTCTAGGGACGA+AGG | - | chr4_3:56052650-56052669 | Msa0649410:CDS | 45.0% |
AGGTCAAATCCCGTCAAAGA+CGG | - | chr4_3:56052670-56052689 | Msa0649410:CDS | 45.0% | |
AGCAGAAAGAAAGAACCGTC+TGG | + | chr4_3:56052789-56052808 | None:intergenic | 45.0% | |
TCTGAAGGATCTACTCCAGT+AGG | + | chr4_3:56052831-56052850 | None:intergenic | 45.0% | |
! | GCATACCAAGGTTTTGCTAG+TGG | - | chr4_3:56053006-56053025 | Msa0649410:intron | 45.0% |
CGAAAATGAGAAACAAGCCG+TGG | - | chr4_3:56053444-56053463 | Msa0649410:intron | 45.0% | |
!! | AGAGGTGGATTGCTGTACAT+GGG | + | chr4_3:56053502-56053521 | None:intergenic | 45.0% |
!! | AAGAGGTGGATTGCTGTACA+TGG | + | chr4_3:56053503-56053522 | None:intergenic | 45.0% |
TACAGCAATCCACCTCTTCA+TGG | - | chr4_3:56053505-56053524 | Msa0649410:intron | 45.0% | |
! | CTTGTCGTTTCAACTGTCCT+TGG | - | chr4_3:56053532-56053551 | Msa0649410:intron | 45.0% |
TCTTCAAGTCTGGATCACCA+AGG | + | chr4_3:56053552-56053571 | None:intergenic | 45.0% | |
AGCCACAACTTCTTCAAGTC+TGG | + | chr4_3:56053562-56053581 | None:intergenic | 45.0% | |
TGGAGACCAAGTATCTTGGT+AGG | - | chr4_3:56054325-56054344 | Msa0649410:intron | 45.0% | |
GGAGACCAAGTATCTTGGTA+GGG | - | chr4_3:56054326-56054345 | Msa0649410:intron | 45.0% | |
GAGACCAAGTATCTTGGTAG+GGG | - | chr4_3:56054327-56054346 | Msa0649410:intron | 45.0% | |
AAGTATCTTGGTAGGGGAGA+GGG | - | chr4_3:56054333-56054352 | Msa0649410:intron | 45.0% | |
ATTGGCATGTTCTGCTACAG+CGG | - | chr4_3:56054456-56054475 | Msa0649410:CDS | 45.0% | |
GTCAAACGATCAACCTGTTC+TGG | + | chr4_3:56054489-56054508 | None:intergenic | 45.0% | |
GGAGGGAGCTGAATAAAAGT+TGG | - | chr4_3:56054807-56054826 | Msa0649410:CDS | 45.0% | |
GAGAAGATTGCGAATCGCCA+TGG | + | chr4_3:56049962-56049981 | None:intergenic | 50.0% | |
! | CATGAATCTAGCTCCGGTGA+CGG | + | chr4_3:56050010-56050029 | None:intergenic | 50.0% |
GAACATCGAACCAGCTCCTA+AGG | - | chr4_3:56050044-56050063 | Msa0649410:three_prime_UTR | 50.0% | |
AGGATTGGATCCTTAGGAGC+TGG | + | chr4_3:56050057-56050076 | None:intergenic | 50.0% | |
GCTCCTAAGGATCCAATCCT+CGG | - | chr4_3:56050057-56050076 | Msa0649410:three_prime_UTR | 50.0% | |
ACTCCGAGGATTGGATCCTT+AGG | + | chr4_3:56050063-56050082 | None:intergenic | 50.0% | |
GAAAAGCTTCGGTAACTCCG+AGG | + | chr4_3:56050077-56050096 | None:intergenic | 50.0% | |
GGATGACAATGGAAAGCCTG+TGG | - | chr4_3:56050447-56050466 | Msa0649410:CDS | 50.0% | |
GAAGCAGAGAGGAGAATTGC+AGG | - | chr4_3:56050487-56050506 | Msa0649410:intron | 50.0% | |
!! | AGCAGGGAGTATCTTCCCAT+GGG | - | chr4_3:56052080-56052099 | Msa0649410:CDS | 50.0% |
! | GCTGCAGTTCAGGCTTTATC+TGG | - | chr4_3:56052182-56052201 | Msa0649410:intron | 50.0% |
! | GTTCAGGCTTTATCTGGGAC+TGG | - | chr4_3:56052188-56052207 | Msa0649410:intron | 50.0% |
!! | GAATACTGACTTGGACCAGG+TGG | + | chr4_3:56052282-56052301 | None:intergenic | 50.0% |
GATTTGACCTTCGTCCCTAG+AGG | + | chr4_3:56052660-56052679 | None:intergenic | 50.0% | |
! | CTTACACAGAGTGCTCCAGA+CGG | - | chr4_3:56052771-56052790 | Msa0649410:CDS | 50.0% |
GCTTGTGCTCACAATCCTAC+TGG | - | chr4_3:56052813-56052832 | Msa0649410:CDS | 50.0% | |
! | ACCTAAGGCATCCAACTCTC+TGG | + | chr4_3:56053131-56053150 | None:intergenic | 50.0% |
TGGATTGCTGTACATGGGTC+TGG | + | chr4_3:56053497-56053516 | None:intergenic | 50.0% | |
ACAAGTGCTCCATGAAGAGG+TGG | + | chr4_3:56053517-56053536 | None:intergenic | 50.0% | |
ACGACAAGTGCTCCATGAAG+AGG | + | chr4_3:56053520-56053539 | None:intergenic | 50.0% | |
AAGCAAAGGCTGTGAGAGGT+GGG | + | chr4_3:56053653-56053672 | None:intergenic | 50.0% | |
AAAGCAAAGGCTGTGAGAGG+TGG | + | chr4_3:56053654-56053673 | None:intergenic | 50.0% | |
GTTATGGCAGACCGCATCAT+TGG | - | chr4_3:56054124-56054143 | Msa0649410:intron | 50.0% | |
CTCTCCCCTACCAAGATACT+TGG | + | chr4_3:56054334-56054353 | None:intergenic | 50.0% | |
CAAGTATCTTGGTAGGGGAG+AGG | - | chr4_3:56054332-56054351 | Msa0649410:intron | 50.0% | |
TTGGCATGTTCTGCTACAGC+GGG | - | chr4_3:56054457-56054476 | Msa0649410:CDS | 50.0% | |
GGTCTTAATACGGGCAACGT+TGG | - | chr4_3:56054671-56054690 | Msa0649410:intron | 50.0% | |
TACGGGCAACGTTGGATATG+TGG | - | chr4_3:56054679-56054698 | Msa0649410:intron | 50.0% | |
TGTGGCTAACGCTATCAACG+AGG | - | chr4_3:56054697-56054716 | Msa0649410:intron | 50.0% | |
GCGAATCGCCATGGAAACAG+AGG | + | chr4_3:56049953-56049972 | None:intergenic | 55.0% | |
GCTTCGGTAACTCCGAGGAT+TGG | + | chr4_3:56050072-56050091 | None:intergenic | 55.0% | |
GGCGCATATCGGGATGACAA+TGG | - | chr4_3:56050436-56050455 | Msa0649410:CDS | 55.0% | |
!! | GAGCAGGGAGTATCTTCCCA+TGG | - | chr4_3:56052079-56052098 | Msa0649410:CDS | 55.0% |
!! | AGGGAGTATCTTCCCATGGG+TGG | - | chr4_3:56052083-56052102 | Msa0649410:CDS | 55.0% |
GGACTGTATGGCCAGAGAGT+TGG | - | chr4_3:56053117-56053136 | Msa0649410:intron | 55.0% | |
GCCAGAGAGTTGGATGCCTT+AGG | - | chr4_3:56053127-56053146 | Msa0649410:intron | 55.0% | |
AGCAAAGGCTGTGAGAGGTG+GGG | + | chr4_3:56053652-56053671 | None:intergenic | 55.0% | |
! | ATCTGGGGTCTCCATTGCCA+TGG | - | chr4_3:56054179-56054198 | Msa0649410:intron | 55.0% |
GACTTGGACCAGGTGGGAAC+TGG | + | chr4_3:56052275-56052294 | None:intergenic | 60.0% | |
CAGCGGGATGACACCAGAAC+AGG | - | chr4_3:56054473-56054492 | Msa0649410:CDS | 60.0% | |
CTCAACCGGAGCTCCGTCAC+CGG | - | chr4_3:56049994-56050013 | Msa0649410:three_prime_UTR | 65.0% | |
!! | TAGCTCCGGTGACGGAGCTC+CGG | + | chr4_3:56050002-56050021 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 56049835 | 56055099 | 56049835 | ID=Msa0649410;Name=Msa0649410 |
chr4_3 | mRNA | 56049835 | 56055099 | 56049835 | ID=Msa0649410-mRNA-1;Parent=Msa0649410;Name=Msa0649410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=126|1|1|1|1|1|10|363|424 |
chr4_3 | exon | 56049835 | 56050270 | 56049835 | ID=Msa0649410-mRNA-1:exon:14508;Parent=Msa0649410-mRNA-1 |
chr4_3 | exon | 56050384 | 56050478 | 56050384 | ID=Msa0649410-mRNA-1:exon:14507;Parent=Msa0649410-mRNA-1 |
chr4_3 | exon | 56050715 | 56050810 | 56050715 | ID=Msa0649410-mRNA-1:exon:14506;Parent=Msa0649410-mRNA-1 |
chr4_3 | exon | 56051340 | 56051499 | 56051340 | ID=Msa0649410-mRNA-1:exon:14505;Parent=Msa0649410-mRNA-1 |
chr4_3 | exon | 56051786 | 56051958 | 56051786 | ID=Msa0649410-mRNA-1:exon:14504;Parent=Msa0649410-mRNA-1 |
chr4_3 | exon | 56052050 | 56052154 | 56052050 | ID=Msa0649410-mRNA-1:exon:14503;Parent=Msa0649410-mRNA-1 |
chr4_3 | exon | 56052397 | 56052502 | 56052397 | ID=Msa0649410-mRNA-1:exon:14502;Parent=Msa0649410-mRNA-1 |
chr4_3 | exon | 56052643 | 56052849 | 56052643 | ID=Msa0649410-mRNA-1:exon:14501;Parent=Msa0649410-mRNA-1 |
chr4_3 | exon | 56054413 | 56054498 | 56054413 | ID=Msa0649410-mRNA-1:exon:14500;Parent=Msa0649410-mRNA-1 |
chr4_3 | exon | 56054800 | 56055099 | 56054800 | ID=Msa0649410-mRNA-1:exon:14499;Parent=Msa0649410-mRNA-1 |
chr4_3 | five_prime_UTR | 56054974 | 56055099 | 56054974 | ID=Msa0649410-mRNA-1:five_prime_utr;Parent=Msa0649410-mRNA-1 |
chr4_3 | CDS | 56054800 | 56054973 | 56054800 | ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1 |
chr4_3 | CDS | 56054413 | 56054498 | 56054413 | ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1 |
chr4_3 | CDS | 56052643 | 56052849 | 56052643 | ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1 |
chr4_3 | CDS | 56052397 | 56052502 | 56052397 | ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1 |
chr4_3 | CDS | 56052050 | 56052154 | 56052050 | ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1 |
chr4_3 | CDS | 56051786 | 56051958 | 56051786 | ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1 |
chr4_3 | CDS | 56051340 | 56051499 | 56051340 | ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1 |
chr4_3 | CDS | 56050715 | 56050810 | 56050715 | ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1 |
chr4_3 | CDS | 56050384 | 56050478 | 56050384 | ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1 |
chr4_3 | CDS | 56050198 | 56050270 | 56050198 | ID=Msa0649410-mRNA-1:cds;Parent=Msa0649410-mRNA-1 |
chr4_3 | three_prime_UTR | 56049835 | 56050197 | 56049835 | ID=Msa0649410-mRNA-1:three_prime_utr;Parent=Msa0649410-mRNA-1 |
Gene Sequence |
Protein sequence |