Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649450 | XP_024638558.1 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 877 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649450 | sp|P46643|AAT1_ARATH | 78.873 | 426 | 88 | 1 | 1 | 424 | 5 | 430 | 0.0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649450 | G7JCN3 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 877 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072170 | Msa0649450 | 0.825713 | 4.035276e-54 | -8.615850e-47 |
| Msa0120540 | Msa0649450 | 0.828015 | 1.136998e-54 | -8.615850e-47 |
| Msa0608910 | Msa0649450 | 0.932006 | 1.625858e-94 | -8.615850e-47 |
| Msa0649410 | Msa0649450 | 0.985470 | 1.151473e-163 | -8.615850e-47 |
| Msa0649450 | Msa0663510 | 0.805425 | 1.343107e-49 | -8.615850e-47 |
| Msa0649450 | Msa1010460 | 0.810302 | 1.233333e-50 | -8.615850e-47 |
| Msa0649450 | Msa1172130 | -0.820962 | 5.198393e-53 | -8.615850e-47 |
| Msa0649450 | Msa1272520 | 0.810211 | 1.290381e-50 | -8.615850e-47 |
| Msa0649450 | Msa1310660 | 0.800675 | 1.289741e-48 | -8.615850e-47 |
| Msa0649450 | Msa1363700 | 0.806855 | 6.717330e-50 | -8.615850e-47 |
| Msa0649450 | Msa1393800 | 0.811845 | 5.711094e-51 | -8.615850e-47 |
| Msa0649450 | Msa1438450 | 0.813033 | 3.141052e-51 | -8.615850e-47 |
| Msa0145150 | Msa0649450 | 0.819002 | 1.459544e-52 | -8.615850e-47 |
| Msa0194720 | Msa0649450 | 0.822219 | 2.663231e-53 | -8.615850e-47 |
| Msa0252240 | Msa0649450 | 0.811610 | 6.422929e-51 | -8.615850e-47 |
| Msa0265160 | Msa0649450 | 0.821234 | 4.499843e-53 | -8.615850e-47 |
| Msa0291020 | Msa0649450 | 0.802374 | 5.784194e-49 | -8.615850e-47 |
| Msa0296350 | Msa0649450 | 0.803954 | 2.723895e-49 | -8.615850e-47 |
| Msa0555400 | Msa0649450 | 0.873826 | 1.087801e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649450 | MtrunA17_Chr4g0041371 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 877 |
| Msa0649450 | MtrunA17_Chr4g0041351 | 92.437 | 238 | 18 | 0 | 187 | 424 | 1 | 238 | 4.06e-168 | 471 |
| Msa0649450 | MtrunA17_Chr3g0139821 | 51.378 | 399 | 192 | 1 | 25 | 421 | 56 | 454 | 4.94e-147 | 426 |
| Msa0649450 | MtrunA17_Chr1g0149721 | 48.354 | 395 | 202 | 2 | 25 | 417 | 63 | 457 | 7.58e-136 | 397 |
| Msa0649450 | MtrunA17_Chr4g0041361 | 85.987 | 157 | 16 | 2 | 1 | 156 | 1 | 152 | 3.50e-92 | 275 |
| Msa0649450 | MtrunA17_Chr4g0005811 | 54.167 | 48 | 22 | 0 | 296 | 343 | 24 | 71 | 4.04e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649450 | AT2G30970.1 | 78.873 | 426 | 88 | 1 | 1 | 424 | 5 | 430 | 0.0 | 720 |
| Msa0649450 | AT2G30970.2 | 78.873 | 426 | 88 | 1 | 1 | 424 | 5 | 430 | 0.0 | 720 |
| Msa0649450 | AT5G19550.1 | 50.503 | 398 | 195 | 1 | 23 | 418 | 1 | 398 | 2.55e-147 | 425 |
| Msa0649450 | AT5G11520.1 | 51.741 | 402 | 192 | 1 | 25 | 424 | 47 | 448 | 3.30e-147 | 426 |
| Msa0649450 | AT1G62800.1 | 47.619 | 399 | 209 | 0 | 23 | 421 | 1 | 399 | 8.02e-138 | 400 |
| Msa0649450 | AT1G62800.2 | 47.382 | 401 | 209 | 1 | 23 | 421 | 1 | 401 | 2.77e-136 | 397 |
| Msa0649450 | AT4G31990.1 | 46.135 | 414 | 220 | 3 | 6 | 417 | 33 | 445 | 7.76e-134 | 392 |
| Msa0649450 | AT4G31990.2 | 46.135 | 414 | 220 | 3 | 6 | 417 | 33 | 445 | 7.76e-134 | 392 |
| Msa0649450 | AT4G31990.3 | 46.135 | 414 | 220 | 3 | 6 | 417 | 33 | 445 | 1.77e-133 | 392 |
| Msa0649450 | AT4G31990.4 | 47.342 | 395 | 206 | 2 | 25 | 417 | 46 | 440 | 2.86e-133 | 390 |
| Msa0649450 | AT1G62800.3 | 47.493 | 339 | 176 | 1 | 23 | 359 | 1 | 339 | 2.10e-112 | 333 |
Find 133 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATGATGGTCATTTATT+AGG | 0.163800 | 4_3:-56089719 | Msa0649450:CDS |
| GCTGCAGTTCAGGCTTTATC+TGG | 0.203926 | 4_3:-56090603 | Msa0649450:CDS |
| AACTACACTACGAGAGAATT+TGG | 0.231543 | 4_3:-56088632 | Msa0649450:CDS |
| ACTCCAACATTAACTTTGTT+TGG | 0.243943 | 4_3:+56092674 | None:intergenic |
| GTTGCATAATTGAATAATTT+AGG | 0.248563 | 4_3:+56088053 | None:intergenic |
| TACCTCAGAAGTAGAATTAT+TGG | 0.248615 | 4_3:-56087999 | Msa0649450:three_prime_UTR |
| TACAGTTACAAAGTTAGATT+TGG | 0.270790 | 4_3:-56092902 | Msa0649450:five_prime_UTR |
| AAATCCAACCCTTTAGATTC+AGG | 0.281836 | 4_3:+56090295 | None:intergenic |
| TGGGAACTGGTATATAGATT+TGG | 0.284181 | 4_3:+56090526 | None:intergenic |
| TGGACTGATGGATGACATTA+AGG | 0.291323 | 4_3:-56090269 | Msa0649450:intron |
| AAAACTTGACTCACATGAAT+TGG | 0.295790 | 4_3:+56092272 | None:intergenic |
| ACGAGAGAATTTGGAAAATC+TGG | 0.306043 | 4_3:-56088623 | Msa0649450:CDS |
| GATTCATGTCTTCGTGGTTC+AGG | 0.309930 | 4_3:-56092763 | Msa0649450:CDS |
| TGAGAAGTAGATTGAATAAG+AGG | 0.318062 | 4_3:-56087891 | Msa0649450:three_prime_UTR |
| TAGTAACGGTATGTCTTTAT+TGG | 0.320777 | 4_3:+56090322 | None:intergenic |
| AGCCACAACTTCTTCAAGTC+TGG | 0.343190 | 4_3:+56089226 | None:intergenic |
| TACAGCAATCCACCTCTTCA+TGG | 0.366324 | 4_3:-56089280 | Msa0649450:CDS |
| GAAGCAGAGAGGAGAATTGC+AGG | 0.369047 | 4_3:-56092298 | Msa0649450:CDS |
| TTAGTCTCAATCAACTTATA+AGG | 0.370879 | 4_3:+56087746 | None:intergenic |
| GTCAAACGATCAACCTGTTC+TGG | 0.382951 | 4_3:+56088299 | None:intergenic |
| AATTATAACAGGGCGCATAT+CGG | 0.387711 | 4_3:-56092360 | Msa0649450:intron |
| TGACTCGTAATGGTCGTATA+AGG | 0.390208 | 4_3:-56088256 | Msa0649450:intron |
| ATTACAGCCACCATAACATT+TGG | 0.393881 | 4_3:-56090360 | Msa0649450:intron |
| GGGAACTGGTATATAGATTT+GGG | 0.398341 | 4_3:+56090527 | None:intergenic |
| TAAACGAATAGCTGCAGTTC+AGG | 0.408353 | 4_3:-56090613 | Msa0649450:CDS |
| TCAACGGACAATTTCTCAAC+CGG | 0.420413 | 4_3:-56092805 | Msa0649450:CDS |
| CATATTTACATGACTCGTAA+TGG | 0.427237 | 4_3:-56088266 | Msa0649450:CDS |
| CAGCATCTCTCCAAATGTTA+TGG | 0.427253 | 4_3:+56090350 | None:intergenic |
| GACTTGGACCAGGTGGGAAC+TGG | 0.436048 | 4_3:+56090513 | None:intergenic |
| CTTGTCGTTTCAACTGTCCT+TGG | 0.436753 | 4_3:-56089253 | Msa0649450:CDS |
| CAGTATGGCTGGTCTTAATA+CGG | 0.443084 | 4_3:-56088124 | Msa0649450:CDS |
| GAATCACTGAAGCTGGCATA+TGG | 0.444094 | 4_3:-56090660 | Msa0649450:CDS |
| ATTATAACAGGGCGCATATC+GGG | 0.453076 | 4_3:-56092359 | Msa0649450:intron |
| CGAGAGAATTTGGAAAATCT+GGG | 0.454321 | 4_3:-56088622 | Msa0649450:CDS |
| GTTATGGCAGACCGCATCAT+TGG | 0.454392 | 4_3:-56088661 | Msa0649450:CDS |
| TGGTATATAGATTTGGGTGT+TGG | 0.456286 | 4_3:+56090533 | None:intergenic |
| TATGATTGTTTGCAGGCTAA+AGG | 0.462192 | 4_3:-56089824 | Msa0649450:intron |
| TGGATTGCTGTACATGGGTC+TGG | 0.465606 | 4_3:+56089291 | None:intergenic |
| TGCATTCAACTGAACCTGAT+TGG | 0.467234 | 4_3:+56088573 | None:intergenic |
| GCTTGTGCTCACAATCCTAC+TGG | 0.469061 | 4_3:-56089972 | Msa0649450:CDS |
| AATCCAACCCTTTAGATTCA+GGG | 0.470231 | 4_3:+56090296 | None:intergenic |
| TTTCATTTCCTCTGTTTCCA+TGG | 0.471629 | 4_3:-56092843 | Msa0649450:exon |
| TCTCTCCATTGTTCTTCTGA+AGG | 0.474653 | 4_3:+56089942 | None:intergenic |
| CAGCGGGATGACACCAGAAC+AGG | 0.474884 | 4_3:-56088312 | Msa0649450:CDS |
| GTTCAGGCTTTATCTGGGAC+TGG | 0.478849 | 4_3:-56090597 | Msa0649450:CDS |
| TACTATCACCCTGAATCTAA+AGG | 0.480649 | 4_3:-56090304 | Msa0649450:CDS |
| GGAGGGAGCTGAATAAAAGT+TGG | 0.480734 | 4_3:-56087978 | Msa0649450:three_prime_UTR |
| ACTATCACCCTGAATCTAAA+GGG | 0.481415 | 4_3:-56090303 | Msa0649450:CDS |
| GGTATATAGATTTGGGTGTT+GGG | 0.481546 | 4_3:+56090534 | None:intergenic |
| ACTCCGAGGATTGGATCCTT+AGG | 0.493438 | 4_3:+56092725 | None:intergenic |
| ATGGAATCACATAACCAATC+AGG | 0.493504 | 4_3:-56088587 | Msa0649450:intron |
| TAGCTCCGGTGACGGAGCTC+CGG | 0.500615 | 4_3:+56092786 | None:intergenic |
| GCAAATGAAACAAAGGGAAA+AGG | 0.502975 | 4_3:+56087935 | None:intergenic |
| GCTTCGGTAACTCCGAGGAT+TGG | 0.504812 | 4_3:+56092716 | None:intergenic |
| GAGCAGGGAGTATCTTCCCA+TGG | 0.505060 | 4_3:-56090706 | Msa0649450:intron |
| CTGATCCGCAAGAAAAGCTT+CGG | 0.505274 | 4_3:+56092700 | None:intergenic |
| ATTGAGACTAATGATTAATG+AGG | 0.509902 | 4_3:-56087734 | Msa0649450:three_prime_UTR |
| ACCTAAGGCATCCAACTCTC+TGG | 0.511639 | 4_3:+56089657 | None:intergenic |
| GAACATCGAACCAGCTCCTA+AGG | 0.511927 | 4_3:-56092741 | Msa0649450:CDS |
| CTGCAGTTCAGGCTTTATCT+GGG | 0.514039 | 4_3:-56090602 | Msa0649450:CDS |
| CATGGGTGGAAGCATACATA+TGG | 0.514364 | 4_3:-56090688 | Msa0649450:CDS |
| TGTTATCATGACAGTATGGC+TGG | 0.514770 | 4_3:-56088135 | Msa0649450:intron |
| CTCAACCGGAGCTCCGTCAC+CGG | 0.515163 | 4_3:-56092791 | Msa0649450:CDS |
| CATAACATTTGGAGAGATGC+TGG | 0.515488 | 4_3:-56090349 | Msa0649450:CDS |
| TACGGGCAACGTTGGATATG+TGG | 0.515504 | 4_3:-56088106 | Msa0649450:CDS |
| CATATGTATGCTTCCACCCA+TGG | 0.520422 | 4_3:+56090689 | None:intergenic |
| AGGATTGGATCCTTAGGAGC+TGG | 0.523663 | 4_3:+56092731 | None:intergenic |
| TCATTTCCCTTTGTTTGACA+TGG | 0.525399 | 4_3:-56089801 | Msa0649450:CDS |
| GGTTCAAGAATCACTGAAGC+TGG | 0.525800 | 4_3:-56090667 | Msa0649450:CDS |
| ATAGAGATGTAAAAGCCATC+AGG | 0.526430 | 4_3:-56089748 | Msa0649450:CDS |
| GAGCTAGATTCATGTCTTCG+TGG | 0.529355 | 4_3:-56092769 | Msa0649450:CDS |
| AGTCCAAACAAAGTTAATGT+TGG | 0.529361 | 4_3:-56092677 | Msa0649450:CDS |
| GAGGGAGCTGAATAAAAGTT+GGG | 0.530751 | 4_3:-56087977 | Msa0649450:three_prime_UTR |
| AGCAGGGAGTATCTTCCCAT+GGG | 0.532326 | 4_3:-56090705 | Msa0649450:intron |
| AAGAGGTGGATTGCTGTACA+TGG | 0.536615 | 4_3:+56089285 | None:intergenic |
| AGCAGAAAGAAAGAACCGTC+TGG | 0.539208 | 4_3:+56089999 | None:intergenic |
| TGAGGTATTTGTCGTTCCAA+AGG | 0.545379 | 4_3:+56088015 | None:intergenic |
| ATCCAGACTTGAAGAAGTTG+TGG | 0.545968 | 4_3:-56089228 | Msa0649450:CDS |
| CGAATCGCAAATGAAACAAA+GGG | 0.547414 | 4_3:+56087929 | None:intergenic |
| TCACCCTGAATCTAAAGGGT+TGG | 0.547557 | 4_3:-56090299 | Msa0649450:CDS |
| ATCTGGGGTCTCCATTGCCA+TGG | 0.550492 | 4_3:-56088606 | Msa0649450:CDS |
| GAGAAGATTGCGAATCGCCA+TGG | 0.553263 | 4_3:+56092826 | None:intergenic |
| GGACTGTATGGCCAGAGAGT+TGG | 0.555960 | 4_3:-56089668 | Msa0649450:CDS |
| GGTATGCCATGTCAAACAAA+GGG | 0.556105 | 4_3:+56089795 | None:intergenic |
| AGAGATCTCTTCTCAAATGA+AGG | 0.556653 | 4_3:-56089922 | Msa0649450:intron |
| CTCCAATAATTCTACTTCTG+AGG | 0.561476 | 4_3:+56087997 | None:intergenic |
| TTGGCATGTTCTGCTACAGC+GGG | 0.561910 | 4_3:-56088328 | Msa0649450:CDS |
| GATTTCCACTAGCAAAACCT+TGG | 0.563864 | 4_3:+56089774 | None:intergenic |
| CTAACACATTCAAGAACCAC+AGG | 0.564027 | 4_3:+56092322 | None:intergenic |
| AGTATGGCTGGTCTTAATAC+GGG | 0.570434 | 4_3:-56088123 | Msa0649450:CDS |
| TCGAATCGCAAATGAAACAA+AGG | 0.571062 | 4_3:+56087928 | None:intergenic |
| GCCAGAGAGTTGGATGCCTT+AGG | 0.572080 | 4_3:-56089658 | Msa0649450:intron |
| TCTGAAGGATCTACTCCAGT+AGG | 0.572848 | 4_3:+56089957 | None:intergenic |
| GGTCTTAATACGGGCAACGT+TGG | 0.573230 | 4_3:-56088114 | Msa0649450:CDS |
| CTCAGAAGTAGAATTATTGG+AGG | 0.576823 | 4_3:-56087996 | Msa0649450:three_prime_UTR |
| TGGTATGCCATGTCAAACAA+AGG | 0.578691 | 4_3:+56089794 | None:intergenic |
| GTTATGTGATTCCATGGCAA+TGG | 0.584912 | 4_3:+56088595 | None:intergenic |
| TAAAACAGAATGTGTTCACT+AGG | 0.590872 | 4_3:+56092877 | None:intergenic |
| GCTCCTAAGGATCCAATCCT+CGG | 0.593427 | 4_3:-56092728 | Msa0649450:CDS |
| TAGATTCAGGGTGATAGTAA+CGG | 0.595480 | 4_3:+56090308 | None:intergenic |
| CATGAATCTAGCTCCGGTGA+CGG | 0.597404 | 4_3:+56092778 | None:intergenic |
| TCTATATACCAGTTCCCACC+TGG | 0.597915 | 4_3:-56090521 | Msa0649450:CDS |
| TTGAGACTAATGATTAATGA+GGG | 0.598034 | 4_3:-56087733 | Msa0649450:three_prime_UTR |
| CATCTCTCCAAATGTTATGG+TGG | 0.599838 | 4_3:+56090353 | None:intergenic |
| TGATTGGTTATGTGATTCCA+TGG | 0.602248 | 4_3:+56088589 | None:intergenic |
| CGAAGACATGAATCTAGCTC+CGG | 0.602634 | 4_3:+56092772 | None:intergenic |
| GTTGTGGCTTAAAGAAGTCA+AGG | 0.603954 | 4_3:-56089212 | Msa0649450:intron |
| ATTGGCATGTTCTGCTACAG+CGG | 0.606237 | 4_3:-56088329 | Msa0649450:CDS |
| TAGATCCTTCAGAAGAACAA+TGG | 0.608072 | 4_3:-56089947 | Msa0649450:CDS |
| ATATGTATGCTTCCACCCAT+GGG | 0.618917 | 4_3:+56090690 | None:intergenic |
| GGCGCATATCGGGATGACAA+TGG | 0.620903 | 4_3:-56092349 | Msa0649450:CDS |
| TTGTTTGACATGGCATACCA+AGG | 0.620915 | 4_3:-56089791 | Msa0649450:CDS |
| ACGACAAGTGCTCCATGAAG+AGG | 0.624499 | 4_3:+56089268 | None:intergenic |
| AGATGATTCTGAGTTCATCA+AGG | 0.634967 | 4_3:-56090637 | Msa0649450:CDS |
| ACAAGTGCTCCATGAAGAGG+TGG | 0.644744 | 4_3:+56089271 | None:intergenic |
| GCGAATCGCCATGGAAACAG+AGG | 0.646344 | 4_3:+56092835 | None:intergenic |
| GAATACTGACTTGGACCAGG+TGG | 0.647698 | 4_3:+56090506 | None:intergenic |
| TAGTTCTCATTCCAATGATG+CGG | 0.649874 | 4_3:+56088650 | None:intergenic |
| TCAGAAGTAGAATTATTGGA+GGG | 0.651730 | 4_3:-56087995 | Msa0649450:three_prime_UTR |
| ATTGAATACTGACTTGGACC+AGG | 0.652138 | 4_3:+56090503 | None:intergenic |
| AGGGAGTATCTTCCCATGGG+TGG | 0.652799 | 4_3:-56090702 | Msa0649450:CDS |
| AATACTGACTTGGACCAGGT+GGG | 0.664893 | 4_3:+56090507 | None:intergenic |
| GCGATTCGCAATCTTCTCAA+CGG | 0.664921 | 4_3:-56092821 | Msa0649450:CDS |
| GGATGACAATGGAAAGCCTG+TGG | 0.668054 | 4_3:-56092338 | Msa0649450:CDS |
| CGAAAATGAGAAACAAGCCG+TGG | 0.673088 | 4_3:-56089341 | Msa0649450:CDS |
| GAGAGAATTTGGAAAATCTG+GGG | 0.676096 | 4_3:-56088621 | Msa0649450:CDS |
| AGACTAATGATTAATGAGGG+CGG | 0.684129 | 4_3:-56087730 | Msa0649450:three_prime_UTR |
| CTTACACAGAGTGCTCCAGA+CGG | 0.687623 | 4_3:-56090014 | Msa0649450:intron |
| GAAAAGCTTCGGTAACTCCG+AGG | 0.698605 | 4_3:+56092711 | None:intergenic |
| AATGTGTTAGAGAAGCAGAG+AGG | 0.730380 | 4_3:-56092309 | Msa0649450:CDS |
| AGAGGTGGATTGCTGTACAT+GGG | 0.738190 | 4_3:+56089286 | None:intergenic |
| TCTTCAAGTCTGGATCACCA+AGG | 0.760746 | 4_3:+56089236 | None:intergenic |
| TGTGGCTAACGCTATCAACG+AGG | 0.769825 | 4_3:-56088088 | Msa0649450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAGTTTTTTTTTTTTTTTT+TGG | - | chr4_3:56088401-56088420 | Msa0649450:intron | 10.0% |
| !! | TTAACAAAAAAAATATTTGA+AGG | + | chr4_3:56088588-56088607 | None:intergenic | 10.0% |
| !!! | AAATAAATATTTGTTATTTG+TGG | + | chr4_3:56088804-56088823 | None:intergenic | 10.0% |
| !!! | AAATATATAATTTCTACTTT+TGG | - | chr4_3:56088871-56088890 | Msa0649450:intron | 10.0% |
| !!! | TTTTTTCAACTTTATTTAAT+GGG | - | chr4_3:56088944-56088963 | Msa0649450:intron | 10.0% |
| !!! | AAACTTTGAAATATTTTTTT+GGG | + | chr4_3:56089350-56089369 | None:intergenic | 10.0% |
| !! | AAATAAAACTTAATTTCTTA+TGG | - | chr4_3:56089781-56089800 | Msa0649450:CDS | 10.0% |
| !! | TATATTAATATAGAATAACA+TGG | + | chr4_3:56091849-56091868 | None:intergenic | 10.0% |
| !! | AATAGTTGTTGTAATAATAA+TGG | - | chr4_3:56088493-56088512 | Msa0649450:intron | 15.0% |
| !!! | GTTTTTTCAACTTTATTTAA+TGG | - | chr4_3:56088943-56088962 | Msa0649450:intron | 15.0% |
| !! | TTTCAAAGATAAATATTTGT+GGG | - | chr4_3:56089197-56089216 | Msa0649450:intron | 15.0% |
| !!! | GAAACTTTGAAATATTTTTT+TGG | + | chr4_3:56089351-56089370 | None:intergenic | 15.0% |
| !!! | TTAATATCATTTTAAAACAG+TGG | + | chr4_3:56089744-56089763 | None:intergenic | 15.0% |
| !!! | TTATACCATAAAGTTTTTTA+GGG | + | chr4_3:56091553-56091572 | None:intergenic | 15.0% |
| !!! | TTTATACCATAAAGTTTTTT+AGG | + | chr4_3:56091554-56091573 | None:intergenic | 15.0% |
| !! | TGATTTACTAAATTTAAGAA+TGG | + | chr4_3:56091897-56091916 | None:intergenic | 15.0% |
| !!! | CCAAATAATAATCATTTTTA+CGG | + | chr4_3:56092827-56092846 | None:intergenic | 15.0% |
| !!! | TTTGATTTGCAAATTATAAC+AGG | - | chr4_3:56088287-56088306 | Msa0649450:CDS | 20.0% |
| !!! | TTGATTTGCAAATTATAACA+GGG | - | chr4_3:56088288-56088307 | Msa0649450:CDS | 20.0% |
| !!! | TTAATGCTAACATTGATTTT+AGG | - | chr4_3:56088424-56088443 | Msa0649450:intron | 20.0% |
| !!! | TGTAATTTGTTTCTTTCTTT+AGG | - | chr4_3:56089123-56089142 | Msa0649450:intron | 20.0% |
| !! | GTTTCAAAGATAAATATTTG+TGG | - | chr4_3:56089196-56089215 | Msa0649450:intron | 20.0% |
| !! | TTCAAAGATAAATATTTGTG+GGG | - | chr4_3:56089198-56089217 | Msa0649450:intron | 20.0% |
| !! | CTAACCTACTAAAAATTTAA+GGG | + | chr4_3:56089256-56089275 | None:intergenic | 20.0% |
| !!! | TCTCACTTTTAGAAATATTT+TGG | + | chr4_3:56089441-56089460 | None:intergenic | 20.0% |
| !! | CTTTAATTAATCTACAAGAA+TGG | - | chr4_3:56089652-56089671 | Msa0649450:intron | 20.0% |
| !! | ATTACAAGATCAATAATTCT+AGG | + | chr4_3:56090271-56090290 | None:intergenic | 20.0% |
| !! | AATAATTAAAGTGAGACTAA+TGG | + | chr4_3:56090580-56090599 | None:intergenic | 20.0% |
| !! | TAAGAAATAACCAATTTAAG+AGG | + | chr4_3:56090628-56090647 | None:intergenic | 20.0% |
| !! | TCAATCATATGCAAAAAATA+TGG | - | chr4_3:56090968-56090987 | Msa0649450:intron | 20.0% |
| !! | CAATCATATGCAAAAAATAT+GGG | - | chr4_3:56090969-56090988 | Msa0649450:intron | 20.0% |
| !! | CTAATACTAATCAATAAGAA+TGG | + | chr4_3:56091034-56091053 | None:intergenic | 20.0% |
| !!! | CATTCTTATTGATTAGTATT+AGG | - | chr4_3:56091032-56091051 | Msa0649450:intron | 20.0% |
| !! | AATGATATGTATGTAAACAT+TGG | - | chr4_3:56091182-56091201 | Msa0649450:intron | 20.0% |
| !!! | TTTTTCCCTAAAAAACTTTA+TGG | - | chr4_3:56091545-56091564 | Msa0649450:intron | 20.0% |
| !! | ATATATAAGAAAAAAGTCTG+AGG | + | chr4_3:56091753-56091772 | None:intergenic | 20.0% |
| !! | TGTCTTCTTAAATTATCATT+TGG | + | chr4_3:56091874-56091893 | None:intergenic | 20.0% |
| !! | GTTGCATAATTGAATAATTT+AGG | + | chr4_3:56092608-56092627 | None:intergenic | 20.0% |
| !! | CCGTAAAAATGATTATTATT+TGG | - | chr4_3:56092824-56092843 | Msa0649450:CDS | 20.0% |
| ! | TACAGTTACAAAGTTAGATT+TGG | - | chr4_3:56087756-56087775 | Msa0649450:three_prime_UTR | 25.0% |
| ! | AGCATCTAACTTTAGTTAAA+AGG | - | chr4_3:56088714-56088733 | Msa0649450:intron | 25.0% |
| ! | ATTTGTGGAATTCTTAACAT+TGG | + | chr4_3:56088789-56088808 | None:intergenic | 25.0% |
| !! | TTTCTTTCTTTAGGTGTTTT+GGG | - | chr4_3:56089132-56089151 | Msa0649450:intron | 25.0% |
| ! | CAATAAAAATTTAAGGGATG+CGG | + | chr4_3:56089225-56089244 | None:intergenic | 25.0% |
| ! | TACTAAAAATTTAAGGGATG+CGG | + | chr4_3:56089250-56089269 | None:intergenic | 25.0% |
| ! | CCTAACCTACTAAAAATTTA+AGG | + | chr4_3:56089257-56089276 | None:intergenic | 25.0% |
| !!! | CCTTAAATTTTTAGTAGGTT+AGG | - | chr4_3:56089254-56089273 | Msa0649450:CDS | 25.0% |
| !!! | ATTTTTAGTAGGTTAGGTAT+TGG | - | chr4_3:56089260-56089279 | Msa0649450:CDS | 25.0% |
| !!! | TAATTGGTTTTGTAGAATGT+GGG | - | chr4_3:56089308-56089327 | Msa0649450:CDS | 25.0% |
| ! | CTTTCTGTTAGAAAAAAGTA+CGG | - | chr4_3:56089399-56089418 | Msa0649450:intron | 25.0% |
| !! | AAAAGTACGGATAATTAATC+AGG | - | chr4_3:56089412-56089431 | Msa0649450:intron | 25.0% |
| ! | AAATCAATGGCAGTATTTAA+AGG | + | chr4_3:56090190-56090209 | None:intergenic | 25.0% |
| ! | TTTGATATTTCGTAGATATC+TGG | - | chr4_3:56090245-56090264 | Msa0649450:intron | 25.0% |
| ! | CATGTTAAAAGATAGAGTTA+TGG | + | chr4_3:56091129-56091148 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGGAAAAAAGCAA+AGG | + | chr4_3:56091540-56091559 | None:intergenic | 25.0% |
| ! | CAATGCTCAATTAACATAAT+TGG | - | chr4_3:56091789-56091808 | Msa0649450:intron | 25.0% |
| ! | AGAAAATGAACTTACATAGA+TGG | - | chr4_3:56091963-56091982 | Msa0649450:intron | 25.0% |
| ! | ACCATAAAAATAAGAGAGAA+GGG | + | chr4_3:56092174-56092193 | None:intergenic | 25.0% |
| ! | AACCATAAAAATAAGAGAGA+AGG | + | chr4_3:56092175-56092194 | None:intergenic | 25.0% |
| !!! | CTCTTATTTTTATGGTTACT+TGG | - | chr4_3:56092178-56092197 | Msa0649450:intron | 25.0% |
| !! | CAAAGTGTTAAAAACTTAGT+TGG | - | chr4_3:56092268-56092287 | Msa0649450:intron | 25.0% |
| ! | AACTCATAGTATAAGAGAAA+TGG | + | chr4_3:56092463-56092482 | None:intergenic | 25.0% |
| ! | TATATGTTATCATGACAGTA+TGG | - | chr4_3:56092519-56092538 | Msa0649450:intron | 25.0% |
| ! | TTAGTCTCAATCAACTTATA+AGG | + | chr4_3:56092915-56092934 | None:intergenic | 25.0% |
| ! | ATTGAGACTAATGATTAATG+AGG | - | chr4_3:56092924-56092943 | Msa0649450:five_prime_UTR | 25.0% |
| ! | TTGAGACTAATGATTAATGA+GGG | - | chr4_3:56092925-56092944 | Msa0649450:five_prime_UTR | 25.0% |
| TAAAACAGAATGTGTTCACT+AGG | + | chr4_3:56087784-56087803 | None:intergenic | 30.0% | |
| AGTCCAAACAAAGTTAATGT+TGG | - | chr4_3:56087981-56088000 | Msa0649450:three_prime_UTR | 30.0% | |
| ACTCCAACATTAACTTTGTT+TGG | + | chr4_3:56087987-56088006 | None:intergenic | 30.0% | |
| AAAACTTGACTCACATGAAT+TGG | + | chr4_3:56088389-56088408 | None:intergenic | 30.0% | |
| CGTACATAGAAACTTTAGTT+GGG | - | chr4_3:56088691-56088710 | Msa0649450:intron | 30.0% | |
| ACATTGGACAAATGTTAACA+TGG | + | chr4_3:56088773-56088792 | None:intergenic | 30.0% | |
| !!! | TTTCATGTGCCATTTTTTTG+TGG | - | chr4_3:56088978-56088997 | Msa0649450:intron | 30.0% |
| ! | GTTTCTTTCTTTAGGTGTTT+TGG | - | chr4_3:56089131-56089150 | Msa0649450:intron | 30.0% |
| AAAAGCAGCATCAATAAAAC+AGG | + | chr4_3:56089172-56089191 | None:intergenic | 30.0% | |
| ! | CGCATCCCTTAAATTTTTAT+TGG | - | chr4_3:56089223-56089242 | Msa0649450:CDS | 30.0% |
| GCGGACCAATAAAAATTTAA+GGG | + | chr4_3:56089231-56089250 | None:intergenic | 30.0% | |
| TGCGGACCAATAAAAATTTA+AGG | + | chr4_3:56089232-56089251 | None:intergenic | 30.0% | |
| !!! | GCATCCCTTAAATTTTTAGT+AGG | - | chr4_3:56089249-56089268 | Msa0649450:CDS | 30.0% |
| ATGACCGAAATTCATAGTAA+CGG | - | chr4_3:56089283-56089302 | Msa0649450:CDS | 30.0% | |
| TACTCCGTTACTATGAATTT+CGG | + | chr4_3:56089290-56089309 | None:intergenic | 30.0% | |
| ! | ATTCATAGTAACGGAGTAAT+TGG | - | chr4_3:56089292-56089311 | Msa0649450:CDS | 30.0% |
| !!! | GTAATTGGTTTTGTAGAATG+TGG | - | chr4_3:56089307-56089326 | Msa0649450:CDS | 30.0% |
| !!! | CGTACTTTTTTCTAACAGAA+AGG | + | chr4_3:56089401-56089420 | None:intergenic | 30.0% |
| TCTAAAAGTGAGAAGAAAAC+TGG | - | chr4_3:56089448-56089467 | Msa0649450:intron | 30.0% | |
| TTACAGCTTATAGCACAAAT+AGG | - | chr4_3:56089493-56089512 | Msa0649450:intron | 30.0% | |
| ! | TTTAAAACAGTGGCGATAAA+AGG | + | chr4_3:56089734-56089753 | None:intergenic | 30.0% |
| TTTCAGGAGAATGTTACTAA+GGG | + | chr4_3:56089870-56089889 | None:intergenic | 30.0% | |
| GTAGTGTAAAAAACTGTTTC+AGG | + | chr4_3:56089886-56089905 | None:intergenic | 30.0% | |
| ! | ATTTGGATTGAATACTGACT+TGG | + | chr4_3:56090164-56090183 | None:intergenic | 30.0% |
| GCAGTATTTAAAGGAAGATT+TGG | + | chr4_3:56090181-56090200 | None:intergenic | 30.0% | |
| TTCTGTAGACTCAAAATCAA+TGG | + | chr4_3:56090203-56090222 | None:intergenic | 30.0% | |
| TAGTAACGGTATGTCTTTAT+TGG | + | chr4_3:56090339-56090358 | None:intergenic | 30.0% | |
| ACTCTTCTTACCTCTTAAAT+TGG | - | chr4_3:56090615-56090634 | Msa0649450:CDS | 30.0% | |
| TCTTCTCAAATGAAGGTTAA+AGG | - | chr4_3:56090743-56090762 | Msa0649450:intron | 30.0% | |
| ATCATCAACAAAAATCCTGA+TGG | + | chr4_3:56090928-56090947 | None:intergenic | 30.0% | |
| !! | ATCAGGATTTTTGTTGATGA+TGG | - | chr4_3:56090927-56090946 | Msa0649450:intron | 30.0% |
| !! | GTTGATGATGGTCATTTATT+AGG | - | chr4_3:56090939-56090958 | Msa0649450:intron | 30.0% |
| AGTCATAAGTGTTATCTTTG+CGG | + | chr4_3:56091273-56091292 | None:intergenic | 30.0% | |
| GCATACTGCAGAATTATATA+TGG | + | chr4_3:56091579-56091598 | None:intergenic | 30.0% | |
| !!! | TGCAGTATGCTATTTTTCTA+AGG | - | chr4_3:56091589-56091608 | Msa0649450:intron | 30.0% |
| !!! | AGTATGCTATTTTTCTAAGG+TGG | - | chr4_3:56091592-56091611 | Msa0649450:intron | 30.0% |
| AATGAAATTCATCCAATCCT+AGG | - | chr4_3:56091715-56091734 | Msa0649450:intron | 30.0% | |
| GCACAGAAAATAAGAAAAAG+TGG | + | chr4_3:56092122-56092141 | None:intergenic | 30.0% | |
| CCATAAAAATAAGAGAGAAG+GGG | + | chr4_3:56092173-56092192 | None:intergenic | 30.0% | |
| CATATTTACATGACTCGTAA+TGG | - | chr4_3:56092392-56092411 | Msa0649450:intron | 30.0% | |
| TCTCTTATACTATGAGTTCT+TGG | - | chr4_3:56092465-56092484 | Msa0649450:intron | 30.0% | |
| ! | CATACCAAATTTTTGTCCTT+TGG | - | chr4_3:56092627-56092646 | Msa0649450:intron | 30.0% |
| TACCTCAGAAGTAGAATTAT+TGG | - | chr4_3:56092659-56092678 | Msa0649450:intron | 30.0% | |
| TCAGAAGTAGAATTATTGGA+GGG | - | chr4_3:56092663-56092682 | Msa0649450:intron | 30.0% | |
| TGAGAAGTAGATTGAATAAG+AGG | - | chr4_3:56092767-56092786 | Msa0649450:CDS | 30.0% | |
| ! | TGATTTTGTTGATGCTAGAA+CGG | - | chr4_3:56092860-56092879 | Msa0649450:five_prime_UTR | 30.0% |
| TTTCATTTCCTCTGTTTCCA+TGG | - | chr4_3:56087815-56087834 | Msa0649450:three_prime_UTR | 35.0% | |
| AATTATAACAGGGCGCATAT+CGG | - | chr4_3:56088298-56088317 | Msa0649450:CDS | 35.0% | |
| GCGTACATAGAAACTTTAGT+TGG | - | chr4_3:56088690-56088709 | Msa0649450:intron | 35.0% | |
| ! | ACTTTTGGTATACCAACATG+TGG | - | chr4_3:56088886-56088905 | Msa0649450:intron | 35.0% |
| ACGTGATCACCACAAAAAAA+TGG | + | chr4_3:56088990-56089009 | None:intergenic | 35.0% | |
| !!! | AGTTTGCTTTTTTGGTACGT+TGG | - | chr4_3:56089023-56089042 | Msa0649450:intron | 35.0% |
| CTACAAGAATGGTATGAGAT+TGG | - | chr4_3:56089663-56089682 | Msa0649450:CDS | 35.0% | |
| AAGAATGGTATGAGATTGGA+CGG | - | chr4_3:56089667-56089686 | Msa0649450:CDS | 35.0% | |
| ACGGTTAAGATCAATTACTG+CGG | - | chr4_3:56089686-56089705 | Msa0649450:CDS | 35.0% | |
| !! | TATTAGAAGCTTGTTGACCA+AGG | + | chr4_3:56089843-56089862 | None:intergenic | 35.0% |
| GTTTCAGGAGAATGTTACTA+AGG | + | chr4_3:56089871-56089890 | None:intergenic | 35.0% | |
| AGATGATTCTGAGTTCATCA+AGG | - | chr4_3:56090021-56090040 | Msa0649450:intron | 35.0% | |
| GGTATATAGATTTGGGTGTT+GGG | + | chr4_3:56090127-56090146 | None:intergenic | 35.0% | |
| TGGTATATAGATTTGGGTGT+TGG | + | chr4_3:56090128-56090147 | None:intergenic | 35.0% | |
| GGGAACTGGTATATAGATTT+GGG | + | chr4_3:56090134-56090153 | None:intergenic | 35.0% | |
| TGGGAACTGGTATATAGATT+TGG | + | chr4_3:56090135-56090154 | None:intergenic | 35.0% | |
| ATTACAGCCACCATAACATT+TGG | - | chr4_3:56090298-56090317 | Msa0649450:CDS | 35.0% | |
| TAGATTCAGGGTGATAGTAA+CGG | + | chr4_3:56090353-56090372 | None:intergenic | 35.0% | |
| TACTATCACCCTGAATCTAA+AGG | - | chr4_3:56090354-56090373 | Msa0649450:CDS | 35.0% | |
| ACTATCACCCTGAATCTAAA+GGG | - | chr4_3:56090355-56090374 | Msa0649450:CDS | 35.0% | |
| AATCCAACCCTTTAGATTCA+GGG | + | chr4_3:56090365-56090384 | None:intergenic | 35.0% | |
| AAATCCAACCCTTTAGATTC+AGG | + | chr4_3:56090366-56090385 | None:intergenic | 35.0% | |
| ! | TCTAAAGGGTTGGATTTTTC+TGG | - | chr4_3:56090369-56090388 | Msa0649450:intron | 35.0% |
| GAGTCATGTATAAAGTGTGT+CGG | + | chr4_3:56090442-56090461 | None:intergenic | 35.0% | |
| !! | GCTGTGTTACTATCTACTTT+TGG | - | chr4_3:56090465-56090484 | Msa0649450:intron | 35.0% |
| !! | CTATCTACTTTTGGTCTATG+AGG | - | chr4_3:56090474-56090493 | Msa0649450:intron | 35.0% |
| AGTTTGACATTGTAACCTCT+AGG | - | chr4_3:56090515-56090534 | Msa0649450:intron | 35.0% | |
| GTTTGACATTGTAACCTCTA+GGG | - | chr4_3:56090516-56090535 | Msa0649450:CDS | 35.0% | |
| ! | ATTTTACAACCGTCTTTGAC+GGG | + | chr4_3:56090555-56090574 | None:intergenic | 35.0% |
| ! | CATTTTACAACCGTCTTTGA+CGG | + | chr4_3:56090556-56090575 | None:intergenic | 35.0% |
| TAGATCCTTCAGAAGAACAA+TGG | - | chr4_3:56090711-56090730 | Msa0649450:intron | 35.0% | |
| AGAGATCTCTTCTCAAATGA+AGG | - | chr4_3:56090736-56090755 | Msa0649450:intron | 35.0% | |
| TCATTGCTATGATTGTTTGC+AGG | - | chr4_3:56090827-56090846 | Msa0649450:intron | 35.0% | |
| TATGATTGTTTGCAGGCTAA+AGG | - | chr4_3:56090834-56090853 | Msa0649450:intron | 35.0% | |
| ! | TCATTTCCCTTTGTTTGACA+TGG | - | chr4_3:56090857-56090876 | Msa0649450:intron | 35.0% |
| ! | ATGGCTTTTACATCTCTATC+TGG | + | chr4_3:56090909-56090928 | None:intergenic | 35.0% |
| ATAGAGATGTAAAAGCCATC+AGG | - | chr4_3:56090910-56090929 | Msa0649450:intron | 35.0% | |
| GCAAAAAATATGGGACTGTA+TGG | - | chr4_3:56090978-56090997 | Msa0649450:intron | 35.0% | |
| AAGAATGGTCTACTTACCTA+AGG | + | chr4_3:56091019-56091038 | None:intergenic | 35.0% | |
| TTAGTATTAGGCCAAAGAGT+TGG | - | chr4_3:56091044-56091063 | Msa0649450:intron | 35.0% | |
| !! | CAATTGACTTTTTACAGCCA+CGG | + | chr4_3:56091337-56091356 | None:intergenic | 35.0% |
| ! | GGGGAGTAAAACTTTTATAG+AGG | + | chr4_3:56091506-56091525 | None:intergenic | 35.0% |
| !!! | GCTATTTTTCTAAGGTGGAA+TGG | - | chr4_3:56091597-56091616 | Msa0649450:intron | 35.0% |
| CTGTTAATCATTAGTGACTG+AGG | - | chr4_3:56091643-56091662 | Msa0649450:intron | 35.0% | |
| TCAAAAAGTAAGCCTAGGAT+TGG | + | chr4_3:56091730-56091749 | None:intergenic | 35.0% | |
| GCATGAATAAGTTGTAGCAA+CGG | - | chr4_3:56091938-56091957 | Msa0649450:intron | 35.0% | |
| TACATAGATGGCTTCTTTAC+AGG | - | chr4_3:56091975-56091994 | Msa0649450:intron | 35.0% | |
| TAGTTCTCATTCCAATGATG+CGG | + | chr4_3:56092011-56092030 | None:intergenic | 35.0% | |
| AACTACACTACGAGAGAATT+TGG | - | chr4_3:56092026-56092045 | Msa0649450:intron | 35.0% | |
| ACGAGAGAATTTGGAAAATC+TGG | - | chr4_3:56092035-56092054 | Msa0649450:intron | 35.0% | |
| CGAGAGAATTTGGAAAATCT+GGG | - | chr4_3:56092036-56092055 | Msa0649450:intron | 35.0% | |
| GAGAGAATTTGGAAAATCTG+GGG | - | chr4_3:56092037-56092056 | Msa0649450:intron | 35.0% | |
| ! | TGATTGGTTATGTGATTCCA+TGG | + | chr4_3:56092072-56092091 | None:intergenic | 35.0% |
| ATGGAATCACATAACCAATC+AGG | - | chr4_3:56092071-56092090 | Msa0649450:intron | 35.0% | |
| !!! | CCCCTTCTCTCTTATTTTTA+TGG | - | chr4_3:56092170-56092189 | Msa0649450:intron | 35.0% |
| CTGTTACTATTTGTGCAGAT+TGG | - | chr4_3:56092311-56092330 | Msa0649450:CDS | 35.0% | |
| ATACTATGAGTTCTTGGAGA+TGG | - | chr4_3:56092471-56092490 | Msa0649450:intron | 35.0% | |
| TACTATGAGTTCTTGGAGAT+GGG | - | chr4_3:56092472-56092491 | Msa0649450:intron | 35.0% | |
| CGTTCCAAAGGACAAAAATT+TGG | + | chr4_3:56092634-56092653 | None:intergenic | 35.0% | |
| CTCCAATAATTCTACTTCTG+AGG | + | chr4_3:56092664-56092683 | None:intergenic | 35.0% | |
| CTCAGAAGTAGAATTATTGG+AGG | - | chr4_3:56092662-56092681 | Msa0649450:intron | 35.0% | |
| GCAAATGAAACAAAGGGAAA+AGG | + | chr4_3:56092726-56092745 | None:intergenic | 35.0% | |
| CGAATCGCAAATGAAACAAA+GGG | + | chr4_3:56092732-56092751 | None:intergenic | 35.0% | |
| TCGAATCGCAAATGAAACAA+AGG | + | chr4_3:56092733-56092752 | None:intergenic | 35.0% | |
| AGACTAATGATTAATGAGGG+CGG | - | chr4_3:56092928-56092947 | Msa0649450:five_prime_UTR | 35.0% | |
| TCAACGGACAATTTCTCAAC+CGG | - | chr4_3:56087853-56087872 | Msa0649450:three_prime_UTR | 40.0% | |
| ! | AGTTACCGAAGCTTTTCTTG+CGG | - | chr4_3:56087953-56087972 | Msa0649450:three_prime_UTR | 40.0% |
| ! | AGAACAGTGTTGCTCTGTTA+TGG | + | chr4_3:56088126-56088145 | None:intergenic | 40.0% |
| ATTATAACAGGGCGCATATC+GGG | - | chr4_3:56088299-56088318 | Msa0649450:CDS | 40.0% | |
| CTAACACATTCAAGAACCAC+AGG | + | chr4_3:56088339-56088358 | None:intergenic | 40.0% | |
| AATGTGTTAGAGAAGCAGAG+AGG | - | chr4_3:56088349-56088368 | Msa0649450:intron | 40.0% | |
| GTTAACTTAACGCCACATGT+TGG | + | chr4_3:56088901-56088920 | None:intergenic | 40.0% | |
| AAAAAAGCAAACTCAGCTGG+TGG | + | chr4_3:56089016-56089035 | None:intergenic | 40.0% | |
| !!! | ACCAGCTGAGTTTGCTTTTT+TGG | - | chr4_3:56089015-56089034 | Msa0649450:intron | 40.0% |
| ACCAAAAAAGCAAACTCAGC+TGG | + | chr4_3:56089019-56089038 | None:intergenic | 40.0% | |
| AGAACACTGCAACAACAAGT+AGG | + | chr4_3:56089062-56089081 | None:intergenic | 40.0% | |
| AAATTACACCACACAGAGCA+AGG | + | chr4_3:56089111-56089130 | None:intergenic | 40.0% | |
| !!! | TAGGTGTTTTGGGATGATGT+AGG | - | chr4_3:56089142-56089161 | Msa0649450:intron | 40.0% |
| !!! | AGGTGTTTTGGGATGATGTA+GGG | - | chr4_3:56089143-56089162 | Msa0649450:intron | 40.0% |
| TTGTAGAATGTGGGACTTGT+TGG | - | chr4_3:56089317-56089336 | Msa0649450:CDS | 40.0% | |
| ! | GAGAAGAAAACTGGTCTGTT+TGG | - | chr4_3:56089457-56089476 | Msa0649450:intron | 40.0% |
| TGCGGCACATATTTAATGCT+CGG | - | chr4_3:56089704-56089723 | Msa0649450:CDS | 40.0% | |
| ACCGTTTCAAATGTTTGAGC+AGG | - | chr4_3:56089936-56089955 | Msa0649450:CDS | 40.0% | |
| CCCTGCTCAAACATTTGAAA+CGG | + | chr4_3:56089940-56089959 | None:intergenic | 40.0% | |
| CCGTTTCAAATGTTTGAGCA+GGG | - | chr4_3:56089937-56089956 | Msa0649450:CDS | 40.0% | |
| ATATGTATGCTTCCACCCAT+GGG | + | chr4_3:56089971-56089990 | None:intergenic | 40.0% | |
| TAAACGAATAGCTGCAGTTC+AGG | - | chr4_3:56090045-56090064 | Msa0649450:intron | 40.0% | |
| !! | ATTGAATACTGACTTGGACC+AGG | + | chr4_3:56090158-56090177 | None:intergenic | 40.0% |
| CATCTCTCCAAATGTTATGG+TGG | + | chr4_3:56090308-56090327 | None:intergenic | 40.0% | |
| CAGCATCTCTCCAAATGTTA+TGG | + | chr4_3:56090311-56090330 | None:intergenic | 40.0% | |
| CATAACATTTGGAGAGATGC+TGG | - | chr4_3:56090309-56090328 | Msa0649450:CDS | 40.0% | |
| ! | GTTGGATTTTTCTGGACTGA+TGG | - | chr4_3:56090377-56090396 | Msa0649450:intron | 40.0% |
| ! | TGGACTGATGGATGACATTA+AGG | - | chr4_3:56090389-56090408 | Msa0649450:intron | 40.0% |
| TCTCTCCATTGTTCTTCTGA+AGG | + | chr4_3:56090719-56090738 | None:intergenic | 40.0% | |
| GGTATGCCATGTCAAACAAA+GGG | + | chr4_3:56090866-56090885 | None:intergenic | 40.0% | |
| TGGTATGCCATGTCAAACAA+AGG | + | chr4_3:56090867-56090886 | None:intergenic | 40.0% | |
| TTGTTTGACATGGCATACCA+AGG | - | chr4_3:56090867-56090886 | Msa0649450:intron | 40.0% | |
| GATTTCCACTAGCAAAACCT+TGG | + | chr4_3:56090887-56090906 | None:intergenic | 40.0% | |
| ! | TATTAGGCCAAAGAGTTGGT+TGG | - | chr4_3:56091048-56091067 | Msa0649450:intron | 40.0% |
| AGTAGTTCCAACCAACTCTT+TGG | + | chr4_3:56091058-56091077 | None:intergenic | 40.0% | |
| !! | TTTAGTTTGAAGCCTTGAGC+TGG | - | chr4_3:56091211-56091230 | Msa0649450:intron | 40.0% |
| AAGTTCTGTAAACCAGCTCA+AGG | + | chr4_3:56091226-56091245 | None:intergenic | 40.0% | |
| ! | TGAGCTGGTTTACAGAACTT+TGG | - | chr4_3:56091226-56091245 | Msa0649450:intron | 40.0% |
| ! | TTTTCGCAAAGTAAGCTGCA+AGG | + | chr4_3:56091303-56091322 | None:intergenic | 40.0% |
| ATCCAGACTTGAAGAAGTTG+TGG | - | chr4_3:56091430-56091449 | Msa0649450:intron | 40.0% | |
| GTTGTGGCTTAAAGAAGTCA+AGG | - | chr4_3:56091446-56091465 | Msa0649450:intron | 40.0% | |
| AAAAAAGCAAAGGCTGTGAG+AGG | + | chr4_3:56091530-56091549 | None:intergenic | 40.0% | |
| ATCATTAGTGACTGAGGCTA+TGG | - | chr4_3:56091649-56091668 | Msa0649450:intron | 40.0% | |
| TGAGGTCAAAAAGTAAGCCT+AGG | + | chr4_3:56091735-56091754 | None:intergenic | 40.0% | |
| GATGGCTTCTTTACAGGTTA+TGG | - | chr4_3:56091981-56092000 | Msa0649450:intron | 40.0% | |
| GTTATGTGATTCCATGGCAA+TGG | + | chr4_3:56092066-56092085 | None:intergenic | 40.0% | |
| TGCATTCAACTGAACCTGAT+TGG | + | chr4_3:56092088-56092107 | None:intergenic | 40.0% | |
| GTGCTTATTGTAGTTGCTTG+AGG | - | chr4_3:56092138-56092157 | Msa0649450:intron | 40.0% | |
| TACTTGGAGACCAAGTATCT+TGG | - | chr4_3:56092194-56092213 | Msa0649450:intron | 40.0% | |
| TGACTCGTAATGGTCGTATA+AGG | - | chr4_3:56092402-56092421 | Msa0649450:intron | 40.0% | |
| TGTTATCATGACAGTATGGC+TGG | - | chr4_3:56092523-56092542 | Msa0649450:intron | 40.0% | |
| !! | CAGTATGGCTGGTCTTAATA+CGG | - | chr4_3:56092534-56092553 | Msa0649450:intron | 40.0% |
| !! | AGTATGGCTGGTCTTAATAC+GGG | - | chr4_3:56092535-56092554 | Msa0649450:intron | 40.0% |
| ! | TGAGGTATTTGTCGTTCCAA+AGG | + | chr4_3:56092646-56092665 | None:intergenic | 40.0% |
| GAGGGAGCTGAATAAAAGTT+GGG | - | chr4_3:56092681-56092700 | Msa0649450:CDS | 40.0% | |
| GCGATTCGCAATCTTCTCAA+CGG | - | chr4_3:56087837-56087856 | Msa0649450:three_prime_UTR | 45.0% | |
| ! | CGAAGACATGAATCTAGCTC+CGG | + | chr4_3:56087889-56087908 | None:intergenic | 45.0% |
| GAGCTAGATTCATGTCTTCG+TGG | - | chr4_3:56087889-56087908 | Msa0649450:three_prime_UTR | 45.0% | |
| GATTCATGTCTTCGTGGTTC+AGG | - | chr4_3:56087895-56087914 | Msa0649450:three_prime_UTR | 45.0% | |
| CTGATCCGCAAGAAAAGCTT+CGG | + | chr4_3:56087961-56087980 | None:intergenic | 45.0% | |
| TCATGATTCCTTGCTCTGTG+TGG | - | chr4_3:56089100-56089119 | Msa0649450:intron | 45.0% | |
| CAAGGTAGGTCTGAATCTGA+TGG | + | chr4_3:56089825-56089844 | None:intergenic | 45.0% | |
| CATCAGATTCAGACCTACCT+TGG | - | chr4_3:56089823-56089842 | Msa0649450:intron | 45.0% | |
| !! | AGAAGCTTGTTGACCAAGGT+AGG | + | chr4_3:56089839-56089858 | None:intergenic | 45.0% |
| CATATGTATGCTTCCACCCA+TGG | + | chr4_3:56089972-56089991 | None:intergenic | 45.0% | |
| ! | CATGGGTGGAAGCATACATA+TGG | - | chr4_3:56089970-56089989 | Msa0649450:CDS | 45.0% |
| GGTTCAAGAATCACTGAAGC+TGG | - | chr4_3:56089991-56090010 | Msa0649450:CDS | 45.0% | |
| GAATCACTGAAGCTGGCATA+TGG | - | chr4_3:56089998-56090017 | Msa0649450:CDS | 45.0% | |
| ! | CTGCAGTTCAGGCTTTATCT+GGG | - | chr4_3:56090056-56090075 | Msa0649450:intron | 45.0% |
| TCTATATACCAGTTCCCACC+TGG | - | chr4_3:56090137-56090156 | Msa0649450:intron | 45.0% | |
| !! | AATACTGACTTGGACCAGGT+GGG | + | chr4_3:56090154-56090173 | None:intergenic | 45.0% |
| TCACCCTGAATCTAAAGGGT+TGG | - | chr4_3:56090359-56090378 | Msa0649450:intron | 45.0% | |
| ! | ATTGTAACCTCTAGGGACGA+AGG | - | chr4_3:56090523-56090542 | Msa0649450:CDS | 45.0% |
| AGGTCAAATCCCGTCAAAGA+CGG | - | chr4_3:56090543-56090562 | Msa0649450:CDS | 45.0% | |
| AGCAGAAAGAAAGAACCGTC+TGG | + | chr4_3:56090662-56090681 | None:intergenic | 45.0% | |
| TCTGAAGGATCTACTCCAGT+AGG | + | chr4_3:56090704-56090723 | None:intergenic | 45.0% | |
| ! | GCATACCAAGGTTTTGCTAG+TGG | - | chr4_3:56090879-56090898 | Msa0649450:intron | 45.0% |
| CGAAAATGAGAAACAAGCCG+TGG | - | chr4_3:56091317-56091336 | Msa0649450:intron | 45.0% | |
| !! | AGAGGTGGATTGCTGTACAT+GGG | + | chr4_3:56091375-56091394 | None:intergenic | 45.0% |
| !! | AAGAGGTGGATTGCTGTACA+TGG | + | chr4_3:56091376-56091395 | None:intergenic | 45.0% |
| TACAGCAATCCACCTCTTCA+TGG | - | chr4_3:56091378-56091397 | Msa0649450:intron | 45.0% | |
| ! | CTTGTCGTTTCAACTGTCCT+TGG | - | chr4_3:56091405-56091424 | Msa0649450:intron | 45.0% |
| TCTTCAAGTCTGGATCACCA+AGG | + | chr4_3:56091425-56091444 | None:intergenic | 45.0% | |
| AGCCACAACTTCTTCAAGTC+TGG | + | chr4_3:56091435-56091454 | None:intergenic | 45.0% | |
| TGGAGACCAAGTATCTTGGT+AGG | - | chr4_3:56092198-56092217 | Msa0649450:intron | 45.0% | |
| GGAGACCAAGTATCTTGGTA+GGG | - | chr4_3:56092199-56092218 | Msa0649450:intron | 45.0% | |
| GAGACCAAGTATCTTGGTAG+GGG | - | chr4_3:56092200-56092219 | Msa0649450:intron | 45.0% | |
| AAGTATCTTGGTAGGGGAGA+GGG | - | chr4_3:56092206-56092225 | Msa0649450:intron | 45.0% | |
| ATTGGCATGTTCTGCTACAG+CGG | - | chr4_3:56092329-56092348 | Msa0649450:CDS | 45.0% | |
| GTCAAACGATCAACCTGTTC+TGG | + | chr4_3:56092362-56092381 | None:intergenic | 45.0% | |
| GGAGGGAGCTGAATAAAAGT+TGG | - | chr4_3:56092680-56092699 | Msa0649450:CDS | 45.0% | |
| GAGAAGATTGCGAATCGCCA+TGG | + | chr4_3:56087835-56087854 | None:intergenic | 50.0% | |
| ! | CATGAATCTAGCTCCGGTGA+CGG | + | chr4_3:56087883-56087902 | None:intergenic | 50.0% |
| GAACATCGAACCAGCTCCTA+AGG | - | chr4_3:56087917-56087936 | Msa0649450:three_prime_UTR | 50.0% | |
| AGGATTGGATCCTTAGGAGC+TGG | + | chr4_3:56087930-56087949 | None:intergenic | 50.0% | |
| GCTCCTAAGGATCCAATCCT+CGG | - | chr4_3:56087930-56087949 | Msa0649450:three_prime_UTR | 50.0% | |
| ACTCCGAGGATTGGATCCTT+AGG | + | chr4_3:56087936-56087955 | None:intergenic | 50.0% | |
| GAAAAGCTTCGGTAACTCCG+AGG | + | chr4_3:56087950-56087969 | None:intergenic | 50.0% | |
| GGATGACAATGGAAAGCCTG+TGG | - | chr4_3:56088320-56088339 | Msa0649450:CDS | 50.0% | |
| GAAGCAGAGAGGAGAATTGC+AGG | - | chr4_3:56088360-56088379 | Msa0649450:intron | 50.0% | |
| !! | AGCAGGGAGTATCTTCCCAT+GGG | - | chr4_3:56089953-56089972 | Msa0649450:CDS | 50.0% |
| ! | GCTGCAGTTCAGGCTTTATC+TGG | - | chr4_3:56090055-56090074 | Msa0649450:intron | 50.0% |
| ! | GTTCAGGCTTTATCTGGGAC+TGG | - | chr4_3:56090061-56090080 | Msa0649450:intron | 50.0% |
| !! | GAATACTGACTTGGACCAGG+TGG | + | chr4_3:56090155-56090174 | None:intergenic | 50.0% |
| GATTTGACCTTCGTCCCTAG+AGG | + | chr4_3:56090533-56090552 | None:intergenic | 50.0% | |
| ! | CTTACACAGAGTGCTCCAGA+CGG | - | chr4_3:56090644-56090663 | Msa0649450:CDS | 50.0% |
| GCTTGTGCTCACAATCCTAC+TGG | - | chr4_3:56090686-56090705 | Msa0649450:CDS | 50.0% | |
| ! | ACCTAAGGCATCCAACTCTC+TGG | + | chr4_3:56091004-56091023 | None:intergenic | 50.0% |
| TGGATTGCTGTACATGGGTC+TGG | + | chr4_3:56091370-56091389 | None:intergenic | 50.0% | |
| ACAAGTGCTCCATGAAGAGG+TGG | + | chr4_3:56091390-56091409 | None:intergenic | 50.0% | |
| ACGACAAGTGCTCCATGAAG+AGG | + | chr4_3:56091393-56091412 | None:intergenic | 50.0% | |
| AAGCAAAGGCTGTGAGAGGT+GGG | + | chr4_3:56091526-56091545 | None:intergenic | 50.0% | |
| AAAGCAAAGGCTGTGAGAGG+TGG | + | chr4_3:56091527-56091546 | None:intergenic | 50.0% | |
| GTTATGGCAGACCGCATCAT+TGG | - | chr4_3:56091997-56092016 | Msa0649450:intron | 50.0% | |
| CTCTCCCCTACCAAGATACT+TGG | + | chr4_3:56092207-56092226 | None:intergenic | 50.0% | |
| CAAGTATCTTGGTAGGGGAG+AGG | - | chr4_3:56092205-56092224 | Msa0649450:intron | 50.0% | |
| TTGGCATGTTCTGCTACAGC+GGG | - | chr4_3:56092330-56092349 | Msa0649450:CDS | 50.0% | |
| GGTCTTAATACGGGCAACGT+TGG | - | chr4_3:56092544-56092563 | Msa0649450:intron | 50.0% | |
| TACGGGCAACGTTGGATATG+TGG | - | chr4_3:56092552-56092571 | Msa0649450:intron | 50.0% | |
| TGTGGCTAACGCTATCAACG+AGG | - | chr4_3:56092570-56092589 | Msa0649450:intron | 50.0% | |
| GCGAATCGCCATGGAAACAG+AGG | + | chr4_3:56087826-56087845 | None:intergenic | 55.0% | |
| GCTTCGGTAACTCCGAGGAT+TGG | + | chr4_3:56087945-56087964 | None:intergenic | 55.0% | |
| GGCGCATATCGGGATGACAA+TGG | - | chr4_3:56088309-56088328 | Msa0649450:CDS | 55.0% | |
| !! | GAGCAGGGAGTATCTTCCCA+TGG | - | chr4_3:56089952-56089971 | Msa0649450:CDS | 55.0% |
| !! | AGGGAGTATCTTCCCATGGG+TGG | - | chr4_3:56089956-56089975 | Msa0649450:CDS | 55.0% |
| GGACTGTATGGCCAGAGAGT+TGG | - | chr4_3:56090990-56091009 | Msa0649450:intron | 55.0% | |
| GCCAGAGAGTTGGATGCCTT+AGG | - | chr4_3:56091000-56091019 | Msa0649450:intron | 55.0% | |
| AGCAAAGGCTGTGAGAGGTG+GGG | + | chr4_3:56091525-56091544 | None:intergenic | 55.0% | |
| ! | ATCTGGGGTCTCCATTGCCA+TGG | - | chr4_3:56092052-56092071 | Msa0649450:intron | 55.0% |
| GACTTGGACCAGGTGGGAAC+TGG | + | chr4_3:56090148-56090167 | None:intergenic | 60.0% | |
| CAGCGGGATGACACCAGAAC+AGG | - | chr4_3:56092346-56092365 | Msa0649450:CDS | 60.0% | |
| CTCAACCGGAGCTCCGTCAC+CGG | - | chr4_3:56087867-56087886 | Msa0649450:three_prime_UTR | 65.0% | |
| !! | TAGCTCCGGTGACGGAGCTC+CGG | + | chr4_3:56087875-56087894 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 56087708 | 56092972 | 56087708 | ID=Msa0649450;Name=Msa0649450 |
| chr4_3 | mRNA | 56087708 | 56092972 | 56087708 | ID=Msa0649450-mRNA-1;Parent=Msa0649450;Name=Msa0649450-mRNA-1;_AED=0.06;_eAED=0.06;_QI=126|1|1|1|1|1|10|363|424 |
| chr4_3 | exon | 56087708 | 56088143 | 56087708 | ID=Msa0649450-mRNA-1:exon:14534;Parent=Msa0649450-mRNA-1 |
| chr4_3 | exon | 56088257 | 56088351 | 56088257 | ID=Msa0649450-mRNA-1:exon:14533;Parent=Msa0649450-mRNA-1 |
| chr4_3 | exon | 56088588 | 56088683 | 56088588 | ID=Msa0649450-mRNA-1:exon:14532;Parent=Msa0649450-mRNA-1 |
| chr4_3 | exon | 56089213 | 56089372 | 56089213 | ID=Msa0649450-mRNA-1:exon:14531;Parent=Msa0649450-mRNA-1 |
| chr4_3 | exon | 56089659 | 56089831 | 56089659 | ID=Msa0649450-mRNA-1:exon:14530;Parent=Msa0649450-mRNA-1 |
| chr4_3 | exon | 56089923 | 56090027 | 56089923 | ID=Msa0649450-mRNA-1:exon:14529;Parent=Msa0649450-mRNA-1 |
| chr4_3 | exon | 56090270 | 56090375 | 56090270 | ID=Msa0649450-mRNA-1:exon:14528;Parent=Msa0649450-mRNA-1 |
| chr4_3 | exon | 56090516 | 56090722 | 56090516 | ID=Msa0649450-mRNA-1:exon:14527;Parent=Msa0649450-mRNA-1 |
| chr4_3 | exon | 56092286 | 56092371 | 56092286 | ID=Msa0649450-mRNA-1:exon:14526;Parent=Msa0649450-mRNA-1 |
| chr4_3 | exon | 56092673 | 56092972 | 56092673 | ID=Msa0649450-mRNA-1:exon:14525;Parent=Msa0649450-mRNA-1 |
| chr4_3 | five_prime_UTR | 56092847 | 56092972 | 56092847 | ID=Msa0649450-mRNA-1:five_prime_utr;Parent=Msa0649450-mRNA-1 |
| chr4_3 | CDS | 56092673 | 56092846 | 56092673 | ID=Msa0649450-mRNA-1:cds;Parent=Msa0649450-mRNA-1 |
| chr4_3 | CDS | 56092286 | 56092371 | 56092286 | ID=Msa0649450-mRNA-1:cds;Parent=Msa0649450-mRNA-1 |
| chr4_3 | CDS | 56090516 | 56090722 | 56090516 | ID=Msa0649450-mRNA-1:cds;Parent=Msa0649450-mRNA-1 |
| chr4_3 | CDS | 56090270 | 56090375 | 56090270 | ID=Msa0649450-mRNA-1:cds;Parent=Msa0649450-mRNA-1 |
| chr4_3 | CDS | 56089923 | 56090027 | 56089923 | ID=Msa0649450-mRNA-1:cds;Parent=Msa0649450-mRNA-1 |
| chr4_3 | CDS | 56089659 | 56089831 | 56089659 | ID=Msa0649450-mRNA-1:cds;Parent=Msa0649450-mRNA-1 |
| chr4_3 | CDS | 56089213 | 56089372 | 56089213 | ID=Msa0649450-mRNA-1:cds;Parent=Msa0649450-mRNA-1 |
| chr4_3 | CDS | 56088588 | 56088683 | 56088588 | ID=Msa0649450-mRNA-1:cds;Parent=Msa0649450-mRNA-1 |
| chr4_3 | CDS | 56088257 | 56088351 | 56088257 | ID=Msa0649450-mRNA-1:cds;Parent=Msa0649450-mRNA-1 |
| chr4_3 | CDS | 56088071 | 56088143 | 56088071 | ID=Msa0649450-mRNA-1:cds;Parent=Msa0649450-mRNA-1 |
| chr4_3 | three_prime_UTR | 56087708 | 56088070 | 56087708 | ID=Msa0649450-mRNA-1:three_prime_utr;Parent=Msa0649450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
