AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0300430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300430 MtrunA17_Chr2g0325481 97.826 368 5 1 1 365 1 368 0.0 751
Msa0300430 MtrunA17_Chr4g0041011 75.000 360 85 1 4 363 9 363 0.0 584
Msa0300430 MtrunA17_Chr2g0283581 59.563 366 137 5 1 363 1 358 2.07e-159 451
Msa0300430 MtrunA17_Chr4g0045951 55.890 365 158 2 1 364 1 363 1.23e-152 434
Msa0300430 MtrunA17_Chr4g0045941 55.191 366 147 3 1 364 1 351 8.73e-149 424
Msa0300430 MtrunA17_Chr3g0097891 54.829 321 142 2 47 364 31 351 1.63e-133 385
Msa0300430 MtrunA17_Chr2g0314801 55.799 319 137 3 46 360 32 350 2.28e-131 380
Msa0300430 MtrunA17_Chr3g0085071 52.905 327 153 1 38 363 37 363 2.29e-130 377
Msa0300430 MtrunA17_Chr3g0091031 50.448 335 165 1 30 363 14 348 2.24e-127 369
Msa0300430 MtrunA17_Chr3g0085081 52.201 318 151 1 47 363 31 348 1.05e-125 365
Msa0300430 MtrunA17_Chr5g0413851 51.796 334 155 4 35 364 29 360 6.61e-123 358
Msa0300430 MtrunA17_Chr3g0105301 44.800 375 190 4 7 364 3 377 4.35e-116 342
Msa0300430 MtrunA17_Chr5g0430371 44.236 373 167 5 17 364 44 400 4.12e-115 340
Msa0300430 MtrunA17_Chr2g0314791 45.289 329 158 8 47 364 29 346 3.24e-101 303
Msa0300430 MtrunA17_Chr1g0171171 42.941 340 170 8 39 363 45 375 1.07e-95 290
Msa0300430 MtrunA17_Chr1g0210771 38.040 347 194 6 31 363 43 382 1.31e-91 279
Msa0300430 MtrunA17_Chr1g0175671 38.400 375 204 6 15 364 138 510 2.79e-90 280
Msa0300430 MtrunA17_Chr7g0258851 40.233 343 180 6 46 364 247 588 1.85e-89 280
Msa0300430 MtrunA17_Chr4g0071391 37.318 343 186 6 46 363 108 446 4.09e-84 262
Msa0300430 MtrunA17_Chr5g0413271 34.637 358 217 4 23 364 121 477 1.00e-81 257
Msa0300430 MtrunA17_Chr3g0113671 39.017 346 184 9 47 365 106 451 1.48e-81 256
Msa0300430 MtrunA17_Chr4g0068111 38.441 372 198 10 23 364 84 454 2.10e-81 256
Msa0300430 MtrunA17_Chr7g0269991 39.759 332 176 8 47 359 137 463 2.73e-80 253
Msa0300430 MtrunA17_Chr1g0213281 36.827 353 193 8 39 364 167 516 1.27e-78 250
Msa0300430 MtrunA17_Chr5g0437291 38.109 349 186 10 47 365 165 513 1.28e-78 250
Msa0300430 MtrunA17_Chr8g0368461 36.667 360 186 7 43 364 174 529 2.05e-77 248
Msa0300430 MtrunA17_Chr3g0114101 34.085 399 227 10 2 364 33 431 8.08e-76 240
Msa0300430 MtrunA17_Chr5g0437601 37.069 348 194 7 42 364 78 425 3.15e-75 239
Msa0300430 MtrunA17_Chr4g0006991 34.555 382 208 10 24 363 46 427 1.20e-74 237
Msa0300430 MtrunA17_Chr8g0360521 35.613 351 196 9 40 364 64 410 4.34e-71 228
Msa0300430 MtrunA17_Chr1g0209921 48.261 230 110 7 44 268 41 266 2.19e-69 218
Msa0300430 MtrunA17_Chr2g0287901 37.059 340 188 7 47 361 97 435 7.84e-69 223
Msa0300430 MtrunA17_Chr7g0259711 36.812 345 189 8 47 364 91 433 3.28e-68 221
Msa0300430 MtrunA17_Chr4g0005481 35.632 348 198 9 36 359 97 442 3.33e-68 221
Msa0300430 MtrunA17_Chr4g0005491 32.687 361 209 9 33 364 53 408 5.48e-67 217
Msa0300430 MtrunA17_Chr7g0243301 31.969 391 230 10 4 365 28 411 1.12e-66 216
Msa0300430 MtrunA17_Chr7g0242701 35.838 346 195 9 44 363 83 427 4.79e-66 215
Msa0300430 MtrunA17_Chr3g0126021 36.202 337 191 7 47 364 129 460 3.00e-62 206
Msa0300430 MtrunA17_Chr8g0384151 30.029 343 220 6 37 364 80 417 2.61e-53 182
Msa0300430 MtrunA17_Chr1g0178081 31.778 343 154 10 47 364 55 342 3.65e-50 171
Msa0300430 MtrunA17_Chr6g0456691 28.753 393 232 11 4 363 42 419 6.03e-39 144
Msa0300430 MtrunA17_Chr5g0414051 29.592 392 221 16 9 359 39 416 5.65e-38 141
Msa0300430 MtrunA17_Chr5g0414061 30.049 406 224 19 4 359 39 434 5.68e-38 141
Msa0300430 MtrunA17_Chr1g0188191 28.792 389 230 13 12 359 195 577 6.54e-38 143
Msa0300430 MtrunA17_Chr6g0476041 27.895 380 232 11 16 359 137 510 9.92e-37 139
Msa0300430 MtrunA17_Chr6g0456681 29.040 396 228 14 3 359 23 404 1.77e-34 131
Msa0300430 MtrunA17_Chr6g0455901 30.725 345 204 12 47 359 71 412 2.67e-34 130
Msa0300430 MtrunA17_Chr8g0384421 31.389 360 206 17 35 363 123 472 2.67e-34 131
Msa0300430 MtrunA17_Chr5g0414091 30.636 346 204 11 47 359 85 427 5.23e-34 130
Msa0300430 MtrunA17_Chr8g0347321 27.225 382 226 11 20 363 72 439 5.46e-33 127
Msa0300430 MtrunA17_Chr2g0283851 28.940 349 203 13 48 359 56 396 5.88e-32 124
Msa0300430 MtrunA17_Chr5g0414041 29.480 346 208 12 47 359 87 429 8.84e-32 124
Msa0300430 MtrunA17_Chr7g0226991 28.010 382 221 16 15 358 32 397 3.15e-31 122
Msa0300430 MtrunA17_Chr4g0049421 27.666 347 211 13 47 359 48 388 4.14e-30 119
Msa0300430 MtrunA17_Chr8g0391481 26.862 376 228 13 22 359 2 368 6.22e-30 118
Msa0300430 MtrunA17_Chr3g0085101 44.737 114 62 1 231 343 1 114 3.33e-29 109
Msa0300430 MtrunA17_Chr4g0070341 29.395 347 208 15 47 363 132 471 3.99e-29 117
Msa0300430 MtrunA17_Chr6g0451321 28.788 396 218 18 14 363 80 457 2.55e-28 115
Msa0300430 MtrunA17_Chr8g0387921 27.066 351 215 13 44 359 71 415 1.16e-27 112
Msa0300430 MtrunA17_Chr3g0140371 28.080 349 205 13 47 359 18 356 3.33e-27 110
Msa0300430 MtrunA17_Chr7g0221271 36.719 128 81 0 46 173 78 205 1.49e-22 94.4
Msa0300430 MtrunA17_Chr7g0221291 44.444 90 50 0 46 135 78 167 3.65e-22 92.0
Msa0300430 MtrunA17_Chr5g0429211 38.532 109 60 2 74 176 162 269 2.01e-17 81.6
Msa0300430 MtrunA17_Chr1g0209931 44.944 89 44 2 279 365 9 94 9.02e-17 75.1
Msa0300430 MtrunA17_Chr2g0287931 32.773 119 66 3 107 211 2 120 1.90e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300430 AT2G42570.1 66.279 344 111 3 26 364 22 365 3.06e-180 504
Msa0300430 AT2G31110.2 62.928 321 118 1 44 363 42 362 8.63e-166 468
Msa0300430 AT1G29050.1 59.882 339 134 2 27 363 40 378 1.57e-157 447
Msa0300430 AT2G34070.1 59.692 325 129 2 41 363 59 383 2.28e-150 429
Msa0300430 AT3G14850.2 55.108 323 141 2 42 360 29 351 4.07e-131 379
Msa0300430 AT1G78710.1 50.153 327 157 4 42 364 33 357 3.04e-121 354
Msa0300430 AT2G30900.1 50.000 324 156 4 47 364 43 366 1.48e-119 350
Msa0300430 AT2G34070.2 60.643 249 96 2 117 363 1 249 1.89e-111 325
Msa0300430 AT5G58600.1 47.619 336 158 5 47 364 66 401 1.36e-110 329
Msa0300430 AT2G31110.3 61.927 218 83 0 44 261 42 259 7.96e-108 317
Msa0300430 AT2G30010.1 45.322 342 163 5 47 364 56 397 3.09e-105 315
Msa0300430 AT2G30010.2 45.322 342 163 5 47 364 99 440 3.22e-105 317
Msa0300430 AT2G31110.1 63.768 207 74 1 158 363 8 214 4.30e-104 305
Msa0300430 AT3G14850.1 55.242 248 107 2 117 360 1 248 2.40e-95 285
Msa0300430 AT3G54260.1 42.515 334 167 6 47 364 51 375 6.78e-92 280
Msa0300430 AT5G06700.1 42.274 343 171 7 47 364 255 595 4.45e-91 285
Msa0300430 AT3G12060.1 39.678 373 197 7 19 364 165 536 1.59e-89 280
Msa0300430 AT1G78710.2 41.896 327 131 5 42 364 26 297 1.41e-87 266
Msa0300430 AT2G30900.2 50.424 236 109 3 47 280 43 272 1.31e-84 258
Msa0300430 AT3G62390.1 38.544 371 201 9 19 364 104 472 1.83e-82 259
Msa0300430 AT5G58600.2 51.786 224 106 2 47 268 66 289 5.50e-82 252
Msa0300430 AT5G20590.1 38.571 350 184 9 41 364 136 480 7.70e-82 258
Msa0300430 AT5G49340.1 37.960 353 190 8 39 364 92 442 1.23e-80 254
Msa0300430 AT1G60790.1 38.211 369 194 10 26 364 169 533 3.88e-80 255
Msa0300430 AT3G55990.1 37.464 347 190 9 46 365 139 485 3.76e-77 246
Msa0300430 AT2G40150.1 35.977 353 193 8 46 365 70 422 8.64e-76 240
Msa0300430 AT3G11030.1 38.000 350 179 10 47 364 106 449 8.53e-75 239
Msa0300430 AT2G40160.2 35.817 349 192 9 47 364 77 424 3.44e-74 237
Msa0300430 AT2G40160.1 36.047 344 188 9 47 359 77 419 5.02e-74 236
Msa0300430 AT1G73140.1 36.544 353 194 8 38 364 58 406 4.32e-73 233
Msa0300430 AT5G19160.1 36.388 371 193 10 24 361 82 442 5.74e-73 234
Msa0300430 AT5G01360.2 35.756 344 195 7 46 363 35 378 5.80e-72 229
Msa0300430 AT5G01360.1 35.756 344 195 7 46 363 91 434 2.01e-71 229
Msa0300430 AT5G01620.3 34.402 343 198 8 42 359 113 453 1.04e-70 228
Msa0300430 AT5G01620.2 34.402 343 198 8 42 359 105 445 1.10e-70 228
Msa0300430 AT5G01620.1 34.402 343 198 8 42 359 105 445 1.10e-70 228
Msa0300430 AT2G40320.1 35.632 348 199 8 42 364 76 423 8.05e-70 225
Msa0300430 AT3G06080.2 36.550 342 189 7 47 361 103 443 1.23e-69 226
Msa0300430 AT5G06230.2 35.574 357 201 7 36 364 10 365 4.60e-68 219
Msa0300430 AT5G06230.1 35.574 357 201 7 36 364 51 406 1.11e-67 219
Msa0300430 AT3G11570.1 37.538 325 180 7 63 365 98 421 5.75e-67 218
Msa0300430 AT2G38320.1 33.333 351 204 9 44 364 55 405 3.83e-64 210
Msa0300430 AT1G48880.1 33.973 365 194 8 21 364 102 440 4.72e-62 205
Msa0300430 AT3G62390.2 38.258 264 145 6 26 271 111 374 3.07e-57 192
Msa0300430 AT5G20590.2 39.431 246 128 7 41 269 136 377 1.48e-55 186
Msa0300430 AT5G19160.2 36.923 260 144 4 24 269 82 335 9.10e-54 181
Msa0300430 AT2G38320.2 31.056 322 194 7 71 364 1 322 4.16e-53 179
Msa0300430 AT2G40160.3 35.470 234 139 4 47 268 77 310 3.17e-50 171
Msa0300430 AT3G06080.1 37.131 237 135 3 47 269 103 339 4.27e-49 169
Msa0300430 AT5G06230.3 35.827 254 143 4 36 269 51 304 4.40e-46 160
Msa0300430 AT5G51640.1 28.571 378 222 11 23 359 114 484 5.19e-40 148
Msa0300430 AT1G70230.1 29.513 349 198 11 47 363 79 411 6.06e-40 146
Msa0300430 AT2G14530.1 29.049 389 240 12 7 363 22 406 7.60e-40 146
Msa0300430 AT4G25360.1 27.179 390 225 11 16 359 144 520 7.51e-37 140
Msa0300430 AT4G25360.2 27.179 390 225 11 16 359 144 520 7.51e-37 140
Msa0300430 AT5G64020.1 29.494 356 208 12 47 363 57 408 5.21e-35 133
Msa0300430 AT5G64470.3 26.744 344 223 10 47 364 55 395 1.47e-34 131
Msa0300430 AT1G01430.1 29.301 372 215 12 32 365 88 449 1.34e-33 130
Msa0300430 AT5G64470.2 26.857 350 221 11 47 364 55 401 4.15e-33 127
Msa0300430 AT5G15890.1 28.065 367 219 12 25 359 165 518 1.47e-32 128
Msa0300430 AT5G15900.1 26.934 349 217 11 47 363 67 409 3.66e-32 125
Msa0300430 AT5G15900.2 26.934 349 217 11 47 363 86 428 4.97e-32 125
Msa0300430 AT2G37720.1 30.939 362 183 14 47 363 143 482 5.01e-32 125
Msa0300430 AT5G20680.6 28.226 372 220 14 23 363 102 457 2.15e-31 124
Msa0300430 AT3G28150.1 30.966 352 199 16 46 363 69 410 3.10e-31 122
Msa0300430 AT3G02440.2 26.513 347 212 12 47 359 135 472 4.95e-31 123
Msa0300430 AT3G02440.1 26.513 347 212 12 47 359 127 464 5.19e-31 123
Msa0300430 AT5G20680.2 28.226 372 220 14 23 363 178 533 5.27e-31 123
Msa0300430 AT5G20680.4 29.023 348 208 13 47 363 212 551 6.62e-31 123
Msa0300430 AT5G20680.1 29.023 348 208 13 47 363 212 551 6.62e-31 123
Msa0300430 AT5G20680.3 29.023 348 208 13 47 363 212 551 6.62e-31 123
Msa0300430 AT5G20680.5 29.023 348 208 13 47 363 212 551 6.62e-31 123
Msa0300430 AT4G11090.1 25.679 405 243 15 8 365 35 428 8.34e-29 116
Msa0300430 AT4G01080.1 27.901 362 214 12 33 359 77 426 2.82e-28 115
Msa0300430 AT4G23790.1 25.275 364 217 13 46 365 78 430 5.56e-23 99.8
Msa0300430 AT5G64470.4 26.378 254 166 8 47 282 55 305 5.25e-21 92.8
Msa0300430 AT5G64470.1 26.378 254 166 8 47 282 55 305 7.35e-21 92.4

Find 86 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCATGCAGCTCTCTT+TGG 0.210145 2_3:-55884127 Msa0300430:CDS
TCTATTCCGCACACCATATT+TGG 0.219542 2_3:-55885237 Msa0300430:CDS
TATCTCCACAATAACATTTC+AGG 0.240854 2_3:-55887583 Msa0300430:intron
AGGATCGAAACCCAAGAAAA+TGG 0.260094 2_3:-55888298 Msa0300430:exon
TTGTAATTGGATAATAAAAT+TGG 0.289706 2_3:-55883997 Msa0300430:three_prime_UTR
AGAGAAACACAACCATTCTT+TGG 0.302957 2_3:-55884352 Msa0300430:CDS
CGGTCAAGGTCTACCAAATA+TGG 0.307611 2_3:+55885224 None:intergenic
GTTTGACAACTTGGGCTAGA+TGG 0.309964 2_3:-55884922 Msa0300430:CDS
TAGCATGTATGATTCATTCT+TGG 0.316438 2_3:-55887644 Msa0300430:CDS
TGTAGTCATTGGTGTCTTCC+AGG 0.323483 2_3:-55884172 Msa0300430:CDS
CAAGCCATTGGTGTTCCTGC+TGG 0.351195 2_3:+55884319 None:intergenic
AGAAGAACATTCCAAGTATC+AGG 0.357411 2_3:+55884145 None:intergenic
TCTACAAAGGTTTGACAACT+TGG 0.371927 2_3:-55884931 Msa0300430:CDS
TTCCAGGACTTCCTGATACT+TGG 0.372897 2_3:-55884156 Msa0300430:CDS
CTTTGGTTGAAGTAGTGAAT+TGG 0.375458 2_3:-55884110 Msa0300430:exon
CAATTCAATTGTCAAAAGTA+TGG 0.391925 2_3:-55888060 Msa0300430:CDS
TATTTCTGATACTGAGTATC+AGG 0.397938 2_3:+55888033 None:intergenic
ACCTTGACCGTGAGAACATT+GGG 0.399023 2_3:-55885211 Msa0300430:CDS
GTGTGCGGAATAGAAATAAC+TGG 0.399396 2_3:+55885246 None:intergenic
AGCATGTATGATTCATTCTT+GGG 0.407416 2_3:-55887643 Msa0300430:CDS
CTCATTACTACTACTGGAAA+TGG 0.409028 2_3:+55888182 None:intergenic
ATCCTCTTTGTTGAAGGAAA+AGG 0.418304 2_3:+55888316 None:intergenic
AAGAAGACCTTGGTTTGAGC+TGG 0.426020 2_3:+55884881 None:intergenic
GTAACTGGTTTCGTGGCAAA+TGG 0.428187 2_3:-55888140 Msa0300430:CDS
GTTTCGATCCTCTTTGTTGA+AGG 0.444404 2_3:+55888310 None:intergenic
CTCAGTATCAGAAATATAGA+TGG 0.444563 2_3:-55888026 Msa0300430:CDS
TGCCAACAGATTGTAGTCAT+TGG 0.444942 2_3:-55884183 Msa0300430:CDS
TTCCTATGGTAGAAAACAAT+GGG 0.449400 2_3:+55884048 None:intergenic
ACCATAGGAATTATTTAACT+TGG 0.452262 2_3:-55884035 Msa0300430:three_prime_UTR
AACTCGCTGGAAGATGTAAC+TGG 0.464742 2_3:-55888155 Msa0300430:CDS
AGCAGGAACACCAATGGCTT+GGG 0.468530 2_3:-55884317 Msa0300430:CDS
TACATGCTAGTGAATTGAAC+TGG 0.471439 2_3:+55887658 None:intergenic
TTCACTATTACCCAAGCCAT+TGG 0.475251 2_3:+55884307 None:intergenic
TTTGACAACTTGGGCTAGAT+GGG 0.479154 2_3:-55884921 Msa0300430:CDS
ATAACACTACTATACCCTTC+TGG 0.481855 2_3:+55884205 None:intergenic
CATTGGGCGTGTTCTAAAGT+TGG 0.484902 2_3:-55885195 Msa0300430:CDS
ATTGAATTGTGGATCTATGA+AGG 0.486450 2_3:+55888074 None:intergenic
ATATGTTTCTTAATTAGTCC+AGG 0.487004 2_3:-55884075 Msa0300430:three_prime_UTR
TTCCAAGTATCAGGAAGTCC+TGG 0.489986 2_3:+55884154 None:intergenic
GGATCGAAACCCAAGAAAAT+GGG 0.490190 2_3:-55888297 Msa0300430:exon
GCCAAGTTAAATAATTCCTA+TGG 0.499275 2_3:+55884034 None:intergenic
GGTAGTTGTTGCTGTTGTGT+TGG 0.501527 2_3:+55888203 None:intergenic
AAGCCATTGGTGTTCCTGCT+GGG 0.502968 2_3:+55884320 None:intergenic
CAGCAGGAACACCAATGGCT+TGG 0.504711 2_3:-55884318 Msa0300430:CDS
CGGTTGTGCATTTCCAGTGT+GGG 0.509875 2_3:+55885103 None:intergenic
ATGGAGAGGAATGGATGTAT+TGG 0.512382 2_3:-55885150 Msa0300430:CDS
CTTTGTAGAACGCAATGAAA+CGG 0.518428 2_3:+55884945 None:intergenic
TAACTGGTTTCGTGGCAAAT+GGG 0.526407 2_3:-55888139 Msa0300430:CDS
CGTTTCATTGCGTTCTACAA+AGG 0.529142 2_3:-55884944 Msa0300430:CDS
GATAGCACTTTGCTTTGAGA+AGG 0.530854 2_3:+55887602 None:intergenic
CTACAAAGGTTTGACAACTT+GGG 0.543154 2_3:-55884930 Msa0300430:CDS
TGGCATTGGTGGACCCACAC+TGG 0.546946 2_3:-55885116 Msa0300430:CDS
GACCTTGACCGTGAGAACAT+TGG 0.550954 2_3:-55885212 Msa0300430:CDS
TCTATGAAGGGACAAGAAGA+AGG 0.551169 2_3:+55888087 None:intergenic
ATTCCTATGGTAGAAAACAA+TGG 0.552378 2_3:+55884047 None:intergenic
GGAAGATGTAACTGGTTTCG+TGG 0.558355 2_3:-55888147 Msa0300430:CDS
GAAAAGATGCACATCCAGAA+GGG 0.559145 2_3:-55884219 Msa0300430:CDS
TTTGGTTTGAAGTACCCAGC+AGG 0.566621 2_3:-55884334 Msa0300430:CDS
GGATCATAGAGAGGATACGA+AGG 0.570131 2_3:+55888108 None:intergenic
GGGTACTTCAAACCAAAGAA+TGG 0.571214 2_3:+55884340 None:intergenic
TGAAGTAGTGAATTGGAAAG+TGG 0.573720 2_3:-55884103 Msa0300430:three_prime_UTR
CTTTCACTTGTTCTATACCA+AGG 0.575010 2_3:-55887999 Msa0300430:intron
ACTAACCTGAAATGTTATTG+TGG 0.576103 2_3:+55887578 None:intergenic
CAATAAAGAGTGGTAATGCA+TGG 0.581612 2_3:-55885169 Msa0300430:CDS
ACGGTTGTGCATTTCCAGTG+TGG 0.583332 2_3:+55885102 None:intergenic
AGAAAAGATGCACATCCAGA+AGG 0.583703 2_3:-55884220 Msa0300430:CDS
TGGTAATGCATGGAGAGGAA+TGG 0.587257 2_3:-55885159 Msa0300430:CDS
CACCAATGACTACAATCTGT+TGG 0.588126 2_3:+55884181 None:intergenic
GCCCAATGTTCTCACGGTCA+AGG 0.590015 2_3:+55885210 None:intergenic
AAGAGTGGTAATGCATGGAG+AGG 0.592479 2_3:-55885164 Msa0300430:CDS
CAGATGGGATTATATTCAAG+AGG 0.594517 2_3:-55884993 Msa0300430:CDS
ACAACTTACTCGTAATGCAC+AGG 0.597709 2_3:+55884845 None:intergenic
AGTAATGAGAGAAAACTCGC+TGG 0.602900 2_3:-55888168 Msa0300430:CDS
TTGAATTGTGGATCTATGAA+GGG 0.607685 2_3:+55888075 None:intergenic
TGTAAATCCAGCTCAAACCA+AGG 0.609530 2_3:-55884888 Msa0300430:CDS
CTTGGTATAGAACAAGTGAA+AGG 0.623660 2_3:+55888000 None:intergenic
GAACACGCCCAATGTTCTCA+CGG 0.633134 2_3:+55885204 None:intergenic
TTATATTCAAGAGGGTGGCA+AGG 0.635985 2_3:-55884984 Msa0300430:CDS
TGGGATTATATTCAAGAGGG+TGG 0.638991 2_3:-55884989 Msa0300430:CDS
CAAGAAGAAGGATCATAGAG+AGG 0.640153 2_3:+55888099 None:intergenic
GTACCCAGCAGGAACACCAA+TGG 0.661011 2_3:-55884323 Msa0300430:CDS
AGATGGGATTATATTCAAGA+GGG 0.662305 2_3:-55884992 Msa0300430:CDS
GGTCTACCAAATATGGTGTG+CGG 0.672109 2_3:+55885231 None:intergenic
GATCATAGAGAGGATACGAA+GGG 0.672935 2_3:+55888109 None:intergenic
GTCACATCTAGAAAATACAC+TGG 0.675733 2_3:+55884259 None:intergenic
AAGTTGGACTCAATAAAGAG+TGG 0.679146 2_3:-55885179 Msa0300430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAATACATTTATTG+GGG - chr2_3:55885212-55885231 Msa0300430:CDS 10.0%
!! ACTATATATTTATTCATTAT+AGG - chr2_3:55886367-55886386 Msa0300430:intron 10.0%
!!! TTATTATTTGAATTATTTTC+AGG - chr2_3:55886973-55886992 Msa0300430:intron 10.0%
!! TTTATCAACTATATTTATAA+TGG - chr2_3:55887818-55887837 Msa0300430:intron 10.0%
!!! TGTAAATTTTCATATTATTT+TGG - chr2_3:55888301-55888320 Msa0300430:exon 10.0%
!!! TTTGATACTTTTGAATTTAA+TGG - chr2_3:55884736-55884755 Msa0300430:intron 15.0%
!!! ATTTTTATTATTTTCCATGT+TGG - chr2_3:55884955-55884974 Msa0300430:CDS 15.0%
!! TTAAAAAATACATTTATTGG+GGG - chr2_3:55885213-55885232 Msa0300430:CDS 15.0%
!!! TTCAATACAAATTTCATTTT+TGG + chr2_3:55885619-55885638 None:intergenic 15.0%
!! TTCTAATTAATAAGAATGTT+TGG + chr2_3:55885688-55885707 None:intergenic 15.0%
!! GTAAATAAATTATATGTTAG+TGG - chr2_3:55885740-55885759 Msa0300430:intron 15.0%
!! AGAATAATACAATATTAGTA+TGG - chr2_3:55885766-55885785 Msa0300430:intron 15.0%
!!! GATCATGAATATAATTTTAT+TGG + chr2_3:55885948-55885967 None:intergenic 15.0%
!! ACAAAAAATAAAATTTGAAG+TGG - chr2_3:55886306-55886325 Msa0300430:intron 15.0%
!!! CAAAAAATAAAATTTGAAGT+GGG - chr2_3:55886307-55886326 Msa0300430:intron 15.0%
!! AATATAAATTACTAGAAGAA+AGG + chr2_3:55886645-55886664 None:intergenic 15.0%
!! ATGTACAATTATTATATGTA+AGG - chr2_3:55886799-55886818 Msa0300430:intron 15.0%
!!! AACTTTTATAAATCATTTGA+CGG + chr2_3:55886852-55886871 None:intergenic 15.0%
!!! AATGTTTTTTTACAGAATTA+CGG - chr2_3:55887478-55887497 Msa0300430:intron 15.0%
!!! TTTTGAGTTATTATTGTAAT+TGG - chr2_3:55888242-55888261 Msa0300430:CDS 15.0%
!! TTGTAATTGGATAATAAAAT+TGG - chr2_3:55888255-55888274 Msa0300430:CDS 15.0%
!! TTAGAAAATGAAAATGTGTT+TGG - chr2_3:55884485-55884504 Msa0300430:intron 20.0%
!!! AATGTGTTTGGTATTTTTTT+AGG - chr2_3:55884497-55884516 Msa0300430:intron 20.0%
!!! AAATTATGTTGGTTATGTTT+TGG - chr2_3:55884764-55884783 Msa0300430:intron 20.0%
!! TTTGAAGAAAAACAAAACAT+GGG + chr2_3:55884880-55884899 None:intergenic 20.0%
!! ATTTGAAGAAAAACAAAACA+TGG + chr2_3:55884881-55884900 None:intergenic 20.0%
!! TTATGAAAAAACTATTACCA+TGG + chr2_3:55885109-55885128 None:intergenic 20.0%
!!! TTTTTTCATAAAAAATGCCA+TGG - chr2_3:55885118-55885137 Msa0300430:CDS 20.0%
!! ATTACTATCTATTATTACCA+TGG + chr2_3:55885138-55885157 None:intergenic 20.0%
!! TAAAAAATACATTTATTGGG+GGG - chr2_3:55885214-55885233 Msa0300430:CDS 20.0%
!! TAAAAAAAGATACAAACTAG+TGG - chr2_3:55885789-55885808 Msa0300430:intron 20.0%
!! TCCTAAAGTTTCTATATAAA+GGG + chr2_3:55885990-55886009 None:intergenic 20.0%
!! TTCCTAAAGTTTCTATATAA+AGG + chr2_3:55885991-55886010 None:intergenic 20.0%
!!! ATTAGCAATAATTAGTGTTT+TGG - chr2_3:55886022-55886041 Msa0300430:intron 20.0%
!! TGATCATTACAGTTTAAAAA+GGG + chr2_3:55886142-55886161 None:intergenic 20.0%
!! TTGATCATTACAGTTTAAAA+AGG + chr2_3:55886143-55886162 None:intergenic 20.0%
!! GCTATTCACATTAAAAAAAT+AGG - chr2_3:55886252-55886271 Msa0300430:intron 20.0%
!! GTACTACAATTTAATTCATA+TGG + chr2_3:55886333-55886352 None:intergenic 20.0%
!! TTCTAGTAATTTATATTCCA+TGG - chr2_3:55886648-55886667 Msa0300430:intron 20.0%
!!! TTGAATTATTTTCAGGATTA+TGG - chr2_3:55886980-55886999 Msa0300430:intron 20.0%
!! CATAATCAATTCTGTTATTA+AGG - chr2_3:55887197-55887216 Msa0300430:intron 20.0%
!!! TTTTAAATTTCAGTAGAATC+AGG - chr2_3:55887514-55887533 Msa0300430:intron 20.0%
!! TTTAAATTTCAGTAGAATCA+GGG - chr2_3:55887515-55887534 Msa0300430:intron 20.0%
!! AAAGAAATCATTAGAATGTT+TGG - chr2_3:55887603-55887622 Msa0300430:CDS 20.0%
!!! TCTTAAATTTTACAAATTCG+TGG + chr2_3:55887664-55887683 None:intergenic 20.0%
!! ATAAAACTTAGTCTAGTAAT+TGG + chr2_3:55887803-55887822 None:intergenic 20.0%
!! TTATAATGGTGTATGATATT+TGG - chr2_3:55887832-55887851 Msa0300430:intron 20.0%
!! TGTATGATATTTGGTAAATT+AGG - chr2_3:55887841-55887860 Msa0300430:intron 20.0%
!! GTATGATATTTGGTAAATTA+GGG - chr2_3:55887842-55887861 Msa0300430:intron 20.0%
!! TATGATATTTGGTAAATTAG+GGG - chr2_3:55887843-55887862 Msa0300430:intron 20.0%
!! TAAATTCAAGAGCTTTTGTT+TGG + chr2_3:55884026-55884045 None:intergenic 25.0%
!! TACTTTTGACAATTGAATTG+TGG + chr2_3:55884192-55884211 None:intergenic 25.0%
! CAATTCAATTGTCAAAAGTA+TGG - chr2_3:55884192-55884211 Msa0300430:CDS 25.0%
! TAAGTAGCTAGTATAATGTT+TGG + chr2_3:55884409-55884428 None:intergenic 25.0%
!!! TTTTTTTAGGTTCAATGCAT+TGG - chr2_3:55884510-55884529 Msa0300430:intron 25.0%
! GGAAAAAAGATTATGTTTGT+TGG - chr2_3:55884553-55884572 Msa0300430:intron 25.0%
!! TAATGGTAGTGAAATTATGT+TGG - chr2_3:55884753-55884772 Msa0300430:intron 25.0%
! ACTCAATAAAGTTTCCAATT+AGG + chr2_3:55884841-55884860 None:intergenic 25.0%
!! TTATTCTTTAAAAATGTCCC+CGG + chr2_3:55885044-55885063 None:intergenic 25.0%
! TAATAAATGTGAATCTTCCA+TGG - chr2_3:55885061-55885080 Msa0300430:intron 25.0%
! GTAAATGATAGTAATAACCA+TGG + chr2_3:55885081-55885100 None:intergenic 25.0%
!! AACATATTTTCCTCTTACAA+AGG - chr2_3:55885172-55885191 Msa0300430:CDS 25.0%
!! GTTTTTAAATCCTTTGTAAG+AGG + chr2_3:55885185-55885204 None:intergenic 25.0%
!!! GTTTTTTTTTGTTGTGAAAC+CGG + chr2_3:55885875-55885894 None:intergenic 25.0%
!!! AGAAAAAGGCACTATATATT+AGG + chr2_3:55885905-55885924 None:intergenic 25.0%
! AGTTTCTATATAAAGGGAAA+AGG + chr2_3:55885984-55886003 None:intergenic 25.0%
! TCCCTTTATATAGAAACTTT+AGG - chr2_3:55885986-55886005 Msa0300430:intron 25.0%
! TTACTACTAATGATGATTGT+TGG + chr2_3:55886068-55886087 None:intergenic 25.0%
! GATCATTACAGTTTAAAAAG+GGG + chr2_3:55886141-55886160 None:intergenic 25.0%
! TTGATTGATGCTTATATCAA+GGG + chr2_3:55886232-55886251 None:intergenic 25.0%
!! TTTTTGTTCTATTGAGAACA+AGG + chr2_3:55886293-55886312 None:intergenic 25.0%
!!! TTTGAAGGGATTATCTTTTT+TGG + chr2_3:55886489-55886508 None:intergenic 25.0%
! AAAAGATAATCCCTTCAAAA+TGG - chr2_3:55886490-55886509 Msa0300430:intron 25.0%
!!! ACAAAAGTGTCACAAAATAT+TGG - chr2_3:55886589-55886608 Msa0300430:intron 25.0%
!!! CAAAAGTGTCACAAAATATT+GGG - chr2_3:55886590-55886609 Msa0300430:intron 25.0%
!! TTCATTTTCATTGAAACTAG+AGG - chr2_3:55886676-55886695 Msa0300430:intron 25.0%
! AACAGAATTGATTATGATCA+TGG + chr2_3:55887193-55887212 None:intergenic 25.0%
! AATCAATTCTGTTATTAAGG+AGG - chr2_3:55887200-55887219 Msa0300430:intron 25.0%
!! TAAATTTTACAAATTCGTGG+TGG + chr2_3:55887661-55887680 None:intergenic 25.0%
!! TTAGTGAATGTTTTGTACTA+TGG + chr2_3:55887707-55887726 None:intergenic 25.0%
! ATGATATTTGGTAAATTAGG+GGG - chr2_3:55887844-55887863 Msa0300430:intron 25.0%
! ATATGTTTCTTAATTAGTCC+AGG - chr2_3:55888177-55888196 Msa0300430:CDS 25.0%
! ACCATAGGAATTATTTAACT+TGG - chr2_3:55888217-55888236 Msa0300430:CDS 25.0%
! AACAGAAAACCCATTTTCTT+GGG + chr2_3:55883967-55883986 None:intergenic 30.0%
! TAACAGAAAACCCATTTTCT+TGG + chr2_3:55883968-55883987 None:intergenic 30.0%
AGAAGAAGTAAAAACAGAGT+CGG + chr2_3:55883991-55884010 None:intergenic 30.0%
! TTTTCTCTCATTACTACTAC+TGG + chr2_3:55884079-55884098 None:intergenic 30.0%
TTGAATTGTGGATCTATGAA+GGG + chr2_3:55884180-55884199 None:intergenic 30.0%
ATTGAATTGTGGATCTATGA+AGG + chr2_3:55884181-55884200 None:intergenic 30.0%
! TATTTCTGATACTGAGTATC+AGG + chr2_3:55884222-55884241 None:intergenic 30.0%
CTCAGTATCAGAAATATAGA+TGG - chr2_3:55884226-55884245 Msa0300430:CDS 30.0%
AACAGAAGCTATGATAGAAA+TGG + chr2_3:55884294-55884313 None:intergenic 30.0%
TGTTAGATTTAGTGTAGGTT+TGG - chr2_3:55884310-55884329 Msa0300430:CDS 30.0%
! ACTTTGAGTCACTTTAATTC+TGG + chr2_3:55884352-55884371 None:intergenic 30.0%
GAATTAAAGTGACTCAAAGT+AGG - chr2_3:55884352-55884371 Msa0300430:CDS 30.0%
GAGTAAATCTATCAGAATCA+CGG + chr2_3:55884381-55884400 None:intergenic 30.0%
!! TGGATTTTCTAGCAAAGTAT+AGG - chr2_3:55884530-55884549 Msa0300430:intron 30.0%
!! GGATTTTCTAGCAAAGTATA+GGG - chr2_3:55884531-55884550 Msa0300430:intron 30.0%
!! GATTTTCTAGCAAAGTATAG+GGG - chr2_3:55884532-55884551 Msa0300430:intron 30.0%
TAGCATGTATGATTCATTCT+TGG - chr2_3:55884608-55884627 Msa0300430:intron 30.0%
AGCATGTATGATTCATTCTT+GGG - chr2_3:55884609-55884628 Msa0300430:intron 30.0%
TATCTCCACAATAACATTTC+AGG - chr2_3:55884669-55884688 Msa0300430:intron 30.0%
ACTAACCTGAAATGTTATTG+TGG + chr2_3:55884677-55884696 None:intergenic 30.0%
! ATCCATTTTGTAGTTACTAG+CGG - chr2_3:55884906-55884925 Msa0300430:CDS 30.0%
GTGAGCAATAAAGTATGAAA+CGG - chr2_3:55884994-55885013 Msa0300430:intron 30.0%
TGAGCAATAAAGTATGAAAC+GGG - chr2_3:55884995-55885014 Msa0300430:intron 30.0%
! AATAAAGTATGAAACGGGTT+TGG - chr2_3:55885000-55885019 Msa0300430:intron 30.0%
AAAAACTATTACCATGGCAA+TGG + chr2_3:55885103-55885122 None:intergenic 30.0%
! TTTCTTTTCCTGATCAAAAC+TGG - chr2_3:55885302-55885321 Msa0300430:intron 30.0%
!! TAAATATGCCAGTTTTGATC+AGG + chr2_3:55885313-55885332 None:intergenic 30.0%
! GAAACACGTGTTTTCTTTTT+CGG + chr2_3:55885520-55885539 None:intergenic 30.0%
AGAGAACACCAAATATAAGA+CGG + chr2_3:55885574-55885593 None:intergenic 30.0%
TCCTATGCAAAGAAAGAAAA+AGG + chr2_3:55885919-55885938 None:intergenic 30.0%
CTTGATTGATGCTTATATCA+AGG + chr2_3:55886233-55886252 None:intergenic 30.0%
!! GTAGTTTACTGACTTTATGT+AGG + chr2_3:55886571-55886590 None:intergenic 30.0%
!! AATGAAAATGAAAAGTGCCA+TGG + chr2_3:55886668-55886687 None:intergenic 30.0%
AGAAAATAGACATCACTGAA+AGG - chr2_3:55886700-55886719 Msa0300430:intron 30.0%
!!! ATGTATTGGTTTTCAACACA+TGG - chr2_3:55887116-55887135 Msa0300430:intron 30.0%
GGTGTTAAATATAGATCCTA+CGG + chr2_3:55887172-55887191 None:intergenic 30.0%
! TTTTGACATTTGAATGCAGA+TGG - chr2_3:55887243-55887262 Msa0300430:intron 30.0%
TTTGACATTTGAATGCAGAT+GGG - chr2_3:55887244-55887263 Msa0300430:intron 30.0%
AGATGGGATTATATTCAAGA+GGG - chr2_3:55887260-55887279 Msa0300430:intron 30.0%
AATTCCTAAAAAGAAGACCT+TGG + chr2_3:55887384-55887403 None:intergenic 30.0%
GCACACAATTTAGTAACAAA+AGG + chr2_3:55887781-55887800 None:intergenic 30.0%
TTCCTATGGTAGAAAACAAT+GGG + chr2_3:55888207-55888226 None:intergenic 30.0%
ATTCCTATGGTAGAAAACAA+TGG + chr2_3:55888208-55888227 None:intergenic 30.0%
GCCAAGTTAAATAATTCCTA+TGG + chr2_3:55888221-55888240 None:intergenic 30.0%
!!! CATATTATTTTGGCACTCTT+TGG - chr2_3:55888311-55888330 Msa0300430:five_prime_UTR 30.0%
ATCCTCTTTGTTGAAGGAAA+AGG + chr2_3:55883939-55883958 None:intergenic 35.0%
CTCATTACTACTACTGGAAA+TGG + chr2_3:55884073-55884092 None:intergenic 35.0%
CTTGGTATAGAACAAGTGAA+AGG + chr2_3:55884255-55884274 None:intergenic 35.0%
CTTTCACTTGTTCTATACCA+AGG - chr2_3:55884253-55884272 Msa0300430:CDS 35.0%
TATGATAGAAATGGAGAAGG+AGG + chr2_3:55884285-55884304 None:intergenic 35.0%
AGCTATGATAGAAATGGAGA+AGG + chr2_3:55884288-55884307 None:intergenic 35.0%
GCTTCTGTTAGATTTAGTGT+AGG - chr2_3:55884305-55884324 Msa0300430:CDS 35.0%
TACATGCTAGTGAATTGAAC+TGG + chr2_3:55884597-55884616 None:intergenic 35.0%
!!! GAGAAGGAATACCTTGTTTT+TGG + chr2_3:55884637-55884656 None:intergenic 35.0%
CAATTAGGTGAAAGACAGAA+AGG + chr2_3:55884826-55884845 None:intergenic 35.0%
CTTTCTGTCTTTCACCTAAT+TGG - chr2_3:55884824-55884843 Msa0300430:intron 35.0%
ACTATCATTTACCATTGCCA+TGG - chr2_3:55885089-55885108 Msa0300430:intron 35.0%
ATTGTACTTTCCCTCTTCTT+TGG - chr2_3:55885266-55885285 Msa0300430:intron 35.0%
AACACCAAATATAAGACGGA+TGG + chr2_3:55885570-55885589 None:intergenic 35.0%
GAATAGAGCTTAATCGCTTA+AGG + chr2_3:55885853-55885872 None:intergenic 35.0%
TAAGCGATTAAGCTCTATTC+CGG - chr2_3:55885853-55885872 Msa0300430:intron 35.0%
! GCCTTTTTCTTTCTTTGCAT+AGG - chr2_3:55885915-55885934 Msa0300430:intron 35.0%
!! GGGAAAAGGTATTGACAATT+TGG + chr2_3:55885970-55885989 None:intergenic 35.0%
! CCTTCTTTTATCACACAATG+TGG + chr2_3:55886616-55886635 None:intergenic 35.0%
CCACATTGTGTGATAAAAGA+AGG - chr2_3:55886613-55886632 Msa0300430:intron 35.0%
TCTCAAGTAGTGTAGTACTT+TGG - chr2_3:55886740-55886759 Msa0300430:intron 35.0%
CAAATCACAATCAATCGTGT+TGG + chr2_3:55886905-55886924 None:intergenic 35.0%
ACACGATTGATTGTGATTTG+TGG - chr2_3:55886905-55886924 Msa0300430:intron 35.0%
ATACACTACATTGTTGACAC+TGG + chr2_3:55886935-55886954 None:intergenic 35.0%
AAGTTGGACTCAATAAAGAG+TGG - chr2_3:55887073-55887092 Msa0300430:intron 35.0%
! CAATAAAGAGTGGTAATGCA+TGG - chr2_3:55887083-55887102 Msa0300430:intron 35.0%
CAGATGGGATTATATTCAAG+AGG - chr2_3:55887259-55887278 Msa0300430:intron 35.0%
CTTTGTAGAACGCAATGAAA+CGG + chr2_3:55887310-55887329 None:intergenic 35.0%
TCTACAAAGGTTTGACAACT+TGG - chr2_3:55887321-55887340 Msa0300430:intron 35.0%
CTACAAAGGTTTGACAACTT+GGG - chr2_3:55887322-55887341 Msa0300430:intron 35.0%
! CAAACCAAGGTCTTCTTTTT+AGG - chr2_3:55887377-55887396 Msa0300430:intron 35.0%
!! ACACATAGATTTTGGCATAC+TGG + chr2_3:55887637-55887656 None:intergenic 35.0%
! GTGAATGTTTTGTACTATGG+TGG + chr2_3:55887704-55887723 None:intergenic 35.0%
AGAGAAACACAACCATTCTT+TGG - chr2_3:55887900-55887919 Msa0300430:intron 35.0%
GTCACATCTAGAAAATACAC+TGG + chr2_3:55887996-55888015 None:intergenic 35.0%
ATAACACTACTATACCCTTC+TGG + chr2_3:55888050-55888069 None:intergenic 35.0%
AGAAGAACATTCCAAGTATC+AGG + chr2_3:55888110-55888129 None:intergenic 35.0%
CTTTGGTTGAAGTAGTGAAT+TGG - chr2_3:55888142-55888161 Msa0300430:CDS 35.0%
TGAAGTAGTGAATTGGAAAG+TGG - chr2_3:55888149-55888168 Msa0300430:CDS 35.0%
!! TAGAAAACAATGGGTTTTCC+TGG + chr2_3:55888198-55888217 None:intergenic 35.0%
! AACCCATTGTTTTCTACCAT+AGG - chr2_3:55888202-55888221 Msa0300430:CDS 35.0%
! GTCCTTTTCCTTCAACAAAG+AGG - chr2_3:55883934-55883953 Msa0300430:three_prime_UTR 40.0%
GTTTCGATCCTCTTTGTTGA+AGG + chr2_3:55883945-55883964 None:intergenic 40.0%
AGGATCGAAACCCAAGAAAA+TGG - chr2_3:55883954-55883973 Msa0300430:three_prime_UTR 40.0%
GGATCGAAACCCAAGAAAAT+GGG - chr2_3:55883955-55883974 Msa0300430:three_prime_UTR 40.0%
AGTAATGAGAGAAAACTCGC+TGG - chr2_3:55884084-55884103 Msa0300430:three_prime_UTR 40.0%
! TAACTGGTTTCGTGGCAAAT+GGG - chr2_3:55884113-55884132 Msa0300430:exon 40.0%
GATCATAGAGAGGATACGAA+GGG + chr2_3:55884146-55884165 None:intergenic 40.0%
CAAGAAGAAGGATCATAGAG+AGG + chr2_3:55884156-55884175 None:intergenic 40.0%
TCTATGAAGGGACAAGAAGA+AGG + chr2_3:55884168-55884187 None:intergenic 40.0%
ATTCTTGGGTGCCAAAAACA+AGG - chr2_3:55884623-55884642 Msa0300430:intron 40.0%
!! GATAGCACTTTGCTTTGAGA+AGG + chr2_3:55884653-55884672 None:intergenic 40.0%
CAAAGAACACATCACTTGCA+TGG + chr2_3:55884803-55884822 None:intergenic 40.0%
ACAAAACATGGGTTCACACA+AGG + chr2_3:55884869-55884888 None:intergenic 40.0%
TCCATGTTGGTGTGAAACAA+TGG - chr2_3:55884968-55884987 Msa0300430:CDS 40.0%
TCCATTGTTTCACACCAACA+TGG + chr2_3:55884972-55884991 None:intergenic 40.0%
! AAAGTATGAAACGGGTTTGG+TGG - chr2_3:55885003-55885022 Msa0300430:intron 40.0%
TTAAAAATGTCCCCGGCAAA+AGG + chr2_3:55885037-55885056 None:intergenic 40.0%
TGTCTACGTTCCAAAGAAGA+GGG + chr2_3:55885279-55885298 None:intergenic 40.0%
ATGTCTACGTTCCAAAGAAG+AGG + chr2_3:55885280-55885299 None:intergenic 40.0%
!!! GTTTTCTTTTTCGGTCTAGC+TGG + chr2_3:55885511-55885530 None:intergenic 40.0%
AACACGTGTTTCTCAGACTA+TGG - chr2_3:55885528-55885547 Msa0300430:intron 40.0%
ACGTGCAAAGAAGAAAAGGT+TGG + chr2_3:55886118-55886137 None:intergenic 40.0%
! GTCATGTGGTCCATTTTGAA+GGG + chr2_3:55886503-55886522 None:intergenic 40.0%
! TGTCATGTGGTCCATTTTGA+AGG + chr2_3:55886504-55886523 None:intergenic 40.0%
GTGTGCGGAATAGAAATAAC+TGG + chr2_3:55887009-55887028 None:intergenic 40.0%
TCTATTCCGCACACCATATT+TGG - chr2_3:55887015-55887034 Msa0300430:intron 40.0%
ATGGAGAGGAATGGATGTAT+TGG - chr2_3:55887102-55887121 Msa0300430:intron 40.0%
! TGGTTTTCAACACATGGCAT+TGG - chr2_3:55887122-55887141 Msa0300430:intron 40.0%
!! TTTTCAACACATGGCATTGG+TGG - chr2_3:55887125-55887144 Msa0300430:intron 40.0%
TGGGATTATATTCAAGAGGG+TGG - chr2_3:55887263-55887282 Msa0300430:intron 40.0%
TTATATTCAAGAGGGTGGCA+AGG - chr2_3:55887268-55887287 Msa0300430:intron 40.0%
CGTTTCATTGCGTTCTACAA+AGG - chr2_3:55887308-55887327 Msa0300430:intron 40.0%
! TTTGACAACTTGGGCTAGAT+GGG - chr2_3:55887331-55887350 Msa0300430:intron 40.0%
TGTAAATCCAGCTCAAACCA+AGG - chr2_3:55887364-55887383 Msa0300430:intron 40.0%
ACAACTTACTCGTAATGCAC+AGG + chr2_3:55887410-55887429 None:intergenic 40.0%
! TCTCTCATGCATGATTTTGC+TGG + chr2_3:55887885-55887904 None:intergenic 40.0%
GGGTACTTCAAACCAAAGAA+TGG + chr2_3:55887915-55887934 None:intergenic 40.0%
TTCACTATTACCCAAGCCAT+TGG + chr2_3:55887948-55887967 None:intergenic 40.0%
AGAAAAGATGCACATCCAGA+AGG - chr2_3:55888032-55888051 Msa0300430:CDS 40.0%
GAAAAGATGCACATCCAGAA+GGG - chr2_3:55888033-55888052 Msa0300430:CDS 40.0%
TGCCAACAGATTGTAGTCAT+TGG - chr2_3:55888069-55888088 Msa0300430:CDS 40.0%
CACCAATGACTACAATCTGT+TGG + chr2_3:55888074-55888093 None:intergenic 40.0%
! GGTAGTTGTTGCTGTTGTGT+TGG + chr2_3:55884052-55884071 None:intergenic 45.0%
AACTCGCTGGAAGATGTAAC+TGG - chr2_3:55884097-55884116 Msa0300430:three_prime_UTR 45.0%
! GGAAGATGTAACTGGTTTCG+TGG - chr2_3:55884105-55884124 Msa0300430:exon 45.0%
! GTAACTGGTTTCGTGGCAAA+TGG - chr2_3:55884112-55884131 Msa0300430:exon 45.0%
GGATCATAGAGAGGATACGA+AGG + chr2_3:55884147-55884166 None:intergenic 45.0%
! GGAGAAGGAGGTATATACCT+TGG + chr2_3:55884273-55884292 None:intergenic 45.0%
CGCCGCTAGTAACTACAAAA+TGG + chr2_3:55884911-55884930 None:intergenic 45.0%
! GTTACTAGCGGCGAATTTTG+TGG - chr2_3:55884918-55884937 Msa0300430:CDS 45.0%
CGCTCCATCCGTCTTATATT+TGG - chr2_3:55885563-55885582 Msa0300430:intron 45.0%
CAAAATGGACCACATGACAC+TGG - chr2_3:55886505-55886524 Msa0300430:intron 45.0%
CAGACGAGTGCATCTGAATT+AGG + chr2_3:55886534-55886553 None:intergenic 45.0%
TCACTGAAAGGAGTTGAGTG+AGG - chr2_3:55886712-55886731 Msa0300430:intron 45.0%
GGTCTACCAAATATGGTGTG+CGG + chr2_3:55887024-55887043 None:intergenic 45.0%
CGGTCAAGGTCTACCAAATA+TGG + chr2_3:55887031-55887050 None:intergenic 45.0%
ACCTTGACCGTGAGAACATT+GGG - chr2_3:55887041-55887060 Msa0300430:intron 45.0%
!! CATTGGGCGTGTTCTAAAGT+TGG - chr2_3:55887057-55887076 Msa0300430:intron 45.0%
! AAGAGTGGTAATGCATGGAG+AGG - chr2_3:55887088-55887107 Msa0300430:intron 45.0%
! TGGTAATGCATGGAGAGGAA+TGG - chr2_3:55887093-55887112 Msa0300430:intron 45.0%
! GTTTGACAACTTGGGCTAGA+TGG - chr2_3:55887330-55887349 Msa0300430:intron 45.0%
! AAGAAGACCTTGGTTTGAGC+TGG + chr2_3:55887374-55887393 None:intergenic 45.0%
ACTTGCGCAAAGTATGTGTG+AGG - chr2_3:55887573-55887592 Msa0300430:intron 45.0%
! GTGGTGGCACACATAGATTT+TGG + chr2_3:55887645-55887664 None:intergenic 45.0%
GGTAAATTAGGGGGAGAGAT+TGG - chr2_3:55887853-55887872 Msa0300430:intron 45.0%
!! TTTGGTTTGAAGTACCCAGC+AGG - chr2_3:55887918-55887937 Msa0300430:intron 45.0%
! TGTAGTCATTGGTGTCTTCC+AGG - chr2_3:55888080-55888099 Msa0300430:CDS 45.0%
TTCCAGGACTTCCTGATACT+TGG - chr2_3:55888096-55888115 Msa0300430:CDS 45.0%
TTCCAAGTATCAGGAAGTCC+TGG + chr2_3:55888101-55888120 None:intergenic 45.0%
CTTCTTCATGCAGCTCTCTT+TGG - chr2_3:55888125-55888144 Msa0300430:CDS 45.0%
!! TATTTAAAAAATACATTTAT+TGG - chr2_3:55885210-55885229 Msa0300430:CDS 5.0%
!! ATTTAAAAAATACATTTATT+GGG - chr2_3:55885211-55885230 Msa0300430:CDS 5.0%
!!! ATATTTAATTTATCTTTTTT+TGG - chr2_3:55885326-55885345 Msa0300430:intron 5.0%
!!! TATTAATATTATTTTCAAAA+AGG + chr2_3:55886405-55886424 None:intergenic 5.0%
!! GTATGAAACGGGTTTGGTGG+AGG - chr2_3:55885006-55885025 Msa0300430:intron 50.0%
! GTGGAGGCTTTTCCTTTTGC+CGG - chr2_3:55885022-55885041 Msa0300430:intron 50.0%
! TGGAGGCTTTTCCTTTTGCC+GGG - chr2_3:55885023-55885042 Msa0300430:intron 50.0%
GGGGACGTGCAAAGAAGAAA+AGG + chr2_3:55886122-55886141 None:intergenic 50.0%
AATGGACCACATGACACTGG+TGG - chr2_3:55886508-55886527 Msa0300430:intron 50.0%
ATTAGGCCACCAGTGTCATG+TGG + chr2_3:55886517-55886536 None:intergenic 50.0%
GACCTTGACCGTGAGAACAT+TGG - chr2_3:55887040-55887059 Msa0300430:intron 50.0%
GAACACGCCCAATGTTCTCA+CGG + chr2_3:55887051-55887070 None:intergenic 50.0%
CGGTTGTGCATTTCCAGTGT+GGG + chr2_3:55887152-55887171 None:intergenic 50.0%
ACGGTTGTGCATTTCCAGTG+TGG + chr2_3:55887153-55887172 None:intergenic 50.0%
CACTGGAAATGCACAACCGT+AGG - chr2_3:55887153-55887172 Msa0300430:intron 50.0%
! AAGCCATTGGTGTTCCTGCT+GGG + chr2_3:55887935-55887954 None:intergenic 50.0%
AGCAGGAACACCAATGGCTT+GGG - chr2_3:55887935-55887954 Msa0300430:intron 50.0%
! GGAGGCTTTTCCTTTTGCCG+GGG - chr2_3:55885024-55885043 Msa0300430:intron 55.0%
GCCCAATGTTCTCACGGTCA+AGG + chr2_3:55887045-55887064 None:intergenic 55.0%
GTACCCAGCAGGAACACCAA+TGG - chr2_3:55887929-55887948 Msa0300430:intron 55.0%
! CAAGCCATTGGTGTTCCTGC+TGG + chr2_3:55887936-55887955 None:intergenic 55.0%
CAGCAGGAACACCAATGGCT+TGG - chr2_3:55887934-55887953 Msa0300430:intron 55.0%
!! TGGCATTGGTGGACCCACAC+TGG - chr2_3:55887136-55887155 Msa0300430:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 55883925 55888349 55883925 ID=Msa0300430;Name=Msa0300430
chr2_3 mRNA 55883925 55888349 55883925 ID=Msa0300430-mRNA-1;Parent=Msa0300430;Name=Msa0300430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=48|1|1|1|1|1|5|198|365
chr2_3 exon 55883925 55884411 55883925 ID=Msa0300430-mRNA-1:exon:17853;Parent=Msa0300430-mRNA-1
chr2_3 exon 55884854 55885012 55884854 ID=Msa0300430-mRNA-1:exon:17852;Parent=Msa0300430-mRNA-1
chr2_3 exon 55885104 55885279 55885104 ID=Msa0300430-mRNA-1:exon:17851;Parent=Msa0300430-mRNA-1
chr2_3 exon 55887584 55887755 55887584 ID=Msa0300430-mRNA-1:exon:17850;Parent=Msa0300430-mRNA-1
chr2_3 exon 55888000 55888349 55888000 ID=Msa0300430-mRNA-1:exon:17849;Parent=Msa0300430-mRNA-1
chr2_3 five_prime_UTR 55888302 55888349 55888302 ID=Msa0300430-mRNA-1:five_prime_utr;Parent=Msa0300430-mRNA-1
chr2_3 CDS 55888000 55888301 55888000 ID=Msa0300430-mRNA-1:cds;Parent=Msa0300430-mRNA-1
chr2_3 CDS 55887584 55887755 55887584 ID=Msa0300430-mRNA-1:cds;Parent=Msa0300430-mRNA-1
chr2_3 CDS 55885104 55885279 55885104 ID=Msa0300430-mRNA-1:cds;Parent=Msa0300430-mRNA-1
chr2_3 CDS 55884854 55885012 55884854 ID=Msa0300430-mRNA-1:cds;Parent=Msa0300430-mRNA-1
chr2_3 CDS 55884123 55884411 55884123 ID=Msa0300430-mRNA-1:cds;Parent=Msa0300430-mRNA-1
chr2_3 three_prime_UTR 55883925 55884122 55883925 ID=Msa0300430-mRNA-1:three_prime_utr;Parent=Msa0300430-mRNA-1
Gene Sequence

>Msa0300430

ATGGGTTTTCTGTTACCGACTCTGTTTTTACTTCTTCTGTTTTCTTCACACCAAACAAAAGCTCTTGAATTTAACTCCAACACAACAGCAACAACTACCATTTCCAGTAGTAGTAATGAGAGAAAACTCGCTGGAAGATGTAACTGGTTTCGTGGCAAATGGGTCTATGACCCTTCGTATCCTCTCTATGATCCTTCTTCTTGTCCCTTCATAGATCCACAATTCAATTGTCAAAAGTATGGCAGACCTGATACTCAGTATCAGAAATATAGATGGCAACCTTTCACTTGTTCTATACCAAGGTTCAATGCATTGGATTTTCTAGCAAAGTATAGGGGAAAAAAGATTATGTTTGTTGGTGATTCTTTGAGCTTAAACCAGTTCAATTCACTAGCATGTATGATTCATTCTTGGGTGCCAAAAACAAGGTATTCCTTCTCAAAGCAAAGTGCTATCTCCACAATAACATTTCAGGATTATGGTCTCCAGTTATTTCTATTCCGCACACCATATTTGGTAGACCTTGACCGTGAGAACATTGGGCGTGTTCTAAAGTTGGACTCAATAAAGAGTGGTAATGCATGGAGAGGAATGGATGTATTGGTTTTCAACACATGGCATTGGTGGACCCACACTGGAAATGCACAACCATGGGATTATATTCAAGAGGGTGGCAAGGTGTACAAAGACATGAACCGTTTCATTGCGTTCTACAAAGGTTTGACAACTTGGGCTAGATGGGTTAACATCAATGTAAATCCAGCTCAAACCAAGGTCTTCTTTTTAGGAATTTCTCCTGTGCATTACGAGGGGAGAGATTGGAATCAACCAGCAAAATCATGCATGAGAGAAACACAACCATTCTTTGGTTTGAAGTACCCAGCAGGAACACCAATGGCTTGGGTAATAGTGAATAAAGTATTGAGCAGATTAAAGAAGCCAGTGTATTTTCTAGATGTGACAACATTGTCACAGTACAGAAAAGATGCACATCCAGAAGGGTATAGTAGTGTTATGCCAACAGATTGTAGTCATTGGTGTCTTCCAGGACTTCCTGATACTTGGAATGTTCTTCTTCATGCAGCTCTCTTTGGTTGA
Protein sequence

>Msa0300430

MGFLLPTLFLLLLFSSHQTKALEFNSNTTATTTISSSSNERKLAGRCNWFRGKWVYDPSYPLYDPSSCPFIDPQFNCQKYGRPDTQYQKYRWQPFTCSIPRFNALDFLAKYRGKKIMFVGDSLSLNQFNSLACMIHSWVPKTRYSFSKQSAISTITFQDYGLQLFLFRTPYLVDLDRENIGRVLKLDSIKSGNAWRGMDVLVFNTWHWWTHTGNAQPWDYIQEGGKVYKDMNRFIAFYKGLTTWARWVNINVNPAQTKVFFLGISPVHYEGRDWNQPAKSCMRETQPFFGLKYPAGTPMAWVIVNKVLSRLKKPVYFLDVTTLSQYRKDAHPEGYSSVMPTDCSHWCLPGLPDTWNVLLHAALFG*