AlfalfaGEDB | Msa0301950

M. sativa cultivar zhongmu-4 / Msa0301950

KEGG: K13435
GO: GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0140096 GO:1901564 GO:1901700
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301950	XP_003597308.1	96.340	847	25	2	1	841	1	847	0.0	1682

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301950	sp\|Q9LX66\|HERK_ARATH	64.855	828	267	10	22	841	19	830	0.0	1067

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301950	G7IUA3	96.340	847	25	2	1	841	1	847	0.0	1682

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0264080	Msa0301950	0.963113	1.089940e-121	-8.615850e-47
Msa0301950	Msa0893470	0.871843	5.018396e-67	-8.615850e-47
Msa0301950	Msa1218290	0.861533	9.598119e-64	-8.615850e-47
Msa0301950	Msa1218330	0.860617	1.822863e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0301950	MtrunA17_Chr2g0327671	96.340	847	25	2	1	841	1	847	1682
Msa0301950	MtrunA17_Chr4g0030441	73.325	836	213	8	10	841	11	840	1229
Msa0301950	MtrunA17_Chr2g0318301	53.144	843	367	15	14	841	14	843	833
Msa0301950	MtrunA17_Chr8g0352381	52.067	774	344	14	28	789	59	817	772
Msa0301950	MtrunA17_Chr1g0202711	48.368	827	381	14	27	841	40	832	747
Msa0301950	MtrunA17_Chr6g0468691	50.387	776	345	15	26	781	21	776	721
Msa0301950	MtrunA17_Chr4g0061081	44.964	834	408	15	30	827	34	852	670
Msa0301950	MtrunA17_Chr2g0292501	44.753	791	392	17	35	792	31	809	634
Msa0301950	MtrunA17_Chr7g0245131	42.762	898	438	26	11	841	5	893	629
Msa0301950	MtrunA17_Chr1g0190581	41.243	885	442	27	12	841	7	868	610

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0301950	AT3G46290.1	64.855	828	267	10	22	841	19	830	1067
Msa0301950	AT5G59700.1	63.561	848	275	13	6	841	4	829	1011
Msa0301950	AT5G54380.1	52.788	843	360	16	26	841	24	855	813
Msa0301950	AT4G39110.1	49.882	846	373	18	28	841	52	878	770
Msa0301950	AT5G61350.1	52.158	811	340	21	26	798	26	826	760
Msa0301950	AT2G21480.1	52.191	776	344	13	26	788	49	810	757
Msa0301950	AT2G39360.1	48.038	841	386	15	15	841	12	815	744
Msa0301950	AT5G24010.1	48.514	841	393	18	14	841	11	824	739
Msa0301950	AT1G30570.1	44.627	791	397	13	31	791	30	809	660
Msa0301950	AT3G51550.1	44.444	891	407	28	21	841	23	895	657

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Find 200 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTAGACACTGGATC+CGG	0.579889	2_3:-58471548	Msa0301950:CDS
AAATCAAACCAGATTCTCTT+AGG	0.360801	2_3:-58469646	Msa0301950:CDS
AAATCAGACGTATATTCCTT+TGG	0.372137	2_3:-58469812	Msa0301950:CDS
AAATCCAAGTTCTATAAAGA+GGG	0.575320	2_3:+58471175	None:intergenic
AAATGGTGAACTTAGCAGAA+TGG	0.531613	2_3:-58469730	Msa0301950:CDS
AAATTCAGCAATCCCTTGCT+GGG	0.517967	2_3:+58470252	None:intergenic
AACAAGATTTGAAACATCGG+TGG	0.671950	2_3:+58471119	None:intergenic
AACACCAGATAGATCATCGA+CGG	0.641139	2_3:+58469403	None:intergenic
AACCAATCAAGGACACCAAA+TGG	0.499714	2_3:+58470191	None:intergenic
AACTATCTGAACTGAAATTA+CGG	0.387208	2_3:+58471715	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGCACAAAAACATAAAGA+GGG	+	chr2_3:58469415-58469434	None:intergenic	30.0%
AGTTGCACAAAAACATAAAG+AGG	+	chr2_3:58469416-58469435	None:intergenic	30.0%
GATAATTACCTTATAGACTG+TGG	-	chr2_3:58469448-58469467	Msa0301950:CDS	30.0%
GAGTTGAAAGTAACTTCTTA+TGG	+	chr2_3:58469525-58469544	None:intergenic	30.0%
ATTCTTGCAGTTTGATAAAG+AGG	+	chr2_3:58469607-58469626	None:intergenic	30.0%
ATAGAATACTCCTTCATAAC+AGG	+	chr2_3:58469799-58469818	None:intergenic	30.0%
GAAATCCAAGTTCTATAAAG+AGG	+	chr2_3:58470042-58470061	None:intergenic	30.0%
AGAATCCTGATAATATGGAA+CGG	+	chr2_3:58470400-58470419	None:intergenic	30.0%
ATGGGAAGTAAATATTCCAA+TGG	-	chr2_3:58470762-58470781	Msa0301950:CDS	30.0%
TTCATCACAATAACCAATCA+AGG	+	chr2_3:58471036-58471055	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	58469355	58471880	58469355	ID=Msa0301950;Name=Msa0301950
chr2_3	mRNA	58469355	58471880	58469355	ID=Msa0301950-mRNA-1;Parent=Msa0301950;Name=Msa0301950-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|841
chr2_3	exon	58469355	58471880	58469355	ID=Msa0301950-mRNA-1:exon:18875;Parent=Msa0301950-mRNA-1
chr2_3	CDS	58469355	58471880	58469355	ID=Msa0301950-mRNA-1:cds;Parent=Msa0301950-mRNA-1

Gene Sequence

>Msa0301950

ATGATGTTGGATTGGAAAAAACATGGTTTGTTTGTCTGTGTTTTGTATATGTTGTTACCCTCTTTATGTTTTTGTGCAACTTTTGTTCCATCAGATAATTACCTTATAGACTGTGGATCAACTACAAGTACTTCAGTTGGTAACCGTAATTTCAGTTCAGATAGTTTCCATAAGAAGTTACTTTCAACTCAGCAAGAGATTCTTGCTAGTACTAGCTCAAAATCTGTTTCTGATGCTGGTGATGAATCACCTCTTTATCAAACTGCAAGAATCTTTACTGGATCTTCAAAGTACACTTTTCCAATTAACCAAAAGGGTAGACACTGGATCCGGTTTTATTTCTTTCCTTTTATTTATGATAGATACAATTTGAATGCTGCAAAATTCTCTGTTGCAACACAGACTTTTGTTCTTCTTAGTGGATTTACTGCTCCCAAGAGTCCTGTTATGAAGGAGTATTCTATCAATGTTAACACAGATACTCTTGAGATTACTTTTAAACCTTCTGATGATTCTGTTGCATTTGTGAATGCAATTGAAGTTGTTTCTGTTCCGGATGAACTCATTGCTGACGAGGCTCCTACATTGAGTCCGGTATCAACGTTTTCTGGATTGGGGTTTCAGGCTTTGGAGACGGTTTGGAGGGTTAACATGGGTGGTCCAGTTGTTACCTCTGGACAGGACCCTCTTTATAGAACTTGGATTTCGGATCAAAAGTATCTTCTGCAATCGAGCCTTGCCACCGATGTTTCAAATCTTGTTGGTGTTGATTTTGAGGATGGAGGGCCAACAGAGAACATTGCCCCGCGTAGTGTTTACGGTACTGCCGCAGAGATGAACACGAACCAGAGCGGTGATGCTAATCTTAATTTCAATGTGACATGGCAGTTTGACACGGAGCCAGGATTTCAATACCTTGTTCGAACTCACTTTTGTGATATAGTCAGTAAAGGTCTCAATCAACTTTATTTCAATGTTTACATTGACTCGTTGACGGCTGCTAAGGATCTTGATCTTGCTTCTAAAAGTAGTAATGTTTTGTCCGTTCCATATTATCAGGATTCTATTACGCCTTTAGCTGACGGCAATAAACTTCGTGTAAGTATTGGCCCTTCCACTTTGAATAAGGACAACCCTAATGCTATTTTGAATGGGCTGGAGATCTTGAAAATGAACAATTCTATAGGCAGTCTAAGTGCAGATGCAGCATCTGGTGCTGGGGGTGCTACTTCTGGTTCGAGTTCTAGCAAGGTTGGTGTGATAACTGGTGTGAGTGTTGGGGTAGTGAGTGCATTGGTCTTGGCCGGAGTTTTTTGTGTACTGTGCAGGAAAAAGAAGAGGTTGGCAAGACAAAGGCAGTCGAAGACATGGATTCCTTTATCCGTGAATGATGCAACATCCCATACAATGGGAAGTAAATATTCCAATGGCACAACAATAAGTGCTGCTTCGAACTTCGAGTACCGCGTCCCTTTTGCGGAAGTTCAGGAGGGTACAAATAATTTTGATGAGAGTTGGGTTATTGGGGTTGGTGGTTTTGGGAAAGTATACAAGGGAGAGTTAAGGGATGGTAGAAAAGTGGCGGTGAAGAGGGGGAATCCGCGGTCCCAGCAAGGGATTGCTGAATTTAGAACTGAAATTGAAATGTTGTCTCAGTTCCGTCATCGCCATTTGGTGTCCTTGATTGGTTATTGTGATGAAAATAATGAAATGATCCTGATATATGAATACATGGAGAAGGGAACACTCAAGGGTCATCTGTATGGTTTGGGACTCCCGAGCTTAAGTTGGAAGGAGAGACTTGATATATGCATTGGATCTGCCAGAGGACTTCATTACCTTCACACTGGCTATGCTAAAGCGGTTATTCATCGTGACGTGAAGTCTGCAAATATCTTACTTGATGAGAACCTAATGGCTAAAGTTGCTGATTTTGGATTGTCAAAAACCGGTCCCGAGCTCGATCAAACGCACGTGAGCACAGCTGTCAAGGGGAGTTTTGGGTACCTTGATCCAGAGTATTTCAGGAGGCAACAACTGACAGAAAAATCAGACGTATATTCCTTTGGGGTAGTTCTGTTTGAAGTTCTTTGTGCAAGGCCAGTTATAGATCCATCTCTTCCTAGGGAAATGGTGAACTTAGCAGAATGGGCAATGAAATATCAGAAAAAAGGACAGCTGGAGCAAATCATCGATACATCTCTTCAAGGGAAAATCAAACCAGATTCTCTTAGGAAGTTCGCTGAAACTGCTGAGAAATGTTTGGCTGATTATGGTGTTGACAGGCCTTCAATGGGAGATGTCTTGTGGAATTTGGAATATGCGCTTCAACTTCAAGAGGCCGTGGTTCAAGGTGATCCTGAAGAAAACAGTACAAATATGATCGGTGAACTATCTCCACAAGTCAACAATTTCAACCATTCTTCTGCCTCTGCCGTGCCATTCGAAGCTTCAACCGTCGATGATCTATCTGGTGTTTCTATGAGTAGGGTATTCTCACAGTTGGTGAAGTCTGAGGGTAGATGA

Protein sequence

>Msa0301950

MMLDWKKHGLFVCVLYMLLPSLCFCATFVPSDNYLIDCGSTTSTSVGNRNFSSDSFHKKLLSTQQEILASTSSKSVSDAGDESPLYQTARIFTGSSKYTFPINQKGRHWIRFYFFPFIYDRYNLNAAKFSVATQTFVLLSGFTAPKSPVMKEYSINVNTDTLEITFKPSDDSVAFVNAIEVVSVPDELIADEAPTLSPVSTFSGLGFQALETVWRVNMGGPVVTSGQDPLYRTWISDQKYLLQSSLATDVSNLVGVDFEDGGPTENIAPRSVYGTAAEMNTNQSGDANLNFNVTWQFDTEPGFQYLVRTHFCDIVSKGLNQLYFNVYIDSLTAAKDLDLASKSSNVLSVPYYQDSITPLADGNKLRVSIGPSTLNKDNPNAILNGLEILKMNNSIGSLSADAASGAGGATSGSSSSKVGVITGVSVGVVSALVLAGVFCVLCRKKKRLARQRQSKTWIPLSVNDATSHTMGSKYSNGTTISAASNFEYRVPFAEVQEGTNNFDESWVIGVGGFGKVYKGELRDGRKVAVKRGNPRSQQGIAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMEKGTLKGHLYGLGLPSLSWKERLDICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLPREMVNLAEWAMKYQKKGQLEQIIDTSLQGKIKPDSLRKFAETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFNHSSASAVPFEASTVDDLSGVSMSRVFSQLVKSEGR*